Citrus Sinensis ID: 014696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLCKPGFHCTRISPLDLLSVA
Secondary Structure (PSIPRED)
ccHHHHHccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHccccccccHHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHccccccccccccccEEHEcccccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHcccccHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccHHHcccccccEEEcccccEEEEEEEEcccccccccccccccccccHEccccccccccccccccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MKFLSIVgnsfgcsasgERLVSAARDGDLQEAKALLeynprlvrystfgvrnsplhysaaqGHHEIVSLLIESgvdinlrnyrGQTALMQACQHGHWEVVLTLILYKANIhradylnggTALHLAALNGHSRCIRLLLAdyipsvpnaWNRLRkksnktgsilefdeRYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLsvsgagstslhyaacggnAQCCQILIAMGASltaenangwtpLMVARSWHRTgledilstqpegrlevlpspylalpLMSIVKIARecgwrnsdslstcpdpcvvclerkctvaakgcdhefcTQCALYLCstnsscvvakgpigsipcplcrhgivsfdklpgtrpikeitrtsslsltfctcsvdhqvqestslttglckpgfhctrispldllsva
Flexible Loop (DISEMBL)
MKFLSIVGnsfgcsasGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPsvpnawnrlrkksNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIlstqpegrlEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVsfdklpgtrpIKEITRTSSLSLTFCTCSVDHQVQESTslttglckpgfhctrispldllsva
Low Complexity Region (SEG)
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEItrtsslsltfctcsVDHQVQESTSLTTGLCKPGFHCTRISPLDLLSVA
Disordered region (IsUnstruct)
*****IVGNSFGC***************LQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLCKPGFHCTRISPLDL****
Disordered Region (DISOPRED)
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCS***************CKPGFHCTRISPLDLLSVA
Disordered Region (DISEMBL)
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLCKPGFHCTRISPLDLLSVA
Disordered Region (DISPRO)
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGT*************LT********************CKP*F*CTR**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLCKPGFHCTRISPLDLLSVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q6KAE5	496	Probable E3 ubiquitin-pro	yes	no	0.976	0.826	0.645	1e-158
Q6NLQ8	508	E3 ubiquitin-protein liga	yes	no	0.914	0.755	0.677	1e-150
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.909	0.771	0.617	1e-139
Q4FE45	513	E3 ubiquitin-protein liga	no	no	0.930	0.762	0.527	1e-110
Q337A0	520	Probable E3 ubiquitin-pro	no	no	0.892	0.721	0.538	1e-107
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.797	0.797	0.494	3e-80
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.795	0.732	0.296	7e-27
Q65XV2	450	E3 ubiquitin-protein liga	no	no	0.816	0.762	0.299	1e-25
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.802	0.755	0.297	6e-22
Q8N8A2	993	Serine/threonine-protein	yes	no	0.519	0.219	0.338	1e-20

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score =  558 bits (1438), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/431 (64%), Positives = 330/431 (76%), Gaps = 21/431 (4%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M FLS+VGNSFGCSASGERLVSAARDGDLQEA+ALLEYNPRL RYSTFG RNSPLHY+AA
Sbjct: 1   MGFLSLVGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ESGV+INLRNYRGQTALMQACQ+GHWEVV TL+L+ AN+HR DYLNGG+
Sbjct: 61  QGHHEIVSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGS 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV------ 174
           ALH AAL+GH+RC+RL+LADY+PS+PN WN ++   ++ G   + DE      V      
Sbjct: 121 ALHFAALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADG 180

Query: 175 ---LLHL-TLNGHVESVQLLLDLGASVSE-------YLSVSGAGSTSLHYAACGGNAQCC 223
               LH+  LNGHVE VQLLLDLGASV E        + + GAGST LHYAACGGNA CC
Sbjct: 181 GLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCC 240

Query: 224 QILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV 283
           Q+LIA GASL+A+NA+GWTPLMVARSWHR  LE+ILS +PE R+  +PSPYL LPLMSI+
Sbjct: 241 QLLIARGASLSAQNASGWTPLMVARSWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIM 300

Query: 284 KIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKG 343
            IARE GWR  +    C DPC VCLE  C+VAA+GC HEFCT+CALYLCST+ + V    
Sbjct: 301 SIAREFGWRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTSV---S 357

Query: 344 PIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLCK 403
           P G+IPCPLCRH I++F  LPGT PI+E+ R +SLSL+FCT         + S+ + L +
Sbjct: 358 PAGAIPCPLCRHPIIAFTALPGTSPIRELPR-NSLSLSFCTTCPAVNSDSTPSIASHLYR 416

Query: 404 PGFHCTRISPL 414
             F C R+ P+
Sbjct: 417 TEFQCARMPPM 427

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 279/412 (67%), Positives = 322/412 (78%), Gaps = 28/412 (6%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M+FLS+VGNSFGCSASGERLVSAARDGDLQEAKALL+YNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ESGVDINLRNYRGQTALMQACQHGHWEVVL LIL+ ANIHR+DYLNGGT
Sbjct: 61  QGHHEIVSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGH RCIR+LL++YIPSVPN W+ L+   NK  S+  FD    H EV+     
Sbjct: 121 ALHLAALNGHPRCIRILLSEYIPSVPNCWSLLK---NKKTSVAGFDSSVLH-EVINRAAD 176

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGH+E+VQLLLDLGASV++        + + GAGST+LHYA+CGGN QC
Sbjct: 177 GGITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQC 236

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL---STQPEGRLEVLPSPYLALPL 279
           CQ+LI+ GA L A N+NGWTP+MVARSWHR  LE+IL   + QP+  L  +PSP+L LPL
Sbjct: 237 CQLLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTEQPQLHLPNVPSPFLCLPL 296

Query: 280 MSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCV 339
           MSIV IA+ECGWR +D L+ C DPC VCLERKCTVAA GC HEFCT CALYL +T+ +  
Sbjct: 297 MSIVNIAQECGWRENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITSS 356

Query: 340 VAKGPI-GSIPCPLCRHGIVSFDKLP--GTRPIKEITRTSSLSLTFCTCSVD 388
                  GS+PCPLCR+GIVSF KLP          +  +S+SL+FCTCS D
Sbjct: 357 KTSNVTPGSVPCPLCRNGIVSFTKLPHTTATTRTSTSSRTSISLSFCTCSSD 408

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/400 (61%), Positives = 299/400 (74%), Gaps = 18/400 (4%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M  L +VG+SFGCSA+GERLVSAARDGD+QEA ALLE NPRL RYSTFG+RNSPLHYSAA
Sbjct: 1   MGLLGMVGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           +GHHEIVSLLIESGVDINLRN RGQTALMQAC +GHW+VV  L+L+KANIH+ D  +G T
Sbjct: 61  KGHHEIVSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQILVLFKANIHKKDCFSGAT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV------ 174
           A+H AAL GH+RC+RLL+ADY+PS+P  W+ +  K     +   FD       +      
Sbjct: 121 AIHFAALKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDETNKEAFDAVALRRLINNKSDG 180

Query: 175 ---LLHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQCC 223
               LHL  L+GH E VQLLLDLGASVSE        + + G+GST LHYAACGG+A CC
Sbjct: 181 GVTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCC 240

Query: 224 QILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV 283
           Q+L+A GA++ A+N NG TPLMVARSWH++ +E IL+ + E  + +LPS YL+LPLMSIV
Sbjct: 241 QLLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSEVPVRILPSSYLSLPLMSIV 300

Query: 284 KIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKG 343
           KIARECGWR +   S C DPC +CL+ +CTV+A+GC HEFCT+CALYLC+T SS    +G
Sbjct: 301 KIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIRG 360

Query: 344 PIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFC 383
             GSIPCPLCRH IVSF +L  T PIKE+  T+  SL  C
Sbjct: 361 VPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNK-SLALC 399

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/415 (52%), Positives = 282/415 (67%), Gaps = 24/415 (5%)

Query: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
           +GNSFGCSASGERLVSAARDGD  EAK LL+ NP L +YSTFG  NSPLH++AA+GH+EI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V LL+E+G D+N RNY GQTALMQAC++GHWEVV TL+L++ N+ RADYL G TALH AA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAA 120

Query: 127 LNGHSRCIRLLLADYIP-----SVPNAWNRLRKKSNKTGSILEFDERYFHLEVL-LHL-T 179
           +NGH+RCIRL+LAD++P     S+P       K  ++  ++ +F  +     +  LH+  
Sbjct: 121 VNGHARCIRLVLADFLPSDKLNSLPETGVVTAKNKSEQSALSKFVNKAADGGITALHMAA 180

Query: 180 LNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
           LNG  + VQLLLDL A+VS         + + GAGST LHYAACGGN +CCQIL+A GA 
Sbjct: 181 LNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQILLARGAR 240

Query: 233 LTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLP-SPYLALPLMSIVKIARECGW 291
               N NGW P+ +AR W R  LE +LS   +  +   P S YL+LPL+SI+ IARE G 
Sbjct: 241 KMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNIAREFGL 300

Query: 292 RNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCP 351
           + S ++    D C VCLER CTVAA+GC+H+ C +CALYLCS+++   V  GP GSIPCP
Sbjct: 301 Q-SATIGDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPPGSIPCP 359

Query: 352 LCRHGIVSFDKLPGTRPIKEITRTSSL--SLTFCTCSVDHQVQESTSLTTGLCKP 404
           LCRHGI +F +LP +     +TR   L  SL FC   + H   ++T  ++  C P
Sbjct: 360 LCRHGITAFKRLPSS-----LTREMKLPMSLGFCAPCMLH-TGDTTDQSSPTCPP 408

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/407 (53%), Positives = 276/407 (67%), Gaps = 32/407 (7%)

Query: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
           +GNS GCSASGERLVSAARDGD  EA+ LLE +P L RYSTFG  NSPLH++AA+GH +I
Sbjct: 1   MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V+LL+E G D+N+RNY GQTALM AC+HGHWEVV  L+L++ N+ RADYL+G TALH AA
Sbjct: 61  VTLLLEKGADVNVRNYCGQTALMHACRHGHWEVVQMLLLFRCNVTRADYLSGRTALHFAA 120

Query: 127 LNGHSRCIRLLLADYIPSVP---NAWNRLRKKSNKTGS--------ILEFDE----RYFH 171
            +G  RC+RLLLAD++PS P    A + +     +T S         L+F+E    RY +
Sbjct: 121 HDGLVRCVRLLLADFVPSAPLEDGASSTVDGGECQTNSGSSPCSSLGLKFNESARLRYIN 180

Query: 172 LE-----VLLHL-TLNGHVESVQLLLDLGASVSEYL-------SVSGAGSTSLHYAACGG 218
                    LH+  LNGH + +QLL+DLGA+VS          ++ GAGST LHYAA GG
Sbjct: 181 KPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYAAGGG 240

Query: 219 NAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVL-PSPYLAL 277
           NA+CCQ+L++ GAS    N NGW P+ VAR + R  LE +LS      +    PS YLAL
Sbjct: 241 NAECCQLLLSKGASKLTLNCNGWLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSNYLAL 300

Query: 278 PLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSS 337
           P MSI+ IARE G  ++ +     D C VCLER C+VAA+GC HEFC +CALYLCST+++
Sbjct: 301 PFMSILNIAREFGLLHTVASVDDSDLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSNT 360

Query: 338 CVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCT 384
            V   GP GSIPCPLCR+GI+SF KLP T P + +   SS +LTFC 
Sbjct: 361 RVEFTGPPGSIPCPLCRNGIMSFTKLPST-PTEGL--KSSSALTFCN 404

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score =  299 bits (765), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 183/370 (49%), Positives = 231/370 (62%), Gaps = 35/370 (9%)

Query: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
           +GNS GC   GERL +AA+DGD  EA+ LL  NP L R +TFG  NSPLH +AA+GHHEI
Sbjct: 1   MGNSLGCVGLGERLAAAAKDGDAAEAQRLLAANPGLARCTTFGNLNSPLHVAAAKGHHEI 60

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
            +LL+E+G D+N RN  GQT LMQAC+ GHWEVV TL++++ N+ R + L+G TALH+AA
Sbjct: 61  AALLLENGADVNARNIYGQTPLMQACRFGHWEVVQTLLVFRCNVWRVENLSGRTALHMAA 120

Query: 127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVE 185
             GH +C+RLL+AD   +  +    + K +N  G +             LHL  L+GHVE
Sbjct: 121 AGGHVKCVRLLVAD---AAGDRDGYVNKAAN--GGV-----------TALHLAALHGHVE 164

Query: 186 SVQLLLDLGASVSEY--------LSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
            V LL+D  AS++          ++  GAGST LHYAACGG  +CCQIL++ GA  TA N
Sbjct: 165 CVHLLIDERASLAAQTLPCAAPPMASIGAGSTPLHYAACGGEVKCCQILVSRGADRTAIN 224

Query: 238 ANGWTPLMVARSWHRTGLEDILSTQPEGRLEV---LPSPYLALPLMSIVKIARECGW--- 291
            NGW P+  AR W    LE +LS  P+  L +    PS YL+ PL S++ IARE G    
Sbjct: 225 CNGWLPIDAARIWGCNWLEHVLS--PKSHLPIPKFPPSGYLSQPLPSLIAIAREQGLNLS 282

Query: 292 -RNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPC 350
              SD      D C VCLER CTVAA+GCDHE C +CA+ LCS   S   + G  G IPC
Sbjct: 283 SEVSDGFDEGADACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKS-YDSAGIAGEIPC 341

Query: 351 PLCRHGIVSF 360
           PLCR GI SF
Sbjct: 342 PLCRTGIASF 351

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 165/388 (42%), Gaps = 54/388 (13%)

Query: 7   VGNSFGCSASGER-LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHE 65
           +G S  C +  E  + ++ + GD+   + ++   P L+  +T   R+S LH +AA G  E
Sbjct: 1   MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query: 66  IVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
           I+SLL+E   + +L N   QT LM A  +G    V  L    ANI   D +N  T LH A
Sbjct: 61  ILSLLLERFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYA 120

Query: 126 ALNGHSRCIRLLLADYIPS-VPNAWNRLR---KKSNKTGSILEFDERYFHLEVLLHLTLN 181
           A  GH+ C++ +L+    S V   W   R    + +K  + L    R             
Sbjct: 121 AYYGHANCVQAILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAAR------------Q 168

Query: 182 GHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
              E V +LLD G+ V    SV G+ GST LH AA  G+  C + L+A GA     +A+G
Sbjct: 169 RRPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAARSGSIDCVRKLLAWGADRLQRDASG 228

Query: 241 WTPLMVARSWHRTGLEDILSTQPEGRLEVLPSP-------------YLALPLMSIVKIAR 287
             P +VA   H+ G    L         V PSP              L   LM   +   
Sbjct: 229 RIPYVVAMK-HKHGACGALLNPSSAEPLVWPSPLKFISELNDEAKLLLEQALMEANRERE 287

Query: 288 ECGWRNS-------------DSLSTCPDP--CVVCLERKCTVAAKGCDHEFCTQCALYLC 332
           +   + +             D++S   D   C +C E+ CT+  K C H+ C QC L LC
Sbjct: 288 KTILKGTAYSLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQCTLALC 347

Query: 333 ---STNSSCVVAKGPIGSIPCPLCRHGI 357
                N +      P+    CP CR  I
Sbjct: 348 CHNKPNPTTSTVTPPV----CPFCRSTI 371

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 164/394 (41%), Gaps = 51/394 (12%)

Query: 44  RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTL 103
           R +T   R S LH +AA G  E++S+ ++ G   +  N   QT LM A  HG  + VL L
Sbjct: 40  RRATLYDRLSVLHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKL 99

Query: 104 ILYKANIHRADYLNGGTALHLAALNGHSRCIR-LLLADYIPSVPNAWNRLRKKSNKTGSI 162
           +   ANI   D ++  T LH AA  GH  C++ +L A     V ++W   R         
Sbjct: 100 LQADANILMFDSVHARTCLHHAAYYGHVDCLQAILAAAQTTPVADSWGFARF-------- 151

Query: 163 LEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNA 220
              + R  H    LHL    G    VQ+LL+ GA VS      G  GSTSLH AA  GN 
Sbjct: 152 --VNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSGNL 209

Query: 221 QCCQILIAMGASLTAENANGWTPLMVARSWHR---------TGLEDILSTQPEGRLEVLP 271
            C + L+A GA     ++ G  P  VA   +          T  E ++   P   +  L 
Sbjct: 210 DCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISELE 269

Query: 272 SPYLALPLMSIVKIARECGWRNSDSLS----TCPDP--------------------CVVC 307
               AL   ++++  RE   R    L+    + P P                    C +C
Sbjct: 270 PEAKALLEAALMEANRE---REKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCIC 326

Query: 308 LERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTR 367
            ++ CT+  + C H+ C  C L LC  N        P  S  CP CR G +S   +  TR
Sbjct: 327 FDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTTLTP-PSPACPFCR-GSISRLVVAQTR 384

Query: 368 PIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGL 401
              +  + SSL LT       H + E +S   GL
Sbjct: 385 SACDPDKPSSLQLTRKRSRRSHNLSEGSSSFKGL 418

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score =  105 bits (262), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 167/383 (43%), Gaps = 46/383 (12%)

Query: 7   VGNSFGCSASGER--LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH 64
           +G+   CS   +   L  AA+ GD+    ALL  +P L R +T   R + LH +AA G  
Sbjct: 1   MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60

Query: 65  EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL 124
           +++S+L++   D+++ + + QT LM A   G+ E V+ L+   AN+   D     T LH 
Sbjct: 61  QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120

Query: 125 AALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL- 180
           AA  GH+ C++ +L   A     V  +W   R  + +       DER       LHL   
Sbjct: 121 AAYYGHAECLQAILGAAAQAQGPVAASWGFARFVNVR-------DERG---ATPLHLAAR 170

Query: 181 NGHVESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNAQCCQILIAMGASLTAENAN 239
           +     V+LLLD GA VS   +V G  GST+LH AA  G+ +C + L+A GA     ++ 
Sbjct: 171 HARASCVRLLLDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSA 230

Query: 240 GWTPLMVA-RSWHR--------TGLEDILSTQPE---GRLEVLPSPYLALPLMSIVKIAR 287
           G     VA R  HR           E I+   P    G LE      L   LM   +   
Sbjct: 231 GRIAYAVAMRRGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALLEAALMEANRERE 290

Query: 288 ECGWRNSD----------SLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLC---ST 334
           +     SD                + C +C E+ C++  K C H+ C  C L +C     
Sbjct: 291 KRILHGSDINIKGGDEEEESEDEEEACNICFEQACSMEVKECGHQMCAACTLAICCHSKP 350

Query: 335 NSSCVVAKGPIGSIPCPLCRHGI 357
           N   ++   P     CP CR  I
Sbjct: 351 NPKTLLLHPP----ACPFCRTTI 369

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AA  G  Q  + LLE        S  G   SPLH +A  GHH+ + +L++S VD+++R+ 
Sbjct: 539 AAAYGHRQCLELLLERTNSGFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDE 598

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
           +G+TAL  A   GH E V  LI   A+I   D +   T LH + +NGH+ C+RLLL   I
Sbjct: 599 KGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLE--I 656

Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
              P A   +  K  K  + L     Y            GH+++V LLL+  A+V    +
Sbjct: 657 ADNPEA---VDVKDAKGQTPLMLAVAY------------GHIDAVSLLLEKEANVD---T 698

Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS-WHRTGLEDILS 260
           V   G T+LH     G+ +C Q+L+    S+  +++ G TPL  A +  H T L ++L 
Sbjct: 699 VDILGCTALHRGIMTGHEECVQMLLEQEVSILCKDSRGRTPLHYAAARGHATWLSELLQ 757

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
225445704	509	PREDICTED: probable E3 ubiquitin-protein	0.978	0.807	0.766	0.0
255585015	511	ankyrin repeat-containing protein, putat	0.978	0.804	0.743	1e-179
253971055	513	ankyrin repeat-rich protein [Nicotiana b	0.976	0.799	0.748	1e-179
224143838	465	receptor-like kinase binding protein [Po	0.976	0.881	0.743	1e-179
147776684	511	hypothetical protein VITISV_014614 [Viti	0.978	0.804	0.746	1e-178
154268056	514	ankyrin repeat-rich protein [Solanum tub	0.976	0.797	0.746	1e-177
224088380	507	predicted protein [Populus trichocarpa]	0.976	0.808	0.726	1e-174
449462695	510	PREDICTED: probable E3 ubiquitin-protein	0.978	0.805	0.732	1e-173
357479903	538	Ankyrin repeat-rich protein [Medicago tr	0.954	0.745	0.685	1e-171
356547802	508	PREDICTED: probable E3 ubiquitin-protein	0.95	0.785	0.739	1e-167

>gi|225445704|ref|XP_002269428.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS32 [Vitis vinifera] gi|297743747|emb|CBI36630.3| unnamed protein product [Vitis vinifera]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/432 (76%), Positives = 362/432 (83%), Gaps = 21/432 (4%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M+FLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MRFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ SGVDINLRNYRGQTALMQACQHGHWEVV TL+L++ANIHRADYLNGGT
Sbjct: 61  QGHHEIVSLLLVSGVDINLRNYRGQTALMQACQHGHWEVVQTLVLFRANIHRADYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF---------- 170
           ALHLAALNGHSRCIRLLLADYIPS+P+ WN LRK+SN+  SI EFDE             
Sbjct: 121 ALHLAALNGHSRCIRLLLADYIPSIPDLWNILRKRSNREESISEFDEGALCQVINRPADG 180

Query: 171 HLEVLLHLTLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQCC 223
            +  L    LNGHVE++QLLLDLGAS+SE        + + GAGST LHYAACGGNAQCC
Sbjct: 181 GITALHMAALNGHVETLQLLLDLGASLSEVTVEDGTTIDLIGAGSTPLHYAACGGNAQCC 240

Query: 224 QILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV 283
           QILIA GA L AENANGWTPLMVARSWHR  LE+ILSTQPE +   + S YL+LPLMSIV
Sbjct: 241 QILIARGAYLAAENANGWTPLMVARSWHRGWLEEILSTQPEVQSRTISSSYLSLPLMSIV 300

Query: 284 KIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKG 343
           KIARECGWRN+DSL TC DPCVVCLERKCTVAA+GCDHEFCT+CALYLCS NSS  V++ 
Sbjct: 301 KIARECGWRNNDSLPTCQDPCVVCLERKCTVAAQGCDHEFCTKCALYLCSMNSSSTVSQC 360

Query: 344 PIGSIPCPLCRHGIVSFDKLPGTRP-IKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLC 402
           P+GSI CPLCR+GIVSF KLPGT+P +KEI RT SLSL+FCTCS   +  E TSLTT  C
Sbjct: 361 PLGSIACPLCRNGIVSFVKLPGTKPLVKEIART-SLSLSFCTCS--GEGPEPTSLTTPFC 417

Query: 403 KPGFHCTRISPL 414
           KP FHC+RISPL
Sbjct: 418 KPDFHCSRISPL 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585015|ref|XP_002533218.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526975|gb|EEF29171.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/432 (74%), Positives = 356/432 (82%), Gaps = 21/432 (4%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKFLSI+GNSFGCSASGERLVSAARDGDLQEAKALLE NPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFLSIMGNSFGCSASGERLVSAARDGDLQEAKALLECNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVL L+LYKANIHR+DYLNGGT
Sbjct: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLILLLYKANIHRSDYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGH+RC+RLLLADYIPS+ + WN L K+SN + SI EFDE   H EV+     
Sbjct: 121 ALHLAALNGHTRCVRLLLADYIPSISDCWNILAKRSNNSESISEFDESALH-EVINRPAD 179

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGH+E+VQLLLDLGASVSE        + + GAGST+LHYAACGGN QC
Sbjct: 180 GGITALHMAALNGHLETVQLLLDLGASVSEVTVEDGTTIDLIGAGSTALHYAACGGNQQC 239

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQ+LIA GASL AENANGWTPLMVARSWHR  LE++LSTQPE + +V PSPY++LPLMSI
Sbjct: 240 CQMLIARGASLIAENANGWTPLMVARSWHRNQLEEMLSTQPEHQPQVCPSPYISLPLMSI 299

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           +KIARECGWRN +SL TC D CVVCLER CTVAA+GC HEFCT CALYLCST  +   A+
Sbjct: 300 IKIARECGWRNEESLLTCQDTCVVCLERACTVAAEGCGHEFCTWCALYLCSTFCTSNAAQ 359

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLC 402
           G  GS+ CPLCRHGIVSF KLPGT+P+ +    +SLSL FCTCS +    E TS+ T LC
Sbjct: 360 GFPGSVTCPLCRHGIVSFAKLPGTKPMMKAIGRTSLSLAFCTCSGEE--PEPTSMITPLC 417

Query: 403 KPGFHCTRISPL 414
           KP F CTRISPL
Sbjct: 418 KPDFGCTRISPL 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253971055|gb|ACT37362.1| ankyrin repeat-rich protein [Nicotiana benthamiana]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/433 (74%), Positives = 357/433 (82%), Gaps = 23/433 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M+FLS+VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA
Sbjct: 9   MRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 68

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHH+IV+LL+ESGVDINLRNYRGQTALMQACQ+GHWEVV +LIL+KANIHRADYLNGGT
Sbjct: 69  QGHHKIVTLLLESGVDINLRNYRGQTALMQACQYGHWEVVQSLILFKANIHRADYLNGGT 128

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGHSRCIRLLLADYIPS+PN  N +RK+S    SI EFD+   H EV+     
Sbjct: 129 ALHLAALNGHSRCIRLLLADYIPSIPNFCNVMRKRSRNEDSIQEFDDFALH-EVINRPAD 187

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGHVES+QLLLDLGASV++        + + GAGST LHYAACGGNAQC
Sbjct: 188 GGITALHMAALNGHVESLQLLLDLGASVTKVTVEDGTTIDLIGAGSTPLHYAACGGNAQC 247

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQ+LIA GASL AENANGWTPLMVARSWHR GLE+ILS +PE +   LPSP+L LPLMSI
Sbjct: 248 CQLLIARGASLNAENANGWTPLMVARSWHRDGLEEILSARPERQPRPLPSPFLCLPLMSI 307

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           VKIARECGWR +DS STC DPCVVCLERKC VAA+GC HEFCT+CALYLCST+S+   A 
Sbjct: 308 VKIARECGWRTNDSPSTCLDPCVVCLERKCAVAAEGCFHEFCTRCALYLCSTSSTSTAAH 367

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRP-IKEITRTSSLSLTFCTCSVDHQVQESTSLTTGL 401
           GP GSIPCPLCRHGIVSF KL  T P IKE  RT SLSL FC C+ D   QE T+L T  
Sbjct: 368 GPPGSIPCPLCRHGIVSFIKLADTTPIIKEAART-SLSLPFCACTADG--QEPTTLETPF 424

Query: 402 CKPGFHCTRISPL 414
           CKP  +C+R SPL
Sbjct: 425 CKPDLYCSRFSPL 437

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143838|ref|XP_002325092.1| receptor-like kinase binding protein [Populus trichocarpa] gi|222866526|gb|EEF03657.1| receptor-like kinase binding protein [Populus trichocarpa]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/433 (74%), Positives = 355/433 (81%), Gaps = 23/433 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKFLSI+GNS GCSASGERLVSAARDGD+QEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFLSIMGNSLGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ESG+DINLRNYRGQTALMQACQHGHWEVVLTL+L+KANIHRADYLNGGT
Sbjct: 61  QGHHEIVSLLLESGIDINLRNYRGQTALMQACQHGHWEVVLTLMLFKANIHRADYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGHSRCIRLLLADYIPS+ + W  L K S    SI EFD      EV+     
Sbjct: 121 ALHLAALNGHSRCIRLLLADYIPSIADCWEILSKGSKDNESISEFDGSALR-EVINRPAD 179

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGHVESVQLLLDLGASV E        + + GAGST+LHYAACGGN+QC
Sbjct: 180 GGITALHMAALNGHVESVQLLLDLGASVYEVTVEDGTTIDLIGAGSTALHYAACGGNSQC 239

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQILIA GA+LTAENANGWTP MVA SWHR  LE+ILS+QP  R ++ PS YL++P MSI
Sbjct: 240 CQILIARGANLTAENANGWTPSMVACSWHRNELEEILSSQPGNRSQICPSSYLSIPFMSI 299

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           VKIARECGWRN+DSL TC D CVVCLERKCTVAA+GC HEFCT+CALYLCS   +  VA+
Sbjct: 300 VKIARECGWRNNDSLPTCEDACVVCLERKCTVAAEGCRHEFCTRCALYLCSAICTSTVAQ 359

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRP-IKEITRTSSLSLTFCTCSVDHQVQESTSLTTGL 401
           GP GS+ CPLCRHGIVSF KLPGT+P +K I RT SLSL+FCTCS +   Q+ TS+ T L
Sbjct: 360 GPTGSVACPLCRHGIVSFVKLPGTKPLVKAIART-SLSLSFCTCSGEE--QDFTSMKTLL 416

Query: 402 CKPGFHCTRISPL 414
           CKP F CTRISPL
Sbjct: 417 CKPDFQCTRISPL 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776684|emb|CAN70237.1| hypothetical protein VITISV_014614 [Vitis vinifera]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 324/434 (74%), Positives = 354/434 (81%), Gaps = 23/434 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M+FLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MRFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY--KANIHRADYLNG 118
           QGHHEIVSLL+ SGVDINLRNYRGQTALMQACQHGHWE       +  +  IHRADYLNG
Sbjct: 61  QGHHEIVSLLLVSGVDINLRNYRGQTALMQACQHGHWEGCSDTGSFPSQCRIHRADYLNG 120

Query: 119 GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-------- 170
           GTALHLAALNGHSRCIRLLLADYIPS+P+ WN LRK+SN+  SI EFDE           
Sbjct: 121 GTALHLAALNGHSRCIRLLLADYIPSIPDLWNILRKRSNREESISEFDEGALCQVINRPA 180

Query: 171 --HLEVLLHLTLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQ 221
              +  L    LNGHVE++QLLLDLGAS+SE        + + GAGST LHYAACGGNAQ
Sbjct: 181 DGGITALHMAALNGHVETLQLLLDLGASLSEVTVEDGTTIDLIGAGSTPLHYAACGGNAQ 240

Query: 222 CCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS 281
           CCQILIA GA L AENANGWTPLMVARSWHR  LE+ILSTQPE +   + S YL+LPLMS
Sbjct: 241 CCQILIARGAYLAAENANGWTPLMVARSWHRGWLEEILSTQPEVQSRTISSSYLSLPLMS 300

Query: 282 IVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVA 341
           IVKIARECGWRN+DSL TC DPCVVCLERKCTVAA+GCDHEFCT+CALYLCS NSS  V+
Sbjct: 301 IVKIARECGWRNNDSLPTCQDPCVVCLERKCTVAAQGCDHEFCTKCALYLCSMNSSSTVS 360

Query: 342 KGPIGSIPCPLCRHGIVSFDKLPGTRP-IKEITRTSSLSLTFCTCSVDHQVQESTSLTTG 400
           + P+GSI CPLCR+GIVSF KLPGT+P +KEI RT SLSL+FCTCS   +  E TSLTT 
Sbjct: 361 QCPLGSIACPLCRNGIVSFVKLPGTKPLVKEIART-SLSLSFCTCS--GEGPEPTSLTTP 417

Query: 401 LCKPGFHCTRISPL 414
            CKP FHC+RISPL
Sbjct: 418 FCKPDFHCSRISPL 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154268056|gb|ABS72112.1| ankyrin repeat-rich protein [Solanum tuberosum]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 324/434 (74%), Positives = 357/434 (82%), Gaps = 24/434 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           M+FLS+VGNSFGCSASGERLVSAARDGD+QEAKALL+YNPRLVRYSTFGVRNSPLHYSAA
Sbjct: 9   MRFLSLVGNSFGCSASGERLVSAARDGDIQEAKALLDYNPRLVRYSTFGVRNSPLHYSAA 68

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ESGVDINLRNYRGQTALMQACQ+GHWEVV  LIL+ ANIH+ADYLNGGT
Sbjct: 69  QGHHEIVSLLLESGVDINLRNYRGQTALMQACQYGHWEVVQILILFMANIHKADYLNGGT 128

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGHSRCIRLLLADYIPS+PN  N +RK+S   GSI EFD+   H EV+     
Sbjct: 129 ALHLAALNGHSRCIRLLLADYIPSIPNFCNVMRKRSRNEGSIQEFDDFALH-EVINRPAD 187

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGHVES+QLLLDLGASV++        + + GAGST LHYAACGGNAQC
Sbjct: 188 SGITALHMAALNGHVESLQLLLDLGASVTKVTVEDGTTIDLIGAGSTPLHYAACGGNAQC 247

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQ+LIA GASL AEN NGWT LMVARSWHR GLE+ILST+PE +   LPSP+L LPLMSI
Sbjct: 248 CQLLIARGASLNAENVNGWTSLMVARSWHRDGLEEILSTRPEKQPRPLPSPFLCLPLMSI 307

Query: 283 VKIARECGWRNSDSL-STCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVA 341
           VKIARECGWR  DS  STC DPCVVCLERKCTVAA+GC HEFCT+CALYLCST+S+   A
Sbjct: 308 VKIARECGWRTIDSPSSTCLDPCVVCLERKCTVAAEGCFHEFCTRCALYLCSTSSTSTAA 367

Query: 342 KGPIGSIPCPLCRHGIVSFDKLPGTRP-IKEITRTSSLSLTFCTCSVDHQVQESTSLTTG 400
            GP GSIPCPLCRHGIVSF KL  T P IKE  RT SLSL FC+C+ D   QE TSL   
Sbjct: 368 HGPSGSIPCPLCRHGIVSFVKLADTMPIIKEAART-SLSLPFCSCTADG--QEPTSLEAP 424

Query: 401 LCKPGFHCTRISPL 414
           LCKP  +C+R+SPL
Sbjct: 425 LCKPDLYCSRLSPL 438

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088380|ref|XP_002308433.1| predicted protein [Populus trichocarpa] gi|222854409|gb|EEE91956.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 313/431 (72%), Positives = 348/431 (80%), Gaps = 21/431 (4%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKF SI+GNSFGCSASGERLVSAARDGD+QEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFFSIIGNSFGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           QGHHEIVSLL+ESGVDINLRNYRGQTALMQA QHGHWEVVLTL+L+KANIHRADYLNGGT
Sbjct: 61  QGHHEIVSLLLESGVDINLRNYRGQTALMQAGQHGHWEVVLTLMLFKANIHRADYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGHSRCIRLLLADYIPS+ + W+ L K S   GSI EFD      EV+     
Sbjct: 121 ALHLAALNGHSRCIRLLLADYIPSIADCWDILSKGSRDNGSISEFDGSALR-EVINRPAD 179

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGHVESV LLLDLGAS  E        + + GAGST+LHYAACGGN QC
Sbjct: 180 GGITALHMAALNGHVESVLLLLDLGASAYEVTVEDGTTIDLIGAGSTALHYAACGGNPQC 239

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQILIA GASLTAENA GWTPLMVARSWHR  LE IL+TQ E + ++ PSPY+++P MSI
Sbjct: 240 CQILIARGASLTAENAKGWTPLMVARSWHRNELEVILTTQQENQSQICPSPYVSIPFMSI 299

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           VKIARECGWRN+DSL TC D CVVCLE KCTVAA+GC HEFCT+CALYLCST     VA+
Sbjct: 300 VKIARECGWRNNDSLPTCDDTCVVCLETKCTVAAEGCGHEFCTRCALYLCSTICISTVAQ 359

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRPIKEITRTSSLSLTFCTCSVDHQVQESTSLTTGLC 402
           GP GS+ CPLCRHGIVSF KLPGT+P+ +    +SLSL+FCTC+ +    +  S+TT L 
Sbjct: 360 GPTGSVACPLCRHGIVSFVKLPGTKPVVKAIARTSLSLSFCTCTGEE--PDFPSMTTPLR 417

Query: 403 KPGFHCTRISP 413
           KP F CT+ISP
Sbjct: 418 KPDFQCTKISP 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462695|ref|XP_004149076.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS32-like [Cucumis sativus] gi|449517425|ref|XP_004165746.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS32-like [Cucumis sativus]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 317/433 (73%), Positives = 350/433 (80%), Gaps = 22/433 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKFLS+VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFLSMVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
            GHHEIVSLL+ESGV+INLRNYRGQTALMQACQHGHWEVV TLIL+KANIHRADYLNGGT
Sbjct: 61  HGHHEIVSLLLESGVEINLRNYRGQTALMQACQHGHWEVVQTLILFKANIHRADYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV------ 174
           ALHLAALNGHSRCIRLLLADY+PS P  WN L   SN    + +F+       V      
Sbjct: 121 ALHLAALNGHSRCIRLLLADYVPSTPKFWNMLHGSSNNEEQVSKFEFGALKEVVNRTSDG 180

Query: 175 ---LLHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQCC 223
               LH+  LNGHV+SVQLLLDLGAS  +        + + GAGST+LHYAACGGNAQCC
Sbjct: 181 GITALHMAALNGHVDSVQLLLDLGASAFQVTVEDGTTIDLIGAGSTALHYAACGGNAQCC 240

Query: 224 QILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG-RLEVLPSPYLALPLMSI 282
           Q+LIA GA LTA+NANGWTPLMVARSWHR  L +ILS +       ++PSPYL LPLMSI
Sbjct: 241 QMLIARGADLTAQNANGWTPLMVARSWHRDWLVEILSREAGAVATNLVPSPYLTLPLMSI 300

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           V+IARECGWR+ DSL TC DPCVVCLER+CTVAA+GCDHEFCT+CALYLCSTN +  V+ 
Sbjct: 301 VRIARECGWRSCDSLLTCQDPCVVCLERECTVAAQGCDHEFCTRCALYLCSTNCTSSVSH 360

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRPI-KEITRTSSLSLTFCTCSVDHQVQESTSLTTGL 401
           GP GSI CPLCR+GIVSF KLP T+PI KEITRT SLSL+FCTCS   +  E  +LTT L
Sbjct: 361 GPTGSIACPLCRNGIVSFIKLPRTKPIAKEITRT-SLSLSFCTCS--GEAPEPPTLTTPL 417

Query: 402 CKPGFHCTRISPL 414
           CKP F C+RISPL
Sbjct: 418 CKPEFTCSRISPL 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479903|ref|XP_003610237.1| Ankyrin repeat-rich protein [Medicago truncatula] gi|355511292|gb|AES92434.1| Ankyrin repeat-rich protein [Medicago truncatula]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 310/452 (68%), Positives = 345/452 (76%), Gaps = 51/452 (11%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKFLS+VGNSFGCSASGERLVSAARDGD+QEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFLSLVGNSFGCSASGERLVSAARDGDVQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
            GHHEIV LL+ESGVDINLRNYRGQTALMQACQHGHWEVV TLI++KANIH+ DYLNGGT
Sbjct: 61  HGHHEIVYLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLIIFKANIHKTDYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL---- 176
           ALHLAALNGH+RCIRL+L DYIPS+PN W+ L  ++    SI EFD+RY H EVLL    
Sbjct: 121 ALHLAALNGHTRCIRLILTDYIPSIPNFWDIL--QAGDQISISEFDQRYSHSEVLLLSSI 178

Query: 177 ----------------------------------HLT-LNGHVESVQLLLDLGASVSEY- 200
                                             H+  LNGHVESVQLLLDLGASVSE  
Sbjct: 179 INCCSKLILSLNGCIQSGVCEVINKTSDGGITALHMAALNGHVESVQLLLDLGASVSEVT 238

Query: 201 ------LSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTG 254
                 + + G+GST LHYAACGGNAQCCQ+LIA GASLTAENANGWTPLMVARSWHR+ 
Sbjct: 239 AEDGTTIDLIGSGSTPLHYAACGGNAQCCQLLIAKGASLTAENANGWTPLMVARSWHRSW 298

Query: 255 LEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTV 314
           LED L   P   L+VLPSPY++LPLMSIVKIARECGWR S+    C DPC VCLERKC V
Sbjct: 299 LEDTLKEPPAENLQVLPSPYISLPLMSIVKIARECGWRTSELAPICLDPCAVCLERKCMV 358

Query: 315 AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEITR 374
           A +GCDHEFCTQCALYLCSTNS+     GP GSI CPLCRH IVSF KLP TRP+ ++ +
Sbjct: 359 AVEGCDHEFCTQCALYLCSTNSTSTRTNGPPGSIACPLCRHSIVSFVKLPDTRPLPKVMQ 418

Query: 375 --TSSLSLTFCTCSVDHQVQESTSLTTGLCKP 404
             T++LSLTFCTCS +  + +ST +TT  CKP
Sbjct: 419 RSTTNLSLTFCTCSSE-VLGDSTDMTTPFCKP 449

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547802|ref|XP_003542295.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS32-like [Glycine max]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 313/423 (73%), Positives = 348/423 (82%), Gaps = 24/423 (5%)

Query: 1   MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
           MKFLS+VGNSFGCSASGERLVSAARDGD+QEAKALLEYNPRL RYSTFGVRNSPLHYSAA
Sbjct: 1   MKFLSLVGNSFGCSASGERLVSAARDGDVQEAKALLEYNPRLARYSTFGVRNSPLHYSAA 60

Query: 61  QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
            GHHEIV LL+ESGVDINLRNYRGQTALMQACQHGHWEVV TL+++ ANIH+ADYLNGGT
Sbjct: 61  HGHHEIVYLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLVIFNANIHKADYLNGGT 120

Query: 121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
           ALHLAALNGH+RCIRL+LADYIPSVPN WN L+   +K  SI EFD+     EV+     
Sbjct: 121 ALHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHK--SISEFDQSGL-CEVINRTAD 177

Query: 176 -----LHL-TLNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                LH+  LNGHVESVQLLLDLGASVSE        + + G+GST LHYAACGGN QC
Sbjct: 178 GGITALHMAALNGHVESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQC 237

Query: 223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI 282
           CQ+LIA GA+LTAENANGWTPLMVARSWHR  LEDIL T P   L+VLPSPY++LPLMSI
Sbjct: 238 CQLLIAKGANLTAENANGWTPLMVARSWHRDWLEDILKTPPADPLQVLPSPYISLPLMSI 297

Query: 283 VKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAK 342
           V+IARECGWR +D L+ C DPC VCLERKCTVA +GCDHEFCTQCALYLCSTNS+     
Sbjct: 298 VRIARECGWRTND-LAPCLDPCAVCLERKCTVAVEGCDHEFCTQCALYLCSTNSTSTTTT 356

Query: 343 GPIGSIPCPLCRHGIVSFDKLPGTRPI-KEITRTSSLSLTFCTCSVDHQVQESTSLTTGL 401
           GP GSI CPLCRHGIVSF KLP  RP+ KE+ RTS+LSLTFCTCS +  + +S+ +TT  
Sbjct: 357 GPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTFCTCSSE-VLGDSSDMTTPF 415

Query: 402 CKP 404
           CKP
Sbjct: 416 CKP 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.864	0.707	0.553	2e-104
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.619	0.511	0.726	3.2e-104
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.607	0.566	0.344	2.3e-32
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.607	0.559	0.330	7.7e-30
MGI|MGI:3045243	993	Ankrd44 "ankyrin repeat domain	0.709	0.300	0.306	4.1e-18
UNIPROTKB|Q8N8A2	993	ANKRD44 "Serine/threonine-prot	0.704	0.298	0.310	1.2e-17
UNIPROTKB|F1P4A9	1167	TNKS2 "Uncharacterized protein	0.571	0.205	0.305	2.8e-15
ZFIN|ZDB-GENE-090421-1	2607	ankhd1 "ankyrin repeat and KH	0.540	0.087	0.322	4.4e-15
ZFIN|ZDB-GENE-081104-19	1929	si:ch211-173b16.3 "si:ch211-17	0.55	0.119	0.299	6.7e-15
MGI|MGI:2154278	712	Ankrd6 "ankyrin repeat domain	0.580	0.342	0.299	8e-15

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 211/381 (55%), Positives = 270/381 (70%)

Query:     7 VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
             +GNSFGCSASGERLVSAARDGD  EAK LL+ NP L +YSTFG  NSPLH++AA+GH+EI
Sbjct:     1 MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query:    67 VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
             V LL+E+G D+N RNY GQTALMQAC++GHWEVV TL+L++ N+ RADYL G TALH AA
Sbjct:    61 VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAA 120

Query:   127 LNGHSRCIRLLLADYIPS-----VPNAWNRLRKKSNKTGSILEFDERYFHLEVL-LHLT- 179
             +NGH+RCIRL+LAD++PS     +P       K  ++  ++ +F  +     +  LH+  
Sbjct:   121 VNGHARCIRLVLADFLPSDKLNSLPETGVVTAKNKSEQSALSKFVNKAADGGITALHMAA 180

Query:   180 LNGHVESVQLLLDLGASVS----EY---LSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
             LNG  + VQLLLDL A+VS     Y   + + GAGST LHYAACGGN +CCQIL+A GA 
Sbjct:   181 LNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQILLARGAR 240

Query:   233 LTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLP-SPYLALPLMSIVKIARECGW 291
                 N NGW P+ +AR W R  LE +LS   +  +   P S YL+LPL+SI+ IARE G 
Sbjct:   241 KMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNIAREFGL 300

Query:   292 RNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCP 351
             +++ ++    D C VCLER CTVAA+GC+H+ C +CALYLCS+++   V  GP GSIPCP
Sbjct:   301 QSA-TIGDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPPGSIPCP 359

Query:   352 LCRHGIVSFDKLPG--TRPIK 370
             LCRHGI +F +LP   TR +K
Sbjct:   360 LCRHGITAFKRLPSSLTREMK 380

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 205/282 (72%), Positives = 233/282 (82%)

Query:     1 MKFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA 60
             M+FLS+VGNSFGCSASGERLVSAARDGDLQEAKALL+YNPRL RYSTFGVRNSPLHYSAA
Sbjct:     1 MRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAA 60

Query:    61 QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
             QGHHEIVSLL+ESGVDINLRNYRGQTALMQACQHGHWEVVL LIL+ ANIHR+DYLNGGT
Sbjct:    61 QGHHEIVSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGT 120

Query:   121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----- 175
             ALHLAALNGH RCIR+LL++YIPSVPN W+ L+ K  KT S+  FD    H EV+     
Sbjct:   121 ALHLAALNGHPRCIRILLSEYIPSVPNCWSLLKNK--KT-SVAGFDSSVLH-EVINRAAD 176

Query:   176 -----LHLT-LNGHVESVQLLLDLGASVSEY-------LSVSGAGSTSLHYAACGGNAQC 222
                  LH+  LNGH+E+VQLLLDLGASV++        + + GAGST+LHYA+CGGN QC
Sbjct:   177 GGITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQC 236

Query:   223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE 264
             CQ+LI+ GA L A N+NGWTP+MVARSWHR  LE+IL+   E
Sbjct:   237 CQLLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTE 278

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 285 (105.4 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
 Identities = 94/273 (34%), Positives = 130/273 (47%)

Query:     7 VGNSFGCSASGER--LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH 64
             +G+   C+ +G+      AA+ GDL    ALL  +P L R +T   R S LH +AA G  
Sbjct:     1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query:    65 EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL 124
             E++S+ ++ G   +  N   QT LM A  HG  + VL L+   ANI   D ++  T LH 
Sbjct:    61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120

Query:   125 AALNGHSRCIRLLLAD-YIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-G 182
             AA  GH  C++ +LA      V ++W   R  + +       D+   H    LHL    G
Sbjct:   121 AAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVR-------DD---HGATPLHLAARQG 170

Query:   183 HVESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
                 VQ+LL+ GA VS      G  GSTSLH AA  GN  C + L+A GA     ++ G 
Sbjct:   171 RPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGR 230

Query:   242 TPLMVARSWHRTGLEDILS-TQPEGRLEVLPSP 273
              P  VA   +      +L+ T  E    V PSP
Sbjct:   231 IPYSVALKRNHGACAALLNPTSAEPM--VWPSP 261

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
 Identities = 90/272 (33%), Positives = 129/272 (47%)

Query:     7 VGNSFGCSASGER-LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHE 65
             +G S  C +  E  + ++ + GD+   + ++   P L+  +T   R+S LH +AA G  E
Sbjct:     1 MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query:    66 IVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
             I+SLL+E   + +L N   QT LM A  +G    V  L    ANI   D +N  T LH A
Sbjct:    61 ILSLLLERFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYA 120

Query:   126 ALNGHSRCIRLLLADYIPSVPNA--WNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGH 183
             A  GH+ C++ +L+    S P A  W   R  + +       D++       LHL     
Sbjct:   121 AYYGHANCVQAILSA-AQSSPVAVHWGYARFVNIR-------DDKG---ATPLHLAARQR 169

Query:   184 -VESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
               E V +LLD G+ V    SV G+ GST LH AA  G+  C + L+A GA     +A+G 
Sbjct:   170 RPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAARSGSIDCVRKLLAWGADRLQRDASGR 229

Query:   242 TPLMVARSWHRTGLEDILSTQPEGRLEVLPSP 273
              P +VA   H+ G    L         V PSP
Sbjct:   230 IPYVVAMK-HKHGACGALLNPSSAEPLVWPSP 260

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

MGI|MGI:3045243 Ankrd44 "ankyrin repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 4.1e-18, P = 4.1e-18
 Identities = 101/330 (30%), Positives = 153/330 (46%)

Query:    23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
             AA  G  Q  + LLE        S  G   SPLH +A  GHH+ + +L++S VD+++R+ 
Sbjct:   539 AAAYGHRQCLELLLERTNTGFEESDGGALKSPLHLAAYNGHHQALEVLLQSLVDLDIRDE 598

Query:    83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL--AD 140
             +G+TAL  A   GH E V  L+   A+I   D +   T LH + +NGH+ C+RLLL  AD
Sbjct:   599 KGRTALYLAAFKGHTECVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLETAD 658

Query:   141 Y--IPSVPNAWNRLRKKS-------NKTGSILEFDERYFHLEVL----LHL-TLNGHVES 186
                +  V +A  +            +    +LE +     ++++    LH   + GH E 
Sbjct:   659 NPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIVGCTALHRGIMTGHEEC 718

Query:   187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS---LTAENANGWTP 243
             VQ+LL+  AS+   L     G T LHYAA  G+A     L+ +  S      ++  G+TP
Sbjct:   719 VQMLLEQEASI---LCKDSRGRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQGYTP 775

Query:   244 LMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDP 303
             L  A         ++L  Q   R + + +P+  L   +I+     C    +  L    DP
Sbjct:   776 LHWACYNGNENCIEVLLEQKCFR-KFIGNPFTPLHC-AIINGHESC----ASLLLGAIDP 829

Query:   304 CVV-CLERK--CTV-AAKGCDHEFCTQCAL 329
              +V C + K   T+ AA   DH  C Q  L
Sbjct:   830 SIVSCRDDKGRTTLHAAAFGDHAECLQLLL 859

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N8A2 ANKRD44 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 103/332 (31%), Positives = 148/332 (44%)

Query:    23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
             AA  G  Q  + LLE        S  G   SPLH +A  GHH+ + +L++S VD+++R+ 
Sbjct:   539 AAAYGHRQCLELLLERTNSGFEESDSGATKSPLHLAAYNGHHQALEVLLQSLVDLDIRDE 598

Query:    83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
             +G+TAL  A   GH E V  LI   A+I   D +   T LH + +NGH+ C+RLLL   I
Sbjct:   599 KGRTALDLAAFKGHTECVEALINQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLE--I 656

Query:   143 PSVPNAWNRLRKKSNKT--------GSI------LEFDERYFHLEVL----LHL-TLNGH 183
                P A + ++    +T        G I      LE +     +++L    LH   + GH
Sbjct:   657 ADNPEAVD-VKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDTVDILGCTALHRGIMTGH 715

Query:   184 VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS---LTAENANG 240
              E VQ+LL+   S+   L     G T LHYAA  G+A     L+ M  S      ++  G
Sbjct:   716 EECVQMLLEQEVSI---LCKDSRGRTPLHYAAARGHATWLSELLQMALSEEDCCFKDNQG 772

Query:   241 WTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTC 300
             +TPL  A         ++L  Q   R + + +P+  L   +I+     C    S  L   
Sbjct:   773 YTPLHWACYNGNENCIEVLLEQKCFR-KFIGNPFTPLHC-AIINDHGNCA---SLLLGAI 827

Query:   301 PDPCVVCLERKCTV---AAKGCDHEFCTQCAL 329
                 V C + K      AA   DH  C Q  L
Sbjct:   828 DSSIVSCRDDKGRTPLHAAAFADHVECLQLLL 859

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P4A9 TNKS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 78/255 (30%), Positives = 125/255 (49%)

Query:    12 GCSASGE---RLVSAARDGDLQEAKALLEYNPRLVRY-STFGVRNSPLHYSAAQGHHEIV 67
             GC ++ E    L  A R+GD++  K L+   P  V    T G ++SPLH++A  G  ++V
Sbjct:    18 GCGSAEEPARELFEACRNGDVERVKRLVR--PENVNSRDTAGRKSSPLHFAAGFGRKDVV 75

Query:    68 SLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAAL 127
               L++SG +++ R+  G   L  AC  GH EVV  L+ + A+ +  D  N  T LH AA+
Sbjct:    76 EYLLQSGANVHARDDGGLIPLHNACSFGHAEVVNLLLRHGADPNARDNWNY-TPLHEAAI 134

Query:   128 NGHSR-CIRLLLADYIPSVPNAWNR--LRKKSNKTGSILEFDERYFHLEVLLHLTLNGHV 184
              G +  CI LL     P++ N   R  L        ++L  +   +  + LL    +G+ 
Sbjct:   135 KGKTDVCIVLLQHGAEPTIRNTDGRTALDLADPSAKAVLTGE---YKKDELLESARSGNE 191

Query:   185 ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
             E +  LL    +V+ + S  G  ST LH AA     +  Q+L+  GA + A++     PL
Sbjct:   192 EKMMSLLT-PLNVNCHAS-DGRKSTPLHLAAGYNRVKIVQLLLQHGADVHAKDKGDLVPL 249

Query:   245 MVARSWHRTGLEDIL 259
               A S+    + ++L
Sbjct:   250 HNACSYGHYEVTELL 264

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IEA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-090421-1 ankhd1 "ankyrin repeat and KH domain containing 1" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 82/254 (32%), Positives = 124/254 (48%)

Query:    17 GERLVSAARDGDLQE-AKALLEYNPRLVRYSTFGVRN--SPLHYSAAQGHHEIVSLLIES 73
             GE L+  A      E A+ LL  +  +      G++   +PL  +A+ G+ +IV LL+  
Sbjct:   233 GESLLCLACSAGYYELAQVLLAMHANV---EDRGIKGDITPLMAAASGGYVDIVKLLLVH 289

Query:    74 GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
             G D+N ++  G TAL  AC  G  +VV  L+   ANI   +  NG T L  AA  GH   
Sbjct:   290 GADVNAQSSTGNTALTYACAGGFLDVVKVLLKEGANIEDHNE-NGHTPLMEAASAGHVEV 348

Query:   134 IRLLLADYIPSVPNAWNRLRKKS----------NKTGSILEF--DERYFHLEV---LLHL 178
              R+LL +Y   +    N  ++ +          +    +LE   D+ +   E+   L+  
Sbjct:   349 ARVLL-EYGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEA 407

Query:   179 TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENA 238
              ++GHVE  +LLLD GA V+     + +  + L  AACGG+ +   +LI  GA+L   N 
Sbjct:   408 CMDGHVEVARLLLDSGAQVN---MPADSFESPLTLAACGGHVELAALLIERGANLEEVND 464

Query:   239 NGWTPLM-VARSWH 251
              G+TPLM  AR  H
Sbjct:   465 EGYTPLMEAAREGH 478

GO:0003723 "RNA binding" evidence=IEA

GO:0060047 "heart contraction" evidence=IMP

ZFIN|ZDB-GENE-081104-19 si:ch211-173b16.3 "si:ch211-173b16.3" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 76/254 (29%), Positives = 123/254 (48%)

Query:    21 VSAARDGD-LQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
             +  A  GD L   + LL+YN  +   +   +  +PLH +A  GHH +  +L++ G   N 
Sbjct:   303 IHMAAQGDHLDCIRQLLQYNAEIDDITLDHL--TPLHVAAHCGHHRVAKVLLDKGAKPNT 360

Query:    80 RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
             R   G T L  AC+  H  V+  L+ + A++      +G T LH+++  GH   +++L+ 
Sbjct:   361 RALNGFTPLHIACKKNHMRVMDLLLKHSASLEAVTE-SGLTPLHVSSFMGHLNIVKILMQ 419

Query:   140 DYIPSVPNAWN-RLRKK---SNKTGSI-LEF--------DERYFHLEVLLHLTLN-GHVE 185
                 + PNA N ++      +++ G   +EF        D +    +  LH     GH E
Sbjct:   420 K--GASPNASNVKVETPLHMASRAGHCEVEFLLQNAAPVDAKAKDDQTPLHCASRMGHNE 477

Query:   186 SVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLM 245
              V+LLL+  A+ +   S + AG T LH AA  G+ Q   IL+ M A LT     G+TPL 
Sbjct:   478 MVKLLLEHKANSN---STTTAGHTPLHIAAREGHTQTASILLDMNAQLTKMTKKGFTPLH 534

Query:   246 VARSWHRTGLEDIL 259
             VA  + +  +  +L
Sbjct:   535 VAAKYGKVDVAVLL 548

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:2154278 Ankrd6 "ankyrin repeat domain 6" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 79/264 (29%), Positives = 129/264 (48%)

Query:    14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES 73
             +A  ERL+ AA  G  +    L+    + V  +  G   +PLH +A +GH  +V +L+++
Sbjct:     8 AALSERLLIAAYKGQTENVVQLINKGAK-VAVTKHG--RTPLHLAANKGHLSVVQILLKA 64

Query:    74 GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
             G D+++++   QTAL +A   G+ E++  LI     + R D  +G TALH AA +G S+ 
Sbjct:    65 GCDLDVQDDGDQTALHRATVVGNTEILTALIREGCALDRQDK-DGNTALHEAAWHGFSQS 123

Query:   134 IRLLL---ADYIP--SVPNAWNRL---RKKSNKTGSIL----EFDERYFHLEVLLHLTLN 181
              +LL+   A+ +      N    L      S  T  +L      D +    +  LH+   
Sbjct:   124 AKLLVKAGANVLARNKAGNTALHLACQNSHSQSTRILLLGGSRADLKNNAGDTCLHVAAR 183

Query:   182 -GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
               H+  V+LLL+   SV E    + AG T+LH AA   + +  ++L+  GA  T  N  G
Sbjct:   184 YNHLSVVRLLLNAFCSVHEK---NQAGDTALHVAAALNHKKVVKVLLEAGADTTIVNNAG 240

Query:   241 WTPLMVARSWHRTGLEDILSTQPE 264
              TPL  AR  +   +  +L+  P+
Sbjct:   241 QTPLETARYHNNPEVALLLTKAPQ 264

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IGI;IDA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NLQ8	XB32_ARATH	6, ., 3, ., 2, ., -	0.6771	0.9142	0.7559	yes	no
Q6KAE5	XB32_ORYSJ	6, ., 3, ., 2, ., -	0.6450	0.9761	0.8266	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017060001 SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (509 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	5e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	0.004
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.6 bits (246), Expect = 5e-25
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 23/141 (16%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            +PLH +A+ GH E+V LL+E+G D+N ++  G+T L  A ++GH E+V  L+   A+++
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
             D  +G T LHLAA NG+   ++LLL         A    R K  +T            
Sbjct: 68  ARDK-DGNTPLHLAARNGNLDVVKLLLKH------GADVNARDKDGRT------------ 108

Query: 172 LEVLLHL-TLNGHVESVQLLL 191
               LHL   NGH+E V+LLL
Sbjct: 109 ---PLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  AA++G+L+  K LLE    +    T    ++ LH +A  G+ EIV LL+E G D+N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT----DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           ++  G TAL  A ++G+ E+V  L+ + A+I+  D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 26/151 (17%)

Query: 78  NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
           N R+  G+T L  A  +GH EVV  L+   A+++  D  +G T LHLAA NGH   ++LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL 59

Query: 138 LADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGAS 196
           L         A    R K   T                LHL   NG+++ V+LLL  GA 
Sbjct: 60  LEK------GADVNARDKDGNT---------------PLHLAARNGNLDVVKLLLKHGAD 98

Query: 197 VSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
           V+        G T LH AA  G+ +  ++L+
Sbjct: 99  VNA---RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 55  LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           LH +A  G+ E+V LL+E G D+NL +    TAL  A ++G+ E+V  L+ + A+++  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 115 YLNGGTALHLAALNGHSRCIRLLL 138
             +G TALHLAA NG+   ++LLL
Sbjct: 59  K-DGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 25/132 (18%)

Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
           +G T LHLAA NGH   ++LLL     +  NA    +    +T                L
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLL--ENGADVNA----KDNDGRT---------------PL 44

Query: 177 HL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
           HL   NGH+E V+LLL+ GA V+   +    G+T LH AA  GN    ++L+  GA + A
Sbjct: 45  HLAAKNGHLEIVKLLLEKGADVN---ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101

Query: 236 ENANGWTPLMVA 247
            + +G TPL +A
Sbjct: 102 RDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 28/274 (10%)

Query: 5   SIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHY-SAAQGH 63
           +I+ N    + +   L+ A R+ DL+   +LL Y+      S    +N+PLH+ S A   
Sbjct: 229 AIIDNRSNINKNDLSLLKAIRNEDLE--TSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL 286

Query: 64  HEIVSLLIESGVDINLRNYRGQTALMQACQHGH-WEVVLTLILYKANIHRADYLNGGTAL 122
             +V  L+E G D+N +N +G+T L    ++G+  E + TLI+  A+++ AD L   T L
Sbjct: 287 SRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-ITPL 345

Query: 123 HLAA-LNGHSRCIRLLLA--------DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           H A+ L+ +   +  LL         DY    P  +  +R       ++L++      L 
Sbjct: 346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS 405

Query: 174 ----VLLHLTLNGH--VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQ--CCQI 225
                 LH  L G     SV+ L+D GA+V+   S +   ST LHY AC  N +    ++
Sbjct: 406 QKIGTALHFALCGTNPYMSVKTLIDRGANVN---SKNKDLSTPLHY-ACKKNCKLDVIEM 461

Query: 226 LIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           L+  GA + A N     PL++A  +H  G+ +IL
Sbjct: 462 LLDNGADVNAINIQNQYPLLIALEYH--GIVNIL 493

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 22  SAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGH-----HEIVSLLIESGV- 75
           SAA  GD +  K LL     +      G  ++PLH +A  G+      E+  LL+E+G  
Sbjct: 79  SAASKGDDKIVKLLLASGADVNAKDADG--DTPLHLAALNGNPPEGNIEVAKLLLEAGAD 136

Query: 76  --DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
               NLR+  G T L  A  +G  ++V  L+   A+ +  +   G TAL  AA NG    
Sbjct: 137 LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN-SYGVTALDPAAKNGRIEL 195

Query: 134 IRLLLADYIPSVPNAWNRLRKKSNK 158
           ++LLL   +      +N     +  
Sbjct: 196 VKLLLDKGLHLSLLKFNLEGVANAN 220

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 176 LHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NG++E V+LLL+ GA V+      G   T+LH AA  GN +  ++L+  GA + 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN-----LGDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 235 AENANGWTPLMVA 247
           A++ +G T L +A
Sbjct: 56  AKDKDGNTALHLA 68

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 51  RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
             + LH +A  G  E+V  L+E GVDIN  +  G TAL  A ++G+ EV+  L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.3 bits (147), Expect = 9e-12
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 27/117 (23%)

Query: 122 LHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TL 180
           LHLAA NG+   ++LLL           N     +                   LHL   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD-----VNLGDTDT------------------ALHLAAR 37

Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
           NG++E V+LLL+ GA V+   +    G+T+LH AA  GN +  ++L+  GA +  ++
Sbjct: 38  NGNLEIVKLLLEHGADVN---AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 52/191 (27%), Positives = 75/191 (39%), Gaps = 30/191 (15%)

Query: 16  SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV 75
               L  A           L     R +       R  PLH +A++G  +IV LL+ SG 
Sbjct: 39  LNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRL-PLHSAASKGDDKIVKLLLASGA 97

Query: 76  DINLRNYRGQTALMQACQHGH-----WEVVLTLILYKANIHRADY--LNGGTALHLAALN 128
           D+N ++  G T L  A  +G+      EV   L+   A++   +    +G T LH AALN
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESV 187
           G +  + LLL                   + G+       Y      L     NG +E V
Sbjct: 158 GDADIVELLL-------------------EAGADPNSRNSYGVT--ALDPAAKNGRIELV 196

Query: 188 QLLLDLGASVS 198
           +LLLD G  +S
Sbjct: 197 KLLLDKGLHLS 207

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.7 bits (141), Expect = 8e-10
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 20  LVSAARDGDLQE-----AKALLEYNPRLVRYSTFGVR-NSPLHYSAAQGHHEIVSLLIES 73
           L  AA +G+  E     AK LLE    L   +      N+PLH++A  G  +IV LL+E+
Sbjct: 110 LHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
           G D N RN  G TAL  A ++G  E+V  L+    ++    +   G A    +       
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNL 229

Query: 134 IRLLLA 139
             L++A
Sbjct: 230 TSLIIA 235

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 58/220 (26%), Positives = 89/220 (40%), Gaps = 27/220 (12%)

Query: 52  NSPLHYSAAQGHH---EIVSLLIESGVDINLRNYRGQTALMQACQHGH-WEVVLTLILYK 107
            +PLH           +IV LL+E+G D+N     G T L     +    +V+  LI   
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG 107

Query: 108 ANIHRADYLNGGTALH--LAALNGHSRCIRLLL---ADYIPSVPNAWNR-----LRKKSN 157
           A+++  D   G T LH  L+  N + + IRLLL   AD   +  + +       L K  N
Sbjct: 108 ADVNAKD-KVGRTPLHVYLSGFNINPKVIRLLLRKGAD--VNALDLYGMTPLAVLLKSRN 164

Query: 158 KTGSILEF------DERY--FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST 209
               +L        D          LLH  L       +++ +L  +  +  +    G+T
Sbjct: 165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT 224

Query: 210 SLHYAACGGNAQCCQI--LIAMGASLTAENANGWTPLMVA 247
            LH  A G + +   +  L+  G S+ A N  G TPL  A
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 86  TALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           TAL +A   G  E+V  L+    +I+R D  +G TALH+AA NG+   ++LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%)

Query: 53  SPLHYSAAQGHH-----EIVSLLIESGVDINLRNYRGQTALMQACQH--GHWEVVLTLIL 105
           +PLHY +   ++     EIV LL+E G ++N  +  G T L+ A       + +V  L+ 
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD 129

Query: 106 YKANIHRADYLNGGTALHLAALNGH--SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSIL 163
             AN+      +G   LHL   +     + ++LL+ D    + NA NR+    +    I 
Sbjct: 130 NGANV-NIKNSDGENLLHLYLESNKIDLKILKLLI-DKGVDI-NAKNRVNYLLSYGVPIN 186

Query: 164 EFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAA 215
             D   F    L +   N + E V+ LLDLGA+ +    V+  G T LH A 
Sbjct: 187 IKDVYGF--TPLHYAVYNNNPEFVKYLLDLGANPN---LVNKYGDTPLHIAI 233

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 26/183 (14%)

Query: 65  EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL 124
           +++  +++ G+D+N+++   +T L  A + G  E +  L  Y A+++  D  NG   +H+
Sbjct: 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHI 163

Query: 125 AALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHV 184
           A  +     I+LLL         A+     K N   S L     Y            G  
Sbjct: 164 AIKHNFFDIIKLLLEK------GAY--ANVKDNNGESPLHNAAEY------------GDY 203

Query: 185 ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
             ++LL+D G  +         G T LH A    N    ++LI   AS+  ++ +G TPL
Sbjct: 204 ACIKLLIDHGNHIMNKCK---NGFTPLHNAII-HNRSAIELLIN-NASINDQDIDGSTPL 258

Query: 245 MVA 247
             A
Sbjct: 259 HHA 261

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 19/198 (9%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNY--RGQTALMQACQHGHWEVVLTLILYKANI 110
           S L          ++  L+             +    L  A         L L L     
Sbjct: 6   SALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRH 65

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG-SILEFDERY 169
             A  L+G   LH AA  G  + ++LLLA    +  NA        +  G + L      
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLAS--GADVNA-------KDADGDTPLHLAALN 116

Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
            +          G++E  +LLL+ GA +         G+T LH+AA  G+A   ++L+  
Sbjct: 117 GNPP-------EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 230 GASLTAENANGWTPLMVA 247
           GA   + N+ G T L  A
Sbjct: 170 GADPNSRNSYGVTALDPA 187

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  A + GDL+  K L EY   +      G    P+H +      +I+ LL+E G   N+
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNG--CYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           ++  G++ L  A ++G +  +  LI +  +I      NG T LH A ++  S  I LL+
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNRS-AIELLI 242

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 39/259 (15%)

Query: 33  KALLEYNPRLVRYSTFGVRNSPLH-YSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA 91
           + LLE    +      G   +PLH Y       +++ LLI++G D+N ++  G+T L   
Sbjct: 67  RLLLEAGADVNAPERCGF--TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL-HV 123

Query: 92  CQHG---HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC----IRLLLADYIPS 144
              G   + +V+  L+   A++  A  L G T   LA L          +RLL+ D    
Sbjct: 124 YLSGFNINPKVIRLLLRKGADV-NALDLYGMTP--LAVLLKSRNANVELLRLLI-DAGAD 179

Query: 145 VPNAWNRLR----------KKSNK-----TGSILEFDERYFHLEVLLHLTLNGHVESVQL 189
           V    +R R          K   +       +  +           LH    G      L
Sbjct: 180 VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL 239

Query: 190 LLDL---GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL-- 244
           +L L   G S++     +  G T LHYAA   N + C+ LIA+GA + A +++G TPL  
Sbjct: 240 VLPLLIAGISINA---RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL 296

Query: 245 MVARSWHRTGLEDILSTQP 263
           MV  +  R  +   L+  P
Sbjct: 297 MVRNNNGRA-VRAALAKNP 314

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V+ L+  GV IN+++  G T L  A  + + E V  L+   AN +  +   G T LH+A 
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK-YGDTPLHIAI 233

Query: 127 LNGHSRCIRLLL 138
           LN +    +LLL
Sbjct: 234 LNNNKEIFKLLL 245

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 42/189 (22%)

Query: 10  SFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSL 69
           S G +A  E L+ A  D D+ ++K                   +PLH +A++G+ + V +
Sbjct: 534 STGNAALLEELLKAKLDPDIGDSKG-----------------RTPLHIAASKGYEDCVLV 576

Query: 70  LIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG 129
           L++   ++++R+  G TAL  A    H ++    ILY      +D    G  L  AA   
Sbjct: 577 LLKHACNVHIRDANGNTALWNAISAKHHKIF--RILYHFA-SISDPHAAGDLLCTAAKRN 633

Query: 130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQ 188
               ++ LL                   K G  L  D         L + +   HV+ V+
Sbjct: 634 DLTAMKELL-------------------KQG--LNVDSEDHQGATALQVAMAEDHVDMVR 672

Query: 189 LLLDLGASV 197
           LL+  GA V
Sbjct: 673 LLIMNGADV 681

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 35 LLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA 91
          LLE+ P  +  +     N+PLH +A  G  E+V  L++ GVD+NLR+  G TAL  A
Sbjct: 1  LLEHGPIDLNATDGN-GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
            +PLHY+    + E V  L++ G + NL N  G T L  A  + + E+   L+    +I
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%)

Query: 59  AAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNG 118
           A+ G+  ++  L+++ +D ++ + +G+T L  A   G+ + VL L+ +  N+H  D  NG
Sbjct: 533 ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-ANG 591

Query: 119 GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL 178
            TAL  A    H +  R+L      S P+A           G +L    +          
Sbjct: 592 NTALWNAISAKHHKIFRILYHFASISDPHA----------AGDLLCTAAK---------- 631

Query: 179 TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
                + +++ LL  G +V    S    G+T+L  A    +    ++LI  GA +   N
Sbjct: 632 --RNDLTAMKELLKQGLNVD---SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           LL+ G       +  G G+T LH AA  G  +  Q L+  G  L   +++G T L +A
Sbjct: 1   LLEHGPID--LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRN 81
          N+PLH +A  GH E+V LL+E+G D+N R+
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 59  AAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNG 118
           AA G      +L+  G D N R+Y G+T L  AC +GH +VV  L+ + A+    D  +G
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-DG 148

Query: 119 GTALHLAALNGHSRCIRLLL 138
            T L LA  NG    ++LL 
Sbjct: 149 KTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 35/231 (15%)

Query: 20  LVSAARDGDLQEAKALLE--YNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI 77
           L  A   G+L  A+ LL+   NP    Y       SP+  +      E + LL++ G   
Sbjct: 6   LCDAILFGELDIARRLLDIGINPNFEIYDGI----SPIKLAMKFRDSEAIKLLMKHGAIP 61

Query: 78  NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
           +++    ++ L  A + G  + V  L+          Y +G T LHLA +      ++LL
Sbjct: 62  DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLL 121

Query: 138 L---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLG 194
           +   AD  P +PN        ++K   +        HL V++     G ++ ++LL+D  
Sbjct: 122 IARGAD--PDIPN--------TDKFSPL--------HLAVMM-----GDIKGIELLIDHK 158

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLM 245
           A +         G T L  A   G+   C++L+  GA++     NG    +
Sbjct: 159 ACLD---IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAAL 206

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
           LL    +D+N  +  G T L  A ++G  E+V  L+    +++  D  +G TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS-DGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 40/206 (19%), Positives = 87/206 (42%), Gaps = 25/206 (12%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +    + ++V  L+  G ++N  ++R  T L   C+  +   +  +I    +I++ 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMI---RSINKC 96

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
                  A+  A  N +    +++L +              K+ +T  ++  D++     
Sbjct: 97  SVFYTLVAIKDAFNNRNVEIFKIILTNRY------------KNIQTIDLVYIDKKSKDDI 144

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
           +          E  +LLL  GA ++  +     G+T+LHYA    + +  ++L++ GA++
Sbjct: 145 I--------EAEITKLLLSYGADIN--MKDRHKGNTALHYATENKDQRLTELLLSYGANV 194

Query: 234 TAENANGWTPLMVARSWHRTGLEDIL 259
              +    +PL  A   +   +  IL
Sbjct: 195 NIPDKTNNSPLHHAVKHYNKPIVHIL 220

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 33  KALLEYNPRLVRYSTFGVRNSPLHYSAAQ-GHHEIVSLLIESGVDINLRNY-RGQTALMQ 90
             LLE           G  N+PLH S      ++I+ LL+E GVD+N ++Y  G TAL  
Sbjct: 218 HILLENGASTDARDKCG--NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 91  ACQHGHWEVVLTLIL-YKANIHRADY 115
           +      E  L L+L Y A+I+  + 
Sbjct: 276 SI---KSERKLKLLLEYGADINSLNS 298

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINL 79
           +PLH +A  G+ E+V LL++ G DIN 
Sbjct: 3  RTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           G T L  A ++GH EVV  L+   A+++  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 51 RNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           N+PLH +A  G+ E+V LL+E G DIN
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 44/241 (18%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A R GD +  +  +++   +   +T  + + PL  +   G H+I+ LLI++GVD ++
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINT-KIPH-PLLTAIKIGAHDIIKLLIDNGVDTSI 96

Query: 80  RNYRGQTALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
                   L   C     +++ T++      NI  A+     T LH A   G    I++L
Sbjct: 97  --------LPIPCIEK--DMIKTILDCGIDVNIKDAEL---KTFLHYAIKKGDLESIKML 143

Query: 138 LADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGAS 196
             +Y   V               +I + +  Y  H+        +   + ++LLL+ GA 
Sbjct: 144 F-EYGADV---------------NIEDDNGCYPIHIA-----IKHNFFDIIKLLLEKGA- 181

Query: 197 VSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGL 255
              Y +V    G + LH AA  G+  C ++LI  G  +  +  NG+TPL  A   +R+ +
Sbjct: 182 ---YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI 238

Query: 256 E 256
           E
Sbjct: 239 E 239

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 171 HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
               L    ++G +E V+ LL+ G  ++        G+T+LH AA  GN +  ++L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR---TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 302 DPCVVCLERKCTVAAKGCDH-EFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF 360
           D CV+CLER   V    C H   C +CA  L S                CP+CR  I S 
Sbjct: 3   DLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKK-------------CPICRQPIESV 49

Length = 49

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
           G+T LH AA  G+ +  ++L+  GA + A +
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI- 110
           N+ LHY+       +  LL+  G ++N+ +    + L  A +H +  +V  L+   A+  
Sbjct: 169 NTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD 228

Query: 111 HRADYLNGGTALHLAALNGHSRCI 134
            R     G T LH++       C 
Sbjct: 229 ARDKC--GNTPLHISV----GYCK 246

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 30/190 (15%)

Query: 66  IVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
           I  +L+E G D+N ++    T +  A + G+ ++V  L+ Y A+++    L+  + L  A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA-LDDLSVLECA 218

Query: 126 ALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVE 185
             + +   I+ ++ +              +SN   + L           LL    N  +E
Sbjct: 219 VDSKNIDTIKAIIDN--------------RSNINKNDLS----------LLKAIRNEDLE 254

Query: 186 SVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN-AQCCQILIAMGASLTAENANGWTPL 244
           +  LL D G SV+   S+    +T LH+A+   + ++    L+  GA + A+N  G TPL
Sbjct: 255 TSLLLYDAGFSVN---SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Query: 245 -MVARSWHRT 253
            ++A++ + T
Sbjct: 312 YLMAKNGYDT 321

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 17/62 (27%), Positives = 37/62 (59%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +P+HY+A +G+ ++V+LL+  G D+N+      + L  A    + + +  +I  ++NI++
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK 239

Query: 113 AD 114
            D
Sbjct: 240 ND 241

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           G T+LH AA  G  +  + L+  G  +   + +G T L +A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 117 NGGTALHLAALNGHSRCIRLLL 138
           +G T LHLAA NGH   ++LLL
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 103 LILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKT 159
           L+ +      A   NG T LHLAA  G    ++ LL       P     LR     T
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK------PGVDLNLRDSDGLT 51

Length = 56

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 13/53 (24%)

Query: 304 CVVCLER-KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRH 355
           C +CL+  +  V    C H FC +C L      S             CP+CR 
Sbjct: 5   CPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSK------------CPICRT 45

Length = 45

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 33/151 (21%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A     +IV +L+ SG+D +  + +G TAL  A   G+ + V   +  K N    
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV--KKNWRLM 121

Query: 114 DYLNGG--TALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
            Y   G  T+ + A +      +   L++ IPS                         F 
Sbjct: 122 FYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST------------------------FD 156

Query: 172 LEVLL---HLTL-NGHVESVQLLLDLGASVS 198
           L +LL   H+T+ NGHV+ + LLLD   S +
Sbjct: 157 LAILLSCIHITIKNGHVDMMILLLDYMTSTN 187

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.95
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.88
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.86
PF13606	30	Ank_3: Ankyrin repeat	98.84
PF13606	30	Ank_3: Ankyrin repeat	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.8
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.75
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.71
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.67
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.5
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.32
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
KOG2384	223	consensus Major histocompatibility complex protein	98.24
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
KOG0511	516	consensus Ankyrin repeat protein [General function	98.19
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.16
KOG2384	223	consensus Major histocompatibility complex protein	98.11
KOG0511	516	consensus Ankyrin repeat protein [General function	98.07
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.9
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.87
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.8
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.8
PHA02929	238	N1R/p28-like protein; Provisional	97.73
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.69
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.56
KOG2505	591	consensus Ankyrin repeat protein [General function	97.52
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	97.51
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.51
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.49
PF14634	44	zf-RING_5: zinc-RING finger domain	97.37
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.35
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.34
PHA02926	242	zinc finger-like protein; Provisional	97.34
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.33
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.29
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.18
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.99
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.94
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	96.89
KOG2505	591	consensus Ankyrin repeat protein [General function	96.87
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.84
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	96.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.67
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.46
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	96.28
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	96.23
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.73
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	95.7
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.66
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	95.65
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.43
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.38
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	95.17
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.16
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.06
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.26
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	94.07
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	93.74
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	92.96
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	92.48
KOG4739	233	consensus Uncharacterized protein involved in syna	92.44
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	92.44
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	92.29
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.26
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.05
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.07
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.81
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	90.42
KOG3799	169	consensus Rab3 effector RIM1 and related proteins,	89.91
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	88.11
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	87.93
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	87.88
COG5219	1525	Uncharacterized conserved protein, contains RING Z	87.6
COG5175	480	MOT2 Transcriptional repressor [Transcription]	87.42
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	87.31
KOG1001	674	consensus Helicase-like transcription factor HLTF/	86.99
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	85.77
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	85.33
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	83.54
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	83.54
COG5152	259	Uncharacterized conserved protein, contains RING a	82.52
KOG3002	299	consensus Zn finger protein [General function pred	82.44
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	81.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	80.88
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	80.44
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	80.18

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=286.43  Aligned_cols=228  Identities=20%  Similarity=0.195  Sum_probs=195.0

Q ss_pred             cccccccCcccCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q 014696            2 KFLSIVGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN   81 (420)
Q Consensus         2 ~~l~~~g~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d   81 (420)
                      +||..-|.......+.++||+|+..|+.++++.|++.+++.+..    .|+||||+|+..|+.+++++|++.|++++.+|
T Consensus        16 ~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d   91 (284)
T PHA02791         16 SFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGMDDSQFD   91 (284)
T ss_pred             HHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence            45555566666667889999999999999999999999876653    24799999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCC
Q 014696           82 YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNG-GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG  160 (420)
Q Consensus        82 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  160 (420)
                      ..|+||||+|+..|+.+++++|+++|++++..+. .| .||||+|+..|+.+++++|++++...                
T Consensus        92 ~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~~~----------------  154 (284)
T PHA02791         92 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPST----------------  154 (284)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCCcc----------------
Confidence            9999999999999999999999999999998876 55 59999999999999999999753110                


Q ss_pred             CchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH-HHHHHHcCCHHHHHHHHHhCCCccccccC
Q 014696          161 SILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMGASLTAENAN  239 (420)
Q Consensus       161 ~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp-Lh~Aa~~g~~~iv~~Ll~~gad~~~~d~~  239 (420)
                          .+. ..+.++++.|+..|+.+++++|+++|++++   .++..|.|| ||+|+..|+.++|++|+++|+++|.+|..
T Consensus       155 ----~d~-~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n---~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~  226 (284)
T PHA02791        155 ----FDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN---TNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE  226 (284)
T ss_pred             ----ccc-ccCccHHHHHHHcCCHHHHHHHHHCCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc
Confidence                000 113455556699999999999999999999   667788877 99999999999999999999999999986


Q ss_pred             CCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          240 GWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       240 G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      | |+|      ++.|++++|+++...
T Consensus       227 ~-~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        227 N-VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             C-ccC------CCHHHHHHHHHhhhh
Confidence            5 555      889999999987654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=266.61  Aligned_cols=209  Identities=18%  Similarity=0.109  Sum_probs=181.2

Q ss_pred             cCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHH
Q 014696           26 DGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLIL  105 (420)
Q Consensus        26 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  105 (420)
                      .++.+++++|+++++.    ..+..|+||||+|+..|+.+++++|+++|++++..+  |+||||+|+..|+.++|++|++
T Consensus         9 ~~~~~~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF----KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH
Confidence            4688999999998864    244567999999999999999999999999998765  7899999999999999999999


Q ss_pred             cCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chh-hHHHHHHhcCC
Q 014696          106 YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHL-EVLLHLTLNGH  183 (420)
Q Consensus       106 ~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~aa~~g~  183 (420)
                      +|++++..+. .|+||||+|+..|+.+++++|++++...                     +..+ .+. +++++|+..|+
T Consensus        83 ~Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gadi---------------------n~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         83 SGMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRL---------------------MFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc---------------------CccCCCCCcHHHHHHHHcCC
Confidence            9999999886 9999999999999999999999875322                     1111 222 45555799999


Q ss_pred             HHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCH-HHHHHHcCchhHHHHhhhC
Q 014696          184 VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTP-LMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       184 ~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~Tp-L~~A~~~g~~~i~~lL~~~  262 (420)
                      .+++++|++++.+...    ...|.||||+|++.|+.+++++|+++|++++.+|..|.|| ||+|+..|+.+++++|+++
T Consensus       141 ~eivk~LL~~~~~~~d----~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        141 VSIVSYFLSEIPSTFD----LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             HHHHHHHHhcCCcccc----cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            9999999998765421    1248999999999999999999999999999999999987 9999999999999999999


Q ss_pred             CCCc
Q 014696          263 PEGR  266 (420)
Q Consensus       263 ~~~~  266 (420)
                      ++..
T Consensus       217 Ga~i  220 (284)
T PHA02791        217 DINI  220 (284)
T ss_pred             CCCC
Confidence            8874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-36  Score=243.60  Aligned_cols=204  Identities=25%  Similarity=0.317  Sum_probs=158.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI-ESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll-~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ..+.+........|+.+++..+......++.+|+||||+|+..||.+|+++|+ +.+..+|.+|..||||||.|+..|+.
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~   85 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND   85 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH
Confidence            45677777788899999998885444445556799999999999999999999 56889999999999999999999999


Q ss_pred             HHHHHHHHc-CCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH-
Q 014696           98 EVVLTLILY-KANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL-  175 (420)
Q Consensus        98 ~iv~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (420)
                      ++|+.|+.+ |+++|...+ .|+|+||||+..|..+|+++|++++..                     .+..+..+.++ 
T Consensus        86 evVk~Ll~r~~advna~tn-~G~T~LHyAagK~r~eIaqlLle~ga~---------------------i~~kD~~~qtpl  143 (226)
T KOG4412|consen   86 EVVKELLNRSGADVNATTN-GGQTCLHYAAGKGRLEIAQLLLEKGAL---------------------IRIKDKQGQTPL  143 (226)
T ss_pred             HHHHHHhcCCCCCcceecC-CCcceehhhhcCChhhHHHHHHhcCCC---------------------CcccccccCchh
Confidence            999999998 999999987 999999999999999999888876422                     12222233333 


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      +.||.-|+++++++|+..|+.+|   .+|..|+||||.|...|+.++..+|+++|||++..|+.| ||+-.|.
T Consensus       144 HRAAavGklkvie~Li~~~a~~n---~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  144 HRAAAVGKLKVIEYLISQGAPLN---TQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHHhccchhhHHHHHhcCCCCC---cccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            33466677777777777776666   566667777777766667777777777777777667666 6665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=285.01  Aligned_cols=238  Identities=20%  Similarity=0.199  Sum_probs=204.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      -.+|+.|+..|+.++++.|++.|++++....  .|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~--~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIY--DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            3689999999999999999999988876543  46899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      .+++++|++.|++.+......|.||||+|+..|+.+++++|++.|.....                    ....+.++++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~--------------------~~~~g~tpLh  140 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI--------------------PNTDKFSPLH  140 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC--------------------CCCCCCCHHH
Confidence            99999999999987655445799999999999999999999987643321                    1112344555


Q ss_pred             HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCC-CHHHHHHHcCchhH
Q 014696          177 HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW-TPLMVARSWHRTGL  255 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~-TpL~~A~~~g~~~i  255 (420)
                      .|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.++
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i  217 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKACLD---IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI  217 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence            5699999999999999999999   7788999999999999999999999999999999998875 89999999999999


Q ss_pred             HHHhhhCCCCccccCC-CCCCCchH
Q 014696          256 EDILSTQPEGRLEVLP-SPYLALPL  279 (420)
Q Consensus       256 ~~lL~~~~~~~~~~~~-~~~~~~pl  279 (420)
                      +++|+++++....... +..+.+|+
T Consensus       218 v~~Ll~~gad~n~~~~~~~~~~t~l  242 (413)
T PHA02875        218 VRLFIKRGADCNIMFMIEGEECTIL  242 (413)
T ss_pred             HHHHHHCCcCcchHhhcCCCchHHH
Confidence            9999999887433211 34444444

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-34  Score=283.11  Aligned_cols=238  Identities=25%  Similarity=0.310  Sum_probs=192.6

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCC-------------------
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV-------------------   75 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~-------------------   75 (420)
                      .+.++|+.|++.|+.++|++|++.|++++....  .|.||||+|+..|+.+++++|+++|+                   
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~--~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINT--KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            456899999999999999999999988776544  45799999999999999988887654                   


Q ss_pred             ----CCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHH
Q 014696           76 ----DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNR  151 (420)
Q Consensus        76 ----~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  151 (420)
                          +++.++..|+||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++....      
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n------  184 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAYAN------  184 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCCC------
Confidence                4667788899999999999999999999999999998886 89999999999999999999998753221      


Q ss_pred             HhhhccCCCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          152 LRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                     ..+ .+.++++.|+..|+.+++++|+++|++++   ..+..|.||||+|+..+. +++++|+ .|
T Consensus       185 ---------------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~---~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~  244 (434)
T PHA02874        185 ---------------VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM---NKCKNGFTPLHNAIIHNR-SAIELLI-NN  244 (434)
T ss_pred             ---------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc---CCCCCCCCHHHHHHHCCh-HHHHHHH-cC
Confidence                           112 23344555589999999999999999988   667789999999998765 5666666 58


Q ss_pred             CCccccccCCCCHHHHHHHcC-chhHHHHhhhCCCCccccCCCCCCCchHHHHH
Q 014696          231 ASLTAENANGWTPLMVARSWH-RTGLEDILSTQPEGRLEVLPSPYLALPLMSIV  283 (420)
Q Consensus       231 ad~~~~d~~G~TpL~~A~~~g-~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l  283 (420)
                      ++++.+|..|+||||+|+..+ +.+++++|+++++..  ...+..+.+|+..+.
T Consensus       245 ~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~--n~~d~~g~TpL~~A~  296 (434)
T PHA02874        245 ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI--SIKDNKGENPIDTAF  296 (434)
T ss_pred             CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC--CCCCCCCCCHHHHHH
Confidence            899999999999999999875 789999999887762  334667778876543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=290.98  Aligned_cols=221  Identities=24%  Similarity=0.279  Sum_probs=151.5

Q ss_pred             HHHHH-----HHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCCccCCCCCHHHH
Q 014696           18 ERLVS-----AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSA--AQGHHEIVSLLIESGVDINLRNYRGQTALMQ   90 (420)
Q Consensus        18 ~~L~~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~   90 (420)
                      ++||.     |+..|+.++++.|++.+++++..+  ..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+
T Consensus        70 t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d--~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~  147 (480)
T PHA03100         70 TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPD--NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL  147 (480)
T ss_pred             CHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCC--CCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            45555     555555555555555555543222  23355555555  5555555555555555555555555555555


Q ss_pred             HHHcC--cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc
Q 014696           91 ACQHG--HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER  168 (420)
Q Consensus        91 A~~~g--~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                      |+..|  +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++....                     ..
T Consensus       148 A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~---------------------~~  205 (480)
T PHA03100        148 YLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGADIN---------------------AG  205 (480)
T ss_pred             HHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHcCCCcc---------------------CC
Confidence            55555  55555555555555555554 55555555555555555555555433211                     11


Q ss_pred             cch-------hhHHHHHHhcCC--HHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 014696          169 YFH-------LEVLLHLTLNGH--VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN  239 (420)
Q Consensus       169 ~~~-------~~~~l~aa~~g~--~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~  239 (420)
                      ...       .+++..|+..|+  .+++++|+++|++++   .++..|.||||+|+..|+.+++++|+++|+|++.+|..
T Consensus       206 ~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din---~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~  282 (480)
T PHA03100        206 DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN---IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY  282 (480)
T ss_pred             CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            111       344555689999  999999999999999   77889999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          240 GWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       240 G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      |.||+++|+..++.+++++|+++++.
T Consensus       283 g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        283 GDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            99999999999999999999999875

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=289.10  Aligned_cols=242  Identities=23%  Similarity=0.324  Sum_probs=213.2

Q ss_pred             cCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHH-----HHHcCcHHHHHHHHHcCCCCCCccCCCCC
Q 014696           12 GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHY-----SAAQGHHEIVSLLIESGVDINLRNYRGQT   86 (420)
Q Consensus        12 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~-----Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~T   86 (420)
                      ....+.++||.|+..|+.++|++|++.|++++....  .|.||||+     |+..|+.+++++|+++|++++..|..|.|
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~--~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t  108 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTK--NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT  108 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccc--cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc
Confidence            344667899999999999999999999988876544  45899999     99999999999999999999999999999


Q ss_pred             HHHHHH--HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCc
Q 014696           87 ALMQAC--QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG--HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSI  162 (420)
Q Consensus        87 pL~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  162 (420)
                      |||+|+  ..|+.+++++|+++|++++..+. .|.||||+|+..|  +.+++++|++++....                 
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-----------------  170 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVDIN-----------------  170 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-----------------
Confidence            999999  99999999999999999999886 9999999999999  9999999998754321                 


Q ss_pred             hhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCC------ccHHHHHHHcCC--HHHHHHHHHhCCCc
Q 014696          163 LEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG------STSLHYAACGGN--AQCCQILIAMGASL  233 (420)
Q Consensus       163 ~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g------~TpLh~Aa~~g~--~~iv~~Ll~~gad~  233 (420)
                          ..+ .+.++++.|+..|+.+++++|+++|++++   ..+..|      .||||+|+..|+  .+++++|+++|+++
T Consensus       171 ----~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~---~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di  243 (480)
T PHA03100        171 ----AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN---AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI  243 (480)
T ss_pred             ----cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc---CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC
Confidence                111 33445556699999999999999999999   566677      899999999999  99999999999999


Q ss_pred             cccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          234 TAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       234 ~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      +.+|..|+||||+|+..|+.+++++|++.++.  ....+..+.+|+..+
T Consensus       244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad--~n~~d~~g~tpl~~A  290 (480)
T PHA03100        244 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN--PNLVNKYGDTPLHIA  290 (480)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHH
Confidence            99999999999999999999999999999984  233567788887543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.7e-34  Score=286.22  Aligned_cols=238  Identities=22%  Similarity=0.196  Sum_probs=169.9

Q ss_pred             CCCHHHHHHHHcC---CHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcC-cHHHHHHHHHcCCCCCCccCCCCCHHHH
Q 014696           15 ASGERLVSAARDG---DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQG-HHEIVSLLIESGVDINLRNYRGQTALMQ   90 (420)
Q Consensus        15 ~~~~~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g-~~~iv~~Ll~~g~~v~~~d~~g~TpL~~   90 (420)
                      .+.++||.|+..|   +.++++.|++.|++++..+.  .|.||||+|+..| +.+++++|+++|++++.+|..|+||||+
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~--~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER--CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4567888888887   88888888888887776554  4578888888888 5888888888888888888888888888


Q ss_pred             HH--HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcc
Q 014696           91 AC--QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG--HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD  166 (420)
Q Consensus        91 A~--~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      |+  ..++.+++++|+++|++++..+. .|.||||+|+..+  +.+++++|++++.....                    
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~--------------------  182 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYA--------------------  182 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc--------------------
Confidence            88  45677888888888888887775 7888888877765  57788888876543211                    


Q ss_pred             cccchhhHHHH-HH--hcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCH--HHHHHHHHhCCCccccccCCC
Q 014696          167 ERYFHLEVLLH-LT--LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA--QCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       167 ~~~~~~~~~l~-aa--~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~--~iv~~Ll~~gad~~~~d~~G~  241 (420)
                       .+..+.+++| ++  ..++.+++++|+++|++++   .+|..|.||||+|+..|+.  .+++.|+++|+++|.+|..|+
T Consensus       183 -~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~---~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~  258 (471)
T PHA03095        183 -VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA---ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ  258 (471)
T ss_pred             -cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCC
Confidence             1222333333 33  2466777777777777777   5677777777777777754  567777777777777777777


Q ss_pred             CHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          242 TPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       242 TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      ||||+|+..|+.+++++|++.++..  ...+..+.+|++.
T Consensus       259 TpLh~A~~~~~~~~v~~LL~~gad~--n~~~~~g~tpl~~  296 (471)
T PHA03095        259 TPLHYAAVFNNPRACRRLIALGADI--NAVSSDGNTPLSL  296 (471)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHH
Confidence            7777777777777777777776652  2235556666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-33  Score=278.92  Aligned_cols=237  Identities=22%  Similarity=0.252  Sum_probs=197.7

Q ss_pred             ccccccCccc--CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcc---------------------cccCCCCCCcHHHHHH
Q 014696            3 FLSIVGNSFG--CSASGERLVSAARDGDLQEAKALLEYNPRLV---------------------RYSTFGVRNSPLHYSA   59 (420)
Q Consensus         3 ~l~~~g~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~---------------------~~~~~~~g~t~Lh~Aa   59 (420)
                      +|...|....  ...+.++|+.|+..|+.+++++|++++.+..                     ....+..|.||||+|+
T Consensus        53 ~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~  132 (434)
T PHA02874         53 LFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI  132 (434)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHH
Confidence            4444554442  2345689999999999999999999876532                     1223456799999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHH
Q 014696           60 AQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA  139 (420)
Q Consensus        60 ~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  139 (420)
                      ..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++
T Consensus       133 ~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~g~~~iv~~Ll~  211 (434)
T PHA02874        133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLID  211 (434)
T ss_pred             HCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998886 99999999999999999999998


Q ss_pred             hcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcC-
Q 014696          140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGG-  218 (420)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g-  218 (420)
                      .+...                     ......+.+++|.|..++.+.+++|+ .|++++   .++..|.||||+|+..+ 
T Consensus       212 ~g~~i---------------------~~~~~~g~TpL~~A~~~~~~~i~~Ll-~~~~in---~~d~~G~TpLh~A~~~~~  266 (434)
T PHA02874        212 HGNHI---------------------MNKCKNGFTPLHNAIIHNRSAIELLI-NNASIN---DQDIDGSTPLHHAINPPC  266 (434)
T ss_pred             CCCCC---------------------cCCCCCCCCHHHHHHHCChHHHHHHH-cCCCCC---CcCCCCCCHHHHHHhcCC
Confidence            75322                     11222345566654444556777777 688888   77889999999999876 


Q ss_pred             CHHHHHHHHHhCCCccccccCCCCHHHHHHHcC-chhHHHHhhhCCCC
Q 014696          219 NAQCCQILIAMGASLTAENANGWTPLMVARSWH-RTGLEDILSTQPEG  265 (420)
Q Consensus       219 ~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g-~~~i~~lL~~~~~~  265 (420)
                      +.+++++|+++|+|++.+|..|.|||++|++++ +.++++.|+.+...
T Consensus       267 ~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~  314 (434)
T PHA02874        267 DIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL  314 (434)
T ss_pred             cHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence            899999999999999999999999999999987 67788988887654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.1e-33  Score=273.57  Aligned_cols=221  Identities=19%  Similarity=0.182  Sum_probs=186.3

Q ss_pred             CHHHHHHH--HcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           17 GERLVSAA--RDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        17 ~~~L~~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.||.++  ..++.++|+.|++++++++..+.  .|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~--~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDD--DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCC--CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            46777765  45578999999999999877554  569999999999999999999999999999999999999999987


Q ss_pred             C--cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchh
Q 014696           95 G--HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL  172 (420)
Q Consensus        95 g--~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
                      +  ..+++++|+++|++++...+..|.|||| |+..|+.+++++|++.+...                     +..+..+
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~---------------------~~~d~~G  173 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA---------------------RIVDKFG  173 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc---------------------cccCCCC
Confidence            6  4899999999999999754448999997 66779999999999864322                     2223334


Q ss_pred             hHHHH-HH--hcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcC--CHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          173 EVLLH-LT--LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGG--NAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       173 ~~~l~-aa--~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g--~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      .+++| ++  .+++.+++++|+++|++++   .+|..|.||||+|+..|  +.+++++|++ |+++|.+|..|+||||+|
T Consensus       174 ~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin---~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A  249 (446)
T PHA02946        174 KNHIHRHLMSDNPKASTISWMMKLGISPS---KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            44554 43  3556899999999999999   77899999999999986  8899999995 999999999999999999


Q ss_pred             HHcCc-hhHHHHhhhCCCC
Q 014696          248 RSWHR-TGLEDILSTQPEG  265 (420)
Q Consensus       248 ~~~g~-~~i~~lL~~~~~~  265 (420)
                      ++.++ .+++++|+++++.
T Consensus       250 ~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        250 IKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHhCChHHHHHHHHhCCCC
Confidence            99988 5899999888753

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.2e-33  Score=278.97  Aligned_cols=255  Identities=15%  Similarity=0.167  Sum_probs=186.4

Q ss_pred             cccccccCcccCC-CCCHHHHHHHHc--CCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcC------cHHHHHHHHH
Q 014696            2 KFLSIVGNSFGCS-ASGERLVSAARD--GDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQG------HHEIVSLLIE   72 (420)
Q Consensus         2 ~~l~~~g~~~~~~-~~~~~L~~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g------~~~iv~~Ll~   72 (420)
                      ++|...|.+.-.. .+.++|+.++..  ++.++|+.|+++|++++...   .+.||||.|+.++      +.+++++|++
T Consensus        20 ~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~   96 (494)
T PHA02989         20 EFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLK   96 (494)
T ss_pred             HHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHH
Confidence            4555566665432 355778765554  37899999999999988643   4589999998754      5789999999


Q ss_pred             cCCCCCCccCCCCCHHHHHHHc---CcHHHHHHHHHcCCCC-CccccCCCChHHHHHHHc--CCHHHHHHHHHhcCCCCh
Q 014696           73 SGVDINLRNYRGQTALMQACQH---GHWEVVLTLILYKANI-HRADYLNGGTALHLAALN--GHSRCIRLLLADYIPSVP  146 (420)
Q Consensus        73 ~g~~v~~~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~  146 (420)
                      +|+|+|.+|..|.||||.|+..   |+.+++++|+++|+++ +..+. .|+||||+|+..  ++.+++++|+++|.....
T Consensus        97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989         97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            9999999999999999988765   6799999999999999 66665 999999998764  689999999998875432


Q ss_pred             h----hHHHHhhh--cc----C-------CCCchhcccccchhhHHHHH-Hh------cCCHHHHHHHHHcCCCcccccc
Q 014696          147 N----AWNRLRKK--SN----K-------TGSILEFDERYFHLEVLLHL-TL------NGHVESVQLLLDLGASVSEYLS  202 (420)
Q Consensus       147 ~----~~~~~~~~--~~----~-------~~~~~~~~~~~~~~~~~l~a-a~------~g~~~~v~~Ll~~ga~~~~~~~  202 (420)
                      .    ....+...  ..    .       .....+.+..+..+.++++. +.      .+..+++++|+. |++++   .
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn---~  251 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKIN---K  251 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCC---C
Confidence            1    00000000  00    0       00011112222233344433 11      123455554443 46666   5


Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       203 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      +|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|++...
T Consensus       252 ~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        252 KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            67789999999999999999999999999999999999999999999999999999988653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.4e-32  Score=280.02  Aligned_cols=253  Identities=22%  Similarity=0.200  Sum_probs=193.3

Q ss_pred             ccccccc-Cccc---CCCCCHHHHHHHH--cCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCc--HHHHHHHHHc
Q 014696            2 KFLSIVG-NSFG---CSASGERLVSAAR--DGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGH--HEIVSLLIES   73 (420)
Q Consensus         2 ~~l~~~g-~~~~---~~~~~~~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~iv~~Ll~~   73 (420)
                      ++|...| .+.-   ...+.++||.|+.  .++.+++++|+++|++++..+.  .|.||||+|+..|+  .++|++|+++
T Consensus       159 k~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~--~G~TPLH~Aa~~g~~~~eIVklLLe~  236 (764)
T PHA02716        159 KYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN--HLITPLHTYLITGNVCASVIKKIIEL  236 (764)
T ss_pred             HHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            4555555 3321   2346689998865  4689999999999998887554  46899999999995  4999999999


Q ss_pred             CCCCCCccCCCCCHHHHH-------------------------------------HHcCcHHHHHHHHHcCCCCCccccC
Q 014696           74 GVDINLRNYRGQTALMQA-------------------------------------CQHGHWEVVLTLILYKANIHRADYL  116 (420)
Q Consensus        74 g~~v~~~d~~g~TpL~~A-------------------------------------~~~g~~~iv~~Ll~~ga~~~~~~~~  116 (420)
                      |+++|.+|..|+||||+|                                     ++.|+.+++++|+++|++++.++. 
T Consensus       237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~-  315 (764)
T PHA02716        237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS-  315 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC-
Confidence            999999999999999975                                     445788999999999999999986 


Q ss_pred             CCChHHHHHHH--cCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHH-Hh-------------
Q 014696          117 NGGTALHLAAL--NGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TL-------------  180 (420)
Q Consensus       117 ~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a-a~-------------  180 (420)
                      .|+||||+|+.  .++.+++++|+++|...                     +..+..+.+++|. +.             
T Consensus       316 ~G~TPLH~Aaa~~~~~~eIVklLLe~GADI---------------------N~kD~~G~TPLH~A~~~lav~~~ld~~~~  374 (764)
T PHA02716        316 AGRTCLHQYILRHNISTDIIKLLHEYGNDL---------------------NEPDNIGNTVLHTYLSMLSVVNILDPETD  374 (764)
T ss_pred             CCCCHHHHHHHHhCCCchHHHHHHHcCCCC---------------------ccCCCCCCCHHHHHHHhhhhhcccccccc
Confidence            99999999864  46889999999875432                     2233344455553 22             


Q ss_pred             -cCCHHHHHHHHHcCCCcccccccCCCCccHHHH----HHHcCCHHHHHHHHHhCC------------------------
Q 014696          181 -NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHY----AACGGNAQCCQILIAMGA------------------------  231 (420)
Q Consensus       181 -~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~----Aa~~g~~~iv~~Ll~~ga------------------------  231 (420)
                       .++.+++++|+++|++++   .++..|.||||.    |...++.+++++|++.|+                        
T Consensus       375 ~~~~~eVVklLL~~GADIn---~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lh  451 (764)
T PHA02716        375 NDIRLDVIQCLISLGADIT---AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIH  451 (764)
T ss_pred             ccChHHHHHHHHHCCCCCC---CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHH
Confidence             368899999999999998   778889999984    233567888888877543                        


Q ss_pred             -------------------------------------CccccccCCCCHHHHHHHcCchhH-----HHHhhhCCCCcccc
Q 014696          232 -------------------------------------SLTAENANGWTPLMVARSWHRTGL-----EDILSTQPEGRLEV  269 (420)
Q Consensus       232 -------------------------------------d~~~~d~~G~TpL~~A~~~g~~~i-----~~lL~~~~~~~~~~  269 (420)
                                                           ++|..|..|+||||+|+..|+.++     +++|++.++.. . 
T Consensus       452 h~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI-N-  529 (764)
T PHA02716        452 HIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI-N-  529 (764)
T ss_pred             HHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC-c-
Confidence                                                 224456789999999999887744     49999888762 2 


Q ss_pred             CCCCCCCchHHHHH
Q 014696          270 LPSPYLALPLMSIV  283 (420)
Q Consensus       270 ~~~~~~~~pl~~~l  283 (420)
                      ..+..+.+|++.++
T Consensus       530 ~~d~~G~TPLh~A~  543 (764)
T PHA02716        530 IPTKNGVTPLMLTM  543 (764)
T ss_pred             ccCCCCCCHHHHHH
Confidence            35778888876443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=274.04  Aligned_cols=237  Identities=23%  Similarity=0.207  Sum_probs=189.1

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      +-+|||.|+..|+.++|+.|++.|++++..+.  .|.||||+|+..|+.+++++|++.+.+.+.  ..+.+||+.|+..+
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~  112 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDH--RDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNR  112 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcC
Confidence            34789999999999999999999998876554  568999999999999999999988765554  45778888888776


Q ss_pred             cHH---------------------------------HHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 014696           96 HWE---------------------------------VVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI  142 (420)
Q Consensus        96 ~~~---------------------------------iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  142 (420)
                      +.+                                 ++++|+++|++++..+...|.||||+|+..|+.+++++|++.+.
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence            643                                 66677777888888886339999999999999999999997653


Q ss_pred             CCChhhHHHHhhhccCCCCchhcccccc-hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHc-CCH
Q 014696          143 PSVPNAWNRLRKKSNKTGSILEFDERYF-HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG-GNA  220 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~-g~~  220 (420)
                      ..                     +..+. +.++++.|+..|+.+++++|+++|++++   .++..|.||||+|+.. ++.
T Consensus       193 d~---------------------n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in---~~d~~g~TpLh~A~~~~~~~  248 (477)
T PHA02878        193 NV---------------------NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD---ARDKCGNTPLHISVGYCKDY  248 (477)
T ss_pred             CC---------------------CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHhcCCH
Confidence            22                     12222 3344455588899999999999999998   6788899999999975 688


Q ss_pred             HHHHHHHHhCCCcccccc-CCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHH
Q 014696          221 QCCQILIAMGASLTAENA-NGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVK  284 (420)
Q Consensus       221 ~iv~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~  284 (420)
                      +++++|+++|++++.++. .|+||||+|  .++.+++++|++.++..  ...+..+.+|++.++.
T Consensus       249 ~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi--n~~d~~g~TpL~~A~~  309 (477)
T PHA02878        249 DILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI--NSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHH
Confidence            999999999999998876 799999999  46778899999888762  2346778888876654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=284.17  Aligned_cols=273  Identities=22%  Similarity=0.233  Sum_probs=206.3

Q ss_pred             ccccccCccc--CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHH---------
Q 014696            3 FLSIVGNSFG--CSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI---------   71 (420)
Q Consensus         3 ~l~~~g~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll---------   71 (420)
                      +|...|.+..  ...+.+|||.|++.|+.++|++|+++|++++.....  |.||||+|+..|+.+++++|+         
T Consensus       163 ~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~--g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~  240 (682)
T PHA02876        163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD--DLSVLECAVDSKNIDTIKAIIDNRSNINKN  240 (682)
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC--CCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            4444455442  234668999999999999999999999888765543  478999888888877776554         


Q ss_pred             --------------------HcCCCCCCccCCCCCHHHHHHHcCcH-HHHHHHHHcCCCCCccccCCCChHHHHHHHcC-
Q 014696           72 --------------------ESGVDINLRNYRGQTALMQACQHGHW-EVVLTLILYKANIHRADYLNGGTALHLAALNG-  129 (420)
Q Consensus        72 --------------------~~g~~v~~~d~~g~TpL~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g-  129 (420)
                                          +.|++++..|..|.||||+|+..|+. +++++|++.|++++..+. .|.||||+|+..| 
T Consensus       241 ~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~-~g~TpLh~Aa~~g~  319 (682)
T PHA02876        241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI-KGETPLYLMAKNGY  319 (682)
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCC
Confidence                                45567777888899999999999986 689999999999998886 8999999999999 


Q ss_pred             CHHHHHHHHHhcCCCChhh---HHHHhhhc--cC--------CCCchhcccccchhhH-HHHHHhcCCHHHHHHHHHcCC
Q 014696          130 HSRCIRLLLADYIPSVPNA---WNRLRKKS--NK--------TGSILEFDERYFHLEV-LLHLTLNGHVESVQLLLDLGA  195 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~---~~~~~~~~--~~--------~~~~~~~~~~~~~~~~-~l~aa~~g~~~~v~~Ll~~ga  195 (420)
                      +.+++++|+..+.......   ...+....  ..        .....+.+..+..+.+ ++.|+..|+.+++++|+++|+
T Consensus       320 ~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga  399 (682)
T PHA02876        320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA  399 (682)
T ss_pred             CHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            5899999998776543211   11110000  00        0011122333333444 445589999999999999999


Q ss_pred             CcccccccCCCCccHHHHHHHcCC-HHHHHHHHHhCCCccccccCCCCHHHHHHHcC-chhHHHHhhhCCCCccccCCCC
Q 014696          196 SVSEYLSVSGAGSTSLHYAACGGN-AQCCQILIAMGASLTAENANGWTPLMVARSWH-RTGLEDILSTQPEGRLEVLPSP  273 (420)
Q Consensus       196 ~~~~~~~~~~~g~TpLh~Aa~~g~-~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g-~~~i~~lL~~~~~~~~~~~~~~  273 (420)
                      +++   ..+..|.||||+|+..++ ..++++|+++|+++|.+|..|+||||+|+..+ +.+++++|++.++..  ...+.
T Consensus       400 d~~---~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~--n~~d~  474 (682)
T PHA02876        400 DIE---ALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV--NAINI  474 (682)
T ss_pred             Ccc---ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC--CCCCC
Confidence            999   677889999999998766 56799999999999999999999999999876 689999999998762  33577


Q ss_pred             CCCchHHHHH
Q 014696          274 YLALPLMSIV  283 (420)
Q Consensus       274 ~~~~pl~~~l  283 (420)
                      .+.+|+..+.
T Consensus       475 ~g~tpl~~a~  484 (682)
T PHA02876        475 QNQYPLLIAL  484 (682)
T ss_pred             CCCCHHHHHH
Confidence            8888887654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=274.34  Aligned_cols=236  Identities=23%  Similarity=0.238  Sum_probs=201.8

Q ss_pred             ccccccCcc--cCCCCCHHHHHHHHcC-CHHHHHHHHHhCCCcccccCCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCC
Q 014696            3 FLSIVGNSF--GCSASGERLVSAARDG-DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSA--AQGHHEIVSLLIESGVDI   77 (420)
Q Consensus         3 ~l~~~g~~~--~~~~~~~~L~~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~g~~v   77 (420)
                      +|...|.+.  ....+.+|||.|+..| +.++++.|++++++++..+.  .|+||||+|+  ..++.+++++|+++|+++
T Consensus        68 ~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~--~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~  145 (471)
T PHA03095         68 LLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK--VGRTPLHVYLSGFNINPKVIRLLLRKGADV  145 (471)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC--CCCCHHHHHhhCCcCCHHHHHHHHHcCCCC
Confidence            344444443  2236779999999999 59999999999999877554  4589999999  567899999999999999


Q ss_pred             CCccCCCCCHHHHHHHcC--cHHHHHHHHHcCCCCCccccCCCChHHHHHHHc--CCHHHHHHHHHhcCCCChhhHHHHh
Q 014696           78 NLRNYRGQTALMQACQHG--HWEVVLTLILYKANIHRADYLNGGTALHLAALN--GHSRCIRLLLADYIPSVPNAWNRLR  153 (420)
Q Consensus        78 ~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~  153 (420)
                      +..|..|.||||+|+..+  +.+++++|+++|++++..+. .|.||||+|+..  ++.+++++|++.+....        
T Consensus       146 ~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--------  216 (471)
T PHA03095        146 NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD-RFRSLLHHHLQSFKPRARIVRELIRAGCDPA--------  216 (471)
T ss_pred             CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--------
Confidence            999999999999999876  68999999999999999865 999999999875  78899999998754332        


Q ss_pred             hhccCCCCchhcccccchhhHHHH-HHhcCCH--HHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          154 KKSNKTGSILEFDERYFHLEVLLH-LTLNGHV--ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~-aa~~g~~--~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                   ..+..+.+++| |+..|+.  .+++.|++.|++++   .+|..|.||||+|+..|+.+++++|+++|
T Consensus       217 -------------~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din---~~d~~g~TpLh~A~~~~~~~~v~~LL~~g  280 (471)
T PHA03095        217 -------------ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN---ARNRYGQTPLHYAAVFNNPRACRRLIALG  280 (471)
T ss_pred             -------------ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                         22334445555 4777764  68899999999999   77889999999999999999999999999


Q ss_pred             CCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          231 ASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       231 ad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      +|++.+|.+|+||||+|+.+|+.+++++|++.+..
T Consensus       281 ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        281 ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999988765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.1e-32  Score=278.87  Aligned_cols=244  Identities=19%  Similarity=0.124  Sum_probs=197.6

Q ss_pred             HcCCHHHHHHHHHhC-CCcccccCCCCCCcHHHHHHH--cCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc--HHH
Q 014696           25 RDGDLQEAKALLEYN-PRLVRYSTFGVRNSPLHYSAA--QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH--WEV   99 (420)
Q Consensus        25 ~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~--~~i   99 (420)
                      +.++.++|++|++.+ ++++... +..|.||||+|+.  +++.+++++|+++|+++|.+|..|.||||+|+..|+  .++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~-d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVC-KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCccccc-CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            468999999999999 8887652 2456999999865  468999999999999999999999999999999995  599


Q ss_pred             HHHHHHcCCCCCccccCCCChHHHHHH---HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696          100 VLTLILYKANIHRADYLNGGTALHLAA---LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus       100 v~~Ll~~ga~~~~~~~~~g~tpL~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      |++|+++|++++.++. .|+||||+|+   ..++.++++.|++......                   ..........++
T Consensus       230 VklLLe~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-------------------~~~~~~~L~~~i  289 (764)
T PHA02716        230 IKKIIELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNK-------------------VKNIPMILHSYI  289 (764)
T ss_pred             HHHHHHcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccc-------------------cccchhhhHHHH
Confidence            9999999999999986 9999999986   5689999999987521100                   000000111234


Q ss_pred             HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHH--cCCHHHHHHHHHhCCCccccccCCCCHHHHHHH-----
Q 014696          177 HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAAC--GGNAQCCQILIAMGASLTAENANGWTPLMVARS-----  249 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~--~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~-----  249 (420)
                      .|+..|+.+++++|+++|++++   .+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.     
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN---~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~  366 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLH---YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVV  366 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCcee---ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhh
Confidence            4689999999999999999999   778899999999864  468999999999999999999999999999875     


Q ss_pred             ---------cCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCC
Q 014696          250 ---------WHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNS  294 (420)
Q Consensus       250 ---------~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~  294 (420)
                               .++.+++++|+++++.  ....+..+.+|++.++..+...++.++
T Consensus       367 ~~ld~~~~~~~~~eVVklLL~~GAD--In~kn~~G~TPLh~y~~~a~n~~~~dI  418 (764)
T PHA02716        367 NILDPETDNDIRLDVIQCLISLGAD--ITAVNCLGYTPLTSYICTAQNYMYYDI  418 (764)
T ss_pred             ccccccccccChHHHHHHHHHCCCC--CCCcCCCCCChHHHHHHHHHhcChHHH
Confidence                     3688999999999876  233578899999865555555444333

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=268.70  Aligned_cols=252  Identities=17%  Similarity=0.124  Sum_probs=199.1

Q ss_pred             cccccCccc--CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcC--cHHHHHHHHHcCCCCCC
Q 014696            4 LSIVGNSFG--CSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQG--HHEIVSLLIESGVDINL   79 (420)
Q Consensus         4 l~~~g~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~g~~v~~   79 (420)
                      |...|.+.-  ...+.||||.|++.|+.++|++|+++|++++..+.  .|+||||+|+..+  ..+++++|+++|++++.
T Consensus        58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~--~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~  135 (446)
T PHA02946         58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK--QHKTPLYYLSGTDDEVIERINLLVQYGAKINN  135 (446)
T ss_pred             HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC--CCCCHHHHHHHcCCchHHHHHHHHHcCCCccc
Confidence            334444432  23667899999999999999999999999886544  5689999999876  48999999999999995


Q ss_pred             -ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCChhhHHHHhhhc
Q 014696           80 -RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG--HSRCIRLLLADYIPSVPNAWNRLRKKS  156 (420)
Q Consensus        80 -~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~  156 (420)
                       .|..|.|||| |+..|+.+++++|+++|++++..+. .|+||||+|+..+  +.+++++|++++...            
T Consensus       136 ~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi------------  201 (446)
T PHA02946        136 SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLGISP------------  201 (446)
T ss_pred             ccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcCCCC------------
Confidence             6889999997 6678999999999999999999997 9999999998755  468999999875432            


Q ss_pred             cCCCCchhcccccchhhHHHH-HHhcC--CHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCC-HHHHHHHHHhCCC
Q 014696          157 NKTGSILEFDERYFHLEVLLH-LTLNG--HVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN-AQCCQILIAMGAS  232 (420)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~-aa~~g--~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~-~~iv~~Ll~~gad  232 (420)
                               +..+..+.+++| |+..+  +.+++++|+. |++++   .+|..|.||||+|++.++ .+++++|+++|++
T Consensus       202 ---------n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin---~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        202 ---------SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN---KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             ---------cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC---CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence                     223334445555 46665  8899999985 89999   778899999999999988 5899999999875


Q ss_pred             cc--------------------cc-ccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCC
Q 014696          233 LT--------------------AE-NANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGW  291 (420)
Q Consensus       233 ~~--------------------~~-d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~  291 (420)
                      .+                    .. +..|.||||+|+.+|+.+++++|++++..         +.+|+    .+|...|+
T Consensus       269 ~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~---------~~t~L----~~A~~~~~  335 (446)
T PHA02946        269 ITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDII---------CEDAM----YYAVLSEY  335 (446)
T ss_pred             CCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCc---------cccHH----HHHHHhCH
Confidence            42                    11 13577999999999999999999987642         34454    45556666


Q ss_pred             CCCCCC
Q 014696          292 RNSDSL  297 (420)
Q Consensus       292 ~~~~~~  297 (420)
                      .+++.+
T Consensus       336 ~~~v~~  341 (446)
T PHA02946        336 ETMVDY  341 (446)
T ss_pred             HHHHHH
Confidence            555544

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-32  Score=282.99  Aligned_cols=260  Identities=20%  Similarity=0.215  Sum_probs=174.0

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHH-----------------------------------
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSA-----------------------------------   59 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa-----------------------------------   59 (420)
                      .+.++||.|+..|+.++|+.|++.+|.... ..+..|+||||+|+                                   
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~-~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  118 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQNPELIY-ITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLD  118 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHhCcccch-hhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHH
Confidence            467999999999999999999999988543 33456789999665                                   


Q ss_pred             -----------------------------------HcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHH
Q 014696           60 -----------------------------------AQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI  104 (420)
Q Consensus        60 -----------------------------------~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll  104 (420)
                                                         ..|+.+++++|++.|+++|.+|..|.||||+|+..|+.++|++|+
T Consensus       119 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        119 EACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                                               567899999999999999999999999999999999999999999


Q ss_pred             HcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCC--------CC---------------
Q 014696          105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKT--------GS---------------  161 (420)
Q Consensus       105 ~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~--------~~---------------  161 (420)
                      ++|++++..+. .|.||||+|+..|+.+++++|++.+..................        ..               
T Consensus       199 ~~Gad~n~~~~-~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpL  277 (682)
T PHA02876        199 SYGADVNIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL  277 (682)
T ss_pred             HCCCCcCccCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            99999999886 8999999999999999999999766543221111000000000        00               


Q ss_pred             -------------------chhcccccchhhH-HHHHHhcC-CHHHHHHHHHcCCCcccccccCCCCccHHHHHHHc-CC
Q 014696          162 -------------------ILEFDERYFHLEV-LLHLTLNG-HVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG-GN  219 (420)
Q Consensus       162 -------------------~~~~~~~~~~~~~-~l~aa~~g-~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~-g~  219 (420)
                                         ..+.+..+..+.+ ++.|+..| +.+++++|+..|++++   ..+..|.||||+|+.. ++
T Consensus       278 h~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin---~~d~~g~TpLh~A~~~~~~  354 (682)
T PHA02876        278 HHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN---AADRLYITPLHQASTLDRN  354 (682)
T ss_pred             HHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC---CcccCCCcHHHHHHHhCCc
Confidence                               0001111112222 22234444 3555555555555555   4445555555555553 34


Q ss_pred             HHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          220 AQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       220 ~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++...  ..+..+.+|++.
T Consensus       355 ~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh~  414 (682)
T PHA02876        355 KDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALHF  414 (682)
T ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHHH
Confidence            556666666666666666666666666666666666666666655422  123344455543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-32  Score=272.59  Aligned_cols=241  Identities=18%  Similarity=0.208  Sum_probs=181.2

Q ss_pred             HHHHHHH--HcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHc-----CcHHHHHHHHHcCCCCCCccCCCCCHHHH
Q 014696           18 ERLVSAA--RDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ-----GHHEIVSLLIESGVDINLRNYRGQTALMQ   90 (420)
Q Consensus        18 ~~L~~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~   90 (420)
                      +.++.+.  ..++.++|++|+++|++++..+  ..|.||||.|+.+     ++.+++++|+++|+|+|.+|..|+||||+
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d--~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLD--NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC  115 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCC--CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence            4444333  3457899999999998887655  4458999988764     67899999999999999999999999999


Q ss_pred             HHHcC---cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC---HHHHHHHHHhcCCCChh----hHHHHhhhc----
Q 014696           91 ACQHG---HWEVVLTLILYKANIHRADYLNGGTALHLAALNGH---SRCIRLLLADYIPSVPN----AWNRLRKKS----  156 (420)
Q Consensus        91 A~~~g---~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~----~~~~~~~~~----  156 (420)
                      |+..+   +.+++++|+++|++++..+. .|.||||+|+..|+   .+++++|+++|......    ....+....    
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~  194 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNI  194 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhcc
Confidence            98875   67899999999999988886 89999999998887   89999999887654321    111111000    


Q ss_pred             cCC---------CCchhccccc-chhhHHH-------HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCC
Q 014696          157 NKT---------GSILEFDERY-FHLEVLL-------HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN  219 (420)
Q Consensus       157 ~~~---------~~~~~~~~~~-~~~~~~l-------~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~  219 (420)
                      ...         ......+..+ .+..+++       .+...++.+++++|+. ++|+|   .+|..|.||||+|+..|+
T Consensus       195 ~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN---~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        195 DRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDIN---QVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             ccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCC---CcCcCCccHHHHHHHcCc
Confidence            000         0000011111 1122222       1245567888888766 68998   778899999999999999


Q ss_pred             HHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          220 AQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       220 ~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      .+++++|+++|||++.+|..|+|||++|+.+++.++++.|++.+..
T Consensus       271 ~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        271 RKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             HHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999999988665

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.4e-32  Score=266.61  Aligned_cols=261  Identities=26%  Similarity=0.341  Sum_probs=207.5

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      +.++++||.|+.....+.++.|++.+++....+...  .+|+|+|+..|+.+.++.|+++|+|+|..|..|.||||.|+.
T Consensus        86 ~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~--~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   86 SADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNK--NAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAAR  163 (929)
T ss_pred             cccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhc--cCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence            466789999999999999999999999988776655  899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      +++.|..+.|++.|+++...+. +|++|+|.|+++|..++.+.++.+..                .......+-.+.++.
T Consensus       164 ~~~~E~~k~Li~~~a~~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g----------------~~r~~~in~~~n~~~  226 (929)
T KOG0510|consen  164 KNKVEAKKELINKGADPCKSDI-DGNFPIHEAARSGSKECMEIFLPEHG----------------YERQTHINFDNNEKA  226 (929)
T ss_pred             cChHHHHHHHHhcCCCCCcccC-cCCchHHHHHHhcchhhhhhhhcccc----------------chhhcccccccCCCC
Confidence            9999998999999999998886 99999999999999999999996210                111122223333444


Q ss_pred             HHHHH-HhcCCHHHHHHHHHcCCCcccc------------cccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 014696          174 VLLHL-TLNGHVESVQLLLDLGASVSEY------------LSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG  240 (420)
Q Consensus       174 ~~l~a-a~~g~~~~v~~Ll~~ga~~~~~------------~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G  240 (420)
                      +++|. +..|++++++.+|++|+.....            +..|++|.||||+|++.|+++.++.|+..|++++.++.++
T Consensus       227 ~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~  306 (929)
T KOG0510|consen  227 TPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDE  306 (929)
T ss_pred             cchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCC
Confidence            55554 7888888888888877655422            3567788888888888888888888888888888888888


Q ss_pred             CCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCCC
Q 014696          241 WTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSL  297 (420)
Q Consensus       241 ~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~~  297 (420)
                      .||||.|+.+|+.+.++-|++..+.......+-.+.+|+    +.|...|++.++++
T Consensus       307 ~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL----Hlaa~~gH~~v~ql  359 (929)
T KOG0510|consen  307 ESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL----HLAAKSGHDRVVQL  359 (929)
T ss_pred             CCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch----hhhhhcCHHHHHHH
Confidence            888888888888888888777444444444455666665    34556666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.3e-31  Score=258.78  Aligned_cols=193  Identities=20%  Similarity=0.170  Sum_probs=173.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      .+++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+. .+.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP-DIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC-CcccHHHHHHHCCC
Confidence            37899999999999999999999999999999999999999999999999999999999988765 89999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH
Q 014696          131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS  210 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp  210 (420)
                      .+++++|++.+.....                   .....+.++++.|+..|+.+++++|+++|++++   ..+..|.||
T Consensus        81 ~~~v~~Ll~~~~~~~~-------------------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~---~~~~~g~tp  138 (413)
T PHA02875         81 VKAVEELLDLGKFADD-------------------VFYKDGMTPLHLATILKKLDIMKLLIARGADPD---IPNTDKFSP  138 (413)
T ss_pred             HHHHHHHHHcCCcccc-------------------cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC---CCCCCCCCH
Confidence            9999999986432110                   011123455666699999999999999999999   678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCc
Q 014696          211 LHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGR  266 (420)
Q Consensus       211 Lh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~  266 (420)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999998873

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=6.8e-32  Score=259.88  Aligned_cols=208  Identities=31%  Similarity=0.401  Sum_probs=183.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHh-CCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CCCCCHHHHHHHc
Q 014696           17 GERLVSAARDGDLQEAKALLEY-NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN-YRGQTALMQACQH   94 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A~~~   94 (420)
                      ...++.|+++|+++.|+.|++. +.+++..+.  .|-|+||+||.+++++++++|+++|+++|..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~--~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDR--EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc--CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            3569999999999999999999 666655554  56899999999999999999999999999998 6689999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc-hhh
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-HLE  173 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (420)
                      |+..+|++|+++||+++.+|. +|.||||+|+..|+.-+|-+|+.++                     .+.+..+. +.+
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~~---------------------~d~d~~D~~grT  180 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSKG---------------------ADIDLRDNNGRT  180 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHhc---------------------ccCCCcCCCCCC
Confidence            999999999999999999997 9999999999999999999999774                     23333444 445


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHc
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW  250 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~  250 (420)
                      +++.||.+|+...+..||+.|+.++.  ..+..|.||||+|+..|+..++++|++.|++.+..|.+|+||+.+|.+.
T Consensus       181 pLmwAaykg~~~~v~~LL~f~a~~~~--~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  181 PLMWAAYKGFALFVRRLLKFGASLLL--TDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHhcccHHHHHHHHhcccccc--cccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            55566999998889999999999994  3348999999999999999999977788899999999999999999877

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=261.17  Aligned_cols=226  Identities=17%  Similarity=0.153  Sum_probs=160.5

Q ss_pred             CHHHHHHHHHhCCCcccccCCCCCCcHHHHHHH--cCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc-----CcHHHH
Q 014696           28 DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA--QGHHEIVSLLIESGVDINLRNYRGQTALMQACQH-----GHWEVV  100 (420)
Q Consensus        28 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~-----g~~~iv  100 (420)
                      +++.|+.|++.+. .+..   ..|.|+++.+..  .++.++|++|+++|+++|..|..|.||||.|+.+     ++.+++
T Consensus        17 ~~~~v~~ll~~~~-~~~~---~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI---VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh---cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            5789999998653 3322   234677774444  4589999999999999999999999999999864     678999


Q ss_pred             HHHHHcCCCCCccccCCCChHHHHHHHcC---CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH
Q 014696          101 LTLILYKANIHRADYLNGGTALHLAALNG---HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH  177 (420)
Q Consensus       101 ~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (420)
                      ++|+++|++++..+. .|.||||+|+.++   +.+++++|+++|+....                     .+..+.+++|
T Consensus        93 ~~Ll~~GadiN~~d~-~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~---------------------~d~~g~tpL~  150 (489)
T PHA02798         93 KILIENGADINKKNS-DGETPLYCLLSNGYINNLEILLFMIENGADTTL---------------------LDKDGFTMLQ  150 (489)
T ss_pred             HHHHHCCCCCCCCCC-CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc---------------------cCCCCCcHHH
Confidence            999999999999997 8999999999886   78999999998754321                     1112222222


Q ss_pred             -HHhc---CCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHc----CCHHHHHHHHHhC-------------------
Q 014696          178 -LTLN---GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG----GNAQCCQILIAMG-------------------  230 (420)
Q Consensus       178 -aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~----g~~~iv~~Ll~~g-------------------  230 (420)
                       ++..   .+.+++++|+++|++++.  ..+..|.||||.++..    ++.+++++|+++|                   
T Consensus       151 ~a~~~~~~~~~~vv~~Ll~~gadin~--~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        151 VYLQSNHHIDIEIIKLLLEKGVDINT--HNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHcCCcchHHHHHHHHHhCCCccc--ccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH
Confidence             2222   135555555555555542  1122345555544432    2444555544444                   


Q ss_pred             --------------------CCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHH
Q 014696          231 --------------------ASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV  283 (420)
Q Consensus       231 --------------------ad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l  283 (420)
                                          +|+|.+|..|+||||+|+.+|+.+++++|++.++..  ...+..+.+|++.++
T Consensus       229 ~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi--n~~d~~G~TpL~~A~  299 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI--NIITELGNTCLFTAF  299 (489)
T ss_pred             HHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc--cccCCCCCcHHHHHH
Confidence                                566778889999999999999999999999998872  335778888886543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=262.35  Aligned_cols=229  Identities=22%  Similarity=0.226  Sum_probs=187.5

Q ss_pred             ccccccCcc--cCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHH---------------
Q 014696            3 FLSIVGNSF--GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHE---------------   65 (420)
Q Consensus         3 ~l~~~g~~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~---------------   65 (420)
                      +|...|.+.  ....+.+|||.|+..|+.+.++.|++.+.....    ..+.++|+.|+..|+.+               
T Consensus        55 ~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~  130 (477)
T PHA02878         55 SLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT  130 (477)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCccc
Confidence            444445433  234667999999999999999999998755433    34578999999887754               


Q ss_pred             ------------------HHHHHHHcCCCCCCccCC-CCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           66 ------------------IVSLLIESGVDINLRNYR-GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        66 ------------------iv~~Ll~~g~~v~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                                        ++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~-~g~tpLh~A~  209 (477)
T PHA02878        131 IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAV  209 (477)
T ss_pred             CcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHH
Confidence                              666777789999999998 99999999999999999999999999999886 9999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH-HHh-cCCHHHHHHHHHcCCCcccccccC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH-LTL-NGHVESVQLLLDLGASVSEYLSVS  204 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-aa~-~g~~~~v~~Ll~~ga~~~~~~~~~  204 (420)
                      ..|+.+++++|++.+...                     +..+..+.+++| |+. .++.+++++|+++|++++   ..+
T Consensus       210 ~~~~~~iv~~Ll~~ga~i---------------------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn---~~~  265 (477)
T PHA02878        210 KHYNKPIVHILLENGAST---------------------DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN---AKS  265 (477)
T ss_pred             HhCCHHHHHHHHHcCCCC---------------------CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC---ccC
Confidence            999999999999875432                     222233444554 554 479999999999999999   444


Q ss_pred             C-CCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcC-chhHHHHhhhC
Q 014696          205 G-AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH-RTGLEDILSTQ  262 (420)
Q Consensus       205 ~-~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g-~~~i~~lL~~~  262 (420)
                      . .|.||||+|  .++.+++++|+++|+|+|..|..|+||||+|+..+ ..++.++|..+
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            4 799999999  57899999999999999999999999999999754 55777777654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=255.58  Aligned_cols=265  Identities=22%  Similarity=0.233  Sum_probs=220.2

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      ...++|.|+..|+.+.++.|++++.+++..++.  |.||||.|+.+++.|..+.|++.|+++-..|.+|.+|+|.|++.|
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~--~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~  198 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADVNLEDEN--GFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSG  198 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCccccccC--CCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhc
Confidence            346899999999999999999999888776654  489999999999999889999999999999999999999999999


Q ss_pred             cHHHHHHHHH-----cCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc-cc
Q 014696           96 HWEVVLTLIL-----YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE-RY  169 (420)
Q Consensus        96 ~~~iv~~Ll~-----~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (420)
                      ..|+.+..+.     .+..++..++ .|.||||.|+..|+.++++..++++........+.....      ....+. +.
T Consensus       199 s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~------kelv~~~d~  271 (929)
T KOG0510|consen  199 SKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQE------KELVNDEDN  271 (929)
T ss_pred             chhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHH------HHHhhcccc
Confidence            9999999998     6778888886 999999999999999999999998876655543322111      111222 33


Q ss_pred             chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHH-hC-CCccccccCCCCHHHHH
Q 014696          170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA-MG-ASLTAENANGWTPLMVA  247 (420)
Q Consensus       170 ~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~-~g-ad~~~~d~~G~TpL~~A  247 (420)
                      .+.++++.|++.|+.++++.|+..|++++   .++.++.||||.||..|+.+.|+.||+ .| ...|..|..|.||||+|
T Consensus       272 dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~---~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  272 DGCTPLHYAARQGGPESVDNLLGFGASIN---SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             cCCchHHHHHHcCChhHHHHHHHcCCccc---ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            34444555699999999999999999999   778999999999999999999999999 54 66788999999999999


Q ss_pred             HHcCchhHHHHhhhCCCCcccc-CCCCCCCchHHHHHHHHHHcCCCCCCC
Q 014696          248 RSWHRTGLEDILSTQPEGRLEV-LPSPYLALPLMSIVKIARECGWRNSDS  296 (420)
Q Consensus       248 ~~~g~~~i~~lL~~~~~~~~~~-~~~~~~~~pl~~~l~~a~~~g~~~~~~  296 (420)
                      ++.||..++++|+..++..... ..+..+.+++    +.|..+|....+.
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL----H~Aa~~g~~~av~  394 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL----HLAAKYGNTSAVQ  394 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhcccccccCCchhh----hHHHHhccHHHHH
Confidence            9999999999999999986631 1256666555    4555566554443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.7e-30  Score=229.28  Aligned_cols=177  Identities=19%  Similarity=0.259  Sum_probs=151.3

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcC--cHHHHHHHHHcCCCCCCcc-CCCCCHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQG--HHEIVSLLIESGVDINLRN-YRGQTALMQA   91 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A   91 (420)
                      ...+||+.|++.|+.+.|+.|++..   +.  .+..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~---n~--~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV---ND--CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh---hc--cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3458999999999999999999753   22  2345689999999854  8999999999999999997 4899999998


Q ss_pred             HHc---CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc
Q 014696           92 CQH---GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER  168 (420)
Q Consensus        92 ~~~---g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                      +..   ++.+++++|+++|++++..+. .|.||||+|+...                                       
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~~~~---------------------------------------  134 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDE-DGKNLLHMYMCNF---------------------------------------  134 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhc---------------------------------------
Confidence            764   479999999999999999987 9999999987531                                       


Q ss_pred             cchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHH-HHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHY-AACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       169 ~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~-Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                                  .++.+++++|+++|++++   .+|..|.||||. |+..++.+++++|+++|++++.+|..|+|||++|
T Consensus       135 ------------~~~~~iv~~Li~~gadin---~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        135 ------------NVRINVIKLLIDSGVSFL---NKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             ------------cCCHHHHHHHHHcCCCcc---cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence                        134566777778899998   778899999995 5678899999999999999999999999999999


Q ss_pred             HHcC
Q 014696          248 RSWH  251 (420)
Q Consensus       248 ~~~g  251 (420)
                      +.++
T Consensus       200 ~~~~  203 (209)
T PHA02859        200 KFRN  203 (209)
T ss_pred             hhhh
Confidence            8754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.3e-31  Score=213.94  Aligned_cols=190  Identities=29%  Similarity=0.324  Sum_probs=166.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCC-CCCCccC-CCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccccCCCChHHHHHHHc
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGV-DINLRNY-RGQTALMQACQHGHWEVVLTLI-LYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~-~v~~~d~-~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .++.+.++......-++-|++... .++.++. +|+||||+|+..|+.++|.+|+ +.+..++.+|+ .|+||||+|+..
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~   82 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASN   82 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhc
Confidence            578888888888888888888755 5677766 8999999999999999999999 56888888887 999999999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH-HHHhcCCHHHHHHHHHcCCCcccccccCCCC
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL-HLTLNGHVESVQLLLDLGASVSEYLSVSGAG  207 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g  207 (420)
                      |+.++|+.|+...                    ..+.+....++.+.+ +|+..|..+++++|+++|+.++   .+|..|
T Consensus        83 g~~evVk~Ll~r~--------------------~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~---~kD~~~  139 (226)
T KOG4412|consen   83 GNDEVVKELLNRS--------------------GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR---IKDKQG  139 (226)
T ss_pred             CcHHHHHHHhcCC--------------------CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc---cccccc
Confidence            9999999999541                    233344444555555 4599999999999999999999   789999


Q ss_pred             ccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       208 ~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      .||||-|+.-|+++++++|+..|+.+|..|+.|+||||.|.-.|+.++..+|.++++.
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD  197 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999889999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=255.95  Aligned_cols=239  Identities=21%  Similarity=0.206  Sum_probs=176.1

Q ss_pred             HcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHc--CcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC------c
Q 014696           25 RDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ--GHHEIVSLLIESGVDINLRNYRGQTALMQACQHG------H   96 (420)
Q Consensus        25 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g------~   96 (420)
                      ...+.++|+.|+++|++++.. .  .|.||||.++..  ++.++|++|+++|+++|.++ .+.||||.|+.++      +
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~--~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~   87 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-Y--RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKI   87 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-c--CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhH
Confidence            357899999999999998875 2  357998866554  47899999999999999887 5799999998754      5


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALN---GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .+++++|+++|++++..+. .|.||||.|+..   |+.+++++|+++|+...                    +..+..+.
T Consensus        88 ~~iv~~Ll~~Gadin~~d~-~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--------------------~~~d~~g~  146 (494)
T PHA02989         88 KKIVKLLLKFGADINLKTF-NGVSPIVCFIYNSNINNCDMLRFLLSKGINVN--------------------DVKNSRGY  146 (494)
T ss_pred             HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc--------------------cccCCCCC
Confidence            7899999999999999986 899999988765   68999999999865441                    11222233


Q ss_pred             HHHHH-H--hcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcC----CHHHHHHHHHhCCCc-------------
Q 014696          174 VLLHL-T--LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGG----NAQCCQILIAMGASL-------------  233 (420)
Q Consensus       174 ~~l~a-a--~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g----~~~iv~~Ll~~gad~-------------  233 (420)
                      +++|. +  ..++.+++++|+++|++++.  ..+..|.||||+|++.+    +.+++++|+++|+++             
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~--~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~  224 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFE--KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES  224 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccc--cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence            44443 2  23466666666666666662  13455666666665543    566666666666554             


Q ss_pred             -------------------------cccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHH
Q 014696          234 -------------------------TAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARE  288 (420)
Q Consensus       234 -------------------------~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~  288 (420)
                                               |.+|..|+||||+|+..|+.+++++|++.++..  ...+..+.+|++.    |..
T Consensus       225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi--n~~d~~G~TpL~~----A~~  298 (494)
T PHA02989        225 FLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI--YNVSKDGDTVLTY----AIK  298 (494)
T ss_pred             HHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc--cccCCCCCCHHHH----HHH
Confidence                                     555677999999999999999999999998863  3346778888754    445


Q ss_pred             cCCCCCCC
Q 014696          289 CGWRNSDS  296 (420)
Q Consensus       289 ~g~~~~~~  296 (420)
                      .|..+++.
T Consensus       299 ~~~~~iv~  306 (494)
T PHA02989        299 HGNIDMLN  306 (494)
T ss_pred             cCCHHHHH
Confidence            55555443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=8e-31  Score=242.67  Aligned_cols=190  Identities=32%  Similarity=0.408  Sum_probs=136.4

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHh-CCCc------ccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEY-NPRL------VRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTA   87 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~-~~~~------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~Tp   87 (420)
                      .+++||..||++|+.++|++|+++ +++.      ......-.|-+||..|+..||+++|+.|+++|+++|.......||
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStP  120 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTP  120 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCcc
Confidence            445677777777777777777763 2221      111111235567777777777777777777777777666666677


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc
Q 014696           88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE  167 (420)
Q Consensus        88 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (420)
                      |..||.-|+.++|++|+++|+|++..+. .|.|.||+|+.+||.+|+++|                              
T Consensus       121 LraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyL------------------------------  169 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYKGHVDIAQYL------------------------------  169 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeeccCchHHHHHH------------------------------
Confidence            7777777777777777777777777665 777777777766666655555                              


Q ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       168 ~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                                             ++.|+|+|   .++..|.|+||.+++.|++|++|+|+.+|+.++ +|..|.|||..|
T Consensus       170 -----------------------le~gADvn---~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~A  222 (615)
T KOG0508|consen  170 -----------------------LEQGADVN---AKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLA  222 (615)
T ss_pred             -----------------------HHhCCCcc---hhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHH
Confidence                                   56788888   677889999999999999999999999988876 666799999999


Q ss_pred             HHcCchhHHHHhhhC
Q 014696          248 RSWHRTGLEDILSTQ  262 (420)
Q Consensus       248 ~~~g~~~i~~lL~~~  262 (420)
                      +..|+.+++++|++.
T Consensus       223 a~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  223 AVTGHTDIVERLLQC  237 (615)
T ss_pred             hhhcchHHHHHHhcC
Confidence            999999999888853

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.5e-29  Score=255.80  Aligned_cols=260  Identities=19%  Similarity=0.136  Sum_probs=191.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCCccC---CC--------
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSA--AQGHHEIVSLLIESGVDINLRNY---RG--------   84 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~g~~v~~~d~---~g--------   84 (420)
                      .+++.|+..|+.++|+.|+++|++++..+.  .|+||||+|+  ..|+.+++++|+++|++++..|.   .|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~--~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCE--NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCC--CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            567788999999999999999999987655  4589999654  57899999999999999986653   34        


Q ss_pred             ---CCHHHHHHH-----------cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH--HHHHHHHHhcCCCC---
Q 014696           85 ---QTALMQACQ-----------HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS--RCIRLLLADYIPSV---  145 (420)
Q Consensus        85 ---~TpL~~A~~-----------~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~--~iv~~Ll~~~~~~~---  145 (420)
                         .||||+|+.           +++.++|++|+++|++++..+. .|.||||+|+.+|+.  ++|++|++ +....   
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence               599999986           5689999999999999999987 999999999999985  79999985 43221   


Q ss_pred             ----h-----hhHHH-Hhhh--cc------------CCCCchh-----cc--cc----------cchhhHH----HHHHh
Q 014696          146 ----P-----NAWNR-LRKK--SN------------KTGSILE-----FD--ER----------YFHLEVL----LHLTL  180 (420)
Q Consensus       146 ----~-----~~~~~-~~~~--~~------------~~~~~~~-----~~--~~----------~~~~~~~----l~aa~  180 (420)
                          +     ..... +...  ..            ..+....     .+  ..          ..+..++    +.++.
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMT  340 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHH
Confidence                0     00111 0000  00            0000000     00  00          1111222    22344


Q ss_pred             cCC--HHHHHHHHHcCCCcccc---------------------------cccCCCCccHHHHHHHcC-------------
Q 014696          181 NGH--VESVQLLLDLGASVSEY---------------------------LSVSGAGSTSLHYAACGG-------------  218 (420)
Q Consensus       181 ~g~--~~~v~~Ll~~ga~~~~~---------------------------~~~~~~g~TpLh~Aa~~g-------------  218 (420)
                      .|.  .+++++|+++||+++..                           ...+..|.||||.|++.+             
T Consensus       341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~  420 (661)
T PHA02917        341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK  420 (661)
T ss_pred             cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh
Confidence            665  56999999999988733                           123446999999987543             


Q ss_pred             ----------CHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHH
Q 014696          219 ----------NAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV  283 (420)
Q Consensus       219 ----------~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l  283 (420)
                                ..+++++|+++|||+|.+|..|+||||+|+..++.+++++|++.++..  ...+..+.+|+..+.
T Consensus       421 ~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi--n~~d~~G~T~L~~A~  493 (661)
T PHA02917        421 GLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV--NIRSNNGYTCIAIAI  493 (661)
T ss_pred             ccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHH
Confidence                      356789999999999999999999999999999999999999998873  235677888876543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6.8e-30  Score=236.55  Aligned_cols=126  Identities=32%  Similarity=0.466  Sum_probs=113.4

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+..||..|+..|++++|+.|+++++.+|.....+  .|||-.|+.-||+++||+|+++|+|+++.|+.|.|.||+|+.+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN--StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN--STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK  160 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccC--CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc
Confidence            45568999999999999999999998887665544  5999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP  143 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  143 (420)
                      |+.+|+++|++.|+|+|.++. .|.|+||.++..|+.+++++|+.++..
T Consensus       161 Gh~~I~qyLle~gADvn~ks~-kGNTALH~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  161 GHVDIAQYLLEQGADVNAKSY-KGNTALHDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             CchHHHHHHHHhCCCcchhcc-cCchHHHhhhhcccHHHHHHHHhCCce
Confidence            999999999999999999986 999999999999999999999987653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=237.02  Aligned_cols=210  Identities=17%  Similarity=0.086  Sum_probs=176.9

Q ss_pred             CHHHH-HHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC------CccCCCCCHHHHHHH--cCcHH
Q 014696           28 DLQEA-KALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN------LRNYRGQTALMQACQ--HGHWE   98 (420)
Q Consensus        28 ~~~~v-~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~------~~d~~g~TpL~~A~~--~g~~~   98 (420)
                      -++++ ++++.++.+++....++       +|+..+..|++++|+.+|++++      .++..++|+||+|+.  .|+.+
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~e  132 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-------LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEID  132 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-------HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHH
Confidence            34433 67888888887765544       9999999999999999999999      788899999999999  89999


Q ss_pred             HHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH-
Q 014696           99 VVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH-  177 (420)
Q Consensus        99 iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  177 (420)
                      +|++|+++|++++..   .+.||||.|+..|+.+++++|+++|+.......               .......+.++++ 
T Consensus       133 iV~~LI~~GADIn~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~---------------~~l~~~~~~t~l~~  194 (437)
T PHA02795        133 IVDFMVDHGAVIYKI---ECLNAYFRGICKKESSVVEFILNCGIPDENDVK---------------LDLYKIIQYTRGFL  194 (437)
T ss_pred             HHHHHHHCCCCCCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCccccccc---------------chhhhhhccchhHH
Confidence            999999999999874   468999999999999999999998763321100               0000012224444 


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCc-----
Q 014696          178 LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHR-----  252 (420)
Q Consensus       178 aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~-----  252 (420)
                      ++..++.+++++|+++|++++   .++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+     
T Consensus       195 a~~~~~~eIve~LIs~GADIN---~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        195 VDEPTVLEIYKLCIPYIEDIN---QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             HHhcCHHHHHHHHHhCcCCcC---cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            588899999999999999999   788999999999999999999999999999999999999999999999984     


Q ss_pred             ---hhHHHHhhhCCCC
Q 014696          253 ---TGLEDILSTQPEG  265 (420)
Q Consensus       253 ---~~i~~lL~~~~~~  265 (420)
                         .+++++|+++++.
T Consensus       272 ~~~~eIvelLL~~gad  287 (437)
T PHA02795        272 ETHLKILEILLREPLS  287 (437)
T ss_pred             ccHHHHHHHHHhCCCC
Confidence               6899999988764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=241.01  Aligned_cols=262  Identities=15%  Similarity=0.112  Sum_probs=199.9

Q ss_pred             CCCHHHH-HHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHH-cCcHHHHHHHHHcCCCCC--------------
Q 014696           15 ASGERLV-SAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAA-QGHHEIVSLLIESGVDIN--------------   78 (420)
Q Consensus        15 ~~~~~L~-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~-~g~~~iv~~Ll~~g~~v~--------------   78 (420)
                      .+-+.++ .|..+|++|+|+.|+++|++++.....  |.||||+|+. .++.|++++|+++|++++              
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~--~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNG--INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCcccccCC--CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            3444564 566789999999999999999876553  6899999966 699999999999998732              


Q ss_pred             ----------------------CccCCCCCHHHHHHHcC-------cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           79 ----------------------LRNYRGQTALMQACQHG-------HWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        79 ----------------------~~d~~g~TpL~~A~~~g-------~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                                            ..|..|.||||+|+.++       +.|+++.|+.+|++++..+. .|.||||+|+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~-~g~t~l~~~~~~~  226 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTY-REHTTLYYYVDKC  226 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCC-CCChHHHHHHHcc
Confidence                                  34567999999999999       89999999999999999997 8999999999999


Q ss_pred             --CHHHHHHHHHhcCCCChhhHHH----Hhhhc-----------------cCC---------------------------
Q 014696          130 --HSRCIRLLLADYIPSVPNAWNR----LRKKS-----------------NKT---------------------------  159 (420)
Q Consensus       130 --~~~iv~~Ll~~~~~~~~~~~~~----~~~~~-----------------~~~---------------------------  159 (420)
                        +.+++++|++....- ......    ++...                 +..                           
T Consensus       227 ~i~~ei~~~L~~~~~~~-~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  305 (631)
T PHA02792        227 DIKREIFDALFDSNYSG-NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDS  305 (631)
T ss_pred             cchHHHHHHHHhccccc-cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHH
Confidence              889999998642200 000000    00000                 000                           


Q ss_pred             -----------------------CCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC--CccHHHHH
Q 014696          160 -----------------------GSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA--GSTSLHYA  214 (420)
Q Consensus       160 -----------------------~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~--g~TpLh~A  214 (420)
                                             ....... .......++.|+..|+.+++++|+++|++++   .+|..  +.||||+|
T Consensus       306 ~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN---~kD~~g~~~TpLh~A  381 (631)
T PHA02792        306 IQDLLSEYVSYHTVYINVIKCMIDEGATLY-RFKHINKYFQKFDNRDPKVVEYILKNGNVVV---EDDDNIINIMPLFPT  381 (631)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHCCCccc-cCCcchHHHHHHHcCCHHHHHHHHHcCCchh---hhcCCCCChhHHHHH
Confidence                                   0000000 1113334566789999999999999999999   45544  57999998


Q ss_pred             HHcCCHH---HHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHH
Q 014696          215 ACGGNAQ---CCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIA  286 (420)
Q Consensus       215 a~~g~~~---iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a  286 (420)
                      +.....+   ++++|+++|||+|.+|..|+||||+|+..++.+++++|+++++..  ...+..+.+|+..+...+
T Consensus       382 ~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI--N~kD~~G~TpL~~A~~~~  454 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI--NITTKYGSTCIGICVILA  454 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHHH
Confidence            8776654   689999999999999999999999999999999999999998762  235778889987765433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=8.4e-29  Score=238.59  Aligned_cols=205  Identities=28%  Similarity=0.262  Sum_probs=180.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           52 NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      ..-+..|+++|+++-|+.|++. |.+++..|.+|.|+||+|+.+++.+++++|+++|+++|.....-+.||||||+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4678899999999999999999 999999999999999999999999999999999999999987789999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH-HHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH-LTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      ..+|++|+++|+.+.                     ..+..+..++| |++.|+.-+|-+||.+|+|++   .+|.+|+|
T Consensus       125 ~~vv~lLlqhGAdpt---------------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d---~~D~~grT  180 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPT---------------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADID---LRDNNGRT  180 (600)
T ss_pred             HHHHHHHHHcCCCCc---------------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccCC---CcCCCCCC
Confidence            999999999976543                     33344445555 499999999999999999999   88999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccc-cCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAEN-ANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d-~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      |||+|+.+|+...++.|++.|++++..| .+|.||||+|+..|+..++.+|++.++. ... .+.-+.+|.+-+
T Consensus       181 pLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~-~~~~g~tp~~LA  252 (600)
T KOG0509|consen  181 PLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD-LDK-TNTNGKTPFDLA  252 (600)
T ss_pred             HHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc-ccc-cccCCCCHHHHH
Confidence            9999999999998999999999999988 8999999999999999999955555444 322 344477777554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=6e-28  Score=247.50  Aligned_cols=208  Identities=19%  Similarity=0.156  Sum_probs=167.4

Q ss_pred             HHHHHHHHHhCCCcccccCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHH----HHH
Q 014696           29 LQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE----VVL  101 (420)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~----iv~  101 (420)
                      ++.|++|+..+...+.  .+..|+||||+|+..   |+.++|++|+++|++++..+..|+||||+|+..|+.+    +++
T Consensus        12 ~~~~~~l~~~~~~~~~--~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDT--RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccc--cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            5788999987765543  345669999997555   8899999999999999999999999999999999854    567


Q ss_pred             HHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH-H--
Q 014696          102 TLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH-L--  178 (420)
Q Consensus       102 ~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-a--  178 (420)
                      .|++.+...+..+   ..+++++|+.+|+.++|++|+++|+..                     +..+..+.++++ +  
T Consensus        90 ~Ll~~~~~~n~~~---~~~~~~~a~~~~~~e~vk~Ll~~Gadi---------------------n~~d~~g~T~L~~~~a  145 (661)
T PHA02917         90 ALLEATGYSNIND---FNIFSYMKSKNVDVDLIKVLVEHGFDL---------------------SVKCENHRSVIENYVM  145 (661)
T ss_pred             HHHhccCCCCCCC---cchHHHHHhhcCCHHHHHHHHHcCCCC---------------------CccCCCCccHHHHHHH
Confidence            8888755444433   347788899999999999999875433                     333444555554 3  


Q ss_pred             HhcCCHHHHHHHHHcCCCcccccccCCCC-----------ccHHHHHHH-----------cCCHHHHHHHHHhCCCcccc
Q 014696          179 TLNGHVESVQLLLDLGASVSEYLSVSGAG-----------STSLHYAAC-----------GGNAQCCQILIAMGASLTAE  236 (420)
Q Consensus       179 a~~g~~~~v~~Ll~~ga~~~~~~~~~~~g-----------~TpLh~Aa~-----------~g~~~iv~~Ll~~gad~~~~  236 (420)
                      +..|+.+++++|+++|++++.....+..|           .||||+|+.           .++.++|++|+++|+|+|.+
T Consensus       146 ~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~  225 (661)
T PHA02917        146 TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI  225 (661)
T ss_pred             ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC
Confidence            46799999999999999998432223334           599999986           46899999999999999999


Q ss_pred             ccCCCCHHHHHHHcCch--hHHHHhhhC
Q 014696          237 NANGWTPLMVARSWHRT--GLEDILSTQ  262 (420)
Q Consensus       237 d~~G~TpL~~A~~~g~~--~i~~lL~~~  262 (420)
                      |.+|+||||+|++.|+.  +++++|++.
T Consensus       226 d~~G~TpLh~A~~~g~~~~eivk~Li~g  253 (661)
T PHA02917        226 DKNYCTALQYYIKSSHIDIDIVKLLMKG  253 (661)
T ss_pred             CCCCCcHHHHHHHcCCCcHHHHHHHHhC
Confidence            99999999999999986  799999863

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=2.6e-29  Score=260.81  Aligned_cols=246  Identities=27%  Similarity=0.307  Sum_probs=148.8

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ....++++.|++.|.++.++.++..+...+..  .+.|.||||.|+.+++..+|+.++++|++++..+..|+||+|+|+.
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            35556788888888888888888888775443  3445788888888888888888888888888888888888888888


Q ss_pred             cC-cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh------------hhccCCC
Q 014696           94 HG-HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR------------KKSNKTG  160 (420)
Q Consensus        94 ~g-~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~------------~~~~~~~  160 (420)
                      .| ..+++..++++|.+++.... .|.||||.|+..||.++++.|++.+..........+.            .......
T Consensus       450 ~g~~~~~~~~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~  528 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE  528 (1143)
T ss_pred             cccHhhhhhhHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh
Confidence            88 77888888888888888775 8888888888888888888888764222211111000            0000000


Q ss_pred             Cchhcccccc-hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 014696          161 SILEFDERYF-HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN  239 (420)
Q Consensus       161 ~~~~~~~~~~-~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~  239 (420)
                      .....+.... +.++++.|+..|++++||+||++|+|++   .+++.|+||||.|+..|+.+|+.+|+++||++|..|.+
T Consensus       529 ~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~---ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  529 HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN---AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             cCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc---ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence            0111111111 1222223345555555555555555555   33445555555555555555555555555555555555


Q ss_pred             CCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          240 GWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       240 G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      |.|||++|+..|+.+++++|+..+..
T Consensus       606 g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  606 GFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CcchhHHHHHhcccchhhHHHhccCc
Confidence            55555555555555555555444443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=237.74  Aligned_cols=264  Identities=14%  Similarity=0.068  Sum_probs=187.7

Q ss_pred             CCCCHHHHHHHHcC---CHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcC--cHHHHHHHHHcCCC--CCCccCCCCC
Q 014696           14 SASGERLVSAARDG---DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQG--HHEIVSLLIESGVD--INLRNYRGQT   86 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~g~~--v~~~d~~g~T   86 (420)
                      ..+.+|||+|+..|   +.++|+.|+++|++++..+  ..|.||||+|+..+  +.|+|++|++.|++  ++..+..+.+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD--~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~  116 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRN--NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDF  116 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccC--CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCc
Confidence            35679999999997   5999999999999988654  45699999999977  79999999999654  4777777999


Q ss_pred             HHHHHHH--cCcHHHHHHHHH-cCCCCCcccc----CCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHH---------
Q 014696           87 ALMQACQ--HGHWEVVLTLIL-YKANIHRADY----LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWN---------  150 (420)
Q Consensus        87 pL~~A~~--~g~~~iv~~Ll~-~ga~~~~~~~----~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------  150 (420)
                      |||.++.  +++.++|++|++ .+.+++...+    ..|.+|+++|...++.++|++|+++|+........         
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c  196 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRC  196 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCcc
Confidence            9999988  999999999997 6778776532    37899999999999999999999998766311100         


Q ss_pred             -------HHhhh--ccC--------CCCchhcccccchhhHHHHH---HhcCCHHHHHHHHH------------------
Q 014696          151 -------RLRKK--SNK--------TGSILEFDERYFHLEVLLHL---TLNGHVESVQLLLD------------------  192 (420)
Q Consensus       151 -------~~~~~--~~~--------~~~~~~~~~~~~~~~~~l~a---a~~g~~~~v~~Ll~------------------  192 (420)
                             .+...  ...        .....+.+..+..+.+++|.   ...|+.|+|++|++                  
T Consensus       197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~  276 (672)
T PHA02730        197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRG  276 (672)
T ss_pred             chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhh
Confidence                   00000  000        01112234444455555541   34456777777777                  


Q ss_pred             --------------cCCCcccc-----------------cccCCCCcc---------------------HHHHHHHcC--
Q 014696          193 --------------LGASVSEY-----------------LSVSGAGST---------------------SLHYAACGG--  218 (420)
Q Consensus       193 --------------~ga~~~~~-----------------~~~~~~g~T---------------------pLh~Aa~~g--  218 (420)
                                    +|+|....                 ...+..|.+                     .||.-.+.+  
T Consensus       277 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~  356 (672)
T PHA02730        277 VLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM  356 (672)
T ss_pred             hHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc
Confidence                          56665420                 013344433                     555555544  


Q ss_pred             -CHHHHHHHHHhCCCccccccCCCCHHHHHHHcCc----hhHHHHhhhCCCCccccCCCCCCCchHH
Q 014696          219 -NAQCCQILIAMGASLTAENANGWTPLMVARSWHR----TGLEDILSTQPEGRLEVLPSPYLALPLM  280 (420)
Q Consensus       219 -~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~----~~i~~lL~~~~~~~~~~~~~~~~~~pl~  280 (420)
                       +.+++++|+++||++|.. ..|+||||+|+..++    .+++++|+++++.......+..+.+|+.
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence             577888888888888875 789999999988875    7999999999874212224556778775

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.2e-27  Score=208.10  Aligned_cols=176  Identities=20%  Similarity=0.139  Sum_probs=148.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC--cHHHHHHHHHcCCCCCccccCCCChHHHHHHH
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG--HWEVVLTLILYKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      .+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+.++  +.+++++|+++|++++..+...|.||||+|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            347999999999999999999985   5678889999999999865  89999999999999999875589999999875


Q ss_pred             cCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCC
Q 014696          128 NGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG  207 (420)
Q Consensus       128 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g  207 (420)
                      .++                                                  .++.+++++|+++|++++   .++..|
T Consensus        97 ~~~--------------------------------------------------~~~~eiv~~Ll~~gadin---~~d~~G  123 (209)
T PHA02859         97 FNK--------------------------------------------------NVEPEILKILIDSGSSIT---EEDEDG  123 (209)
T ss_pred             hCc--------------------------------------------------cccHHHHHHHHHCCCCCC---CcCCCC
Confidence            321                                                  124566777778899999   788999


Q ss_pred             ccHHHHHHH--cCCHHHHHHHHHhCCCccccccCCCCHHHH-HHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHH
Q 014696          208 STSLHYAAC--GGNAQCCQILIAMGASLTAENANGWTPLMV-ARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIV  283 (420)
Q Consensus       208 ~TpLh~Aa~--~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~-A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l  283 (420)
                      .||||+|+.  .++.+++++|+++|++++.+|.+|.||||. |+..++.+++++|++.+...  ...+..+.+|+..+.
T Consensus       124 ~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi--~~~d~~g~tpl~la~  200 (209)
T PHA02859        124 KNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI--NETNKSGYNCYDLIK  200 (209)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHh
Confidence            999999986  468999999999999999999999999995 56788999999999988752  235678888876543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=224.49  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=80.6

Q ss_pred             hhHHHH-HHhcCC----HHHHHHHHHcCC--CcccccccCCCCccHHHH---HHHcC---------CHHHHHHHHHhCCC
Q 014696          172 LEVLLH-LTLNGH----VESVQLLLDLGA--SVSEYLSVSGAGSTSLHY---AACGG---------NAQCCQILIAMGAS  232 (420)
Q Consensus       172 ~~~~l~-aa~~g~----~~~v~~Ll~~ga--~~~~~~~~~~~g~TpLh~---Aa~~g---------~~~iv~~Ll~~gad  232 (420)
                      +.+++| |+..++    .+++++|+++|+  +++   .++..|.||||.   |...+         ..+++++|+++|+|
T Consensus       378 G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN---~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD  454 (672)
T PHA02730        378 NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN---HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD  454 (672)
T ss_pred             CCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc---ccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc
Confidence            445555 666664    899999999998  466   667889999984   33232         23579999999999


Q ss_pred             ccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          233 LTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       233 ~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      +|.+|..|+||||+|+..++.+++++|+++++.. .......+.+|++.
T Consensus       455 INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI-N~~d~~~g~TaL~~  502 (672)
T PHA02730        455 IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV-NTTSRSIINTAIQK  502 (672)
T ss_pred             hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCcCCcCHHHH
Confidence            9999999999999999999999999999998863 22222246677654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=3.4e-27  Score=245.16  Aligned_cols=216  Identities=31%  Similarity=0.352  Sum_probs=177.2

Q ss_pred             CCCHHHHHHHHcC-CHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDG-DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      .+.+++|.|+..| ..+.+..+++.+.+.+.....+  -||||.|+..||.++++.|++.++..+.....|.|+||.|..
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G--~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQG--FTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhcccc--CcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhh
Confidence            3457788888888 6777777777777777665544  688888888888888888888887777777778888888888


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .+...+++.++++|++++.++. .|+||||+|+..|+.++|++|++++....                    .....+.+
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--------------------ak~~~G~T  575 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADVN--------------------AKDKLGYT  575 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehhcc-cccchHHHHHhcCCchHHHHhhhCCcccc--------------------ccCCCCCC
Confidence            8888888888888999988886 89999999999999999999998853221                    12244555


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC-----ccccccCCCCHHHHHH
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS-----LTAENANGWTPLMVAR  248 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad-----~~~~d~~G~TpL~~A~  248 (420)
                      +++.|+..|+.+++.+|+++|+++|   ..+.+|.||||+|++.|+.+++++|+..+++     ....+..|.+|..++.
T Consensus       576 PLH~Aa~~G~~~i~~LLlk~GA~vn---a~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELLLKHGASVN---AADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             hhhHHHHcChHHHHHHHHHcCCCCC---cccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHH
Confidence            5555699999999999999999999   7889999999999999999999999999999     7778889999999988


Q ss_pred             HcCchhHH
Q 014696          249 SWHRTGLE  256 (420)
Q Consensus       249 ~~g~~~i~  256 (420)
                      ..-....-
T Consensus       653 ~~~~~~~~  660 (1143)
T KOG4177|consen  653 ELDTDRQD  660 (1143)
T ss_pred             Hhhhhhhh
Confidence            76554443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=8.8e-26  Score=239.68  Aligned_cols=177  Identities=24%  Similarity=0.304  Sum_probs=157.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      .+.++||.||..|+.++++.|++.|+++|..|..|+||||+|+.+|+.+++++|+++|++++.+|. +|.||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHhC
Confidence            346899999999999999999999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|++.+....                      ......++..|+.+|+.+++++|+++|++++   ..|..|.|
T Consensus       603 ~~~iv~~L~~~~~~~~----------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin---~~d~~G~T  657 (823)
T PLN03192        603 HHKIFRILYHFASISD----------------------PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD---SEDHQGAT  657 (823)
T ss_pred             CHHHHHHHHhcCcccC----------------------cccCchHHHHHHHhCCHHHHHHHHHCCCCCC---CCCCCCCC
Confidence            9999999996532211                      1123345666799999999999999999999   77899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCC-CCHHHHHHHcCc
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANG-WTPLMVARSWHR  252 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G-~TpL~~A~~~g~  252 (420)
                      |||+|+..|+.+++++|+++|+|++..|..| .||++++.....
T Consensus       658 pLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        658 ALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999988 999988865433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=214.85  Aligned_cols=211  Identities=16%  Similarity=0.048  Sum_probs=169.6

Q ss_pred             HHHHcCCHHHHHHHHHhCCCcccc----cCCCCCCcHHHHHHH--cCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           22 SAARDGDLQEAKALLEYNPRLVRY----STFGVRNSPLHYSAA--QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        22 ~Aa~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      .|+..+..|+++.|+.++.+++..    .....++|+||+|+.  .|+.++|++|+++|+|++..  .+.||||.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            789999999999999999997711    133346899999999  99999999999999999985  4589999999999


Q ss_pred             cHHHHHHHHHcCCCCCcccc-----CCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc
Q 014696           96 HWEVVLTLILYKANIHRADY-----LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF  170 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~-----~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (420)
                      +.+++++|+.+|++......     ..+.|++|.|...++.+++++|+++|+..                     +..+.
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI---------------------N~kD~  219 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI---------------------NQLDA  219 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc---------------------CcCCC
Confidence            99999999999985433321     24789999999999999999999875432                     22333


Q ss_pred             -hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCC--------HHHHHHHHHhCCCccccccCCC
Q 014696          171 -HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN--------AQCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       171 -~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~--------~~iv~~Ll~~gad~~~~d~~G~  241 (420)
                       +.++++.|+..|+.+++++|+++|++++   .++..|.||||+|+..|+        .+++++|+++|++++.....  
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~~GAdIN---~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~--  294 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLENGANVN---AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA--  294 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH--
Confidence             3445555699999999999999999999   778999999999999984        69999999999998765432  


Q ss_pred             CHHHHHHHcCchhHHHHhhhCC
Q 014696          242 TPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       242 TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                       .+..  ...+.++++.+.++.
T Consensus       295 -~~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        295 -ILNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             -hhhc--ccchHHHHHHHHHHH
Confidence             2211  112567777776654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.1e-25  Score=219.32  Aligned_cols=222  Identities=14%  Similarity=0.083  Sum_probs=162.5

Q ss_pred             CHHHHHHHH-cCCHHHHHHHHHhCCCccc--c--------------------------------cCCCCCCcHHHHHHHc
Q 014696           17 GERLVSAAR-DGDLQEAKALLEYNPRLVR--Y--------------------------------STFGVRNSPLHYSAAQ   61 (420)
Q Consensus        17 ~~~L~~Aa~-~g~~~~v~~Ll~~~~~~~~--~--------------------------------~~~~~g~t~Lh~Aa~~   61 (420)
                      .++++.|+. .|+.|++++|++.|++...  .                                ..+..|+||||+|+..
T Consensus       106 ~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~  185 (631)
T PHA02792        106 NIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT  185 (631)
T ss_pred             CcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh
Confidence            467788866 6999999999999976311  0                                1223489999999999


Q ss_pred             C-------cHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC--cHHHHHHHHHc--------------------------
Q 014696           62 G-------HHEIVSLLIESGVDINLRNYRGQTALMQACQHG--HWEVVLTLILY--------------------------  106 (420)
Q Consensus        62 g-------~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~--------------------------  106 (420)
                      +       +.++++.|+++|++++..|..|.||||+|+.+.  ..|++++|++.                          
T Consensus       186 ~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~i  265 (631)
T PHA02792        186 RSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKI  265 (631)
T ss_pred             CCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCc
Confidence            9       899999999999999999999999999999888  66676666542                          


Q ss_pred             -----------------------------------------------------------------CCCCCccccCCCChH
Q 014696          107 -----------------------------------------------------------------KANIHRADYLNGGTA  121 (420)
Q Consensus       107 -----------------------------------------------------------------ga~~~~~~~~~g~tp  121 (420)
                                                                                       |+++..   .....+
T Consensus       266 d~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r---~~~~n~  342 (631)
T PHA02792        266 DNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR---FKHINK  342 (631)
T ss_pred             cHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc---CCcchH
Confidence                                                                             222110   012233


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccch--hhHHHHHH-hcCC---HHHHHHHHHcCC
Q 014696          122 LHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH--LEVLLHLT-LNGH---VESVQLLLDLGA  195 (420)
Q Consensus       122 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~aa-~~g~---~~~v~~Ll~~ga  195 (420)
                      ++.|+..|+.+++++|+++|+.                     .+..+..  ..+++|++ ....   .+++++|+++|+
T Consensus       343 ~~~Aa~~gn~eIVelLIs~GAD---------------------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA  401 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILKNGNV---------------------VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID  401 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCc---------------------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC
Confidence            4444444555555555444322                     1222222  23555653 3333   346899999999


Q ss_pred             CcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHH---c-------CchhHHHHhhhCCCC
Q 014696          196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS---W-------HRTGLEDILSTQPEG  265 (420)
Q Consensus       196 ~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~---~-------g~~~i~~lL~~~~~~  265 (420)
                      +++   .+|..|.||||+|+..++.+++++|+++|++++.+|..|+|||++|+.   .       ...+++++|++++..
T Consensus       402 DIN---~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        402 DIN---KIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             ccc---cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999   788999999999999999999999999999999999999999999976   2       235668888877644

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.8e-25  Score=234.44  Aligned_cols=237  Identities=23%  Similarity=0.196  Sum_probs=176.4

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHH-HHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLH-YSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQAC   92 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh-~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~   92 (420)
                      +...++|+.|++.||.+.|+.+++.+...+....+..|+|||| .|+..++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3556799999999999999999998444444445567799999 8999999999999999987    6778999999999


Q ss_pred             HcC---cHHHHHHHHHcCCC------CC---ccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCC
Q 014696           93 QHG---HWEVVLTLILYKAN------IH---RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG  160 (420)
Q Consensus        93 ~~g---~~~iv~~Ll~~ga~------~~---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  160 (420)
                      ..+   ...+++++.+.+.+      ++   ..+...|.||||+|+.+|+.++|++|+++|+.............     
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~-----  165 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK-----  165 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc-----
Confidence            732   23344444444422      11   11223699999999999999999999998876552111100000     


Q ss_pred             CchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcC---------CHHHHHHHHHhCC
Q 014696          161 SILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGG---------NAQCCQILIAMGA  231 (420)
Q Consensus       161 ~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g---------~~~iv~~Ll~~ga  231 (420)
                       ....+....+.+++..|+..|+.+++++|+++|+|++   ..|..|+||||+|+..+         ...+.+++++.++
T Consensus       166 -~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin---~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~  241 (743)
T TIGR00870       166 -SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL---TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD  241 (743)
T ss_pred             -CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh---hHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence             0000111223445555699999999999999999999   77889999999999987         2346677777655


Q ss_pred             Cc-------cccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          232 SL-------TAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       232 d~-------~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      ..       +..|.+|.||||+|++.|+.+++++|++..
T Consensus       242 ~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       242 KLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             ccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            54       667999999999999999999999999853

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.6e-25  Score=187.20  Aligned_cols=217  Identities=24%  Similarity=0.251  Sum_probs=183.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      +-+-.|.+.|+-+.+..++...++...... ..|.++++.|+-.|+.+.+..++.+|+..|..+--+++|+++++...++
T Consensus        64 ~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~-p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L  142 (296)
T KOG0502|consen   64 SLLTVAVRSGNSDVAVQSAQLDPDAIDETD-PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHL  142 (296)
T ss_pred             cccchhhhcCCcHHHHHhhccCCCCCCCCC-chhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHH
Confidence            346678889999999888887776654443 3479999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH  177 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (420)
                      +.+..+.+..  +|..|. .|.|||.||+..|++.+|++|++.|+.+....                    .....++..
T Consensus       143 ~~~~~~~~n~--VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lg--------------------k~resALsL  199 (296)
T KOG0502|consen  143 DVVDLLVNNK--VNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADPDALG--------------------KYRESALSL  199 (296)
T ss_pred             HHHHHHhhcc--ccCccc-cCchHhHHHHhcCchHHHHHHHHcCCChhhhh--------------------hhhhhhHhH
Confidence            9888776544  556665 99999999999999999999998865443211                    112345555


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHH
Q 014696          178 LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLED  257 (420)
Q Consensus       178 aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~  257 (420)
                      |...|..++|++||+.+.|+|   ..|-+|-|||-||++.++.++|+.|++.|||++..+..|++++.+|+..|+. +++
T Consensus       200 At~ggytdiV~lLL~r~vdVN---vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vq  275 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDVN---VYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQ  275 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCcc---eeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHH
Confidence            688999999999999999999   6788999999999999999999999999999999999999999999999998 555


Q ss_pred             HhhhC
Q 014696          258 ILSTQ  262 (420)
Q Consensus       258 lL~~~  262 (420)
                      ..+++
T Consensus       276 qvie~  280 (296)
T KOG0502|consen  276 QVIEK  280 (296)
T ss_pred             HHHHH
Confidence            55443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.6e-25  Score=200.17  Aligned_cols=162  Identities=27%  Similarity=0.382  Sum_probs=141.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHc-----CcHHHHHHHHHcCCCCCccccCCCCh
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIESG-VDINLRNYRGQTALMQACQH-----GHWEVVLTLILYKANIHRADYLNGGT  120 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g-~~v~~~d~~g~TpL~~A~~~-----g~~~iv~~Ll~~ga~~~~~~~~~g~t  120 (420)
                      .+.+|+|+||||+.++++++|+.||+.| +++|.+|+.|+||+|+|+..     .+.++|..|.+.| |+|.+-...|+|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            3456799999999999999999999986 78999999999999998853     4677888888765 777777678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc
Q 014696          121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY  200 (420)
Q Consensus       121 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~  200 (420)
                      +|++|+.+|+.++|+.||                                                     .-|+|+|  
T Consensus       343 ALMLAVSHGr~d~vk~LL-----------------------------------------------------acgAdVN--  367 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALL-----------------------------------------------------ACGADVN--  367 (452)
T ss_pred             hhhhhhhcCcHHHHHHHH-----------------------------------------------------HccCCCc--
Confidence            999999888877666665                                                     6789999  


Q ss_pred             cccCCCCccHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          201 LSVSGAGSTSLHYAACGGNAQCCQILIAM-GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       201 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                       .+|.+|.|+||.|+++||.||+++||.. +.|....|.+|.|+|.+|...||.+|.-+|..+-..
T Consensus       368 -iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~  432 (452)
T KOG0514|consen  368 -IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNI  432 (452)
T ss_pred             -cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHHh
Confidence             8899999999999999999999999987 899999999999999999999999999999876544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=4.1e-24  Score=208.74  Aligned_cols=230  Identities=30%  Similarity=0.345  Sum_probs=184.3

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+-++||.|+.+|+.++++.|+++.+-+...+.  .|.+|||+|+..|+.+++++|+.++..+|..+..|.||||.|++
T Consensus        47 ~~gfTalhha~Lng~~~is~llle~ea~ldl~d~--kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   47 YSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT--KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             ccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc--cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence            3566889999999999999999999887776663  45899999999999999999999998889999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      +||.+++++|+++|+++-..++ .+.|+|.+|++.|..++++.|+..... .  .        ......  -........
T Consensus       125 hgh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~qfgr~~Vvq~ll~~~~~-~--~--------~~~~~~--~~~~~~~~~  190 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADPFIRNN-SKETVLDLASRFGRAEVVQMLLQKKFP-V--Q--------SSLRVG--DIKRPFPAI  190 (854)
T ss_pred             hcchHHHHHHHhcCCCccccCc-ccccHHHHHHHhhhhHHHHHHhhhccc-h--h--------hcccCC--CCCCCCCCc
Confidence            9999999999999999999887 899999999999999999999865100 0  0        011111  222333344


Q ss_pred             HHHH-HHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHc--
Q 014696          174 VLLH-LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW--  250 (420)
Q Consensus       174 ~~l~-aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~--  250 (420)
                      ..+| |+++||.++++.|++.|.++|.   .. ..-|+||.|+..|..++|++|++.|.+...+|.+|+|+|.+-...  
T Consensus       191 ~plHlaakngh~~~~~~ll~ag~din~---~t-~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  191 YPLHLAAKNGHVECMQALLEAGFDINY---TT-EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             CCcchhhhcchHHHHHHHHhcCCCccc---cc-ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch
Confidence            4455 5999999999999999999994   33 345899999999999999999999999999999999999887665  


Q ss_pred             -CchhHHHHhhhCC
Q 014696          251 -HRTGLEDILSTQP  263 (420)
Q Consensus       251 -g~~~i~~lL~~~~  263 (420)
                       ...+++-++....
T Consensus       267 ~~~~ei~ga~~~~~  280 (854)
T KOG0507|consen  267 NRRYEIAGAVKNFE  280 (854)
T ss_pred             hhhhhhhhhhhccc
Confidence             3445555555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-24  Score=209.93  Aligned_cols=214  Identities=22%  Similarity=0.262  Sum_probs=162.4

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .+.+|.|+||.|+.+|+.+++++|++..+-++..|..|.+|||+|+..|+.++|++|+.++..+|.... .|.||||.|+
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaa  123 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAA  123 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhh
Confidence            334678999999999999999999999999999999999999999999999999999999988887775 9999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHH-HhcCCHHHHHHHHHcCCCcccccccCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSG  205 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a-a~~g~~~~v~~Ll~~ga~~~~~~~~~~  205 (420)
                      .+||.+++.+|+.++........        ......+.... ++..-.... +.. .+ .+.++...| + .   .++-
T Consensus       124 qhgh~dvv~~Ll~~~adp~i~nn--------s~~t~ldlA~q-fgr~~Vvq~ll~~-~~-~~~~~~~~~-~-~---~~~~  187 (854)
T KOG0507|consen  124 QHGHLEVVFYLLKKNADPFIRNN--------SKETVLDLASR-FGRAEVVQMLLQK-KF-PVQSSLRVG-D-I---KRPF  187 (854)
T ss_pred             hhcchHHHHHHHhcCCCccccCc--------ccccHHHHHHH-hhhhHHHHHHhhh-cc-chhhcccCC-C-C---CCCC
Confidence            99999999999988765432111        00111111111 111111111 222 22 222344444 1 1   4566


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHH
Q 014696          206 AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLM  280 (420)
Q Consensus       206 ~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~  280 (420)
                      .+.+|||.|+++|+.++++.|+++|.|+|.....| |+||.|+.-|..+++.+|++.+-..  ...+.++++.+.
T Consensus       188 ~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~--h~~n~~~qtald  259 (854)
T KOG0507|consen  188 PAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINT--HIKNQHGQTALD  259 (854)
T ss_pred             CCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhcccc--ccccccchHHHH
Confidence            78999999999999999999999999999888776 8999999999999999999987653  334566666553

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.9e-24  Score=181.99  Aligned_cols=202  Identities=27%  Similarity=0.257  Sum_probs=177.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+..+++.|+-.|+.+++..++.++...+..+..+  .+|+.+++.+-+++.+..+.++  .+|..|..|.|||++|+.+
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p--~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMP--WSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccCCcccccc--CChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc
Confidence            45567999999999999999999998888776655  7999999999999999988887  7899999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV  174 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (420)
                      |++++|++|++.|++++.... ...|+|.+|.+.|..+||++|++.+......                    ...++++
T Consensus       171 G~i~vV~fLL~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r~vdVNvy--------------------DwNGgTp  229 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGADPDALGK-YRESALSLATRGGYTDIVELLLTREVDVNVY--------------------DWNGGTP  229 (296)
T ss_pred             CchHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhcCCCccee--------------------ccCCCce
Confidence            999999999999999998875 7889999999999999999999764333222                    2235677


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHH
Q 014696          175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLM  245 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~  245 (420)
                      +++|++.||.++++.|++.|++++   ..+..|.++|..|+..|+. +|+..+++.++.+.+|..-+||+|
T Consensus       230 LlyAvrgnhvkcve~Ll~sGAd~t---~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNSGADVT---QEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeecCChHHHHHHHHhcCCCcc---cccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            888899999999999999999999   7888999999999999998 999999998888888887777764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=9.3e-24  Score=199.70  Aligned_cols=229  Identities=28%  Similarity=0.333  Sum_probs=170.0

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      ..+-.+..|...|+.+.|+.|+..+...+....++  .|+||-++.-.+.++|++|+++|++||..|..|+||||.|+..
T Consensus        39 ~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~Dg--lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   39 EDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDG--LTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             CchHHHHhccccccHHHHHHHhccCCCccccCCcc--chhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc
Confidence            44567899999999999999999998887666554  8999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhH-----HHHhhhccCCCCchhccccc
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAW-----NRLRKKSNKTGSILEFDERY  169 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  169 (420)
                      |+..++++|+.+|+++...+. .|..|+..+...-..+++..-............     ..+.............+..+
T Consensus       117 g~~~i~~~li~~gA~~~avNs-dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNS-DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccC-CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            999999999999999988876 888888877655555444443322111100000     00000000001111122222


Q ss_pred             chhhHHHH-HHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          170 FHLEVLLH-LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       170 ~~~~~~l~-aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      ..+.+.+| |+.+|..++.++|++.|.+++   .+|.+|+||||.|+..|..+++++|+++|++.+.++..|.||+.+|.
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~---~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGYSVN---IKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhccCcc---cccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            22444444 488888888888888888888   67788888888888888888888888888888888888888888876


Q ss_pred             H
Q 014696          249 S  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       273 e  273 (527)
T KOG0505|consen  273 E  273 (527)
T ss_pred             h
Confidence            5

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=173.61  Aligned_cols=137  Identities=18%  Similarity=0.183  Sum_probs=116.3

Q ss_pred             CCCcHHHHHHHcCcH----HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHH---HHHHHHcCCCCCccccCCCChHH
Q 014696           50 VRNSPLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEV---VLTLILYKANIHRADYLNGGTAL  122 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~----~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~i---v~~Ll~~ga~~~~~~~~~g~tpL  122 (420)
                      .+.++||+|++.|+.    +++++|++.|++++.+|..|+||||+|+.+|+.+.   +++|+++|++++.++...|.|||
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpL   98 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLL   98 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHH
Confidence            446899999999998    66677888899999999999999999999987654   78999999999988744799999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccc
Q 014696          123 HLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS  202 (420)
Q Consensus       123 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~  202 (420)
                      |+|+..|+.+++++|++                                                    +.|++++   .
T Consensus        99 h~A~~~g~~~iv~~Ll~----------------------------------------------------~~gad~~---~  123 (166)
T PHA02743         99 HIAASTKNYELAEWLCR----------------------------------------------------QLGVNLG---A  123 (166)
T ss_pred             HHHHHhCCHHHHHHHHh----------------------------------------------------ccCCCcc---C
Confidence            99998888877776663                                                    2467777   6


Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 014696          203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       203 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~  241 (420)
                      ++..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus       124 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        124 INYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            678899999999999999999999999999998887764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=6.2e-22  Score=210.39  Aligned_cols=180  Identities=21%  Similarity=0.248  Sum_probs=150.7

Q ss_pred             cCcccCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCH
Q 014696            8 GNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTA   87 (420)
Q Consensus         8 g~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~Tp   87 (420)
                      +...+......+|+.||..|+.+.++.|++.+.+++..+  ..|+||||+|+.+|+.+++++|+++|+++|.+|.+|+||
T Consensus       517 ~~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d--~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~Tp  594 (823)
T PLN03192        517 GGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGD--SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA  594 (823)
T ss_pred             ccccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            333344455688999999999999999999999887654  456999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc
Q 014696           88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE  167 (420)
Q Consensus        88 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (420)
                      ||+|+..|+.+++++|++.++..+.   ..|.++||.|+..|+.+++++|++++...                     +.
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi---------------------n~  650 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFASISDP---HAAGDLLCTAAKRNDLTAMKELLKQGLNV---------------------DS  650 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCcccCc---ccCchHHHHHHHhCCHHHHHHHHHCCCCC---------------------CC
Confidence            9999999999999999988776543   35789999999999999999999875432                     22


Q ss_pred             ccchh-hHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCC-ccHHHHHHH
Q 014696          168 RYFHL-EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG-STSLHYAAC  216 (420)
Q Consensus       168 ~~~~~-~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g-~TpLh~Aa~  216 (420)
                      .+..+ ++++.|+..|+.+++++|+++|++++   ..+..| .||+.++..
T Consensus       651 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~---~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        651 EDHQGATALQVAMAEDHVDMVRLLIMNGADVD---KANTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHH
Confidence            33334 44555599999999999999999999   666667 888877643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=5e-22  Score=209.76  Aligned_cols=230  Identities=20%  Similarity=0.152  Sum_probs=163.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHc--CCCCCCccCCCCCHHH-HHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIES--GVDINLRNYRGQTALM-QACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~--g~~v~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .++..++.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+ ..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~-~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RG-AVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC-CcChHHHHHHH
Confidence            346899999999999999999998  8999999999999999 8999999999999999987    33 38999999998


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCccccc-----
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYL-----  201 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~-----  201 (420)
                      .. +.+.++.++.............      .............+.++++.|+.+|+.++|++|+++|++++...     
T Consensus        91 ~~-~~~~v~~ll~~l~~~~~~~~~~------~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~  163 (743)
T TIGR00870        91 LE-YVDAVEAILLHLLAAFRKSGPL------ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFF  163 (743)
T ss_pred             hc-cHHHHHHHHHHHhhcccccCch------hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh
Confidence            73 3343443332211100000000      00000001111234455666699999999999999999998431     


Q ss_pred             ------ccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcC---------chhHHHHhhhCCCCc
Q 014696          202 ------SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH---------RTGLEDILSTQPEGR  266 (420)
Q Consensus       202 ------~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g---------~~~i~~lL~~~~~~~  266 (420)
                            .....|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++....+..
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence                  11135899999999999999999999999999999999999999999986         234555665544332


Q ss_pred             c-----ccCCCCCCCchHHHHHHHHHHcCCCCCC
Q 014696          267 L-----EVLPSPYLALPLMSIVKIARECGWRNSD  295 (420)
Q Consensus       267 ~-----~~~~~~~~~~pl~~~l~~a~~~g~~~~~  295 (420)
                      .     ....+..+.+|++    .|.+.|..++.
T Consensus       244 ~~~~el~~i~N~~g~TPL~----~A~~~g~~~l~  273 (743)
T TIGR00870       244 RDSKELEVILNHQGLTPLK----LAAKEGRIVLF  273 (743)
T ss_pred             CChHhhhhhcCCCCCCchh----hhhhcCCccHH
Confidence            1     1334667777764    34445544443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-22  Score=181.30  Aligned_cols=162  Identities=29%  Similarity=0.356  Sum_probs=139.1

Q ss_pred             cccCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHc-----CcHHHHHHHHHcCCCCCCcc-CC
Q 014696           10 SFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ-----GHHEIVSLLIESGVDINLRN-YR   83 (420)
Q Consensus        10 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~iv~~Ll~~g~~v~~~d-~~   83 (420)
                      .+..++++|+||+|+..+|+++|+.||+.+...... .+.-|+||+|+|+..     .+.++|..|...| |||.+- ..
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~-qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQ-QNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccc-cccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            456688999999999999999999999988543322 233468999998873     6789999999876 788765 46


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCch
Q 014696           84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSIL  163 (420)
Q Consensus        84 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  163 (420)
                      |+|+||+|+.+|+.++|+.||..|+|+|.+|+ +|.|+|+.|+.+||.||+++||..                       
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~-----------------------  395 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAV-----------------------  395 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhcc-----------------------
Confidence            99999999999999999999999999999998 999999999999999999999953                       


Q ss_pred             hcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHh
Q 014696          164 EFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM  229 (420)
Q Consensus       164 ~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~  229 (420)
                                                   .+.|..   ..|.+|.|+|.+|...|+.||.-+|..+
T Consensus       396 -----------------------------p~cd~s---LtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  396 -----------------------------PSCDIS---LTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             -----------------------------Ccccce---eecCCCchhhhhHHhcCchHHHHHHHHH
Confidence                                         233444   6788999999999999999999998875

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=168.53  Aligned_cols=136  Identities=23%  Similarity=0.324  Sum_probs=117.2

Q ss_pred             CCCccCCCCCHHHHHHHcCcHHHHHHHHH------cCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHH
Q 014696           77 INLRNYRGQTALMQACQHGHWEVVLTLIL------YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWN  150 (420)
Q Consensus        77 v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~------~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  150 (420)
                      ++.+|..|.||||+|++.|+.++++.|+.      .|++++..+. .|.||||+|+..|+.+++.               
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~~---------------   77 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD-AGQMCIHIAAEKHEAQLAA---------------   77 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC-CCCcHHHHHHHcCChHHHH---------------
Confidence            44667889999999999999999998854      3678888886 8999999999998865432               


Q ss_pred             HHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCC-CCccHHHHHHHcCCHHHHHHHHH-
Q 014696          151 RLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNAQCCQILIA-  228 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~-  228 (420)
                                                        +++++|++.|++++   .++. .|.||||+|+..++.+++++|++ 
T Consensus        78 ----------------------------------~ii~~Ll~~gadin---~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~  120 (169)
T PHA02741         78 ----------------------------------EIIDHLIELGADIN---AQEMLEGDTALHLAAHRRDHDLAEWLCCQ  120 (169)
T ss_pred             ----------------------------------HHHHHHHHcCCCCC---CCCcCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence                                              34567788899998   6664 89999999999999999999998 


Q ss_pred             hCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          229 MGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       229 ~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      .|++++.+|..|+|||++|+..++.+++++|++..+.
T Consensus       121 ~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        121 PGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999987554

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=2.5e-21  Score=166.85  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=112.8

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHH------cCCCCCCccCCCCCHHHHHHHcCc----HHHHHHHHHcCCCCCccccCCC
Q 014696           49 GVRNSPLHYSAAQGHHEIVSLLIE------SGVDINLRNYRGQTALMQACQHGH----WEVVLTLILYKANIHRADYLNG  118 (420)
Q Consensus        49 ~~g~t~Lh~Aa~~g~~~iv~~Ll~------~g~~v~~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~ga~~~~~~~~~g  118 (420)
                      ..|.||||+|+..|+.+++++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|++++.++...|
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g   98 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG   98 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence            456899999999999999999864      368899999999999999999998    5899999999999998874489


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 014696          119 GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVS  198 (420)
Q Consensus       119 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~  198 (420)
                      .||||+|+..++.+++++|++.                                                    .|++++
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~----------------------------------------------------~g~~~~  126 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQ----------------------------------------------------PGIDLH  126 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC----------------------------------------------------CCCCCC
Confidence            9999999999988887777631                                                    356666


Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCc
Q 014696          199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL  233 (420)
Q Consensus       199 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~  233 (420)
                         ..+..|.||||+|+..|+.+++++|++.++..
T Consensus       127 ---~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        127 ---FCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             ---cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence               66788999999999999999999999987654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=166.37  Aligned_cols=141  Identities=23%  Similarity=0.295  Sum_probs=123.8

Q ss_pred             cCCCCCCccCCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhh
Q 014696           73 SGVDINLRNYRGQTALMQACQHGHW----EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNA  148 (420)
Q Consensus        73 ~g~~v~~~d~~g~TpL~~A~~~g~~----~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  148 (420)
                      +|++++..+..+.++||+|++.|+.    +++++|++.|++++..+. .|+||||+|+..|+.+.+              
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~--------------   73 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAV--------------   73 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHH--------------
Confidence            5778888888999999999999998    677788889999988886 899999999998876542              


Q ss_pred             HHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccC-CCCccHHHHHHHcCCHHHHHHHH
Q 014696          149 WNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVS-GAGSTSLHYAACGGNAQCCQILI  227 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~-~~g~TpLh~Aa~~g~~~iv~~Ll  227 (420)
                                                          +++++|+++|++++   .++ ..|.||||+|+..|+.+++++|+
T Consensus        74 ------------------------------------~~i~~Ll~~Gadin---~~d~~~g~TpLh~A~~~g~~~iv~~Ll  114 (166)
T PHA02743         74 ------------------------------------MKIELLVNMGADIN---ARELGTGNTLLHIAASTKNYELAEWLC  114 (166)
T ss_pred             ------------------------------------HHHHHHHHcCCCCC---CCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence                                                23567778899998   666 58999999999999999999999


Q ss_pred             H-hCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          228 A-MGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       228 ~-~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                      + .|++++.+|..|+||||+|+..++.+++++|+++++...
T Consensus       115 ~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743        115 RQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             hccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5 799999999999999999999999999999999887643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=2.2e-21  Score=183.68  Aligned_cols=200  Identities=28%  Similarity=0.384  Sum_probs=155.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHH
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC  133 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~i  133 (420)
                      .+.-|+..|..+-|..|+..|+++|..|.+|.|+||.++.-.+.+||++|+++|+++|..|. .|+||||.|+..||..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccccHHH
Confidence            34567888999999999999999999999999999999999999999999999999999997 99999999999999999


Q ss_pred             HHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH----------HHHHhcC----C-HHHHHHHHHcCCCcc
Q 014696          134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL----------LHLTLNG----H-VESVQLLLDLGASVS  198 (420)
Q Consensus       134 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~aa~~g----~-~~~v~~Ll~~ga~~~  198 (420)
                      +++|+.+++......        .......+..........+          +.+++.-    . .++-++ +..|.+.+
T Consensus       122 ~~~li~~gA~~~avN--------sdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~-l~~G~~~d  192 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVN--------SDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQW-LNAGAELD  192 (527)
T ss_pred             HHHHHHhhhhhhhcc--------CCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHH-Hhcccccc
Confidence            999998765322110        0000011111111111111          1111111    1 122333 34788777


Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCc
Q 014696          199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGR  266 (420)
Q Consensus       199 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~  266 (420)
                         ..+..|.|.||.|+.+|..++.++|+++|.+++.+|.+||||||.|+.||+.++.++|.++++.-
T Consensus       193 ---~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  193 ---ARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM  257 (527)
T ss_pred             ---ccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence               45556999999999999999999999999999999999999999999999999999999998873

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.3e-21  Score=177.44  Aligned_cols=116  Identities=21%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccC--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCc-cCCCCCHHHHHHHc
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYST--FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLR-NYRGQTALMQACQH   94 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~--~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~-d~~g~TpL~~A~~~   94 (420)
                      ++|+.|++.|+.++++.|+++|++++....  +..|.||||+|+..|+.+++++|+++|+++|.+ +..|.||||+|+..
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~  114 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH  114 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc
Confidence            456666666666666666666666654321  234566666666666666666666666666664 34566666666666


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI  134 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv  134 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..++.+++
T Consensus       115 ~~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        115 GCLKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLA  153 (300)
T ss_pred             CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHH
Confidence            666666666666666666664 666666666666655544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=5e-21  Score=177.02  Aligned_cols=149  Identities=18%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCcc----CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHH
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRN----YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d----~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      .++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++|++++..++..|.||||+|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            467888888899999999999999999874    5899999999999999999999999999998754479999999998


Q ss_pred             cCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCC
Q 014696          128 NGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG  207 (420)
Q Consensus       128 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g  207 (420)
                      .|+.+++++|+                                                     ++|++++   .++..|
T Consensus       114 ~~~~eivklLL-----------------------------------------------------~~GAdin---~kd~~G  137 (300)
T PHA02884        114 HGCLKCLEILL-----------------------------------------------------SYGADIN---IQTNDM  137 (300)
T ss_pred             cCCHHHHHHHH-----------------------------------------------------HCCCCCC---CCCCCC
Confidence            88877665555                                                     6788888   678899


Q ss_pred             ccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       208 ~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      .||||+|++.++.+++..+.  |..   .+..+.+|++++   ++.+++++|..+..
T Consensus       138 ~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        138 VTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             CCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            99999999999999886665  322   456677888875   46889999887765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=7e-21  Score=161.63  Aligned_cols=129  Identities=22%  Similarity=0.207  Sum_probs=82.1

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCC--C-----CCCccCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCCccccCCC
Q 014696           49 GVRNSPLHYSAAQGHHEIVSLLIESGV--D-----INLRNYRGQTALMQACQHGHW---EVVLTLILYKANIHRADYLNG  118 (420)
Q Consensus        49 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~--~-----v~~~d~~g~TpL~~A~~~g~~---~iv~~Ll~~ga~~~~~~~~~g  118 (420)
                      ..|.||||+|+..|+.  +.++...+.  +     ++.+|..|+||||+|+..|+.   +++++|+++|++++.+++..|
T Consensus        15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            3467777777777763  333322221  1     234566777777777777765   356777777777777664467


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcc
Q 014696          119 GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVS  198 (420)
Q Consensus       119 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~  198 (420)
                      .||||+|+..|+.+++++|+.+                                                    .|++++
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~----------------------------------------------------~g~d~n  120 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQ----------------------------------------------------PGVNME  120 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhC----------------------------------------------------CCCCCc
Confidence            7777777777666665555521                                                    245555


Q ss_pred             cccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcc
Q 014696          199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT  234 (420)
Q Consensus       199 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~  234 (420)
                         ..+..|.||||+|+..|+.+++++|+++|++.+
T Consensus       121 ---~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        121 ---ILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ---cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               556677777777777777777777777776653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.8e-20  Score=159.06  Aligned_cols=133  Identities=22%  Similarity=0.284  Sum_probs=108.3

Q ss_pred             CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCC--C-----CCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhH
Q 014696           77 INLRNYRGQTALMQACQHGHWEVVLTLILYKA--N-----IHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAW  149 (420)
Q Consensus        77 v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--~-----~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~  149 (420)
                      .+.+|..|.||||+|++.|+.  ++++...+.  +     +...+. .|.||||+|+..|+.+.+               
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~---------------   71 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQ---------------   71 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHH---------------
Confidence            456788899999999999983  444433322  2     122344 899999999988876532               


Q ss_pred             HHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccC-CCCccHHHHHHHcCCHHHHHHHHH
Q 014696          150 NRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVS-GAGSTSLHYAACGGNAQCCQILIA  228 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~-~~g~TpLh~Aa~~g~~~iv~~Ll~  228 (420)
                                                         +++++|+++|++++   .++ ..|.||||+|+..|+.+++++|++
T Consensus        72 -----------------------------------e~v~~Ll~~gadin---~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~  113 (154)
T PHA02736         72 -----------------------------------EKLKLLMEWGADIN---GKERVFGNTPLHIAVYTQNYELATWLCN  113 (154)
T ss_pred             -----------------------------------HHHHHHHHcCCCcc---ccCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence                                               34567788899998   666 489999999999999999999998


Q ss_pred             h-CCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          229 M-GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       229 ~-gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      + |++++.+|..|+||||+|+..|+.+++++|+.+++.
T Consensus       114 ~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        114 QPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4 999999999999999999999999999999998765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.81  E-value=2.1e-20  Score=188.07  Aligned_cols=261  Identities=23%  Similarity=0.253  Sum_probs=211.2

Q ss_pred             cCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCc-cCCCCCHHHH
Q 014696           12 GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLR-NYRGQTALMQ   90 (420)
Q Consensus        12 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~-d~~g~TpL~~   90 (420)
                      .-++-.++|..|+..|+.|+|+.|+..|+.+...+..+  -+||.+|+..||..+|+.|+.+.++++.+ |+.+.|+|.+
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkg--f~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKG--FVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhccccccccccc--chhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            34456689999999999999999999999888766554  79999999999999999999999999875 6779999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc
Q 014696           91 ACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF  170 (420)
Q Consensus        91 A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (420)
                      |+..|+.++|++||..|++-..++ ...+|||.+|...|..+||..|+..|......                  .....
T Consensus       831 acsggr~~vvelLl~~gankehrn-vsDytPlsla~Sggy~~iI~~llS~GseInSr------------------tgSkl  891 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANKEHRN-VSDYTPLSLARSGGYTKIIHALLSSGSEINSR------------------TGSKL  891 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccccccc-hhhcCchhhhcCcchHHHHHHHhhcccccccc------------------ccccc
Confidence            999999999999999999877766 47899999999999999999999876443321                  22333


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHc
Q 014696          171 HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW  250 (420)
Q Consensus       171 ~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~  250 (420)
                      +..++..+..+||.+.++.|++.|-|+|..  ...+-+|+|-+|.-.|..++|.+||.+.+++..+-+.|.|||+-++..
T Consensus       892 gisPLmlatmngh~~at~~ll~~gsdiNaq--IeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  892 GISPLMLATMNGHQAATLSLLQPGSDINAQ--IETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             CcchhhhhhhccccHHHHHHhcccchhccc--cccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcC
Confidence            445666779999999999999999999974  334567899999999999999999999999998999999999999999


Q ss_pred             CchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCCCCC
Q 014696          251 HRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLST  299 (420)
Q Consensus       251 g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~~~~  299 (420)
                      |..++-++|+..+++.. ..+.+...   ..++.+..+.|++..+....
T Consensus       970 Gyvdvg~~li~~gad~n-asPvp~T~---dtalti~a~kGh~kfv~~ll 1014 (2131)
T KOG4369|consen  970 GYVDVGNLLIAAGADTN-ASPVPNTW---DTALTIPANKGHTKFVPKLL 1014 (2131)
T ss_pred             Cccccchhhhhcccccc-cCCCCCcC---CccceeecCCCchhhhHHhh
Confidence            99999999998887732 22221111   13345666777766655433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=4.7e-19  Score=144.22  Aligned_cols=119  Identities=34%  Similarity=0.399  Sum_probs=103.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      .-+.+|+..|.+..|+.||+..++... ..+..|.||||.|+.+||.+||+.|+..|++++.+...|+||||-|+..++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vN-trD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVN-TRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccccc-ccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            468899999999999999998876432 3445568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH-HHHHHH
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLAALNGHSR-CIRLLL  138 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~-iv~~Ll  138 (420)
                      +++-.||++|++++...+ ...||||+|+...+.. .+++|+
T Consensus       144 ~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHh
Confidence            999999999999999886 7899999999776554 344444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=5e-19  Score=144.08  Aligned_cols=142  Identities=26%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVD-INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~-v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      .+.+|+..+.+..|+.||+..++ +|.+|.+|.||||-|+.+|+.+||+.|+.+|++++.+.. .|+||||.|+...+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~-~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN-EGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc-cCccchhhhhcccchh
Confidence            46789999999999999987655 799999999999999999999999999999999999987 9999999999877766


Q ss_pred             HHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHH
Q 014696          133 CIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLH  212 (420)
Q Consensus       133 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh  212 (420)
                      ++-                                                     +||++|+|+|   .......||||
T Consensus       145 va~-----------------------------------------------------~LLqhgaDVn---A~t~g~ltpLh  168 (228)
T KOG0512|consen  145 VAG-----------------------------------------------------RLLQHGADVN---AQTKGLLTPLH  168 (228)
T ss_pred             HHH-----------------------------------------------------HHHhccCccc---ccccccchhhH
Confidence            554                                                     4557889999   66777899999


Q ss_pred             HHHHcCCH-HHHHHHHH-hCCCccccccCCCCHHHHHHHcCc
Q 014696          213 YAACGGNA-QCCQILIA-MGASLTAENANGWTPLMVARSWHR  252 (420)
Q Consensus       213 ~Aa~~g~~-~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~  252 (420)
                      +|+...+. ..+.+|+. .+.++..++..+.||+++|.+.+-
T Consensus       169 laa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  169 LAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99987765 45566654 488888899999999999987653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=8.8e-19  Score=134.18  Aligned_cols=89  Identities=39%  Similarity=0.555  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHH
Q 014696           20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEV   99 (420)
Q Consensus        20 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~i   99 (420)
                      ||.|++.|+.+++++|++.+.+++.      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            7899999999999999998877655      5799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCccc
Q 014696          100 VLTLILYKANIHRAD  114 (420)
Q Consensus       100 v~~Ll~~ga~~~~~~  114 (420)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-19  Score=183.04  Aligned_cols=285  Identities=20%  Similarity=0.186  Sum_probs=208.3

Q ss_pred             cccccCcccCC--CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q 014696            4 LSIVGNSFGCS--ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN   81 (420)
Q Consensus         4 l~~~g~~~~~~--~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d   81 (420)
                      |.-.|.+...+  .+-.+|..|+-.||..+|+.|+++.+++....+. .+.|+|.+|+..|..++|++||..|++-..++
T Consensus       776 lv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr-tkdt~lSlacsggr~~vvelLl~~gankehrn  854 (2131)
T KOG4369|consen  776 LVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR-TKDTMLSLACSGGRTRVVELLLNAGANKEHRN  854 (2131)
T ss_pred             HHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc-ccCceEEEecCCCcchHHHHHHHhhccccccc
Confidence            34445555433  5668899999999999999999999888776553 45899999999999999999999999888888


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc-CCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh------h
Q 014696           82 YRGQTALMQACQHGHWEVVLTLILYKANIHRADY-LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR------K  154 (420)
Q Consensus        82 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~------~  154 (420)
                      -...|||.+|...|..++|..|+.+|+.++.+.. ..|-+||++|..+||.+.++.|++.+.+..........      .
T Consensus       855 vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  855 VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            8889999999999999999999999988887643 36888999999999999999999876654332222111      0


Q ss_pred             hccCCCCchh-------ccc-ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHH
Q 014696          155 KSNKTGSILE-------FDE-RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL  226 (420)
Q Consensus       155 ~~~~~~~~~~-------~~~-~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L  226 (420)
                      ..+.......       ... ...+.++++.+|..|.+|+-.+||..|+|+|.. ..-....|+|-+++..||...|..|
T Consensus       935 fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas-Pvp~T~dtalti~a~kGh~kfv~~l 1013 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS-PVPNTWDTALTIPANKGHTKFVPKL 1013 (2131)
T ss_pred             ccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC-CCCCcCCccceeecCCCchhhhHHh
Confidence            1111111000       011 122345567779999999999999999999865 3344567888888888888888888


Q ss_pred             HHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCC
Q 014696          227 IAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDS  296 (420)
Q Consensus       227 l~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~  296 (420)
                      +...|.+..+|++|.|+|.+|+..|+...+.+|+++.++...  .+....++.|.++    +.|+-.++.
T Consensus      1014 ln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~--qdnr~~S~~maaf----RKgh~~iVk 1077 (2131)
T KOG4369|consen 1014 LNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ--QDNRTNSRTMAAF----RKGHFAIVK 1077 (2131)
T ss_pred             hCCccceecccCCCCcccchhccCCccccchHHhhcccChhh--hhcccccccHHHH----Hhchhheec
Confidence            888888888888888888888888888888888887766322  2444444555433    344444444

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-17  Score=165.81  Aligned_cols=208  Identities=23%  Similarity=0.267  Sum_probs=170.5

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcC---------CCCCCccCCCCCHHHHHHHc---CcHHHHHHHHHcCC----CCCcccc
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESG---------VDINLRNYRGQTALMQACQH---GHWEVVLTLILYKA----NIHRADY  115 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g---------~~v~~~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga----~~~~~~~  115 (420)
                      +.++..|...+..+.+..|+..+         .+++.+..-|.|.||.|..+   ++.++++.|++.-.    ++...+.
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            36788888889988888877654         56778888899999999873   45689999998643    3344455


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCC--Cchhcc-cccchhhHHHHHHhcCCHHHHHHHHH
Q 014696          116 LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG--SILEFD-ERYFHLEVLLHLTLNGHVESVQLLLD  192 (420)
Q Consensus       116 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~aa~~g~~~~v~~Ll~  192 (420)
                      ..|+||||+|+.+.+.++|++|++.+++.................  ..-++. .-+++..++-.||-.++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            689999999999999999999999998887776665543322211  111111 23456677778899999999999999


Q ss_pred             cCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC--ccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          193 LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS--LTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       193 ~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad--~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      +|||++   .+|..|+|.||.-+..-..++..+++++|++  ...+|..|.|||.+|++.|+.++.+.+++.
T Consensus       262 ~gAd~~---aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPN---AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCC---ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999   8899999999999999999999999999999  888999999999999999999999999988

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=5.8e-18  Score=148.54  Aligned_cols=115  Identities=30%  Similarity=0.443  Sum_probs=89.2

Q ss_pred             HHHHHcCCHHHHHHHHHh-CCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHH
Q 014696           21 VSAARDGDLQEAKALLEY-NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEV   99 (420)
Q Consensus        21 ~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~i   99 (420)
                      +.-++.||.-.|+..|+. ..+.+.-++  .|-+|||+|++.||..+|+.|+.+|+.+|..|....||||+|+.+||-++
T Consensus         5 f~wcregna~qvrlwld~tehdln~gdd--hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHDLNVGDD--HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccccccccc--cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            344566665555555543 333443333  35789999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHH
Q 014696          100 VLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL  138 (420)
Q Consensus       100 v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  138 (420)
                      |+.|+++.+++|..+. .|.||||||+.-|...+.+-|+
T Consensus        83 vqkll~~kadvnavne-hgntplhyacfwgydqiaedli  120 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNE-HGNTPLHYACFWGYDQIAEDLI  120 (448)
T ss_pred             HHHHHHHhcccchhhc-cCCCchhhhhhhcHHHHHHHHH
Confidence            9999999999998886 8999999998887776665555

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=2.2e-16  Score=128.13  Aligned_cols=55  Identities=33%  Similarity=0.500  Sum_probs=31.9

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHh
Q 014696          205 GAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL  259 (420)
Q Consensus       205 ~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL  259 (420)
                      ..|.||+|+|++.++.+++++|+++|.+++..+..|.||+++|...++.+++++|
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            3455555555555555555555555555555555556666666655555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=5.5e-17  Score=124.15  Aligned_cols=85  Identities=45%  Similarity=0.624  Sum_probs=78.8

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHH
Q 014696           55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI  134 (420)
Q Consensus        55 Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv  134 (420)
                      ||+|+++|+.+++++|++.+.+++.    |.||||+|+.+|+.+++++|+++|++++..+. .|+||||+|+.+|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDK-NGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCC-CCCCHHHHHHHcCCHHHH
Confidence            7999999999999999999988887    88999999999999999999999999999985 999999999999999999


Q ss_pred             HHHHHhcCCC
Q 014696          135 RLLLADYIPS  144 (420)
Q Consensus       135 ~~Ll~~~~~~  144 (420)
                      ++|++++...
T Consensus        76 ~~Ll~~g~~~   85 (89)
T PF12796_consen   76 KLLLEHGADV   85 (89)
T ss_dssp             HHHHHTTT-T
T ss_pred             HHHHHcCCCC
Confidence            9999886543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-17  Score=144.78  Aligned_cols=138  Identities=32%  Similarity=0.432  Sum_probs=114.7

Q ss_pred             HHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhh
Q 014696           69 LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNA  148 (420)
Q Consensus        69 ~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  148 (420)
                      ||=+..-|.|.-|..|.+|||+|++.|+..+|+.|+..|+.+|..+- ...||||+|+.+||-++|+.|+          
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm-gddtplhlaaahghrdivqkll----------   87 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM-GDDTPLHLAAAHGHRDIVQKLL----------   87 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC-CCCcchhhhhhcccHHHHHHHH----------
Confidence            33344668899999999999999999999999999999999998874 6789999999988887776666          


Q ss_pred             HHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHH
Q 014696          149 WNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA  228 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~  228 (420)
                                                                 +..+|+|   ..+..|.||||||+-.|...+.+-|+.
T Consensus        88 -------------------------------------------~~kadvn---avnehgntplhyacfwgydqiaedli~  121 (448)
T KOG0195|consen   88 -------------------------------------------SRKADVN---AVNEHGNTPLHYACFWGYDQIAEDLIS  121 (448)
T ss_pred             -------------------------------------------HHhcccc---hhhccCCCchhhhhhhcHHHHHHHHHh
Confidence                                                       4567888   778899999999999999999999999


Q ss_pred             hCCCccccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          229 MGASLTAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       229 ~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      .||.++..|++|.|||..|----...+.++-.+.+
T Consensus       122 ~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~g  156 (448)
T KOG0195|consen  122 CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHG  156 (448)
T ss_pred             ccceeeecccCCCCchhhhchHHHHHHHHHHHHhC
Confidence            99999999999999999885433333333333333

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=2.4e-16  Score=114.91  Aligned_cols=104  Identities=23%  Similarity=0.341  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ..+.+++++|.++.|+..+..+-+++...   .|++|||||+..|..+++++|+..|++++.+|++|-|||.-|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~---ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY---GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh---CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            56899999999999999999886555433   469999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHH
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLA  125 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A  125 (420)
                      ++|++|++.|++-..... .|.+.+..+
T Consensus        81 ~cVklLL~~GAdrt~~~P-dG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAP-DGTALIEAT  107 (117)
T ss_pred             HHHHHHHHcCcccceeCC-CchhHHhhc
Confidence            999999999999877765 677665443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=5.2e-16  Score=154.33  Aligned_cols=188  Identities=27%  Similarity=0.307  Sum_probs=155.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-------CcccccCCCCCCcHHHHHHH---cCcHHHHHHHHHcCCC-CC----CccC
Q 014696           18 ERLVSAARDGDLQEAKALLEYNP-------RLVRYSTFGVRNSPLHYSAA---QGHHEIVSLLIESGVD-IN----LRNY   82 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~-------~~~~~~~~~~g~t~Lh~Aa~---~g~~~iv~~Ll~~g~~-v~----~~d~   82 (420)
                      ++++.|...|.++....|+....       +.........|.|.||.|..   .++.++++.|++.-.. +|    ...+
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67888999999998888887652       33444445578999999998   4667999999985211 12    1246


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc----------------------CCCChHHHHHHHcCCHHHHHHHHHh
Q 014696           83 RGQTALMQACQHGHWEVVLTLILYKANIHRADY----------------------LNGGTALHLAALNGHSRCIRLLLAD  140 (420)
Q Consensus        83 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~----------------------~~g~tpL~~A~~~g~~~iv~~Ll~~  140 (420)
                      .|+||||+|+.+.+.++|++|++.|||++.+-.                      ..|..||.+||--++.+|+++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            799999999999999999999999999885321                      2588999999999999999999987


Q ss_pred             cCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHH-HhcCCHHHHHHHHHcCCC--cccccccCCCCccHHHHHHHc
Q 014696          141 YIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGAS--VSEYLSVSGAGSTSLHYAACG  217 (420)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a-a~~g~~~~v~~Ll~~ga~--~~~~~~~~~~g~TpLh~Aa~~  217 (420)
                      +                     .+.+.++..+.+.+|+ +..-..++..+++++|++  ..   ..+..|-|||.+|++.
T Consensus       263 g---------------------Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~---v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  263 G---------------------ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEH---VRNNQGLTPLTLAAKL  318 (782)
T ss_pred             C---------------------CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccCCCChHHHHHHh
Confidence            4                     4455677788999999 888899999999999999  44   7788999999999999


Q ss_pred             CCHHHHHHHHHh
Q 014696          218 GNAQCCQILIAM  229 (420)
Q Consensus       218 g~~~iv~~Ll~~  229 (420)
                      |..++.+.+++.
T Consensus       319 Gk~emf~~ile~  330 (782)
T KOG3676|consen  319 GKKEMFQHILER  330 (782)
T ss_pred             hhHHHHHHHHHh
Confidence            999999999997

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.6e-15  Score=123.06  Aligned_cols=121  Identities=40%  Similarity=0.557  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++|+.|+..|+.+++++|++.+...+.  .+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~--~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            456899999999999999999999987643  334568999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL  138 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  138 (420)
                      ++.+++++|++.+.+++..+. .|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999888885 8999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=3.9e-14  Score=127.38  Aligned_cols=88  Identities=39%  Similarity=0.569  Sum_probs=53.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc-----HHHHHHHHHcCC--CCCccccCCCChHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH-----WEVVLTLILYKA--NIHRADYLNGGTALH  123 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~-----~~iv~~Ll~~ga--~~~~~~~~~g~tpL~  123 (420)
                      +.+++|.++..+..+++++|++.|++++.+|..|.||||+|+..++     .++++.|++.|+  +.....+..|.||||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~  152 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH  152 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence            3566666666666666666666666666666666666666666666     666666666666  333332236666666


Q ss_pred             HHHHcCCHHHHHHHH
Q 014696          124 LAALNGHSRCIRLLL  138 (420)
Q Consensus       124 ~A~~~g~~~iv~~Ll  138 (420)
                      +|+..|+.+++++|+
T Consensus       153 ~A~~~~~~~~~~~ll  167 (235)
T COG0666         153 WAALNGDADIVELLL  167 (235)
T ss_pred             HHHHcCchHHHHHHH
Confidence            666665555544444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=1.2e-13  Score=124.24  Aligned_cols=137  Identities=34%  Similarity=0.489  Sum_probs=118.7

Q ss_pred             CCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhh
Q 014696           76 DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKK  155 (420)
Q Consensus        76 ~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  155 (420)
                      .....+..+.++++.|+..+..+++++++..|++++..+. .|.||||+|+..++.                        
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~------------------------  119 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNP------------------------  119 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCc------------------------
Confidence            3455667789999999999999999999999999988775 999999999999884                        


Q ss_pred             ccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCC--CcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCc
Q 014696          156 SNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGA--SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL  233 (420)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga--~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~  233 (420)
                                              ..++.+++++|++.|+  +...  ..+..|.||||+|+..|+.+++++|++.|+++
T Consensus       120 ------------------------~~~~~~~~~~ll~~g~~~~~~~--~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~  173 (235)
T COG0666         120 ------------------------PEGNIEVAKLLLEAGADLDVNN--LRDEDGNTPLHWAALNGDADIVELLLEAGADP  173 (235)
T ss_pred             ------------------------ccchHHHHHHHHHcCCCCCCcc--ccCCCCCchhHHHHHcCchHHHHHHHhcCCCC
Confidence                                    1244555666666777  3332  56889999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          234 TAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       234 ~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      +.++..|.|+++.|...++.++++.+...+
T Consensus       174 ~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         174 NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999875

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=4.6e-14  Score=103.06  Aligned_cols=88  Identities=28%  Similarity=0.406  Sum_probs=69.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      --+.|++++|.++-|+..+..|.++|..- .|+||||||+..|+.+++++|+..|++++.+|+ .|-|||..|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK-ygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDK-YGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccc-cCCcHHHHHHHHhhHH
Confidence            34667888888888888888887777653 788888888888888888888888888888886 8888888888888877


Q ss_pred             HHHHHHHhcC
Q 014696          133 CIRLLLADYI  142 (420)
Q Consensus       133 iv~~Ll~~~~  142 (420)
                      +|++|+++|+
T Consensus        82 cVklLL~~GA   91 (117)
T KOG4214|consen   82 CVKLLLQNGA   91 (117)
T ss_pred             HHHHHHHcCc
Confidence            7777776543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.6e-14  Score=98.07  Aligned_cols=54  Identities=41%  Similarity=0.684  Sum_probs=42.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI  104 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll  104 (420)
                      |+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578899999999999999999888888888888999999999999988888886

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.50  E-value=1.8e-13  Score=120.51  Aligned_cols=122  Identities=29%  Similarity=0.313  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL-RNYRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~-~d~~g~TpL~~A~~   93 (420)
                      +...+|+.++..|+.+.+..||+.-..++..+  ..|.|+|..|+.+|+.++|++|++.|+|+|. ++..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D--~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRD--PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccC--CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            45579999999999999999999865555544  4569999999999999999999999999986 45678999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHH
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA  139 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  139 (420)
                      .|+.++.++|++.|+.....+. -|+|+-.+|+.-|+.++|..+-.
T Consensus        89 SGn~dvcrllldaGa~~~~vNs-vgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNS-VGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhccCccccccc-hhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999998886 89999999999999999988753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=1.8e-14  Score=99.42  Aligned_cols=55  Identities=38%  Similarity=0.577  Sum_probs=33.2

Q ss_pred             HHHcC-CCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          190 LLDLG-ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       190 Ll~~g-a~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      ||++| ++++   .+|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n---~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVN---AQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT------TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCc---CcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57777 7777   7899999999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1e-13  Score=95.06  Aligned_cols=54  Identities=33%  Similarity=0.525  Sum_probs=46.4

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhh
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS  260 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~  260 (420)
                      |+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=2.3e-13  Score=128.63  Aligned_cols=119  Identities=24%  Similarity=0.278  Sum_probs=103.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHH
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE   98 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~   98 (420)
                      -|..|+..|.+++|+..+..-.+....++  .|-|+||-|+-.||.+||++|++.|++||..|.+||||||.|+..++..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNd--EGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPND--EGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCc--cchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            47889999999999999987766655444  4589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCccccCCCChHHHHH--HHcCCHHHHHHHHH
Q 014696           99 VVLTLILYKANIHRADYLNGGTALHLA--ALNGHSRCIRLLLA  139 (420)
Q Consensus        99 iv~~Ll~~ga~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~  139 (420)
                      +++.|++.|+-+....-.++.|+..-.  ...|..+|.+||..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999998877766788887665  35688899999973

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.6e-14  Score=96.30  Aligned_cols=55  Identities=40%  Similarity=0.523  Sum_probs=23.7

Q ss_pred             HHHcC-CCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHH
Q 014696           70 LIESG-VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA  125 (420)
Q Consensus        70 Ll~~g-~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A  125 (420)
                      ||++| ++++.+|..|+||||+|+.+|+.++|++|++.|++++.++. .|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK-DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence            45555 66666677777777777777777777777766777766665 667777665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=6.3e-13  Score=117.10  Aligned_cols=87  Identities=28%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS  131 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~  131 (420)
                      .+||.-++.+|+.+-...||..--.+|.+|..|.|+|..|+..|+.++|++|++.|+|+|......++||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            46777777788877777777765567777777888888888888888888888777777766555566666666666555


Q ss_pred             HHHHHHH
Q 014696          132 RCIRLLL  138 (420)
Q Consensus       132 ~iv~~Ll  138 (420)
                      ++.++|+
T Consensus        93 dvcrlll   99 (396)
T KOG1710|consen   93 DVCRLLL   99 (396)
T ss_pred             hHHHHHH
Confidence            5444444

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=7.2e-13  Score=137.44  Aligned_cols=86  Identities=36%  Similarity=0.503  Sum_probs=66.0

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHH
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC  133 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~i  133 (420)
                      .|+.|+..|+.+.+++|++.|+++|.+|..|+||||+|+.+|+.+++++|+++|++++..+. .|.||||+|+..|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-DGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHHH
Confidence            36777777888888877777777777777778888888888888888888877777777775 77778877777777777


Q ss_pred             HHHHHHh
Q 014696          134 IRLLLAD  140 (420)
Q Consensus       134 v~~Ll~~  140 (420)
                      +++|+++
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            7777643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=6.1e-13  Score=137.95  Aligned_cols=106  Identities=29%  Similarity=0.323  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ..|+.|+..|+.+.++.|++.+++++..+.  .|+||||+|+.+|+.+++++|+++|++++.+|..|.||||+|+.+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~--~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDY--DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            358999999999999999999998876544  569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCCccccCCCChHHHHHH
Q 014696           98 EVVLTLILY-------KANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        98 ~iv~~Ll~~-------ga~~~~~~~~~g~tpL~~A~  126 (420)
                      +++++|+++       |++.+..+. .|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~-~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSF-TGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCcccc-CCCCccchhh
Confidence            999999998       888776664 6777765543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=2.3e-12  Score=122.07  Aligned_cols=91  Identities=30%  Similarity=0.482  Sum_probs=84.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCch
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRT  253 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  253 (420)
                      .+|.|+..|.+++|+..+..-.|+.   ..+..|.|+||.|+..||.+||++|++.|+++|+.|.+||||||.|+.-++.
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpS---qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPS---QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCC---CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            3566799999999999998877877   6678999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhCCCCcc
Q 014696          254 GLEDILSTQPEGRL  267 (420)
Q Consensus       254 ~i~~lL~~~~~~~~  267 (420)
                      .+.+.|.+.++...
T Consensus       630 ~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  630 PMCKQLVESGAAVF  643 (752)
T ss_pred             HHHHHHHhccceEE
Confidence            99999999988643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.95  E-value=3.5e-09  Score=101.50  Aligned_cols=121  Identities=24%  Similarity=0.290  Sum_probs=109.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--CCCccCCCCCHHHHHHH
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD--INLRNYRGQTALMQACQ   93 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~--v~~~d~~g~TpL~~A~~   93 (420)
                      -++.+..|+..+|+-.++.....+.++..+..+.  .|.||||+..|+-++|+|+|++|..  ++..|..|.|+||.|+-
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~--~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDH--CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcch--hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            4567999999999999988888888887766655  7999999999999999999999854  57778999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHH
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA  139 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  139 (420)
                      .++-.+.++|++.|+.+...|. .|.||-..|-..|+.+...||-.
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hcchHHHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhh
Confidence            9999999999999999999887 99999999999999999999864

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.93  E-value=1.1e-09  Score=103.04  Aligned_cols=90  Identities=28%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccccCCCChHHHHHHHc
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY-KANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .+.-.+++|++.|++..++.+.-.|.|++.+|++.+|+||.|+..|+.+++++|++. +.+++.+|. +|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc-cCCCcchHhHhc
Confidence            345689999999999999999999999999999999999999999999999999986 788888886 999999999999


Q ss_pred             CCHHHHHHHHHh
Q 014696          129 GHSRCIRLLLAD  140 (420)
Q Consensus       129 g~~~iv~~Ll~~  140 (420)
                      +|.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            999999999864

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=4.1e-09  Score=99.57  Aligned_cols=86  Identities=31%  Similarity=0.403  Sum_probs=77.6

Q ss_pred             HHHHH-HhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCc
Q 014696          174 VLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHR  252 (420)
Q Consensus       174 ~~l~a-a~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  252 (420)
                      --+|+ ++.|+.+..-.||..||++|..  -...|.||||.|++.|+.--+++|+=+|||++..|.+|.||+.||...||
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~--hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFF--HPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCC--CcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence            35677 9999999999999999999974  34579999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 014696          253 TGLEDILST  261 (420)
Q Consensus       253 ~~i~~lL~~  261 (420)
                      .++.+-|.+
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            888776654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.88  E-value=1.5e-09  Score=108.22  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCC-CCCHHHHHHHcCcHHHHHHHHH
Q 014696           27 GDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR-GQTALMQACQHGHWEVVLTLIL  105 (420)
Q Consensus        27 g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~  105 (420)
                      |...-++.++++...-.....+..|+|+||+|+..|..++++||+++|+|++.+|+. |+||||-|+.+|++|++-+||.
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            333335555554322224445567899999999999999999999999999999975 9999999999999999999999


Q ss_pred             cCCCCCccccCCCChHHHHHHH
Q 014696          106 YKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus       106 ~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      +|+.....|. .|.+||.+-.+
T Consensus       108 ~g~SL~i~Dk-eglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRSLRIKDK-EGLSPLQFLSR  128 (1267)
T ss_pred             cCCceEEecc-cCCCHHHHHhh
Confidence            9999999997 99999998876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.88  E-value=2.1e-09  Score=101.03  Aligned_cols=90  Identities=29%  Similarity=0.319  Sum_probs=82.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCc
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      -.+++|++.||+..++.+.-.+.++...+.+.  +|+||.||..|+++++++|++. +++++.+|.+|+|||.-|...+|
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~--RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDD--RTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhccccccccccc--chhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            47999999999999999999998887766555  8999999999999999999986 89999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 014696           97 WEVVLTLILYKAN  109 (420)
Q Consensus        97 ~~iv~~Ll~~ga~  109 (420)
                      .+++++|-+.-..
T Consensus       586 ~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  586 KEVVKLLEEAQYP  598 (622)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.86  E-value=1e-08  Score=96.96  Aligned_cols=88  Identities=28%  Similarity=0.352  Sum_probs=68.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      +..||..++.|+++..-.||..|++.|.+..+. |.||||.|++.|+.--+++|+-.|+|++..|..|.||+.+|-..||
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence            356888888888888888888888777665543 6788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHH
Q 014696           97 WEVVLTLIL  105 (420)
Q Consensus        97 ~~iv~~Ll~  105 (420)
                      -++.+.|++
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            777776664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=4.2e-09  Score=62.08  Aligned_cols=30  Identities=40%  Similarity=0.624  Sum_probs=27.9

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHhCCCccc
Q 014696          206 AGSTSLHYAACGGNAQCCQILIAMGASLTA  235 (420)
Q Consensus       206 ~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~  235 (420)
                      +|+||||+|++.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999873

>PF13606 Ank_3: Ankyrin repeat

Probab=98.81  E-value=6e-09  Score=61.39  Aligned_cols=28  Identities=50%  Similarity=0.862  Sum_probs=18.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDIN   78 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~   78 (420)
                      |+||||+|+..|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4566666666666666666666666665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.80  E-value=7.8e-09  Score=62.71  Aligned_cols=33  Identities=36%  Similarity=0.648  Sum_probs=30.9

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 014696          206 AGSTSLHYAACGGNAQCCQILIAMGASLTAENA  238 (420)
Q Consensus       206 ~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~  238 (420)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.78  E-value=1.9e-08  Score=96.77  Aligned_cols=91  Identities=34%  Similarity=0.402  Sum_probs=42.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRL--VRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      ..|..|+...|+..+-.||.++...  +....++.|+|+||+|+..|++.+.++|+=+|+|+-.+|.+|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            3444455555555555555444322  22223333445555555555555555555445555555555555555555555


Q ss_pred             cHHHHHHHHHcCC
Q 014696           96 HWEVVLTLILYKA  108 (420)
Q Consensus        96 ~~~iv~~Ll~~ga  108 (420)
                      ..+++..|+++|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            5555555554443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.75  E-value=1.4e-08  Score=61.61  Aligned_cols=31  Identities=55%  Similarity=0.998  Sum_probs=21.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRN   81 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d   81 (420)
                      |+||||+|+.+|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4677777777777777777777777776665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=4.9e-08  Score=93.76  Aligned_cols=122  Identities=27%  Similarity=0.353  Sum_probs=95.9

Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc
Q 014696           89 MQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER  168 (420)
Q Consensus        89 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                      ..|+..+.+--++.+...|.++..++. +..|.||+|+..|+-++|+||++++.+                         
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p~-------------------------  924 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPS-------------------------  924 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCCH-------------------------
Confidence            445555554445555566777777775 778888888888888888888876321                         


Q ss_pred             cchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       169 ~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                                      +    ||+         ..+..|.|+||-|+..++-.++++|++.||.+...|..|.||-.-|-
T Consensus       925 ----------------e----lld---------~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq  975 (1004)
T KOG0782|consen  925 ----------------E----LLD---------MADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ  975 (1004)
T ss_pred             ----------------H----HHH---------HHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH
Confidence                            1    111         33457999999999999999999999999999999999999999999


Q ss_pred             HcCchhHHHHhhhCCCC
Q 014696          249 SWHRTGLEDILSTQPEG  265 (420)
Q Consensus       249 ~~g~~~i~~lL~~~~~~  265 (420)
                      +.|..++..+|......
T Consensus       976 qa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  976 QAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             hcCCchHHHHHhhhhch
Confidence            99999999999765443

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.71  E-value=1.2e-08  Score=68.39  Aligned_cols=47  Identities=36%  Similarity=0.810  Sum_probs=39.4

Q ss_pred             CCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      +.|.+|++....++..||||. +|..|+..+...            ...||+||++|.++
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKR------------KKKCPICRQPIESV   50 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT------------TSBBTTTTBB-SEE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhccc------------CCCCCcCChhhcCC
Confidence            579999999999999999999 999999988762            34599999999864

...

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=6.2e-08  Score=93.38  Aligned_cols=98  Identities=29%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             hhHHHHHHhcCCHHHHHHHHHcCCCcccc-cccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHc
Q 014696          172 LEVLLHLTLNGHVESVQLLLDLGASVSEY-LSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW  250 (420)
Q Consensus       172 ~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~-~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~  250 (420)
                      +.-++.|....++..+-+||.+|-..... ...+++|+|+||+|++.|++.+.++|+=+|+|+..+|.+|+|+|.||.+.
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence            44577788888899999999998644322 13456789999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHhhhCCCCcccc
Q 014696          251 HRTGLEDILSTQPEGRLEV  269 (420)
Q Consensus       251 g~~~i~~lL~~~~~~~~~~  269 (420)
                      |..+++..|++++-.+.-.
T Consensus       705 ~sqec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDECG  723 (749)
T ss_pred             ccHHHHHHHHHcCCCcccc
Confidence            9999999999998764433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.67  E-value=1.9e-08  Score=100.65  Aligned_cols=65  Identities=29%  Similarity=0.326  Sum_probs=62.1

Q ss_pred             CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhc
Q 014696           77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADY  141 (420)
Q Consensus        77 v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  141 (420)
                      .|+.|..|+|+||+|+..+..++++||+++|++++.+|...|+||||-|+..|+++++-+||.+|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC
Confidence            68899999999999999999999999999999999999999999999999999999999999764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=8.9e-08  Score=91.82  Aligned_cols=90  Identities=22%  Similarity=0.285  Sum_probs=71.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      .+||.++...+.+.+..++...........+..|+||||+|+..||.+.++.|+.+|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            35888888888888877666554444444445568999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHcC
Q 014696           98 EVVLTLILYK  107 (420)
Q Consensus        98 ~iv~~Ll~~g  107 (420)
                      +++..++.+.
T Consensus       102 q~i~~vlr~~  111 (560)
T KOG0522|consen  102 QIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHh
Confidence            8887777643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.59  E-value=2.4e-07  Score=93.80  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCC--cccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPR--LVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA   91 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A   91 (420)
                      +.++..+..|+..||.-.|+..++....  ++....+.-|+++|+.|+.+.+.+++++|++++..+       ..+|.+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            4667899999999999999999997655  777777888999999999999999999999996655       4599999


Q ss_pred             HHcCcHHHHHHHHHcCCCC---------CccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 014696           92 CQHGHWEVVLTLILYKANI---------HRADYLNGGTALHLAALNGHSRCIRLLLADYIP  143 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~ga~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  143 (420)
                      +..|..++|+.++.+....         +......+-|||.+||..++.||++.|+.++..
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            9999999999999874332         111223578999999999999999999987663

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=4.1e-07  Score=87.38  Aligned_cols=89  Identities=24%  Similarity=0.316  Sum_probs=78.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHH--cCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           53 SPLHYSAAQGHHEIVSLLIE--SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~--~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      -|||+++.....+-+..++.  .+..++.+|..|.||||+|+..|+.+.++.|+..|+++..+++ .|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~-~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN-EGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc-ccccHHHHHHHcCC
Confidence            35999999988877766443  3567899999999999999999999999999999999999987 99999999999999


Q ss_pred             HHHHHHHHHhcC
Q 014696          131 SRCIRLLLADYI  142 (420)
Q Consensus       131 ~~iv~~Ll~~~~  142 (420)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            999999987643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.50  E-value=2.6e-07  Score=93.59  Aligned_cols=128  Identities=23%  Similarity=0.234  Sum_probs=96.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHc----CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           53 SPLHYSAAQGHHEIVSLLIES----GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~----g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      --...|+.+|+...|+..++.    ..++|..|.-|+++|+.|+.+.+.+++++|+++....        ..+|.+|+..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~   98 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHH
Confidence            456689999999999988874    2567888999999999999999999999999877554        3589999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      |..++|++++.+.........                                           .+ +.+.  .....+.
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~-------------------------------------------~~-d~~~--~~ft~di  132 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLER-------------------------------------------SG-DANS--PHFTPDI  132 (822)
T ss_pred             HHHHHHHHHHhcccccchhcc-------------------------------------------cc-ccCc--ccCCCCc
Confidence            999999999976322110000                                           00 1110  2233578


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCcc
Q 014696          209 TSLHYAACGGNAQCCQILIAMGASLT  234 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~gad~~  234 (420)
                      |||++||..++.||++.|+++|+.+-
T Consensus       133 tPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  133 TPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             cHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999999999998764

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.32  E-value=6.6e-07  Score=93.11  Aligned_cols=109  Identities=24%  Similarity=0.276  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 014696           29 LQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA  108 (420)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  108 (420)
                      ...+..=+..+.+.+.......|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+...|+...+..|++.|+
T Consensus       634 ~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a  713 (785)
T KOG0521|consen  634 LPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGA  713 (785)
T ss_pred             hhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccc
Confidence            33333333444555554444557899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCChHHHHHHHcCCHHHHHHHH
Q 014696          109 NIHRADYLNGGTALHLAALNGHSRCIRLLL  138 (420)
Q Consensus       109 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  138 (420)
                      +.+..+. .|.+||++|....+.+++-++.
T Consensus       714 ~~~a~~~-~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  714 DPNAFDP-DGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cccccCc-cCcchhhHHhhhccccHHHHHh
Confidence            9999997 9999999998887777776665

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.9e-08  Score=61.86  Aligned_cols=50  Identities=32%  Similarity=0.648  Sum_probs=41.3

Q ss_pred             CCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      |+|.+|.+.+-.-+.--|||. +|-.|.+.+...           +.-.||+||++|..+.|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-----------~~g~CPiCRapi~dvIk   58 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-----------LHGCCPICRAPIKDVIK   58 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-----------cCCcCcchhhHHHHHHH
Confidence            899999999888888889999 999999888632           34469999988877655

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.24  E-value=2.8e-06  Score=71.18  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             CCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG-ASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       195 a~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      .++|   .+|..|+|+|+.|+..|+.+.|.+|+.+| +++...|..|.+++.+|-+.|..++++.|.++...
T Consensus         3 ~~in---~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNIN---ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCcc---chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4566   78889999999999999999999999999 99999999999999999999999999999987443

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=7.2e-07  Score=82.10  Aligned_cols=51  Identities=29%  Similarity=0.686  Sum_probs=43.6

Q ss_pred             CCCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      -..|+||+....+++..||+|. +|..|+..|=..            ...||+||++|.++.++
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q------------~n~CPICRqpi~~ll~i  341 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ------------TNNCPICRQPIEELLEI  341 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh------------hcCCCccccchHhhhee
Confidence            4579999999999999999999 999999888522            23499999999999765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.19  E-value=7e-06  Score=75.77  Aligned_cols=73  Identities=30%  Similarity=0.365  Sum_probs=56.6

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      -|.+|++.|+.+.|++|++.|.++|.+|.....||.+|+..||.++|++|+++|+--.. +...|..++ +++.+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r-dtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR-DTFDGDRCH-YGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc-cccCcchhh-hhhhh
Confidence            57788888888888888888888888888888888888888888888888888875443 334666554 44443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.16  E-value=1.4e-06  Score=90.73  Aligned_cols=81  Identities=28%  Similarity=0.382  Sum_probs=70.1

Q ss_pred             HhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHH
Q 014696          179 TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI  258 (420)
Q Consensus       179 a~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~l  258 (420)
                      +..+...++++|+++|+++|   ..+..|+||||.+...|+...+..|+++|++.++.+.+|++|+++|....+.+++-+
T Consensus       664 ~~~~~~~~~e~ll~~ga~vn---~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  664 VGTGDSGAVELLLQNGADVN---ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             hccchHHHHHHHHhcCCcch---hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHH
Confidence            55556666777788999999   788899999999999999999999999999999999999999999988877777666


Q ss_pred             hhhC
Q 014696          259 LSTQ  262 (420)
Q Consensus       259 L~~~  262 (420)
                      +.-.
T Consensus       741 ~~l~  744 (785)
T KOG0521|consen  741 LRLA  744 (785)
T ss_pred             Hhhh
Confidence            5443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.11  E-value=6.7e-06  Score=68.97  Aligned_cols=65  Identities=31%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             CCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 014696           75 VDINLRNYRGQTALMQACQHGHWEVVLTLILYK-ANIHRADYLNGGTALHLAALNGHSRCIRLLLAD  140 (420)
Q Consensus        75 ~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  140 (420)
                      .++|.+|..|+||||.|+..|..+.+.||+.+| +.+-..+. .|.+++.+|-+.|+.+++..|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~-ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE-SSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc-ccchHHHHHHhcChHHHHHHHHHH
Confidence            456666666666666666666666666666666 45555553 666666666666666666666653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.07  E-value=1.7e-05  Score=73.34  Aligned_cols=75  Identities=25%  Similarity=0.432  Sum_probs=63.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      ..|..|++.|+++.|++|++.|..+|..+.+.  .+||.+|+..||.++|++|+++|+--+.-...|...+ |++.+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD--~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLnd  112 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFD--SSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALND  112 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhccc--ccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhhH
Confidence            56999999999999999999998888777665  7999999999999999999999987776666777664 444443

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.9e-06  Score=76.52  Aligned_cols=47  Identities=28%  Similarity=0.695  Sum_probs=40.9

Q ss_pred             CCCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ...|.||+|.+..-++.+|||. .|.+|..                .+..||+||+.|++.+++
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk----------------rm~eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK----------------RMNECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcc----------------ccccCchHHHHHHHHHhh
Confidence            5679999999999999999998 8888882                334699999999999875

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.90  E-value=5.1e-05  Score=79.06  Aligned_cols=129  Identities=22%  Similarity=0.218  Sum_probs=86.8

Q ss_pred             CCCccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhh
Q 014696           77 INLRNYRGQTALMQACQHGHWEVVLTLILY-KANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKK  155 (420)
Q Consensus        77 v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  155 (420)
                      +......|+|-||+++..+..-+++.+++- |......+. .|.-.+|+++ .++.+..-+++                 
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hfca-~lg~ewA~ll~-----------------  627 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHFCA-ALGYEWAFLPI-----------------  627 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhHhh-hcCCceeEEEE-----------------
Confidence            344455667777777777666666666664 444444443 5555666633 33333332222                 


Q ss_pred             ccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcc-
Q 014696          156 SNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT-  234 (420)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~-  234 (420)
                                                         .-+|..++   ..|..|+||||+|+..|+..++..|++.|++.. 
T Consensus       628 -----------------------------------~~~~~ai~---i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  628 -----------------------------------SADGVAID---IRDRNGWTPLHWAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             -----------------------------------eecccccc---cccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence                                               12344455   678899999999999999999999998877643 


Q ss_pred             -----ccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          235 -----AENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       235 -----~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                           ..+-.|.|+-.+|..+|+..+.-+|.+.
T Consensus       670 ~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  670 VTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence                 3345699999999999999998888765

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=9.1e-06  Score=72.64  Aligned_cols=45  Identities=40%  Similarity=0.965  Sum_probs=39.0

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .-.|.+|++....-.+.||||.||-.|.+..|+...            .||+||...
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~------------eCPlCR~~~  283 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA------------ECPLCREKF  283 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc------------CCCcccccC
Confidence            356999999998889999999999999999997772            299999653

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.80  E-value=1.6e-05  Score=51.49  Aligned_cols=41  Identities=37%  Similarity=0.788  Sum_probs=31.7

Q ss_pred             CCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCc
Q 014696          302 DPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCR  354 (420)
Q Consensus       302 d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR  354 (420)
                      |.|.||++..   -.++..+|||.+|..|...+-....            .||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~------------~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN------------SCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS------------B-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC------------cCCccC
Confidence            5788998755   4667888999999999998875542            599998

...

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.80  E-value=3.8e-05  Score=79.97  Aligned_cols=91  Identities=22%  Similarity=0.088  Sum_probs=75.5

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHH-HHcCCCCCccccCCCChHHHHHH
Q 014696           49 GVRNSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTL-ILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        49 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~L-l~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      -.|+|.||+++..+..-+++.+++- |......|.+|+-.+|+++. ++.+.+-+| .-.|..++.+|. .|+||||||+
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~-~G~tpL~wAa  649 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDR-NGWTPLHWAA  649 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccC-CCCcccchHh
Confidence            3568999999999999999999985 77777888889999999554 444544444 457889999997 9999999999


Q ss_pred             HcCCHHHHHHHHHhc
Q 014696          127 LNGHSRCIRLLLADY  141 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~  141 (420)
                      ..|+..++..|++-+
T Consensus       650 ~~G~e~l~a~l~~lg  664 (975)
T KOG0520|consen  650 FRGREKLVASLIELG  664 (975)
T ss_pred             hcCHHHHHHHHHHhc
Confidence            999999999998654

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.73  E-value=3e-05  Score=69.12  Aligned_cols=51  Identities=27%  Similarity=0.683  Sum_probs=38.8

Q ss_pred             CCCcccccCccce--------EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          301 PDPCVVCLERKCT--------VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       301 ~d~C~vC~~~~~~--------v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      .+.|.||++....        .+..+|||.+|..|........            ..||+||..+.+++|-
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~------------~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK------------NTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC------------CCCCCCCCEeeEEeee
Confidence            4789999986322        2455899999999998765332            3599999999988764

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2e-05  Score=65.29  Aligned_cols=46  Identities=30%  Similarity=0.730  Sum_probs=35.5

Q ss_pred             CCcccccCccceE--EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          302 DPCVVCLERKCTV--AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       302 d~C~vC~~~~~~v--~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      --|.||++.....  ++..|||.||.+|.+..-...            ..||+||..|..
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~------------~~CP~C~kkIt~  179 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT------------NKCPTCRKKITH  179 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHhC------------CCCCCcccccch
Confidence            4589999865544  567999999999998876554            359999986653

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.3e-05  Score=74.02  Aligned_cols=49  Identities=41%  Similarity=0.869  Sum_probs=38.1

Q ss_pred             CCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      -++.|+||.+.+=..++.||||..|  |.  .|+.-           .+.||+||+.|...+|.
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct--~cs~~-----------l~~CPvCR~rI~~~~k~  352 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CT--LCSKH-----------LPQCPVCRQRIRLVRKR  352 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--ch--HHHhh-----------CCCCchhHHHHHHHHHH
Confidence            3678999999999999999999844  33  44433           23499999999988764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.56  E-value=8.9e-05  Score=63.26  Aligned_cols=60  Identities=18%  Similarity=0.426  Sum_probs=41.5

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccc----cCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVA----KGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~----~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.||++..-..+..+|||.+|..|........+.....    ........||+||..|..-
T Consensus        18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            35699999988777888999999999998765432211100    0112345799999999763

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.52  E-value=0.00028  Score=67.70  Aligned_cols=70  Identities=23%  Similarity=0.295  Sum_probs=59.2

Q ss_pred             HhcCCHHHHHHHHHcCCCccccc---ccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          179 TLNGHVESVQLLLDLGASVSEYL---SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       179 a~~g~~~~v~~Ll~~ga~~~~~~---~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      ....-.+.+++|.+++.+.|...   ..+..-.|+||+|+..|..++|.+||+.|+|+..+|..|+||++++.
T Consensus       399 kk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  399 KKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            44455788999999999887531   22334689999999999999999999999999999999999999987

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=97.51  E-value=0.00013  Score=46.45  Aligned_cols=42  Identities=31%  Similarity=0.755  Sum_probs=28.8

Q ss_pred             cccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       304 C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      |.||++-.-.-+..+|||.+|..|...+......        ....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~--------~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG--------SGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS--------ST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCC--------cCCCCcCC
Confidence            6788887777789999999999999888755411        12679988

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.51  E-value=0.00012  Score=47.17  Aligned_cols=44  Identities=39%  Similarity=0.816  Sum_probs=32.5

Q ss_pred             CcccccCcc-ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          303 PCVVCLERK-CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       303 ~C~vC~~~~-~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .|.+|.+.. ..+...+|||.+|..|+..+...           +...||.||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-----------CcCCCCCCCCcC
Confidence            377888876 34455569999999999877644           235699999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.49  E-value=0.00012  Score=46.00  Aligned_cols=38  Identities=32%  Similarity=0.874  Sum_probs=29.0

Q ss_pred             cccccCccceE-EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          304 CVVCLERKCTV-AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       304 C~vC~~~~~~v-~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      |.+|++..... +..+|||.+|..|+..+-...            ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~------------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN------------PKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT------------SB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc------------CCCcCC
Confidence            67888877766 789999999999998876553            359987

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.37  E-value=0.00019  Score=46.38  Aligned_cols=40  Identities=35%  Similarity=0.870  Sum_probs=29.5

Q ss_pred             cccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcc
Q 014696          304 CVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRH  355 (420)
Q Consensus       304 C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~  355 (420)
                      |.+|++..   -......|||.+|..|+..+-            .....||+||+
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~------------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK------------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc------------CCCCCCcCCCC
Confidence            56666555   345788999999999996664            23567999984

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.35  E-value=6.2e-05  Score=69.86  Aligned_cols=52  Identities=27%  Similarity=0.627  Sum_probs=41.6

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      .+.|.||-+..-.|-..||||.+|..|+-..-...          ....|||||.+|..+..
T Consensus       369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd----------~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD----------EGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHHHhhccCCCcccccccchHHHHHHHhhcccC----------CCCCCCceeeEeccccc
Confidence            56799999999999999999999999985442111          23459999999988754

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.34  E-value=0.00021  Score=45.36  Aligned_cols=40  Identities=38%  Similarity=0.886  Sum_probs=31.9

Q ss_pred             cccccCccceEE-EeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          304 CVVCLERKCTVA-AKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       304 C~vC~~~~~~v~-~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      |.+|++...... ..+|||.+|..|....-...          +...||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~----------~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS----------GSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT----------SSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhc----------CCccCCcC
Confidence            678888776666 89999999999999887652          34569988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02926 zinc finger-like protein; Provisional

Probab=97.34  E-value=0.00019  Score=61.92  Aligned_cols=57  Identities=25%  Similarity=0.488  Sum_probs=40.5

Q ss_pred             CCCCcccccCccc---------eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          300 CPDPCVVCLERKC---------TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       300 ~~d~C~vC~~~~~---------~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      .++.|.+|++..-         .-...+|+|.||..|....-....      .......||+||.....+++
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~------~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR------ETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc------ccCcCCcCCCCcceeeeecc
Confidence            3578999998521         125568999999999998876431      12245679999988775544

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0001  Score=65.19  Aligned_cols=45  Identities=33%  Similarity=0.755  Sum_probs=37.1

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHH-HhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALY-LCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~-lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      -.|.+|++.+-.....+|||.||-.|.+. .+...           .-.||+||+.+
T Consensus       216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-----------~~~CplCRak~  261 (271)
T COG5574         216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-----------YEFCPLCRAKV  261 (271)
T ss_pred             cceeeeecccCCcccccccchhhHHHHHHHHHhhc-----------cccCchhhhhc
Confidence            45999999999999999999999999988 44332           34599999865

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00017  Score=62.77  Aligned_cols=49  Identities=27%  Similarity=0.574  Sum_probs=41.0

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .|.||+|..-.-+...|||.+|=-|...+-.+.         +.+..||+|+..|..=
T Consensus        49 dCNICLd~akdPVvTlCGHLFCWpClyqWl~~~---------~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   49 DCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTR---------PNSKECPVCKAEVSID   97 (230)
T ss_pred             eeeeeccccCCCEEeecccceehHHHHHHHhhc---------CCCeeCCccccccccc
Confidence            499999999998999999999999997776554         3456699999988654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00023  Score=68.85  Aligned_cols=52  Identities=31%  Similarity=0.718  Sum_probs=42.8

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ...|.||++.+..-.-..|||.+|-.|.+.+....+    .   -+-..||+||..|.-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~---~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----I---KGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----c---cCCccCCchhhhccc
Confidence            568999999888778888999999999999987761    1   234579999998865

>smart00248 ANK ankyrin repeats

Probab=96.99  E-value=0.0013  Score=37.09  Aligned_cols=28  Identities=39%  Similarity=0.650  Sum_probs=24.3

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCCCcc
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGASLT  234 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~gad~~  234 (420)
                      |.||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6789999999999999999999887664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.94  E-value=0.0012  Score=47.84  Aligned_cols=43  Identities=35%  Similarity=0.815  Sum_probs=32.1

Q ss_pred             CCCCcccccCcc-------------ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCc
Q 014696          300 CPDPCVVCLERK-------------CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCR  354 (420)
Q Consensus       300 ~~d~C~vC~~~~-------------~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR  354 (420)
                      ..|.|.||++..             +.+...+|||.+...|....-....            .||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------------TCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------------B-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------------cCCCCC
Confidence            356688888654             7788889999999999987765542            599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>smart00248 ANK ankyrin repeats

Probab=96.94  E-value=0.0017  Score=36.61  Aligned_cols=26  Identities=46%  Similarity=0.880  Sum_probs=15.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCC
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDI   77 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v   77 (420)
                      .||||+|+..|+.++++.|++.|.++
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            45666666666666666666655544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00184 RING Ring finger

Probab=96.89  E-value=0.0011  Score=41.02  Aligned_cols=39  Identities=33%  Similarity=0.844  Sum_probs=30.4

Q ss_pred             cccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       304 C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      |.+|++........+|||.+|..|...+..           .+...||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-----------~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-----------SGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHH-----------hCcCCCCCC
Confidence            568888777778889999999999987754           123459987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.87  E-value=0.0021  Score=61.96  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=37.3

Q ss_pred             CcHHHHHHHHHcCCCCCC------ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           62 GHHEIVSLLIESGVDINL------RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        62 g~~~iv~~Ll~~g~~v~~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .-...+++|.+++.+.|.      .+...-|+||+|+.+|..++|.+||+.|+|+...|. .|+||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhccc-CCCCcccccc
Confidence            335556666666554432      223344666666666666666666666666666665 6666666555

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.84  E-value=0.019  Score=48.60  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhh
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILST  261 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~  261 (420)
                      -|..|+..|-...|...+++|.+++.      ++|..|+++++..++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            46778888888888888888777653      67888888888888777654

These proteins may be involved in promoting survival of infected macrophages [].

>TIGR00599 rad18 DNA repair protein rad18

Probab=96.77  E-value=0.00077  Score=64.78  Aligned_cols=47  Identities=28%  Similarity=0.574  Sum_probs=37.3

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .-.|.||.+....-+..+|||.||..|........            ..||.||..+..
T Consensus        26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~------------~~CP~Cr~~~~~   72 (397)
T TIGR00599        26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ------------PKCPLCRAEDQE   72 (397)
T ss_pred             ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC------------CCCCCCCCcccc
Confidence            34799999977666778999999999998765332            259999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.67  E-value=0.014  Score=50.75  Aligned_cols=122  Identities=18%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcc
Q 014696           87 ALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD  166 (420)
Q Consensus        87 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      .|--|+..-+.+-+.-++.        +...-.++|.+|+.++..+++-+|+.+..-...+              .... 
T Consensus       156 sledAV~AsN~~~i~~~Vt--------dKkdA~~Am~~si~~~K~dva~~lls~f~ft~~d--------------v~~~-  212 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVT--------DKKDAHQAMWLSIGNAKEDVALYLLSKFNFTKQD--------------VASM-  212 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhc--------chHHHHHHHHHHhcccHHHHHHHHHhhcceecch--------------hhhc-
Confidence            4556666666665555542        2224678899999999999999999753211100              0000 


Q ss_pred             cccchhhHHHHH--HhcCCHHHHHHHHHcCC-CcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCc
Q 014696          167 ERYFHLEVLLHL--TLNGHVESVQLLLDLGA-SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL  233 (420)
Q Consensus       167 ~~~~~~~~~l~a--a~~g~~~~v~~Ll~~ga-~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~  233 (420)
                        ..+..-+-++  .-..+..++++.+++|. ++|.....-+.|.|.|.-|.+.++.+++.+||++||-.
T Consensus       213 --~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  213 --EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             --CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence              0011122222  34456778888888874 77776677778889999999999999999999988843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.46  E-value=0.0031  Score=58.10  Aligned_cols=47  Identities=23%  Similarity=0.550  Sum_probs=33.1

Q ss_pred             CCCcccccCc----cce--EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLER----KCT--VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~----~~~--v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ...|.+|...    +..  ++. +|||.+|..|...+....           ..+||.|+..+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~-----------~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRG-----------SGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCC-----------CCCCCCCCCccch
Confidence            3579999873    221  233 799999999998876332           2369999966654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=96.28  E-value=0.0033  Score=40.09  Aligned_cols=31  Identities=32%  Similarity=0.710  Sum_probs=18.4

Q ss_pred             cccccCccce----EEEeCCCcccchhhHHHHhhcC
Q 014696          304 CVVCLERKCT----VAAKGCDHEFCTQCALYLCSTN  335 (420)
Q Consensus       304 C~vC~~~~~~----v~~~~cgH~~C~~C~~~lc~~~  335 (420)
                      |.||.+ ..+    -...+|||.+|..|...+.+..
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            567777 433    3446799999999999998754

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0028  Score=55.76  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=34.1

Q ss_pred             CcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      .|..|.++..+|...||.|. +|..|.                .+...||+|+..+.+.+.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~----------------~~~~~CPiC~~~~~s~~~  204 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICD----------------ESLRICPICRSPKTSSVE  204 (207)
T ss_pred             cceecCcCCceEEeecccceEeccccc----------------ccCccCCCCcChhhceee
Confidence            39999999999999999996 555555                113349999988877653

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.022  Score=52.97  Aligned_cols=54  Identities=17%  Similarity=0.483  Sum_probs=39.0

Q ss_pred             CCCCCCcccccCccceE-------------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          298 STCPDPCVVCLERKCTV-------------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       298 ~~~~d~C~vC~~~~~~v-------------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ..+...|.+|+|..-.-             --.||||.+--.|++..|...            ..||+||.+++-=.|-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq------------QTCPICr~p~ifd~~~  350 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ------------QTCPICRRPVIFDQSS  350 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc------------cCCCcccCccccccCC
Confidence            44457799999862111             345799999999999998665            3599999996544443

>smart00504 Ubox Modified RING finger domain

Probab=95.70  E-value=0.014  Score=40.80  Aligned_cols=44  Identities=9%  Similarity=0.051  Sum_probs=33.8

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      .|.+|.+-.-.-+..+|||.+|.+|........            ..||+|+..+.
T Consensus         3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~------------~~cP~~~~~~~   46 (63)
T smart00504        3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLSH------------GTDPVTGQPLT   46 (63)
T ss_pred             CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC------------CCCCCCcCCCC
Confidence            477887765555777999999999998876442            25999998873

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.66  E-value=0.0058  Score=40.57  Aligned_cols=45  Identities=24%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      +.+|+.|....-.-...+|||..|..|.-.-              .-..||+|-.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--------------rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--------------RYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChh--------------hccCCCCCCCcccC
Confidence            4568888877666678899999999998211              12349999987753

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=95.65  E-value=0.0072  Score=54.15  Aligned_cols=56  Identities=27%  Similarity=0.524  Sum_probs=40.9

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCCCCCc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPI  369 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~~  369 (420)
                      ...|.||-++...-+..+|||.||.-|-+..-.+-            ..||+||.+- .+..+|+.+-+
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q------------p~CP~Cr~~~-~esrlr~~s~~   80 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ------------PFCPVCREDP-CESRLRGSSGS   80 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHhcCC------------CCCccccccH-HhhhcccchhH
Confidence            45699999988877889999999999997765433            3499999764 33455554433

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.007  Score=54.77  Aligned_cols=50  Identities=24%  Similarity=0.444  Sum_probs=36.5

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      .++|.+|....-.-+-.+|+|.+|--|..---       .    -.+..|++||.+|.+-.
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy-------~----ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSY-------K----NDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCCcCccccccchhhhhhhcchh-------h----cCCCCCceecCCCCcch
Confidence            46899999766555888999999988873221       1    12345999999999853

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.38  E-value=0.25  Score=41.92  Aligned_cols=140  Identities=17%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      -.|.-|+.++.+.|++..-+...+-   -...++-+..||+..+.|+|+|+-+   +....   +-.+.+..|....+.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~q---nL~i~---~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQ---NLHIY---NPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhh---ccCCC---Cchhhhhhhhhccchh
Confidence            4667788899999998887653211   2346788889999999999999933   32222   3456678888888877


Q ss_pred             HHHH----HHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          133 CIRL----LLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       133 iv~~----Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      ...+    ++++..+.                  ...+....-..-+-.|+..|-...+...+++|-+++         .
T Consensus       119 LyslGY~l~~~~~~~~------------------~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~---------~  171 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE------------------HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD---------I  171 (192)
T ss_pred             HHHHHHHHHHhhcccc------------------cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc---------H
Confidence            5321    11110000                  011111111223445589999999999999998887         3


Q ss_pred             cHHHHHHHcCCHHHHHHHHH
Q 014696          209 TSLHYAACGGNAQCCQILIA  228 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~  228 (420)
                      ++|..|+..++..++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            89999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=95.17  E-value=0.0085  Score=54.91  Aligned_cols=45  Identities=27%  Similarity=0.623  Sum_probs=36.9

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .|.||.+-.-.-...||||.+|.-|-+..-+..            ..||.|+-.+.+
T Consensus        25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~------------p~CP~C~~~~~E   69 (442)
T KOG0287|consen   25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK------------PQCPTCCVTVTE   69 (442)
T ss_pred             HHhHHHHHhcCceeccccchHHHHHHHHHhccC------------CCCCceecccch
Confidence            589999988777888999999999998876554            239999977654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.0088  Score=54.04  Aligned_cols=44  Identities=30%  Similarity=0.622  Sum_probs=31.3

Q ss_pred             CcccccCccc---eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          303 PCVVCLERKC---TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       303 ~C~vC~~~~~---~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .|++|++..-   -+.+.||.|++-+.|.-..--           .-+..||+||.+|
T Consensus       325 eCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-----------~y~~~CPvCrt~i  371 (374)
T COG5540         325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-----------GYSNKCPVCRTAI  371 (374)
T ss_pred             eEEEEhhhhcccceEEEeccCceechhHHHHHHh-----------hhcccCCccCCCC
Confidence            6999996442   247889999988888744332           1234599999876

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.015  Score=54.58  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=33.8

Q ss_pred             CCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          302 DPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       302 d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      +.|+||+|.-   -.+...||+|.+-..|--..-           ...+..||+|++.|-.-.+
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL-----------~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWL-----------TQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhH-----------hhcCccCCCCCCcCCCCCC
Confidence            5899999743   345779999997666653222           2224459999996655443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.05  E-value=0.018  Score=52.91  Aligned_cols=51  Identities=27%  Similarity=0.568  Sum_probs=41.2

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      ...|.||-+..--+...||+|.+|-.|++.+=..-+.          .-||+||.+-..++
T Consensus        61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~----------K~C~~CrTE~e~V~  111 (493)
T COG5236          61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQ----------KGCPLCRTETEAVV  111 (493)
T ss_pred             cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhc----------cCCCccccccceEE
Confidence            4569999999888899999999999999887655522          23999998876664

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.01  Score=60.56  Aligned_cols=43  Identities=30%  Similarity=0.685  Sum_probs=36.9

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHG  356 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~  356 (420)
                      .|.+|.+++=.++...|||.||-.|......+.           .+.||-|-..
T Consensus       645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-----------qRKCP~Cn~a  687 (698)
T KOG0978|consen  645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-----------QRKCPKCNAA  687 (698)
T ss_pred             eCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-----------cCCCCCCCCC
Confidence            399999999999999999999999998776555           5679999754

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.26  E-value=0.23  Score=43.51  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCCccCCCCCHHHHHHHc
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES----GVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .|-.|+...|++.+..++....+         -.++|-+|+.++..+++-+|+.+    .-|+-.. ..+.--+.|+...
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd---------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD---------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH---------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhh
Confidence            47789999999999888865422         14799999999999999999975    1122111 1133345565543


Q ss_pred             --CcHHHHHHHHHcCC-CCCcc--ccCCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 014696           95 --GHWEVVLTLILYKA-NIHRA--DYLNGGTALHLAALNGHSRCIRLLLADYIPS  144 (420)
Q Consensus        95 --g~~~iv~~Ll~~ga-~~~~~--~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~  144 (420)
                        .+..++++.+..|- ++|..  .-..|.|-|.-|+..++.+++.+|+++|+..
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence              35778999999873 55532  2237999999999999999999999988743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=0.022  Score=54.04  Aligned_cols=44  Identities=32%  Similarity=0.739  Sum_probs=35.7

Q ss_pred             CCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRH  355 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~  355 (420)
                      ++-.|.||++..-.-...+|||.+|..|...+..            ....||.||.
T Consensus        12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~------------~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE------------GPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcCccccccchHhHHHHHHhcC------------CCcCCcccCC
Confidence            3457999998776668889999999999977765            3367999995

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=93.74  E-value=0.089  Score=38.71  Aligned_cols=39  Identities=33%  Similarity=0.708  Sum_probs=28.1

Q ss_pred             ccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          310 RKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       310 ~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      ..|.++.-.|+|.|-..|.+..-++..         ....||+||+..
T Consensus        43 d~Cplv~g~C~H~FH~hCI~kWl~~~~---------~~~~CPmCR~~w   81 (85)
T PF12861_consen   43 DDCPLVWGKCSHNFHMHCILKWLSTQS---------SKGQCPMCRQPW   81 (85)
T ss_pred             CCCceeeccCccHHHHHHHHHHHcccc---------CCCCCCCcCCee
Confidence            345666667999999999988776541         123699999764

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.96  E-value=0.15  Score=45.73  Aligned_cols=59  Identities=24%  Similarity=0.487  Sum_probs=41.9

Q ss_pred             CCCCcccccCccceE-EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCCCCC
Q 014696          300 CPDPCVVCLERKCTV-AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRP  368 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v-~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~  368 (420)
                      ..-.|.+|.+.+..- ...+|||..|=-|...-+...          -+-.||.|-..+..+.+-+..+|
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~----------asf~Cp~Cg~~~~~lq~sgv~~~  297 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD----------ASFTCPLCGENVEPLQASGVKSP  297 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcch----------hhcccCccCCCCcchhhccCCCC
Confidence            345799999988665 444599999999986655433          12249999999988875555443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.48  E-value=0.062  Score=55.02  Aligned_cols=44  Identities=27%  Similarity=0.673  Sum_probs=36.9

Q ss_pred             CCCCcccccCccce-----EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcc
Q 014696          300 CPDPCVVCLERKCT-----VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRH  355 (420)
Q Consensus       300 ~~d~C~vC~~~~~~-----v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~  355 (420)
                      ..+.|.||.|..-.     .--.+|||.++..|.+......+            .||+||.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q------------tCP~CR~  338 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ------------TCPTCRT  338 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC------------cCCcchh
Confidence            35789999997766     57779999999999999987653            3999998

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.44  E-value=0.086  Score=46.65  Aligned_cols=47  Identities=26%  Similarity=0.613  Sum_probs=30.5

Q ss_pred             cccccCcc--ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCC
Q 014696          304 CVVCLERK--CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPG  365 (420)
Q Consensus       304 C~vC~~~~--~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  365 (420)
                      |-.|...+  -.++...|+|++|..|...-              ....||+||.. ++.+++=.
T Consensus         6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--------------~~~~C~lCkk~-ir~i~l~~   54 (233)
T KOG4739|consen    6 CNKCFRFPSQDPFFLTACRHVFCEPCLKAS--------------SPDVCPLCKKS-IRIIQLNR   54 (233)
T ss_pred             eccccccCCCCceeeeechhhhhhhhcccC--------------Cccccccccce-eeeeeccc
Confidence            55555433  34577889999999998221              11169999987 55555433

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=92.44  E-value=0.045  Score=37.70  Aligned_cols=40  Identities=28%  Similarity=0.784  Sum_probs=17.2

Q ss_pred             CcccccCccceEE-EeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccc
Q 014696          303 PCVVCLERKCTVA-AKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHG  356 (420)
Q Consensus       303 ~C~vC~~~~~~v~-~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~  356 (420)
                      .|.+|.+-.-..+ ...|.|.+|..|....-              ...||+|+.+
T Consensus         9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~--------------~~~CPvC~~P   49 (65)
T PF14835_consen    9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCI--------------GSECPVCHTP   49 (65)
T ss_dssp             S-SSS-S--SS-B---SSS--B-TTTGGGGT--------------TTB-SSS--B
T ss_pred             CCcHHHHHhcCCceeccCccHHHHHHhHHhc--------------CCCCCCcCCh
Confidence            4677776544443 46899999999983311              1239999943

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=0.077  Score=51.30  Aligned_cols=47  Identities=30%  Similarity=0.696  Sum_probs=35.7

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      -.|.||++..-.-+..||||-+|..|... |..           ....||.||.++.++
T Consensus        85 f~c~vc~~~l~~pv~tpcghs~c~~Cl~r-~ld-----------~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   85 FECCVCSRALYPPVVTPCGHSFCLECLDR-SLD-----------QETECPLCRDELVEL  131 (398)
T ss_pred             hhhhhhHhhcCCCccccccccccHHHHHH-Hhc-----------cCCCCcccccccccc
Confidence            45899987666667779999999999765 222           234599999999974

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=0.079  Score=49.02  Aligned_cols=49  Identities=16%  Similarity=0.461  Sum_probs=39.4

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+.+.|.||...+.+-++.||||..|..|-..---.+            ..|-+|+..|..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~------------k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC------------KRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhcC------------CeeeEecceeee
Confidence            3457799999999999999999999999986654333            459999977664

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.05  E-value=0.25  Score=35.97  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=19.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHH
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLIL  105 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  105 (420)
                      .|..|+..|+.||++.+++.+ .++      ...|..|+...+-++++||++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHH
Confidence            344444444444444444332 111      223444444444444444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.07  E-value=0.14  Score=48.08  Aligned_cols=44  Identities=25%  Similarity=0.683  Sum_probs=33.8

Q ss_pred             CCcccccCccceE---EEeC-CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCc
Q 014696          302 DPCVVCLERKCTV---AAKG-CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCR  354 (420)
Q Consensus       302 d~C~vC~~~~~~v---~~~~-cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR  354 (420)
                      ..|.||.|....+   .+++ |||.+-..|+......+         |-.+.||.||
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~---------Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGD---------PSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccC---------CccCCCCcee
Confidence            4799998766655   5666 99999999988887666         2236699999

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.81  E-value=0.52  Score=34.25  Aligned_cols=49  Identities=27%  Similarity=0.301  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES   73 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~   73 (420)
                      +.+.+..|+..|+.|+++.+++.+. ..        ...|..|+..-+.++++||++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~~-~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKNK-PD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHhc-cH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3467999999999999999997662 11        3589999999999999999996

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.42  E-value=0.14  Score=48.65  Aligned_cols=50  Identities=24%  Similarity=0.684  Sum_probs=38.1

Q ss_pred             CcccccCccc---eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccc
Q 014696          303 PCVVCLERKC---TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHG  356 (420)
Q Consensus       303 ~C~vC~~~~~---~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~  356 (420)
                      .|.||++..-   -+...||+|.+|..|++.+....    +.++......||-+.-+
T Consensus       186 ~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~----i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  186 DCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQ----IQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cceeeehhhcCcceeeecccchHHHHHHHHHHHHHh----hhcceeeeecCCCCCCc
Confidence            5899997443   34778999999999999998776    45555666779887644

>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.91  E-value=0.12  Score=40.96  Aligned_cols=58  Identities=28%  Similarity=0.560  Sum_probs=44.1

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      ...|-||..   +-+|-+||| .|.-|....|..|.-....+..--+..|-+||....-+.|
T Consensus        65 datC~IC~K---TKFADG~GH-~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~k  122 (169)
T KOG3799|consen   65 DATCGICHK---TKFADGCGH-NCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTK  122 (169)
T ss_pred             Ccchhhhhh---cccccccCc-ccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHh
Confidence            356999987   458889999 6888999999988655555544556779999987776655

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=88.11  E-value=0.86  Score=37.64  Aligned_cols=30  Identities=23%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             CCCCCCCCccccccccccCCCCCc-cccccc
Q 014696          346 GSIPCPLCRHGIVSFDKLPGTRPI-KEITRT  375 (420)
Q Consensus       346 ~~~~CP~CR~~I~~~~~~~~~~~~-~~~~~~  375 (420)
                      ....||+||++|..|+..-..+-- -...|.
T Consensus        79 ~~L~CPLCRG~V~GWtvve~AR~~LN~K~Rs  109 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVVEPARRFLNAKKRS  109 (162)
T ss_pred             ccccCccccCceeceEEchHHHHHhccCCcc
Confidence            356799999999999887332222 356664

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=87.93  E-value=0.15  Score=55.52  Aligned_cols=72  Identities=25%  Similarity=0.493  Sum_probs=46.2

Q ss_pred             CCCCCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCCCCCcccc
Q 014696          299 TCPDPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPGTRPIKEI  372 (420)
Q Consensus       299 ~~~d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~~~~~  372 (420)
                      +..|.|+||+...   +.-.-.+|||.+-.+|.+..-...-.  -.+-.-+-+.||+|.++|...+-----.|+|++
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~--GPRItF~FisCPiC~n~InH~~LkDLldPiKel 3558 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWL--GPRITFGFISCPICKNKINHIVLKDLLDPIKEL 3558 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhccc--CCeeEEeeeecccccchhhhHHHHHHHHHHHHH
Confidence            3357899998644   23355689999999998887665511  111223457799999999887532112566544

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=87.88  E-value=0.24  Score=45.12  Aligned_cols=46  Identities=26%  Similarity=0.603  Sum_probs=32.0

Q ss_pred             CcccccCccceE--EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          303 PCVVCLERKCTV--AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       303 ~C~vC~~~~~~v--~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      .|..|.- +..|  -.+||.|.||-+|++.--              .+-||.|...|.++..+
T Consensus        92 fCd~Cd~-PI~IYGRmIPCkHvFCl~CAr~~~--------------dK~Cp~C~d~VqrIeq~  139 (389)
T KOG2932|consen   92 FCDRCDF-PIAIYGRMIPCKHVFCLECARSDS--------------DKICPLCDDRVQRIEQI  139 (389)
T ss_pred             eecccCC-cceeeecccccchhhhhhhhhcCc--------------cccCcCcccHHHHHHHh
Confidence            3556633 3333  567899999999994321              33599999998888655

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.60  E-value=0.33  Score=50.88  Aligned_cols=51  Identities=25%  Similarity=0.643  Sum_probs=36.6

Q ss_pred             CCCCCCcccccC------cc-ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          298 STCPDPCVVCLE------RK-CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       298 ~~~~d~C~vC~~------~~-~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      -...++|.+|..      +. ..--+.-|.|.+-++|........          ++..||+||.+|.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss----------~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS----------ARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc----------CCCCCCccccccc
Confidence            345688999973      21 222444699999999998887665          4556999998875

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=87.42  E-value=0.34  Score=44.69  Aligned_cols=61  Identities=21%  Similarity=0.415  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCcccccCccce----EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc----cccccc
Q 014696          292 RNSDSLSTCPDPCVVCLERKCT----VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI----VSFDKL  363 (420)
Q Consensus       292 ~~~~~~~~~~d~C~vC~~~~~~----v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I----~~~~~~  363 (420)
                      +++....+++|-|..|.+..-.    +..-+||-+.|.-|+-.+-..           ..-+||.||+.-    ++|+.+
T Consensus         5 qei~~sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-----------lngrcpacrr~y~denv~~~~~   73 (480)
T COG5175           5 QEIHNSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-----------LNGRCPACRRKYDDENVRYVTL   73 (480)
T ss_pred             hhccccccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-----------ccCCChHhhhhccccceeEEec
Confidence            3445566677889999985422    244569999999998443221           344699999854    455554

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=0.45  Score=45.14  Aligned_cols=57  Identities=25%  Similarity=0.523  Sum_probs=39.1

Q ss_pred             CCCCCcccccCccceEE-----E---eCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          299 TCPDPCVVCLERKCTVA-----A---KGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~-----~---~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .....|.||++..-...     +   .+|-|-+|.+|.+..=.....     .......||+||..+..+
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~-----~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF-----ESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc-----ccccccCCCcccCccccc
Confidence            34578999998665555     3   569999999999765432211     223456799999877655

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=86.99  E-value=0.26  Score=51.33  Aligned_cols=49  Identities=27%  Similarity=0.688  Sum_probs=36.4

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      ..|.+|.+ ....+..+|||.+|..|....-....          ..+||.||..+..-.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~----------~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE----------NAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhcccccc----------CCCCcHHHHHHHHHH
Confidence            68999999 55556679999999999954432221          127999999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.77  E-value=0.38  Score=43.78  Aligned_cols=48  Identities=29%  Similarity=0.605  Sum_probs=35.6

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      +..|-+|....-.-+...|||.+|..|++.-.        ..+    .+|++|.+++-..
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~--------qk~----~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPY--------QKG----EKCYVCSQQTHGS  288 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccc--------ccC----Ccceecccccccc
Confidence            45699998866666777999999999994332        222    3499999888765

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.33  E-value=0.55  Score=44.12  Aligned_cols=44  Identities=32%  Similarity=0.758  Sum_probs=30.6

Q ss_pred             CcccccCccceE------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          303 PCVVCLERKCTV------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       303 ~C~vC~~~~~~v------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .|.+|.+.-...      .-..|||.+|..|+-.+....           .+.||+||...
T Consensus         5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-----------~i~cpfcR~~~   54 (296)
T KOG4185|consen    5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-----------RILCPFCRETT   54 (296)
T ss_pred             ceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-----------eeeccCCCCcc
Confidence            466665533333      222399999999997776544           56799999886

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=83.54  E-value=1  Score=29.27  Aligned_cols=28  Identities=25%  Similarity=0.627  Sum_probs=14.6

Q ss_pred             CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccc
Q 014696          318 GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHG  356 (420)
Q Consensus       318 ~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~  356 (420)
                      +||++.|..|+..+-..           ....||-||.+
T Consensus        19 ~Cgf~IC~~C~~~i~~~-----------~~g~CPgCr~~   46 (48)
T PF14570_consen   19 ECGFQICRFCYHDILEN-----------EGGRCPGCREP   46 (48)
T ss_dssp             TTS----HHHHHHHTTS-----------S-SB-TTT--B
T ss_pred             cCCCcHHHHHHHHHHhc-----------cCCCCCCCCCC
Confidence            69999999999777542           23469999965

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.54  E-value=0.51  Score=45.93  Aligned_cols=31  Identities=35%  Similarity=0.759  Sum_probs=24.2

Q ss_pred             EeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          316 AKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       316 ~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      ..||-|.+-++|++..-.+.           ...||.||.++
T Consensus       603 ~tPC~HifH~~CL~~WMd~y-----------kl~CPvCR~pL  633 (636)
T KOG0828|consen  603 LTPCHHIFHRQCLLQWMDTY-----------KLICPVCRCPL  633 (636)
T ss_pred             ccchHHHHHHHHHHHHHhhh-----------cccCCccCCCC
Confidence            45899999999998776544           24599999875

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=82.52  E-value=0.81  Score=38.99  Aligned_cols=31  Identities=26%  Similarity=0.618  Sum_probs=25.0

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHh
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLC  332 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc  332 (420)
                      =.|.+|...--.-++..|||.+|..|+..-.
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y  227 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKY  227 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHh
Confidence            3599998777666777999999999995543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=82.44  E-value=0.84  Score=42.60  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=34.2

Q ss_pred             CCCCCCcccccCcc-ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          298 STCPDPCVVCLERK-CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       298 ~~~~d~C~vC~~~~-~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ..+.-.|.||.+.- ..+.--+.||..|..|...               ....||+||.+|..+
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---------------~~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---------------VSNKCPTCRLPIGNI   93 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh---------------hcccCCccccccccH
Confidence            34445699998744 3345556899999999832               345699999998866

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=81.30  E-value=2.3  Score=30.53  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=33.2

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      .|.++.+-.-.-+..++||.++..|........           ...||+||..+..-.=.
T Consensus         6 ~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~-----------~~~~P~t~~~l~~~~l~   55 (73)
T PF04564_consen    6 LCPITGELMRDPVILPSGHTYERSAIERWLEQN-----------GGTDPFTRQPLSESDLI   55 (73)
T ss_dssp             B-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT-----------SSB-TTT-SB-SGGGSE
T ss_pred             CCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC-----------CCCCCCCCCcCCcccce
Confidence            467777766666778999999999998877552           34699999887764333

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=80.88  E-value=0.72  Score=43.57  Aligned_cols=45  Identities=31%  Similarity=0.634  Sum_probs=33.7

Q ss_pred             cccccC----ccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          304 CVVCLE----RKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       304 C~vC~~----~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      |-.|.+    ++-...+.||.|.+-.+|+..+-..+          +.+.||.||.-+.
T Consensus       368 Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n----------~~rsCP~CrklrS  416 (518)
T KOG1941|consen  368 CGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN----------GTRSCPNCRKLRS  416 (518)
T ss_pred             hhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC----------CCCCCccHHHHHh
Confidence            667765    44556889999999999998877555          3456999994443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=80.44  E-value=1.2  Score=43.08  Aligned_cols=42  Identities=33%  Similarity=0.721  Sum_probs=30.0

Q ss_pred             CCCcccccCccc----eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccc
Q 014696          301 PDPCVVCLERKC----TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHG  356 (420)
Q Consensus       301 ~d~C~vC~~~~~----~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~  356 (420)
                      .-.|.||++|.-    -+....|.|-+-..|+....              ...||+||..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--------------~~scpvcR~~  220 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--------------DSSCPVCRYC  220 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhcc--------------cCcChhhhhh
Confidence            446999998653    23788999998777874443              3349999943

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=1.5  Score=39.35  Aligned_cols=72  Identities=21%  Similarity=0.487  Sum_probs=46.4

Q ss_pred             HHHcCCCCCCCCC---CCCCCcccccCccce----------EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCC
Q 014696          286 ARECGWRNSDSLS---TCPDPCVVCLERKCT----------VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPL  352 (420)
Q Consensus       286 a~~~g~~~~~~~~---~~~d~C~vC~~~~~~----------v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~  352 (420)
                      |..-|+-+...++   .+...|.||..+.-.          +.-..|+|.+-.-|-+-.|-..+          ...||+
T Consensus       206 As~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK----------kqtCPY  275 (328)
T KOG1734|consen  206 ASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK----------KQTCPY  275 (328)
T ss_pred             HHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC----------CCCCch
Confidence            4444544444333   234679999865422          24556999988888888885552          345999


Q ss_pred             CccccccccccCCCCCc
Q 014696          353 CRHGIVSFDKLPGTRPI  369 (420)
Q Consensus       353 CR~~I~~~~~~~~~~~~  369 (420)
                      |+..|+ +.++|+ -||
T Consensus       276 CKekVd-l~rmfs-npW  290 (328)
T KOG1734|consen  276 CKEKVD-LKRMFS-NPW  290 (328)
T ss_pred             HHHHhh-Hhhhcc-Ccc
Confidence            998875 456676 666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-18
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-18
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-16
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-09
1uoh_A	226	Human Gankyrin Length = 226		6e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		7e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		5e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		5e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		9e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		7e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		5e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		7e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G+RL+ AA +G+    K L+E    +    + G   +PLH++A  GH E+V LLI  G D
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGAD 62
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G+T L  A ++GH EVV  LI   A+++  D  +G T LH AA NGH   ++L
Sbjct: 63  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKL 121
Query: 137 LLA 139
           L++
Sbjct: 122 LIS 124

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 24/162 (14%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A ++G+ + V  LI   A+++ +D  +G T LH AA NGH   ++LL++        
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLIS------KG 60
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
           A    +    +T               L H   NGH E V+LL+  GA V+   S    G
Sbjct: 61  ADVNAKDSDGRT--------------PLHHAAENGHKEVVKLLISKGADVNAKDS---DG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
            T LH+AA  G+ +  ++LI+ GA +   +++G TPL +AR 
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           L H   NGH E V+LL+  GA V+   S    G T LH+AA  G+ +  ++LI+ GA + 
Sbjct: 41  LHHAAENGHKEVVKLLISKGADVNAKDS---DGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 235 AENANGWTPL-MVARSWHRTGLE-------DILSTQPEGR 266
           A++++G TPL   A + H+  ++       D+ ++  +GR
Sbjct: 98  AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G+RL+ AA +G+    K L+E    +    + G   +PLHY+A +GH EIV LLI  G D
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G+T L  A + GH E+V  LI   A+++  D  +G T LH AA  GH   ++L
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKL 121
Query: 137 LLA 139
           L++
Sbjct: 122 LIS 124

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A ++G+ + V  LI   A+++ +D  +G T LH AA  GH   ++LL++        
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLIS------KG 60
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
           A    +    +T               L +    GH E V+LL+  GA V+   S    G
Sbjct: 61  ADVNAKDSDGRT--------------PLHYAAKEGHKEIVKLLISKGADVNAKDS---DG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
            T LHYAA  G+ +  ++LI+ GA +   +++G TPL +AR      +  +L  Q
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G+RL+ AA +G+    K LLE    +    + G   +PLH +A  GH E+V LL+  G D
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADVNASDSDG--KTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
            N ++  G+T L  A ++GH EVV  L+   A+ +  D  +G T LHLAA NGH   ++L
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS-DGKTPLHLAAENGHKEVVKL 121
Query: 137 LLA 139
           LL+
Sbjct: 122 LLS 124

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 26/163 (15%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A ++G+ + V  L+   A+++ +D  +G T LHLAA NGH   ++LLL+    + PN
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQG--ADPN 64
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
           A +   K                     LHL   NGH E V+LLL  GA  +   S    
Sbjct: 65  AKDSDGK-------------------TPLHLAAENGHKEVVKLLLSQGADPNAKDS---D 102
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
           G T LH AA  G+ +  ++L++ GA     +++G TPL +AR 
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NGH E V+LLL  GA  +   S    G T LH AA  G+ +  ++L++ GA   
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDS---DGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 235 AENANGWTPL-MVARSWHR 252
           A++++G TPL + A + H+
Sbjct: 98  AKDSDGKTPLHLAAENGHK 116

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G+RL+ AA +G+    K LLE         + G   +PLHY+A  GH EIV LL+  G D
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADPNASDSDG--RTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
            N ++  G+T L  A ++GH E+V  L+L K     A   +G T LH AA NGH   ++L
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 137 LLA 139
           LL+
Sbjct: 122 LLS 124

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A ++G+ + V  L+   A+ + +D  +G T LH AA NGH   ++LLL+    + PN
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKG--ADPN 64
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
           A               + D R      L +   NGH E V+LLL  GA  +   +    G
Sbjct: 65  AK--------------DSDGRT----PLHYAAENGHKEIVKLLLSKGADPN---AKDSDG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
            T LHYAA  G+ +  ++L++ GA     +++G TPL +AR      +  +L  Q
Sbjct: 104 RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 5/140 (3%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +    T+G  ++PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  ++ G T L  A + GH E+V  L+ Y A+++  D + G T LHLAA  GH   + +
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
           LL  Y   V NA ++  K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  L+   A+++  D   G T LHLAA  GH   + +LL         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-GHVESVQLLLDLGASVSEYLSVSGA 206
                     K G+  + +   F     LHL    GH+E V++LL  GA V+   ++   
Sbjct: 68  ----------KNGA--DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI--- 112
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           GST LH AA  G+ +  ++L+  GA + A++  G T   ++       L +IL
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 23/144 (15%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PLH +A  GH E+V LL+E+G D+N ++  G+T L  A ++GH EVV  L+   A+++ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
            D  NG T LHLAA NGH   ++LLL         A    + K+ +T             
Sbjct: 64  KDK-NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTP------------ 104
Query: 173 EVLLHLTL-NGHVESVQLLLDLGA 195
              LHL   NGH+E V+LLL+ GA
Sbjct: 105 ---LHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
           NG T LHLAA NGH   ++LLL         A    + K+ +T                L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTP---------------L 39
Query: 177 HLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
           HL   NGH+E V+LLL+ GA V+   +    G T LH AA  G+ +  ++L+  GA + A
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Query: 236 ENANGWTPL-MVARSWH 251
           ++ NG TPL + AR+ H
Sbjct: 97  KDKNGRTPLHLAARNGH 113

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PLH +A  GH E+V LL+E+G D+N ++  G+T L  A ++GH EVV  L+   A+++ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
            D  NG T LHLAA NGH   ++LLL
Sbjct: 64  KDK-NGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NGH+E V+LLL+ GA V+   +    G T LH AA  G+ +  ++L+  GA + 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 235 AENANGWTPL-MVARSWH 251
           A++ NG TPL + AR+ H
Sbjct: 63  AKDKNGRTPLHLAARNGH 80

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G  ++PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDWLG--HTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A  +GH E+V  L+ + A+++  DY  G T LHLAA +GH   + +
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY-EGFTPLHLAAYDGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
           LL  Y   V NA ++  K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL    GH+E V++LL  GA V+ +      G+T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGADVNAW---DNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVA 247
           A++  G+TPL +A
Sbjct: 108 AKDYEGFTPLHLA 120

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A +GH EIV +L+++G D
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G T L  A + GH E+V  L+   A+++  D  +G T LHLAA  GH   + +
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 137 LL 138
           LL
Sbjct: 120 LL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  L+   A+++  D  +G T LHLAA  GH   + +LL         
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
                     K G+ +   ++  +    LHL    GH+E V++LL  GA V+   +    
Sbjct: 56  ----------KAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVN---AKDKD 100
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI 258
           G T LH AA  G+ +  ++L+  GA + A++  G TP  +A      G EDI
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAID---NGNEDI 149

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G+  +PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILIANGADVNAVDNTGL--TPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           ++  +  G T L  A   GH E+V  L+ Y A+++  D + G T LHLAA  GH   + +
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
           LL  Y   V NA ++  K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 26/161 (16%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  LI   A+++  D   G T LHLAA++GH   + +LL         
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLT-LNGHVESVQLLLDLGASVSEYLSVSGA 206
                     K G+ ++  + Y      LHL  + GH+E V++LL  GA V+ +      
Sbjct: 68  ----------KHGADVDAADVYGFTP--LHLAAMTGHLEIVEVLLKYGADVNAF---DMT 112
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           GST LH AA  G+ +  ++L+  GA + A++  G T   ++
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A +GH EIV +L+++G D
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G T L  A + GH E+V  L+   A+++  D  +G T LHLAA  GH   + +
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 137 LL 138
           LL
Sbjct: 120 LL 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  L+   A+++  D  +G T LHLAA  GH   + +LL         
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
                     K G+ +   ++  +    LHL    GH+E V++LL  GA V+   +    
Sbjct: 56  ----------KAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVN---AKDKD 100
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI 258
           G T LH AA  G+ +  ++L+  GA + A++  G TP  +A    R G EDI
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI---REGHEDI 149

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A +GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G T L  A + GH E+V  L+   A+++  D  +G T LHLAA  GH   + +
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL    GH+E V++LL  GA V+   +    G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAAREGHLEIVEVLLKAGADVN---AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 235 AENANGWTPL-MVARSWH 251
           A++ +G+TPL + AR  H
Sbjct: 108 AKDKDGYTPLHLAAREGH 125

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +     FG+  +PLH     GH EI+ +L++   D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDWFGI--TPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ Y A+++  DY  G T LHLAA +GH   + +
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAEDGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL +N GH+E +++LL   A V+   +   +G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAADVN---ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 235 AENANGWTPLMVA 247
           A +  G+TPL +A
Sbjct: 108 AMDYQGYTPLHLA 120

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +  +   G  ++PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N R+  G T L  A  +GH E+V  L+ Y A+++  D   G T LHLAA  GH   + +
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY-GLTPLHLAADRGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LL     G  + V++L+  GA V+ +      GST LH AA  G+ +  ++L+  GA + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAH---DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
           A + +GWTPL +A
Sbjct: 75  ARDTDGWTPLHLA 87

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+        Y  +G   +PLH +AA GH EIV +L+ +G D
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ Y A+++  D   G T L+LAA  GH   + +
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD-ATGITPLYLAAYWGHLEIVEV 119
Query: 137 LL 138
           LL
Sbjct: 120 LL 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
           GH+E V++LL  GA V+   +V   G+T LH AA  G+ +  ++L+  GA + A++A G 
Sbjct: 46  GHLEIVEVLLRNGADVN---AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI 102
Query: 242 TPLMVARSW 250
           TPL +A  W
Sbjct: 103 TPLYLAAYW 111

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AAR G  + AK LL+   ++   +      +PLH +A  GH  +V LL+E+  + NL   
Sbjct: 54  AARAGHTEVAKYLLQNKAKV--NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111
Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
            G T L  A + GH E VL L+  +A+        G T LH+AA  G  R   LLL    
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLER-- 168
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
            + PNA       + K G           L V +H   + +++ V+LLL  G S     S
Sbjct: 169 DAHPNA-------AGKNG--------LTPLHVAVH---HNNLDIVKLLLPRGGSPH---S 207
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL-MVARSWHRTGLEDILST 261
            +  G T LH AA     +  + L+  G S  AE+  G TPL + A+  H   +  +LS 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 262 QPEGRL 267
           Q  G L
Sbjct: 268 QANGNL 273

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A +GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDDSG--KTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A  +GH E+V  L+   A+++  D   G T LHLAA  GH   + +
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY-GFTPLHLAADAGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRK 154
           LL  Y   V NA ++  K
Sbjct: 132 LLK-YGADV-NAQDKFGK 147

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 176 LHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL  + GH+E V++LL  GA V+   +    G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAAIKGHLEIVEVLLKHGADVN---AADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVA 247
           A +  G+TPL +A
Sbjct: 108 ATDTYGFTPLHLA 120

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G+  +PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D   G T LHLAA+ GH   + +
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  L+   A+++  D  +G T LHLAA  GH   + +LL         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
                 K      +I        HL  L+     GH+E V++LL  GA V+   +V   G
Sbjct: 68  ------KHGADVNAIDIMGSTPLHLAALI-----GHLEIVEVLLKHGADVN---AVDTWG 113
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS 260
            T LH AA  G+ +  ++L+  GA + A++  G T   ++       L +IL 
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A+ GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDNDGY--TPLHLAASNGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D  +G T LHLAA  GH   + +
Sbjct: 73  VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NGH+E V++LL  GA V+   +    G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAASNGHLEIVEVLLKNGADVN---ASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVARSW 250
           A + +G TPL +A  +
Sbjct: 108 AYDNDGHTPLHLAAKY 123

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G+  +PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D   G T LHLAA+ GH   + +
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 88  LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
           L++A + G  + V  L+   A+++  D  +G T LHLAA  GH   + +LL         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
                 K      +I        HL  L+     GH+E V++LL  GA V+   +V   G
Sbjct: 68  ------KHGADVNAIDIXGSTPLHLAALI-----GHLEIVEVLLKHGADVN---AVDTWG 113
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS 260
            T LH AA  G+ +  ++L+  GA + A++  G T   ++       L +IL 
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  ++ G T L  A   GH E+V  L+   A+++ A+ + G T LHLAA+ GH   + +
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNASDHVGW--TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH EVV  L+   A+++  D+ NG T LHLAA  GH   + +
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
           GH+E V++LL  GA V+   S+   G T LH AA  G+ +  ++L+  GA + A + NG+
Sbjct: 58  GHLEIVEVLLKNGADVNADDSL---GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Query: 242 TPLMVA 247
           TPL +A
Sbjct: 115 TPLHLA 120

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N ++  G T L  A + GH E+V  L+   A+++ +D  +G T LHLAA  GH   + +
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL  + GH+E V++LL  GA V+   S+   G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAAHFGHLEIVEVLLKNGADVNAKDSL---GVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVA 247
           A +++G+TPL +A
Sbjct: 108 ASDSHGFTPLHLA 120

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+   A+++  D  NG T LHLAA  GH   + +
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
           GH+E V++LL  GA V+ Y ++   GST LH AA  G+ +  ++L+  GA + A++ NG 
Sbjct: 58  GHLEIVEVLLKNGADVNAYDTL---GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI 114
Query: 242 TPLMVA 247
           TPL +A
Sbjct: 115 TPLHLA 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ A R G   E + L+     +      GV  +PLH +A +GH EIV +L++ G D
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N R+  G+T L  A   GH E+V  L+ Y A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 18/211 (8%)
Query: 51  RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           + SPLH +A  GH +I  +L+++G +I+  +   +T LM+A ++ H E V  LI   A +
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSV---------PNAWNRLRKKSNKTGS 161
              D   G T LHLAA  GH   ++ LL++    V         P  W    K  +    
Sbjct: 71  DPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 162 IL----EFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAAC 216
           +L    + + R     + LH    +G V+  ++LL   A+  +  +V+  G + LH AA 
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKCDLHAVNIHGDSPLHIAAR 186
Query: 217 GGNAQCCQILIAMGASLTAENANGWTPLMVA 247
                C  + ++  + +T +N  G TPL  A
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA-SL 233
           L+    N H+E+V+ L+  GA V         GST LH AA  G+ +  Q L++ G   +
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPK---DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 234 TAENANGWTPLMVARSWHRTGLEDIL 259
             ++  GWTP++ A  +    L  +L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLL 130

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AA  G   E + L+     +      G+  +PLH +AA G  EIV +L+++G D
Sbjct: 7   GKKLLEAAAAGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGAD 64
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D   G T LHLAAL+G    + +
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQLEIVEV 123
Query: 137 LL 138
           LL
Sbjct: 124 LL 125

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NG +E V++LL  GA V+   +   AG T LH AA  G+ +  ++L+  GA + 
Sbjct: 43  LHLAAANGQLEIVEVLLKNGADVN---ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 235 AENANGWTPLMVA 247
           A +  GWTPL +A
Sbjct: 100 AYDRAGWTPLHLA 112

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ A R G   E + L+     +      GV  +PLH +A +GH EIV +L++ G D
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G+T L  A   GH E+V  L+ Y A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ A R G   E + L+     +      GV  +PLH +A +GH EIV +L++ G D
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G+T L  A   GH E+V  L+ Y A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LL  T  G  + V++L+  GA V+   ++  AG T LH AA  G+ +  ++L+  GA + 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVN---AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
           A ++ G TPL +A
Sbjct: 75  ASDSWGRTPLHLA 87

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           N+PLH +A  GH E V  L+  G D+N R+  G T L  A ++GH E+V  L+   A+++
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLA 139
            A   +G T  HLA  NGH   ++LL A
Sbjct: 70  -ARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
           NGH E V+ LL  GA V+   + S  G+T LH AA  G+A+  ++L+A GA + A + +G
Sbjct: 19  NGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 241 WTPLMVAR 248
            TP  +A+
Sbjct: 76  NTPEHLAK 83

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
           +G S G S +  +L+ AA+ GD++  K L        R    G +++PLH++A      +
Sbjct: 3   MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSV 61
Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V  L++ G D++ ++  G   L  AC +GH+EV   L+ + A ++ AD L   T LH AA
Sbjct: 62  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAA 120
Query: 127 LNGHSRCIRLLL 138
             G     +LLL
Sbjct: 121 AKGKYEICKLLL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G +L+ AAR G   E + L+     +      G   +PLH +A  GH EIV +L++ G D
Sbjct: 15  GRKLLEAARAGQDDEVRILMANGADVNAADNTGT--TPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           ++  +  G T L  A   GH E+V  L+   A+++  D  +G T LHLAA  G+   + +
Sbjct: 73  VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEV 131
Query: 137 LL 138
           LL
Sbjct: 132 LL 133

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 176 LHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   +GH+E V++LL  GA V    +    G T LH AA  G+ +  ++L+  GA + 
Sbjct: 51  LHLAAYSGHLEIVEVLLKHGADVD---ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVARSW 250
           A +++G TPL +A  W
Sbjct: 108 AMDSDGMTPLHLAAKW 123

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 40  PRLVRY-STFGVRNS----PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH 94
           P L+++ +  G RN+    PLH +  QGH ++V  L++S    N ++  G T L+ AC  
Sbjct: 103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162
Query: 95  GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           GH E+V  L+ + A+I+ ++   G TALH A +  H   + LLL
Sbjct: 163 GHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLL 205

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 25/132 (18%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
           +G + LH+AAL+G +  I LLL               K     G+      R     V L
Sbjct: 85  DGSSPLHVAALHGRADLIPLLL---------------KHGANAGA------RNADQAVPL 123
Query: 177 HLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
           HL    GH + V+ LLD  A  ++      +G+T L YA  GG+ +   +L+  GAS+ A
Sbjct: 124 HLACQQGHFQVVKCLLDSNAKPNKK---DLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 236 ENANGWTPLMVA 247
            N  G T L  A
Sbjct: 181 SNNKGNTALHEA 192

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 10  SFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSL 69
           + G S +  +L+ AA+ GD++  K L        R    G +++PLH++A      +V  
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 70  LIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG 129
           L++ G D++ ++  G   L  AC +GH+EV   L+ + A ++ AD L   T LH AA  G
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKG 119
Query: 130 HSRCIRLLL 138
                +LLL
Sbjct: 120 KYEICKLLL 128

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G+  +PLH +A   H EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDKVGL--TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G+T L     +GH E+V  L+ + A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G  N+PLH +A   H EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 55  LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           LH ++ +G    V  L+++G D N++++ G T L +AC HGH +VV  L+ +KA ++   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 115 YLNGGTALHLAALNGHSRCIRLLLA 139
           Y N  + LH AA NGH   ++LLL+
Sbjct: 74  YQN-DSPLHDAAKNGHVDIVKLLLS 97

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 24  ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
           A  G L E K  +  +  L   +    R + LH++ + GH EIV  L++ GV +N ++  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
           G + L  A   G  E+V  L++  A+++  +  NG T LH AA  N H   + LL     
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
           P   +                 +D    H          G+++ V +LL   AS +    
Sbjct: 132 PDAKD----------------HYDATAMH-----RAAAKGNLKMVHILLFYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
               G+T LH A      +  + L+  GAS+  EN    TPL VA+     GL  IL   
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRL 223
Query: 263 PEGR 266
            EG 
Sbjct: 224 AEGE 227

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G+  +PLH +A  GH EIV +L++ G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNALDEDGL--TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+V  L+ + A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 12  GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI 71
           G S +  +L+ AA+ GD++  K L        R    G +++PLH++A      +V  L+
Sbjct: 6   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS 131
           + G D++ ++  G   L  AC +GH+EV   L+ + A ++ AD L   T LH AA  G  
Sbjct: 65  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKY 123
Query: 132 RCIRLLL 138
              +LLL
Sbjct: 124 EICKLLL 130

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 24  ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
           A  G L E K  +  +  L   +    R + LH++ + GH EIV  L++ GV +N ++  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
           G + L  A   G  E+V  L++  A+++  +  NG T LH AA  N H   + LL     
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
           P   +                 +D    H          G+++ V +LL   AS +    
Sbjct: 132 PDAKD----------------HYDATAMH-----RAAAKGNLKMVHILLFYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
               G+T LH A      +  + L+  GAS+  EN    TPL VA+     GL  IL   
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRL 223
Query: 263 PEGR 266
            EG 
Sbjct: 224 AEGE 227

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 19/251 (7%)
Query: 18  ERLVSAARDGDLQEAKALLEYNPRLVR-YSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           + L+ AAR G+ ++  ALL   P  V  +++ G +++PLH +A      IV LL++ G D
Sbjct: 26  DELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           ++ ++  G   L  AC +GH+EV   L+ + A ++  D L   T LH AA         L
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSL 142
Query: 137 LL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
           LL   AD  P++ N   +       T  + E     F    LL       +  V+  L L
Sbjct: 143 LLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 194 GASVSEYLSVSGAGS--TSLHYAACG---GNAQCCQILIAMGASLTAENANGWTPLMVAR 248
                E ++     S  T+LH A         Q  ++L+  GA++  +N +  TPL VA 
Sbjct: 201 -----EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255
Query: 249 SWHRTGLEDIL 259
                 + ++L
Sbjct: 256 ERAHNDVMEVL 266

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 24  ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
           A  G L+E K  +  +  L   +    R + LH++ + GH EIV  L++ GV +N ++  
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
           G + L  A   G  E+V  L+   A ++  +  NG T LH AA  N H   + LL     
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
           P   +                     ++    +      G+++ + +LL   AS +    
Sbjct: 133 PDAKD---------------------HYEATAMHRAAAKGNLKMIHILLYYKASTN---I 168
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
               G+T LH A      +  ++L++ GAS+  EN    TPL VA+     GL  IL   
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG----GLGLILKRM 224
Query: 263 PEG 265
            EG
Sbjct: 225 VEG 227

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 24  ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
           A  G L+E K  +  +  L   +    R + LH++ + GH EIV  L++ GV +N ++  
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
           G + L  A   G  E+V  L+   A ++  +  NG T LH AA  N H   + LL     
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
           P   +                     ++    +      G+++ + +LL   AS +    
Sbjct: 132 PDAKD---------------------HYEATAMHRAAAKGNLKMIHILLYYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
               G+T LH A      +  ++L++ GAS+  EN    TPL VA+     GL  IL   
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG----GLGLILKRM 223
Query: 263 PEG 265
            EG
Sbjct: 224 VEG 226

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L      +     +G  ++PLH +A  GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILTANGADVNANDYWG--HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N     G+T L  A    H E+V  L+ + A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+        ++T  +  SPLH +A  GH     +L+ +GV 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
            + R    +T L  A   GH  +V  L+ + A+++  D L   TALH A  + H   + L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVEL 118
Query: 137 LL 138
           L+
Sbjct: 119 LI 120

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +     +G+  +PL+ + A GH EIV +L+++G D
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGAD 72
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
           +N  +  G T L  A   GH E+   L+ + A+++  D   G TA  ++  NG+     +
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-GKTAFDISIGNGNEDLAEI 131
Query: 137 L 137
           L
Sbjct: 132 L 132

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 52  NSPLHYSAAQGH----HEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
           ++PLH +  QG+    H +V+L  + G ++++ N   QT L  A       VV  L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNR-----------LRKKS 156
           A+    D  +G TA HLA  +    C+R LL    P   +   R           +  + 
Sbjct: 70  ASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 157 NKTGSILEFDERYFHLEV---------LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
            +T  +L   ER   ++          L+H   N  +  VQLLL  GA+V+  +    +G
Sbjct: 129 QETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY---SG 183
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
           S++LH A+  G     + L+  GA  + +N +  TPLMVARS
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           SPLH +   GH   V +L++ G  +N       T L  AC  G W+ V  L+ + A++  
Sbjct: 38  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
              L   + +H AA  GH  C+  L+A                    G+I   D +  HL
Sbjct: 98  ESDL--ASPIHEAARRGHVECVNSLIA------------------YGGNI---DHKISHL 134
Query: 173 EVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMG 230
              L+L   N     V+ LL+ GA V++     G G  S LH  A   + +   +L+  G
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQ-----GKGQDSPLHAVARTASEELACLLMDFG 189
Query: 231 ASLTAENANGWTPL 244
           A   A+NA G  P+
Sbjct: 190 ADTQAKNAEGKRPV 203

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 62  GHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTA 121
           G  E V  L+E G DIN  N  G TAL QAC   + ++V  L+   ANI++ D   G   
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIP 109
Query: 122 LHLAALNGHSRCIRLLLAD--YIPSVPNAWN-------------RLRKKSNKTGSILEF- 165
           LH AA  G+      L++   ++ +V +  +              L+ + N+ G  +E  
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 166 --DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
             +E    L        +GH+  V+               + +G T+LH AA  G  +  
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRH--------------AKSGGTALHVAAAKGYTEVL 215
Query: 224 QILIAMGASLTAENANGWTPLMVARSWHR 252
           ++LI     +  ++ +GWTPL  A  W +
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           SPLH +   GH   V +L++ G  +N       T L  AC  G W+ V  L+ + A++  
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
              L   + +H AA  GH  C+  L+A                    G+I   D +  HL
Sbjct: 154 ESDL--ASPIHEAARRGHVECVNSLIA------------------YGGNI---DHKISHL 190
Query: 173 EVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMG 230
              L+L   N     V+ LL+ GA V++     G G  S LH      + +   +L+  G
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQ-----GKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 231 ASLTAENANGWTPL 244
           A   A+NA G  P+
Sbjct: 246 ADTQAKNAEGKRPV 259

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 34/206 (16%)
Query: 86  TALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
           + + +A  HGH   +  LI   +  NI  AD++   + LH A L GH  C+++LL     
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHV---SPLHEACLGGHLSCVKILL----- 112
Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV 203
                         K G+ +      +H   L +  ++G  + V LLL  GASV     +
Sbjct: 113 --------------KHGAQVNGVTADWHTP-LFNACVSGSWDCVNLLLQHGASVQPESDL 157
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA-RSWHRTGLEDILSTQ 262
           +    + +H AA  G+ +C   LIA G ++  + ++  TPL +A  +  R  ++ +L   
Sbjct: 158 A----SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL--- 210
Query: 263 PEGRLEVLPSPYLALPLMSIVKIARE 288
            E   +V        PL ++V+ A E
Sbjct: 211 -ESGADVNQGKGQDSPLHAVVRTASE 235

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 28/256 (10%)
Query: 13  CSASGER--------LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH 64
            S+SG R        L+ A ++ D+   + LLE     V +       +PLH +      
Sbjct: 14  TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSRE 72
Query: 65  EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL 124
           +IV LL+  G D  LR   G T  + A   G  +++   +   A+++  D+  G TA   
Sbjct: 73  DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFME 131
Query: 125 AALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHV 184
           AA+ G  + ++ L          A   LR+K+ +    L    R      L+     GHV
Sbjct: 132 AAVYGKVKALKFLYK------RGANVNLRRKTKEDQERL----RKGGATALMDAAEKGHV 181
Query: 185 ESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ----ILIAMGASLTAENAN 239
           E +++LLD +GA V+   +    G  +L +A    +    +    +L+  GA +      
Sbjct: 182 EVLKILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 240 GWTPLMVARSWHRTGL 255
           G TPL++A      GL
Sbjct: 239 GKTPLILAVEKKHLGL 254

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           SPLH++  +G   +V +LI  G  IN+ N    T L  A  HGH ++V  L+ YKA+I+ 
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLAD 140
            +  +G   LH A   G  +    L+A+
Sbjct: 101 VNE-HGNVPLHYACFWGQDQVAEDLVAN 127

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 20/241 (8%)
Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A ++ D+   + LLE     V +       +PLH +      +IV LL+  G D  L
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
           R   G T  + A   G  +++   +   A+++  D+  G TA   AA+ G  + ++ L  
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYK 126
Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLD-LGASVS 198
                   A   LR+K+ +    L    R      L+     GHVE +++LLD +GA V+
Sbjct: 127 ------RGANVNLRRKTKEDQERL----RKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQ----ILIAMGASLTAENANGWTPLMVARSWHRTG 254
              +    G  +L +A    +    +    +L+  GA +      G TPL++A      G
Sbjct: 177 ---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233
Query: 255 L 255
           L
Sbjct: 234 L 234

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           SPLH++  +G   +V +LI  G  IN+ N    T L  A  HGH ++V  L+ YKA+I+ 
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLAD 140
            +  +G   LH A   G  +    L+A+
Sbjct: 96  VNE-HGNVPLHYACFWGQDQVAEDLVAN 122

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PL ++AA G   +V  L+++G D  L     ++AL  AC  G+ ++V  L+    +++ 
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
            D+ NGGT L  A    H +C+++LL
Sbjct: 98  YDW-NGGTPLLYAVHGNHVKCVKMLL 122

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PL ++AA G   +V  L+++G D  L     ++AL  AC  G+ ++V  L+    +++ 
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
            D+ NGGT L  A    H +C+++LL
Sbjct: 96  YDW-NGGTPLLYAVHGNHVKCVKMLL 120

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PL ++AA G   +V  L+++G D  L     ++AL  AC  G+ ++V  L+    +++ 
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
            D+ NGGT L  A    H +C+++LL
Sbjct: 114 YDW-NGGTPLLYAVHGNHVKCVKMLL 138

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
          G++L+ AAR G   E + L+     +      G  ++PLH +A  GH E+V LL+E+G D
Sbjct: 7  GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 77 INLRNYRGQTALMQACQHGH 96
          +N ++  G+TA   +  +G+
Sbjct: 65 VNAQDKFGKTAFDISIDNGN 84

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           +PL +S   G+ E+   L+E G ++N RN  G+T L+ A ++G  E+V  L+   A+I  
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
            D L G TA   A + G    I++ 
Sbjct: 163 RD-LTGLTAEASARIFGRQEVIKIF 186

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 24  ARDGD-------LQEAKALLEYNPRLVR----YSTF--GVRNSPLHYSAAQGHHEIVSLL 70
             DGD       + E KAL     R V+    +  F   ++ +PLH +      EI   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 71  IESGVDINLRNYRGQTALMQACQHGHWEV--VLTLILYKANIH---RADYLNGGTALHLA 125
           + +G D  LR++RG T L  AC+ G      VLT      ++H   +A   NG T LHLA
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 126 ALNGHSRCIRLLLA 139
           +++G+   + LL++
Sbjct: 125 SIHGYLGIVELLVS 138

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 25  RDGD-------LQEAKALLEYNPRLVR----YSTF--GVRNSPLHYSAAQGHHEIVSLLI 71
            DGD       + E KAL     R V+    +  F   ++ +PLH +      EI   L+
Sbjct: 3   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEV--VLTLILYKANIH---RADYLNGGTALHLAA 126
            +G D  LR++RG T L  AC+ G      VLT      ++H   +A   NG T LHLA+
Sbjct: 63  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 127 LNGHSRCIRLLLA 139
           ++G+   + LL++
Sbjct: 123 IHGYLGIVELLVS 135

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G   +PLH +A +GH EIV +L+++G D
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
           +N ++  G+TA   +  +G+ +  L  IL KA
Sbjct: 61  VNAQDKFGKTAFDISIDNGNED--LAEILQKA 90

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           G++L+ AAR G   E + L+     +      G  ++PLH +A  GH E+V LL+E+G D
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 77  INLRNYRGQTALMQACQHGH 96
           +  ++  G+TA   +  +G+
Sbjct: 83  VXAQDKFGKTAFDISIDNGN 102

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY-KANI 110
           ++PLH +A +G+   +   +++ V +N  +  G TAL  AC  GH ++V  L       +
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLA 139
           ++ + L G TALH AA  G++  ++LLLA
Sbjct: 134 NQQNKL-GDTALHAAAWKGYADIVQLLLA 161

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 55/200 (27%)
Query: 50  VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
           + ++PLH++  QGH  +V  L++ G D +L +  G + +  A Q GH  +V  LI    +
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 110 IHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
           +   D  NG T L  AA   HS                                      
Sbjct: 135 VDMMDQ-NGMTPLMWAAYRTHS-------------------------------------- 155
Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
                         V+  +LLL    SV+  L      +T+LH+A   GN     +L+  
Sbjct: 156 --------------VDPTRLLLTFNVSVN--LGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 230 GASLTAENANGWTPLMVARS 249
           GA++ A+N  G + L +A+ 
Sbjct: 200 GANVDAQNIKGESALDLAKQ 219

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQP 263
           +G GST+LHY     NA+C ++L+   AS+   N +G TPL +A+       E++L+   
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261
Query: 264 EGRL 267
            GR 
Sbjct: 262 SGRF 265

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
           G  L SAA  GDL++  +LL+ N  +   + FG        +A Q    G+ EI   L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G + +L++  G   +  A + G  + + TL+ ++A+++  D   G   LHLAA  GH R
Sbjct: 59  RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
            +  L+
Sbjct: 118 VVEFLV 123

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
           ++  L +LL  +L G  + VQ ++     V +    +  G T+LH A C G+ +  + L+
Sbjct: 34  KFNPLALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90
Query: 228 AMGASLTAENANGWTPLMVARS 249
             G ++ A +++GWTPL  A S
Sbjct: 91  QFGVNVNAADSDGWTPLHCAAS 112

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 20  LVSAARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI 77
           L+ A+  G+++  + LLE+  +P ++       R S L  ++  G+ +IV LL+E  VDI
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLLERDVDI 95
Query: 78  NLRNYRGQTALMQACQHGHWEVVLTLILYKANI-HRADYLNGGTALHLAALNGHSRC--- 133
           N+ ++ G T L+ A +  H + V  L+   A++   AD  +G T + LA   G+ +    
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD--SGYTPMDLAVALGYRKVQQV 153
Query: 134 -----IRLLLADYIPSVP 146
                ++L  ++ +P+ P
Sbjct: 154 IENHILKLFQSNLVPADP 171

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
           G+ + V LLL+    ++ Y      G T L YA  G + +C + L+A GA LT E  +G+
Sbjct: 80  GYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 242 TPLMVA 247
           TP+ +A
Sbjct: 137 TPMDLA 142

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 16  SGERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG--------------- 49
           +G+RL  AA  GD+QE + LL            +    ++   FG               
Sbjct: 8   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 67
Query: 50  -VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
            V++    SP+H +A  G  + + +L+E G D+N+ +  G   +  A Q GH  VV + +
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFL 126
Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
             ++++HR D   G T L LA   G    + +L
Sbjct: 127 AAESDLHRRDA-RGLTPLELALQRGAQDLVDIL 158

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
           G  L SAA  GDL++  +LL+ N  +   + FG        +A Q    G+ EI   L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G + +L++  G   +  A + G  + + TL+ ++A+++  D   G   LHLAA  GH R
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
            +  L+
Sbjct: 118 VVEFLV 123

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
           L +LL  +L G  + VQ ++     V +    +  G T+LH A C G+ +  + L+  G 
Sbjct: 38  LALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 232 SLTAENANGWTPLMVARS 249
           ++ A +++GWTPL  A S
Sbjct: 95  NVNAADSDGWTPLHCAAS 112

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 20  LVSAARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI 77
           L+ A+  G+++  + LLE+  +P ++       R S L  ++  G+ +IV LL+E  VDI
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLLERDVDI 95
Query: 78  NLRNYRGQTALMQACQHGHWEVVLTLILYKANI-HRADYLNGGTALHLAALNGHSRC--- 133
           N+ ++ G T L+ A    H + V  L+   A++   AD  +G T + LA   G+ +    
Sbjct: 96  NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD--SGYTPMDLAVALGYRKVQQV 153
Query: 134 -----IRLLLADYIPSVP 146
                ++L  ++ +P+ P
Sbjct: 154 IENHILKLFQSNLVPADP 171

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
           G+ + V LLL+    ++ Y      G T L YA  G + +C + L+A GA LT E  +G+
Sbjct: 80  GYTDIVGLLLERDVDINIY---DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 242 TPLMVA 247
           TP+ +A
Sbjct: 137 TPMDLA 142

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
           G  L SAA  GDL++  +LL+ N  +   + FG        +A Q    G+ EI   L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G + +L++  G   +  A + G  + + TL+ ++A+++  D   G   LHLAA  GH R
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
            +  L+
Sbjct: 118 VVEFLV 123

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 16  SGERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG--------------- 49
           +G+RL  AA  GD+QE + LL            +    ++   FG               
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 50  -VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
            V++    SP+H +A  G  + + +L+E G D+N+ +  G   +  A Q GH  VV + +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFL 120
Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
             ++++HR D   G T L LA   G    + +L
Sbjct: 121 AAESDLHRRDA-RGLTPLELALQRGAQDLVDIL 152

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
           G  L SAA  GDL++  +LL+ N  +   + FG        +A Q    G+ EI   L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G + +L++  G   +  A + G  + + TL+ ++A+++  D   G   LHLAA  GH R
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
            +  L+
Sbjct: 118 VVEFLV 123

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 52  NSPLHYSAAQGHHEIVSLLIESGV--------------------------DIN--LRNYR 83
           N+ LHYS +  +  +V  L++SGV                          DI   L+ +R
Sbjct: 112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR 171
Query: 84  -----------GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
                      GQTALM A  HG  +VV  L+  +A+++  D  +G TAL  A  +GH  
Sbjct: 172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKE 230
Query: 133 CIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN 181
              LLLA     VP+    L  +   T  ++  D     +  +L+  +N
Sbjct: 231 IAGLLLA-----VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
           L +LL   L G +E VQ  +     +++    +  G T+LH A CG N      LI  GA
Sbjct: 22  LVLLLDAALTGELEVVQQAVK---EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 232 SLTAENANGWTPLMVARS 249
           ++ + +++GWTPL  A S
Sbjct: 79  NVNSPDSHGWTPLHCAAS 96

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 20  LVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           L+ AA   D ++ K +L+     V    T G  N+PL+ +      EI   LI+ G DIN
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKA---NIHRADYLNGGTALHLAALNGHSRCIR 135
           L+N    +  + A   G  E++  ++ +     N H      GG AL  AA  GH   ++
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR---YGGNALIPAAEKGHIDNVK 123
Query: 136 LLLAD 140
           LLL D
Sbjct: 124 LLLED 128

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
           G  L SAA  GDL++  +LL+ N  +   + FG        +A Q    G+ EI   L+ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G + +L++  G   +  A + G  + + TL+  +A+++  D   G   LHLAA  GH R
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
            +  L+
Sbjct: 118 VVEFLV 123

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           A ++GDL E K  +     + R    G +  PLHY+A  G  EI+  L+  G DIN  + 
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRK--PLHYAADCGQLEILEFLLLKGADINAPDK 66
Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTAL 122
              T L+ A   GH   V  L+L K         +G TAL
Sbjct: 67  HHITPLLSAVYEGHVSCV-KLLLSKGADKTVKGPDGLTAL 105

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           A ++GDL E K  +     + R    G +  PLHY+A  G  EI+  L+  G DIN  + 
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRK--PLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 83  RGQTALMQACQHGHWEVVLTLI 104
              T L+ A   GH   V  L+
Sbjct: 72  HHITPLLSAVYEGHVSCVKLLL 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-47
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-46
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-44
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-44
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-43
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-41
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-40
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-39
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-39
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-07
2rfa_A	232	Transient receptor potential cation channel subfa	5e-38
2rfa_A	232	Transient receptor potential cation channel subfa	7e-31
2rfa_A	232	Transient receptor potential cation channel subfa	2e-29
2rfa_A	232	Transient receptor potential cation channel subfa	6e-23
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-37
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-34
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-31
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-30
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-26
2etb_A	256	Transient receptor potential cation channel subfam	8e-30
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	9e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	5e-28
2pnn_A	273	Transient receptor potential cation channel subfa	8e-25
2pnn_A	273	Transient receptor potential cation channel subfa	8e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	6e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 5e-47
 Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 34/232 (14%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  A    +L   K LL         +  G   +PLH +A Q   E+   L++ G   N 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
            + +G T L  A Q GH E+V  L+  +AN +  +  +G T LHL A  GH     +L+ 
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIK 299

Query: 139 --ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGA 195
                     +A       + + G               LH+ +  G+++ V+ LL   A
Sbjct: 300 HGVM-----VDA-------TTRMGYTP------------LHVASHYGNIKLVKFLLQHQA 335

Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
            V+     +  G + LH AA  G+     +L+  GAS    +++G TPL +A
Sbjct: 336 DVNA---KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  164 bits (417), Expect = 2e-46
 Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 32/200 (16%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            +PLH ++  GH  IV  L++ G   N+ N + +T L  A + GH EV   L+  KA ++
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
                +  T LH AA  GH+  ++LLL   A+     PN        +   G        
Sbjct: 75  AKAK-DDQTPLHCAARIGHTNMVKLLLENNAN-----PNL-------ATTAGHT------ 115

Query: 169 YFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
                  LH+    GHVE+V  LL+  AS +    ++  G T LH AA  G  +  ++L+
Sbjct: 116 ------PLHIAAREGHVETVLALLEKEASQAC---MTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 228 AMGASLTAENANGWTPLMVA 247
              A   A   NG TPL VA
Sbjct: 167 ERDAHPNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (410), Expect = 3e-45
 Identities = 66/229 (28%), Positives = 89/229 (38%), Gaps = 34/229 (14%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AAR+G ++   ALLE        +  G   +PLH +A  G   +  LL+E     N    
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
            G T L  A  H + ++V  L+    + H   + NG T LH+AA        R LL    
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVS 198
                  NA          T                LHL    GH E V LLL   A+ +
Sbjct: 237 S-----ANA----ESVQGVT---------------PLHLAAQEGHAEMVALLLSKQANGN 272

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
                + +G T LH  A  G+     +LI  G  + A    G+TPL VA
Sbjct: 273 L---GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (406), Expect = 1e-44
 Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 34/232 (14%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  AA+ G ++ A+ LLE +         G   +PLH +    + +IV LL+  G   + 
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 207

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
             + G T L  A +    EV  +L+ Y  + +      G T LHLAA  GH+  + LLL 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLS 266

Query: 139 --ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGA 195
             A+      N       KS  T                LHL    GHV    +L+  G 
Sbjct: 267 KQAN-----GNL----GNKSGLT---------------PLHLVAQEGHVPVADVLIKHGV 302

Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
            V      +  G T LH A+  GN +  + L+   A + A+   G++PL  A
Sbjct: 303 MVDA---TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (376), Expect = 2e-40
 Identities = 65/247 (26%), Positives = 98/247 (39%), Gaps = 41/247 (16%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
              G +     L  AA+   ++ A++LL+Y       S  G   +PLH +A +GH E+V+
Sbjct: 209 AWNGYTP----LHIAAKQNQVEVARSLLQYGGSANAESVQG--VTPLHLAAQEGHAEMVA 262

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN 128
           LL+    + NL N  G T L    Q GH  V   LI +   +       G T LH+A+  
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHY 321

Query: 129 GHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHV 184
           G+ + ++ LL   AD      NA    + K   +                LH     GH 
Sbjct: 322 GNIKLVKFLLQHQAD-----VNA----KTKLGYS---------------PLHQAAQQGHT 357

Query: 185 ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL---IAMGASLTAENANGW 241
           + V LLL  GAS +E   VS  G+T L  A   G      +L       + +   + +  
Sbjct: 358 DIVTLLLKNGASPNE---VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 414

Query: 242 TPLMVAR 248
           +      
Sbjct: 415 SFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (329), Expect = 7e-34
 Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 32/178 (17%)

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
           G+        G T L  A   GH  +V  L+   A+ + ++     T LH+AA  GH+  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEV 62

Query: 134 IRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQL 189
            + LL   A       NA    + K ++T                LH     GH   V+L
Sbjct: 63  AKYLLQNKAK-----VNA----KAKDDQT---------------PLHCAARIGHTNMVKL 98

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           LL+  A+ +     + AG T LH AA  G+ +    L+   AS       G+TPL VA
Sbjct: 99  LLENNANPNL---ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  121 bits (306), Expect = 1e-30
 Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 40/222 (18%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  AA++G  +    LL         +  G   +PLH  A +GH  +  +LI+ GV ++ 
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSG--LTPLHLVAQEGHVPVADVLIKHGVMVDA 306

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
               G T L  A  +G+ ++V  L+ ++A+++      G + LH AA  GH+  + LLL 
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLK 365

Query: 139 --ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGA 195
             A      PN  +        T                L +    G++    +L  +  
Sbjct: 366 NGAS-----PNEVS----SDGTT---------------PLAIAKRLGYISVTDVLKVVTD 401

Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
             S  L       +                ++ +      E 
Sbjct: 402 ETSFVLVSDKHRMSFPETV---------DEILDVSEDEGEEL 434

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  161 bits (410), Expect = 8e-47
 Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 44/233 (18%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           AA  G     + L+      N     + +      PLH +   GH   V +L++ G  +N
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVS------PLHEACLGGHLSCVKILLKHGAQVN 119

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
                  T L  AC  G W+ V  L+ + A++      +  + +H AA  GH  C+  L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLI 177

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
               +      +           T                L+L   N     V+ LL+ G
Sbjct: 178 AYGGN-----IDHKI----SHLGT---------------PLYLACENQQRACVKKLLESG 213

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           A V++         + LH      + +   +L+  GA   A+NA G  P+ + 
Sbjct: 214 ADVNQGKG----QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  150 bits (382), Expect = 8e-43
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 34/199 (17%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           SP+H +A  GH   +  LI  G  +N+      + L +AC  GH   V  L+ + A ++ 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
               +  T L  A ++G   C+ LLL   A              +    +          
Sbjct: 121 VTA-DWHTPLFNACVSGSWDCVNLLLQHGAS-----VQP-----ESDLAS---------- 159

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                 +H     GHVE V  L+  G ++           T L+ A       C + L+ 
Sbjct: 160 -----PIHEAARRGHVECVNSLIAYGGNIDH---KISHLGTPLYLACENQQRACVKKLLE 211

Query: 229 MGASLTAENANGWTPLMVA 247
            GA +        +PL   
Sbjct: 212 SGADVNQGK-GQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (337), Expect = 2e-36
 Identities = 45/233 (19%), Positives = 79/233 (33%), Gaps = 45/233 (19%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
            +       +  L+           +         P       G       L+ + +  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGS-KPAGPRDFPGI-----RLLSNPLMGD 55

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
             +    + + +A  HGH   +  LI     ++     +  + LH A L GH  C+++LL
Sbjct: 56  AVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILL 112

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
              A       N           T                L    ++G  + V LLL  G
Sbjct: 113 KHGAQ-----VNG----VTADWHT---------------PLFNACVSGSWDCVNLLLQHG 148

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           ASV          ++ +H AA  G+ +C   LIA G ++  + ++  TPL +A
Sbjct: 149 ASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (323), Expect = 3e-34
 Identities = 52/219 (23%), Positives = 75/219 (34%), Gaps = 45/219 (20%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           A   G L   K LL++    N     + T      PL  +   G  + V+LL++ G  + 
Sbjct: 99  ACLGGHLSCVKILLKHGAQVNGVTADWHT------PLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
             +    + + +A + GH E V +LI Y  NI      + GT L+LA  N    C++ LL
Sbjct: 153 PESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLL 210

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
              AD      N       K   +                LH        E   LL+D G
Sbjct: 211 ESGAD-----VNQ-----GKGQDSP---------------LHAVVRTASEELACLLMDFG 245

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
           A        +  G   +              L   GASL
Sbjct: 246 ADTQA---KNAEGKRPVELVPPESPLAQL-FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  113 bits (285), Expect = 8e-29
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 31/152 (20%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            SP+H +A +GH E V+ LI  G +I+ +     T L  AC++     V  L+   A+++
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
           +       + LH            LL+   AD       A N       K          
Sbjct: 218 QGK--GQDSPLHAVVRTASEELACLLMDFGAD-----TQAKN----AEGKR--------- 257

Query: 169 YFHLEVLLHL-TLNGHVESVQLLLDLGASVSE 199
                  + L      +  +  L   GAS+ +
Sbjct: 258 ------PVELVPPESPLAQL-FLEREGASLPK 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  155 bits (395), Expect = 1e-44
 Identities = 47/200 (23%), Positives = 68/200 (34%), Gaps = 14/200 (7%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVD---INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
           ++ LH +    H   +  L+        ++L+N  GQTAL  A   G    V  L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
            +  A+   G TALHLA       C  +LL       P   +             +    
Sbjct: 70  GVLVAER-GGHTALHLACRVRAHTCACVLLQ------PRPSHPRDASDTYLTQSQDCTPD 122

Query: 169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
             H    +    N   E      D    +      +  G T LH A    +A+  ++L  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 229 MGASLTAENAN-GWTPLMVA 247
            GA L       G TPL +A
Sbjct: 180 AGADLNKPEPTCGRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  138 bits (349), Expect = 5e-38
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 45/214 (21%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQT--------------ALMQACQHGHW 97
           ++ LH +     H    +L++                            A + +  +   
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 98  EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRK 154
           E       ++  +   +Y +G T LH+A ++  +  +RLL    AD      N       
Sbjct: 139 EEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGAD-----LNK------ 186

Query: 155 KSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHY 213
                G               LHL         ++LLL  GA  +        G T L  
Sbjct: 187 PEPTCGRTP------------LHLAVEAQAASVLELLLKAGADPTA---RMYGGRTPLGS 231

Query: 214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           A    N    ++L A GA    +  +  +P   +
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  137 bits (347), Expect = 9e-38
 Identities = 47/240 (19%), Positives = 72/240 (30%), Gaps = 38/240 (15%)

Query: 23  AARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLR 80
           A           LL +      +         + LH +A  G    V  L  +G  + + 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKANIHRAD------------YLNGGTALHLAALN 128
              G TAL  AC+         L+  + +  R                       + +  
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESV 187
                      D+   +  A N        T                LH+  ++   E V
Sbjct: 135 NPENEEEPRDEDWRLQL-EAEN----YDGHT---------------PLHVAVIHKDAEMV 174

Query: 188 QLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           +LL D GA +++       G T LH A     A   ++L+  GA  TA    G TPL  A
Sbjct: 175 RLLRDAGADLNK--PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 2e-25
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           A    D +  + L +     N       T G   +PLH +       ++ LL+++G D  
Sbjct: 165 AVIHKDAEMVRLLRDAGADLN---KPEPTCG--RTPLHLAVEAQAASVLELLLKAGADPT 219

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            R Y G+T L  A    +  +   L  + A        +  +    +  +  S       
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG-DKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.5 bits (249), Expect = 6e-24
 Identities = 38/189 (20%), Positives = 53/189 (28%), Gaps = 43/189 (22%)

Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKAN---IHRADYLNGGTALHLAALNGHSRC 133
                  G TAL  A  H H   +  L+ + A    +   +   G TALHLAA+ G +  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEAST 60

Query: 134 IRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQL 189
           +  L    A              ++   T                LHL           +
Sbjct: 61  VEKLYAAGAG-----VLV----AERGGHT---------------ALHLACRVRAHTCACV 96

Query: 190 LLDLGASVS----EYLSVSGAGSTS-------LHYAACGGNAQCCQILIAMGASLTAENA 238
           LL    S      +         T           +      +           L AEN 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 239 NGWTPLMVA 247
           +G TPL VA
Sbjct: 157 DGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 6/53 (11%), Positives = 13/53 (24%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
           PL  +  + +  +  LL   G           +    +      +       Y
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  152 bits (386), Expect = 7e-44
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 31/200 (15%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            SPLH +A  GH +I  +L+++G +I+  +   +T LM+A ++ H E V  LI   A + 
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             D   G T LHLAA  GH   ++ LL      +    N     +     T         
Sbjct: 72  PKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDV----NC----QDDGGWT--------- 113

Query: 169 YFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
                  +   T   HV+ V+LLL  G+ ++         +  LH+AA  G     +IL+
Sbjct: 114 ------PMIWATEYKHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSGCVDIAEILL 164

Query: 228 AMGASLTAENANGWTPLMVA 247
           A    L A N +G +PL +A
Sbjct: 165 AAKCDLHAVNIHGDSPLHIA 184

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  151 bits (383), Expect = 2e-43
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 35/230 (15%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AA  G +     L++    +   S      +PL  +A   H E V  LI++G  ++ ++ 
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

Query: 83  RGQTALMQACQHGHWEVVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLL--- 138
            G T L  A + GH+EVV  L+     +++  D   G T +  A    H   ++LLL   
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKG 134

Query: 139 ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASV 197
           +D      N         +   +I             LH    +G V+  ++LL     +
Sbjct: 135 SD-----INI-------RDNEENI------------CLHWAAFSGCVDIAEILLAAKCDL 170

Query: 198 SEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
                V+  G + LH AA      C  + ++  + +T +N  G TPL  A
Sbjct: 171 HA---VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (326), Expect = 3e-35
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESG-VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           ++ LH +A +GH+E+V  L+ +G +D+N ++  G T ++ A ++ H ++V  L+   ++I
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
           +  D       LH AA +G      +LL    D      +A N        +        
Sbjct: 138 NIRDN-EENICLHWAAFSGCVDIAEILLAAKCD-----LHAVN----IHGDS-------- 179

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                   LH+       + V L L   + V+     +  G T L  A+          +
Sbjct: 180 -------PLHIAARENRYDCVVLFLSRDSDVTL---KNKEGETPLQCASLNSQVWSALQM 229

Query: 227 IAMGA 231
                
Sbjct: 230 SKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  120 bits (304), Expect = 4e-32
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 75  VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI 134
           ++  + +   ++ L  A + GH ++   L+   ANI      +  T L  AA N H   +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAV 60

Query: 135 RLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLL 190
           + L+   A       +     +     T                LHL    GH E VQ L
Sbjct: 61  KYLIKAGAL-----VDP----KDAEGSTC---------------LHLAAKKGHYEVVQYL 96

Query: 191 LDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           L  G            G T + +A    +    ++L++ G+ +   +      L  A
Sbjct: 97  LSNGQMDVN--CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA 151

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AA  G +  A+ LL     L   +  G  +SPLH +A +  ++ V L +    D+ L+N 
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHG--DSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208

Query: 83  RGQTALMQACQHGHWEVVLTLILYKAN 109
            G+T L  A  +      L +     +
Sbjct: 209 EGETPLQCASLNSQVWSALQMSKALQD 235

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  149 bits (379), Expect = 1e-43
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 33/195 (16%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVD-INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
            +H  AAQG  + +   +  G + +N  + RG T L+ A   G  E V  L+ + A+ H 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
                  +AL LA+  G++  + LLL    D      N ++     +  T          
Sbjct: 65  LAK-ERESALSLASTGGYTDIVGLLLERDVD-----INIYD----WNGGTP--------- 105

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                 L       HV+ V+ LL  GA ++     + +G T +  A   G  +  Q++  
Sbjct: 106 ------LLYAVRGNHVKCVEALLARGADLTT---EADSGYTPMDLAVALGYRKVQQVIEN 156

Query: 229 MGASLTAENANGWTP 243
               L   N     P
Sbjct: 157 HILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  118 bits (299), Expect = 4e-32
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 33/169 (19%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKAN-IHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
              ++ Q    G  + +   +    N +++ D   G T L  A+  G    +R LL   A
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVS 198
           D     P+       K  ++                L L +  G+ + V LLL+    ++
Sbjct: 61  D-----PHILA----KERESA---------------LSLASTGGYTDIVGLLLERDVDIN 96

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
            Y      G T L YA  G + +C + L+A GA LT E  +G+TP+ +A
Sbjct: 97  IY---DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  111 bits (281), Expect = 2e-29
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A+  G+++  + LLE+       +      S L  ++  G+ +IV LL+E  VDIN+
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKER--ESALSLASTGGYTDIVGLLLERDVDINI 97

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            ++ G T L+ A +  H + V  L+   A++      +G T + LA   G+ +  +++ 
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.8 bits (211), Expect = 1e-19
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  A+  G       LLE +  +  Y   G   +PL Y+    H + V  L+  G D+  
Sbjct: 73  LSLASTGGYTDIVGLLLERDVDINIYDWNG--GTPLLYAVRGNHVKCVEALLARGADLTT 130

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
               G T +  A   G+ +V   +  +   + +++      
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL-VPAD 170

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  151 bits (384), Expect = 1e-43
 Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 49/241 (20%)

Query: 23  AARDGDLQEAKALLEY--------NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESG 74
           A   G+L     L+          +       T      PLH +       +V LL+ +G
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT------PLHLAVITTLPSVVRLLVTAG 69

Query: 75  VDINLRNYRGQTALMQACQHGHWEVVLTLILYKA----NIHRADYLNGGTALHLAALNGH 130
                 +  GQTA   AC+H     +  L+   A    ++   +Y +G TALH+A     
Sbjct: 70  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTEC 128

Query: 131 SRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVES 186
              ++LLL   AD      +A +    KS ++                L     N  +  
Sbjct: 129 QETVQLLLERGAD-----IDAVD---IKSGRS---------------PLIHAVENNSLSM 165

Query: 187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMV 246
           VQLLL  GA+V+       +GS++LH A+  G     + L+  GA  + +N +  TPLMV
Sbjct: 166 VQLLLQHGANVNA---QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

Query: 247 A 247
           A
Sbjct: 223 A 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  147 bits (374), Expect = 5e-42
 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 31/204 (15%)

Query: 52  NSPLHYSAAQGHHEIVSLLIE----SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
           ++PLH +  QG+   V  L+      G ++++ N   QT L  A       VV  L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
           A+    D  +G TA HLA  +    C+R LL   A     +  A    R     T     
Sbjct: 70  ASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EA----RNYDGLT----- 118

Query: 165 FDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
                      LH+       E+VQLLL+ GA +        +G + L +A    +    
Sbjct: 119 ----------ALHVAVNTECQETVQLLLERGADIDA--VDIKSGRSPLIHAVENNSLSMV 166

Query: 224 QILIAMGASLTAENANGWTPLMVA 247
           Q+L+  GA++ A+  +G + L  A
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  132 bits (336), Expect = 1e-36
 Identities = 42/189 (22%), Positives = 63/189 (33%), Gaps = 35/189 (18%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESG----VDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
            +  H +        +  L++S     +D+  RNY G TAL  A      E V  L+   
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
           A+I   D  +G + L  A  N     ++LLL   A+      NA       S  +     
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-----VNAQM----YSGSS----- 185

Query: 165 FDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
                      LH  +  G +  V+ L+  GA  S     +    T L  A         
Sbjct: 186 ----------ALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRRVIDIL 232

Query: 224 QILIAMGAS 232
           +      AS
Sbjct: 233 RGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  104 bits (263), Expect = 3e-26
 Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 35/181 (19%)

Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYK----ANIHRADYLNGGTALHLAALNGHSR 132
               +  G T L  A   G+   V  L+         +   +     T LHLA +     
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPS 60

Query: 133 CIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQ 188
            +RLL+   A      P A      +  +T                 HL   +     ++
Sbjct: 61  VVRLLVTAGAS-----PMA----LDRHGQT---------------AAHLACEHRSPTCLR 96

Query: 189 LLLDLGASVSEYL-SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN-GWTPLMV 246
            LLD  A  +  L + +  G T+LH A      +  Q+L+  GA + A +   G +PL+ 
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156

Query: 247 A 247
           A
Sbjct: 157 A 157

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (258), Expect = 1e-25
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           A      +  + LLE     +   ++        SPL ++       +V LL++ G ++N
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKS-----GRSPLIHAVENNSLSMVQLLLQHGANVN 177

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            + Y G +AL  A   G   +V TL+   A+    +  +  T L +A        +R   
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILRGKA 236

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  153 bits (390), Expect = 4e-43
 Identities = 25/204 (12%), Positives = 64/204 (31%), Gaps = 20/204 (9%)

Query: 52  NSPLHYSAAQGHHEIVSLLIES-----GVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
            +PL  +    + E + L++++      + ++  N +G + L  A      +V +  +  
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 107 KANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGS-ILEF 165
             +++  D       L+L+         + LL             ++      G+ +L  
Sbjct: 234 GIDVNMEDN-EHTVPLYLSVRAAMVLLTKELLQK------TDVFLIQACPYHNGTTVLPD 286

Query: 166 DERYFHLEVLLHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ 224
              +      +         E +QLL +    V         G+               +
Sbjct: 287 RVVWL---DFVPAAADPSKQEVLQLLQEKLDEVVR---SLNTGAGGAVKRKKKAAPAVKR 340

Query: 225 ILIAMGASLTAENANGWTPLMVAR 248
           + +A  A +   + +      V++
Sbjct: 341 MKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (358), Expect = 2e-38
 Identities = 29/214 (13%), Positives = 57/214 (26%), Gaps = 44/214 (20%)

Query: 54  PLHYSAAQG--HHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            LH+    G  + E++ +L++ G     ++   +T LM+A +  + E +  ++    +  
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 112 RAD----YLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
                     G + LH A L          +    D      N  +      +       
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-----VNMED----NEHTV----- 246

Query: 165 FDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEY----------LSVSGAGSTSLHY 213
                      L+L      V   + LL                   L         +  
Sbjct: 247 ----------PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           AA     +  Q+L      +      G    +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKR 330

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (356), Expect = 3e-38
 Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 42/218 (19%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              +H +A +G  + V  LIE+GV   ++N  G TAL  AC+ G  +    L        
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
                 G   +HLA +   +  +  L+                   +             
Sbjct: 81  LWH---GQKPIHLAVMANKTDLVVALVE--------------GAKERGQMPESLLNECDE 123

Query: 172 LEVL--------------LHL---TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYA 214
            EV               LH        ++E +++L+ LGAS +       A  T L  A
Sbjct: 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA---KDKADETPLMRA 180

Query: 215 ACGGNAQCCQILIAM-----GASLTAENANGWTPLMVA 247
               N +   +++          L   N  G + L  A
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (311), Expect = 7e-32
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 57/210 (27%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
             P+H +      ++V  L+E   +       GQ       +    EV       +   H
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREVN------EIGSH 132

Query: 112 RADYLNGGTALHLAALNG--HSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFD 166
                 G TALH     G  +   I++L+   A      P A +    K+++T       
Sbjct: 133 VKHC-KGQTALHWCVGLGPEYLEMIKILVQLGAS-----PTAKD----KADET------- 175

Query: 167 ERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGA--------GSTSLHYAACG 217
                    L       + E++ L++D         S S          G++ LH+A   
Sbjct: 176 --------PLMRAMEFRNREALDLMMDTVP------SKSSLRLDYANKQGNSHLHWAILI 221

Query: 218 GNAQCCQILIAMGASLTAENANGWTPLMVA 247
                    + MG  +  E+     PL ++
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (304), Expect = 5e-31
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 51/204 (25%)

Query: 68  SLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAAL 127
           S+     ++    +      +  A + G  + V  LI    +    +   G TALHLA  
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACK 62

Query: 128 NGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGH 183
            G     + L            + W+       +                 +HL  +   
Sbjct: 63  FGCVDTAKYLASVGEV-----HSLWH------GQK---------------PIHLAVMANK 96

Query: 184 VESVQLLLDLG----------ASVSEYLSVSGA--------GSTSLHYAACGGNA--QCC 223
            + V  L++             +  +   V+          G T+LH+    G    +  
Sbjct: 97  TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 224 QILIAMGASLTAENANGWTPLMVA 247
           +IL+ +GAS TA++    TPLM A
Sbjct: 157 KILVQLGASPTAKDKADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 92.2 bits (230), Expect = 9e-21
 Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 12/114 (10%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFG-----------VRNSPLHYSAAQGHHEIVSLLI 71
           + R   +   K LL+     +  +              V    +  +A     E++ LL 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
           E   ++      G    ++  +     V    +   A +      +   +  ++
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR-SRARSSAVS 363

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  150 bits (382), Expect = 1e-42
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 39/221 (17%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLR-NYRGQTALMQACQHGHWEVVLTLILYKANI 110
           N  L  +      ++V  L+E G ++N +    G T L  A Q    ++V  L+ + A+ 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
                 NG T   LAA+ G  + ++L L   AD      N           T        
Sbjct: 66  VLRKK-NGATPFLLAAIAGSVKLLKLFLSKGAD-----VNE----CDFYGFT-------- 107

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASV-------SEYLSVSGAGSTSLHYAACGGN 219
                        + G V++++ L   GA+V        +   +   G+T+L  AA  G+
Sbjct: 108 -------AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 220 AQCCQILIA-MGASLTAENANGWTPLMVA-RSWHRTGLEDI 258
            +  +IL+  MGA + A +  G   L+ A  S   + +E I
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  149 bits (379), Expect = 2e-42
 Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 28/237 (11%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A ++ D+   + LLE     V +       +PLH +      +IV LL+  G D  L
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
           R   G T  + A   G  +++   +   A+++  D+  G TA   AA+ G  + ++ L  
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYK 126

Query: 139 --ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLD-LG 194
             A+      N   + ++   +                 L      GHVE +++LLD +G
Sbjct: 127 RGAN-----VNLRRKTKEDQERLRK---------GGATALMDAAEKGHVEVLKILLDEMG 172

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCC----QILIAMGASLTAENANGWTPLMVA 247
           A V+        G  +L +A    +         +L+  GA +      G TPL++A
Sbjct: 173 ADVNA---CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (296), Expect = 2e-30
 Identities = 42/208 (20%), Positives = 66/208 (31%), Gaps = 65/208 (31%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRN----------YRGQTALMQACQHGHWEVVL 101
            +    +A  G  + +  L + G ++NLR             G TALM A + GH EV+ 
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 102 TLILYK-ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG 160
            L+    A+++  D   G  AL  A L+                                
Sbjct: 166 ILLDEMGADVNACDN-MGRNALIHALLSSD------------------------------ 194

Query: 161 SILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA 220
                               +       LLLD GA V+        G T L  A    + 
Sbjct: 195 -------------------DSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHL 232

Query: 221 QCCQILIA-MGASLTAENANGWTPLMVA 247
              Q L+      +   +++G T L++A
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (269), Expect = 1e-26
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 41/181 (22%)

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL-- 138
                  L++A Q+   ++V  L+   AN++  +   G T LH A        + LLL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 139 -ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGAS 196
            AD     P      RKK+  T                  L  + G V+ ++L L  GA 
Sbjct: 62  GAD-----PVL----RKKNGAT---------------PFLLAAIAGSVKLLKLFLSKGAD 97

Query: 197 VSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA----------SLTAENANGWTPLMV 246
           V+E       G T+   AA  G  +  + L   GA                  G T LM 
Sbjct: 98  VNE---CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 247 A 247
           A
Sbjct: 155 A 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 96.0 bits (240), Expect = 1e-22
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 54  PLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK-A 108
            L ++           I  LL++ G D+N+R  RG+T L+ A +  H  +V  L+  +  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            I+  D  +G TAL LA      +   LL 
Sbjct: 245 EINDTDS-DGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 6e-16
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           PL  +  + H  +V  L+E   ++IN  +  G+TAL+ A +    ++   L    A+   
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

Query: 113 AD 114
            D
Sbjct: 282 GD 283

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (377), Expect = 1e-42
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 31/205 (15%)

Query: 52  NSPLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
           +S LH +          E++  +      +N +N   QT L  A      E+   L+   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLL---AD-YIPSVPNAWNRLRKKSNKTGSIL 163
            +    D+  G T LHLA   G    + +L       ++ S+  A N     +  T    
Sbjct: 69  CDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN----YNGHT---- 119

Query: 164 EFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQC 222
                       LHL +++G++  V+LL+ LGA V+     +  G T+LH A    N   
Sbjct: 120 -----------CLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDL 166

Query: 223 CQILIAMGASLTAENANGWTPLMVA 247
             +L+  GA +      G++P  + 
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  146 bits (372), Expect = 6e-42
 Identities = 49/203 (24%), Positives = 71/203 (34%), Gaps = 35/203 (17%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +      EI   L+ +G D  LR++RG T L  AC+ G    V  L       H  
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 114 DYLN-----GGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEF 165
             L      G T LHLA+++G+   + LL+   AD      NA       + +T      
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-----VNAQE---PCNGRT------ 153

Query: 166 DERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ 224
                     LHL     + + V LLL  GA V+    V+  G +         + +  Q
Sbjct: 154 ---------ALHLAVDLQNPDLVSLLLKCGADVNR---VTYQGYSPYQLTWGRPSTRIQQ 201

Query: 225 ILIAMGASLTAENANGWTPLMVA 247
            L  +                  
Sbjct: 202 QLGQLTLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  104 bits (262), Expect = 3e-26
 Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 37/179 (20%)

Query: 81  NYRGQTALMQACQHGH----WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
              G + L  A  H       EV+  +    A ++  +     T LHLA +         
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEA 63

Query: 137 LL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLD 192
           LL    D     P   +        T                LHL    G + SV +L  
Sbjct: 64  LLGAGCD-----PELRD----FRGNT---------------PLHLACEQGCLASVGVLTQ 99

Query: 193 LGASVSEYLSVSGA---GSTSLHYAACGGNAQCCQILIAMGASLTA-ENANGWTPLMVA 247
              +   +  +      G T LH A+  G     ++L+++GA + A E  NG T L +A
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.2 bits (217), Expect = 6e-20
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           + LH +    + ++VSLL++ G D+N   Y+G +            +   L        +
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 113 ADYLNGGTALHLAALNGH 130
                          +  
Sbjct: 213 MLP-ESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 5/49 (10%), Positives = 12/49 (24%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVV 100
            SP   +  +    I   L +  ++        +       +    E  
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (374), Expect = 4e-42
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 33/200 (16%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            +  +   G +E    L+E+G D+   +    T L  A  +   ++V   I   A + + 
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
                 T LH A   GH   +  L+   AD     P+         +  G          
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGAD-----PSL-------IDGEGCS-------- 111

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN-AQCCQILIA 228
                +HL    GH   V  L+  G  V     +   G T L +AA   +     ++L+ 
Sbjct: 112 ----CIHLAAQFGHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDPTRLLLT 164

Query: 229 MGASLTA-ENANGWTPLMVA 247
              S+   +  +  T L  A
Sbjct: 165 FNVSVNLGDKYHKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  140 bits (355), Expect = 2e-39
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 55/194 (28%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH++  QGH  +V  L++ G D +L +  G + +  A Q GH  +V  LI    ++   
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           D  NG T L  AA   HS                                        ++
Sbjct: 139 DQ-NGMTPLMWAAYRTHS----------------------------------------VD 157

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
                         +LLL    SV+         +T+LH+A   GN     +L+  GA++
Sbjct: 158 P------------TRLLLTFNVSVNL--GDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203

Query: 234 TAENANGWTPLMVA 247
            A+N  G + L +A
Sbjct: 204 DAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  116 bits (294), Expect = 1e-30
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 59/219 (26%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  A R G L     L++Y          G   S +H +A  GH  IV+ LI  G D+++
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLIDGEG--CSCIHLAAQFGHTSIVAYLIAKGQDVDM 137

Query: 80  RNYRGQTALMQACQHGHW-EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            +  G T LM A    H  +    L+ +  +++  D  +  TALH A L G         
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG--------- 188

Query: 139 ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVS 198
                                           +  V            + LLL+ GA+V 
Sbjct: 189 --------------------------------NTTV------------ISLLLEAGANVD 204

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
                +  G ++L  A    N      L     +   +N
Sbjct: 205 A---QNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  144 bits (367), Expect = 5e-42
 Identities = 47/194 (24%), Positives = 69/194 (35%), Gaps = 57/194 (29%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            +H  AAQG    ++  IE    IN  +  G T LM A  HG   VV  L+   A+    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
                 +AL LA   G                                         + +
Sbjct: 66  GK-GRESALSLACSKG-----------------------------------------YTD 83

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
           +            V++LLD G  V+EY      G T L YA  G + +C ++L+  GA  
Sbjct: 84  I------------VKMLLDCGVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 234 TAENANGWTPLMVA 247
           T E  +G+  + +A
Sbjct: 129 TIETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  122 bits (310), Expect = 1e-33
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 59/218 (27%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           +   A  G++      +E    +      G   +PL ++AA G   +V  L+++G D  L
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEG--FTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
                ++AL  AC  G+ ++V  L+    +++  D+ NGGT L  A              
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGN---------- 113

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSE 199
                                          H++             V++LL+ GA  + 
Sbjct: 114 -------------------------------HVKC------------VKMLLESGADPTI 130

Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
               + +G  S+  A   G     Q++ +    L    
Sbjct: 131 ---ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
                SA    L  A   G     K LL+    +  Y   G   +PL Y+    H + V 
Sbjct: 66  GKGRESA----LSLACSKGYTDIVKMLLDCGVDVNEYDWNG--GTPLLYAVHGNHVKCVK 119

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           +L+ESG D  +    G  ++  A   G+  V   +  +   + +  
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 205 GAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           GA S S+H  A  G        I     +   +  G+TPLM A
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  148 bits (377), Expect = 7e-42
 Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 35/218 (16%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            +    + + G  E V  L+E G DIN  N  G TAL QAC   + ++V  L+   ANI+
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSI-LEFDE 167
           + D   G   LH AA  G+      L+   A        A        N  G   L+  E
Sbjct: 101 QPDN-EGWIPLHAAASCGYLDIAEYLISQGAH-----VGA-------VNSEGDTPLDIAE 147

Query: 168 RYFHLEVLLHL---------------TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLH 212
                E+L +                      ++ Q L     +   +   + +G T+LH
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH---AKSGGTALH 204

Query: 213 YAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW 250
            AA  G  +  ++LI     +  ++ +GWTPL  A  W
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  136 bits (345), Expect = 3e-37
 Identities = 50/241 (20%), Positives = 81/241 (33%), Gaps = 40/241 (16%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           A  D ++   K L+E    + +    G    PLH +A+ G+ +I   LI  G  +   N 
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEG--WIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
            G T L  A +    E++   +  +         +   A             + L     
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERIMLRDARQWLNSGHI 190

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVS 198
           +                 K+G               LH+    G+ E ++LL+     V+
Sbjct: 191 N-----DVR-------HAKSGGTA------------LHVAAAKGYTEVLKLLIQARYDVN 226

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI 258
                   G T LH AA  G  + C+IL+     + A N  G T   VA       LE++
Sbjct: 227 I---KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 259 L 259
            
Sbjct: 284 Q 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (300), Expect = 7e-31
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 58/194 (29%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
                   G    +   +       ++   G   L  AC  G  E VL L+   A+I+ A
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYA 69

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           +  +G TALH A ++                                          +++
Sbjct: 70  NV-DGLTALHQACIDD-----------------------------------------NVD 87

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
           +            V+ L++ GA++++       G   LH AA  G     + LI+ GA +
Sbjct: 88  M------------VKFLVENGANINQ---PDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 234 TAENANGWTPLMVA 247
            A N+ G TPL +A
Sbjct: 133 GAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.5 bits (249), Expect = 9e-24
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 40/185 (21%)

Query: 52  NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           ++PL  +  +   E++   +   GVDI         A  +  +    +    L     N 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHIND 192

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
            R    +GGTALH+AA  G++  ++LL+    D      N     +     T        
Sbjct: 193 VRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD-----VNI----KDYDGWT-------- 234

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                   LH     G  E+ ++L++    +     V+  G T+   A         ++ 
Sbjct: 235 -------PLHAAAHWGKEEACRILVENLCDMEA---VNKVGQTAFDVADEDILGYLEELQ 284

Query: 227 IAMGA 231
                
Sbjct: 285 KKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 15/61 (24%), Positives = 22/61 (36%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  G  E   +L+E+  D+   N  GQTA   A +     +              
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294

Query: 114 D 114
            
Sbjct: 295 R 295

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  149 bits (378), Expect = 2e-41
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 30/211 (14%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           ++PLH +A      IV LL++ G D++ ++  G   L  AC +GH+EV   L+ + A ++
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             D     T LH AA         LLL   AD     P         +    S ++    
Sbjct: 119 AMDL-WQFTPLHEAASKNRVEVCSLLLSHGAD-----PTL------VNCHGKSAVDMAPT 166

Query: 169 YFHLEV---------LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGG- 218
               E          LL       +  V+  L L     +      +  T+LH A     
Sbjct: 167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK---QPQSHETALHCAVASLH 223

Query: 219 --NAQCCQILIAMGASLTAENANGWTPLMVA 247
               Q  ++L+  GA++  +N +  TPL VA
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (349), Expect = 2e-37
 Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 55/232 (23%)

Query: 52  NSPLHYSAAQGHH-EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
              L  +A  G+  ++++LL    V+ +  + R  T L  A  +    +V  L+ + A++
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
           H  D   G   LH A   GH     LLL   A       NA          T        
Sbjct: 85  HAKDK-GGLVPLHNACSYGHYEVTELLLKHGAC-----VNA----MDLWQFT-------- 126

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                   LH       VE   LLL  GA  +    V+  G +++  A      +     
Sbjct: 127 -------PLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLTYE 176

Query: 227 IAMGASLTA---------------------ENANGWTPLMVA-RSWHRTGLE 256
               + L A                     +  +  T L  A  S H    +
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (326), Expect = 5e-34
 Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 43/229 (18%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           A   G  +  + LL++   +     +    +PLH +A++   E+ SLL+  G D  L N 
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMDLWQ--FTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
            G++A+  A      E +              Y   G +L  AA       ++  L    
Sbjct: 156 HGKSAVDMAPTPELRERL-------------TYEFKGHSLLQAAREADLAKVKKTL---- 198

Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGH---VESVQLLLDLGASVS 198
                  N  + +S++T                LH    + H    +  +LLL  GA+V+
Sbjct: 199 --ALEIINFKQPQSHET---------------ALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           E    +    T LH AA   +    ++L   GA + A ++ G T L  A
Sbjct: 242 E---KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (304), Expect = 5e-31
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 47/203 (23%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            S +  +      E ++   +              +L+QA +      V   +  +    
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGH------------SLLQAAREADLAKVKKTLALEIINF 205

Query: 112 RADYLNGGTALHLAALNGHSRCI---RLLL---ADYIPSVPNAWNRLRKKSNKTGSILEF 165
           +    +  TALH A  + H +      LLL   A+      N  N    K   T      
Sbjct: 206 KQPQ-SHETALHCAVASLHPKRKQVAELLLRKGAN-----VNEKN----KDFMT------ 249

Query: 166 DERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ 224
                     LH+     H + +++L   GA ++    +   G T+LH AA  G+ Q C+
Sbjct: 250 ---------PLHVAAERAHNDVMEVLHKHGAKMNA---LDSLGQTALHRAALAGHLQTCR 297

Query: 225 ILIAMGASLTAENANGWTPLMVA 247
           +L++ G+  +  +  G+T   + 
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  118 bits (299), Expect = 3e-30
 Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 42/210 (20%)

Query: 16  SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH---EIVSLLIE 72
            G  L+ AAR+ DL + K  L       +        + LH + A  H    ++  LL+ 
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSH--ETALHCAVASLHPKRKQVAELLLR 235

Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
            G ++N +N    T L  A +  H +V+  L  + A ++  D   G TALH AAL GH +
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGHLQ 294

Query: 133 CIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQL 189
             RLLL   +D     P+  +        T                  +      E+VQ 
Sbjct: 295 TCRLLLSYGSD-----PSIIS----LQGFT---------------AAQM----GNEAVQQ 326

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAACGGN 219
           +L     +             L  A+  G+
Sbjct: 327 ILSESTPMRT-----SDVDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 185 ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA-QCCQILIAMGASLTAENANGWTP 243
           +S   L D  A               L  AA  GN  +   +L  +  +  A +    TP
Sbjct: 5   KSALDLADPSAKAVL---TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 244 LMVA 247
           L +A
Sbjct: 62  LHLA 65

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  143 bits (363), Expect = 9e-41
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 33/199 (16%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA-NIHR 112
            LH +A     +    L+E+  D N+++  G+T L  A       V   LI  +A ++  
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
             + +G T L LAA       +  L+   AD      NA +       K+          
Sbjct: 88  RMH-DGTTPLILAARLAVEGMLEDLINSHAD-----VNAVD----DLGKS---------- 127

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                 LH      +V++  +LL  GA+       +    T L  AA  G+ +  ++L+ 
Sbjct: 128 -----ALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLD 179

Query: 229 MGASLTAENANGWTPLMVA 247
             A+    +     P  +A
Sbjct: 180 HFANRDITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  128 bits (325), Expect = 3e-35
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 32/191 (16%)

Query: 62  GHHEIVSLLIESGVDI-NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
               ++S  I  G  + N  +  G+TAL  A ++   +    L+   A+ +  D   G T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN-MGRT 60

Query: 121 ALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH 177
            LH A         ++L+   A  +    +A    R     T                L 
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDL----DA----RMHDGTT---------------PLI 97

Query: 178 L-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAE 236
           L         ++ L++  A V+    V   G ++LH+AA   N     +L+  GA+   +
Sbjct: 98  LAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 237 NANGWTPLMVA 247
           N    TPL +A
Sbjct: 155 NNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 4e-33
 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 33/183 (18%)

Query: 54  PLHYSAAQGHHEIVSLLIESG-VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           PLH + +     +  +LI +   D++ R + G T L+ A +     ++  LI   A+++ 
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
            D   G +ALH AA   +     +LL   A+      +  N       +T          
Sbjct: 121 VDD-LGKSALHWAAAVNNVDAAVVLLKNGAN-----KDMQN----NREET---------- 160

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                 L L    G  E+ ++LLD  A+                 A    +    ++L  
Sbjct: 161 -----PLFLAAREGSYETAKVLLDHFANRDI---TDHMDRLPRDIAQERMHHDIVRLLDE 212

Query: 229 MGA 231
              
Sbjct: 213 YNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (274), Expect = 7e-28
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 29/149 (19%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PL  +A      ++  LI S  D+N  +  G++AL  A    + +  + L+   AN    
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           +     T L LAA  G     ++LL   A+      +  +      ++            
Sbjct: 155 NN-REETPLFLAAREGSYETAKVLLDHFAN-----RDITD----HMDRL----------- 193

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVS 198
                  +     H + V+LL +     S
Sbjct: 194 ----PRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  102 bits (257), Expect = 2e-25
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            S LH++AA  + +   +L+++G + +++N R +T L  A + G +E    L+ + AN  
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL 138
             D+        +A    H   +RLL 
Sbjct: 186 ITDH-MDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.3 bits (176), Expect = 2e-14
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PL  +A +G +E   +L++   + ++ ++  +     A +  H ++V  L  Y       
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-- 218

Query: 114 DYLNGGTALH 123
                   LH
Sbjct: 219 ------PQLH 222

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (366), Expect = 2e-40
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 35/199 (17%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
             +Y+ A  +  +V  L+ +G   NL     +  L QA      ++V  L+    +  + 
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           D   G TAL+ A  +G+ + ++L +                      KTG          
Sbjct: 92  DD-KGNTALYYAVDSGNMQTVKLFVKKNWR-----LMF-------YGKTG---------- 128

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
             +   +   +   V  V   L    S  +         + +H     G+     +L+  
Sbjct: 129 -WKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCIHITIKNGHVDMMILLLDY 183

Query: 230 GASLTAENANGWTP-LMVA 247
             S    N+  + P + +A
Sbjct: 184 MTSTNTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  139 bits (352), Expect = 2e-38
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 50/233 (21%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGV------RNSPLHYSAAQGHHEIVSLLIESGVD 76
           A  D +++    LL            G          PLH +A     +IV +L+ SG+D
Sbjct: 38  AIADNNVRLVCTLLNA----------GALKNLLENEFPLHQAATLEDTKIVKILLFSGLD 87

Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
            +  + +G TAL  A   G+ + V   +     +         T+ + A +      +  
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 137 LLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGA 195
            L+          +        +                +H+   NGHV+ + LLLD   
Sbjct: 148 FLS-------EIPSTFDLAILLS---------------CIHITIKNGHVDMMILLLDYMT 185

Query: 196 SVSEYLSVSGAGST-SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           S +     +       +  A    + +  Q L            N ++  +  
Sbjct: 186 STNT---NNSLLFIPDIKLAIDNKDIEMLQALFKYD-------INIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  134 bits (341), Expect = 6e-37
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 42/227 (18%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AA   D +  K LL       ++   G  N+ L+Y+   G+ + V L ++    +     
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKG--NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126

Query: 83  RG-QTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL--- 138
            G +T+   A       +V   +    +          + +H+   NGH   + LLL   
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA--ILLSCIHITIKNGHVDMMILLLDYM 184

Query: 139 ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASV 197
                   N  N                         + L   N  +E +Q L     ++
Sbjct: 185 TS-----TNTNN----SLLFIP--------------DIKLAIDNKDIEMLQALFKYDINI 221

Query: 198 SEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
                      ++        +A+  +++I       +++      +
Sbjct: 222 Y----------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (325), Expect = 1e-34
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 55  LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
           L         + +   + S  D    +  G +A   A    +  +V TL+   A  +  +
Sbjct: 4   LSR-INTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 115 YLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
                  LH AA    ++ +++LL    D      + ++        T            
Sbjct: 62  ---NEFPLHQAATLEDTKIVKILLFSGLD-----DSQFD----DKGNT------------ 97

Query: 172 LEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG 230
               L+    +G++++V+L +     +      +G   TS ++A    +       ++  
Sbjct: 98  ---ALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTG-WKTSFYHAVMLNDVSIVSYFLSEI 152

Query: 231 ASLTAENANGWTPLMVA 247
            S T + A   + + + 
Sbjct: 153 PS-TFDLAILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  111 bits (281), Expect = 2e-28
 Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           A   G++Q  K  ++ N RL+ Y   G + +  +++       IVS  +           
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWK-TSFYHAVMLNDVSIVSYFLSEIPSTFDLAI 160

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT-ALHLAALNGHSRCIRLLL--- 138
              + +    ++GH ++++ L+ Y  + +  +        + LA  N     ++ L    
Sbjct: 161 -LLSCIHITIKNGHVDMMILLLDYMTSTNTNN-SLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 139 ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVS 198
            +       +       +N                      L    E  +++++      
Sbjct: 219 IN-----IYS-------ANLENV------------------LLDDAEIAKMIIEKHVEYK 248

Query: 199 EYLSVSGAGSTSLHYAA 215
                S      +    
Sbjct: 249 S---DSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 13/89 (14%)

Query: 23  AARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLR 80
           A  + D++  +AL +Y  N             S    +      EI  ++IE  V+    
Sbjct: 202 AIDNKDIEMLQALFKYDINI-----------YSANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKAN 109
           +Y     +++  +          +     
Sbjct: 251 SYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  142 bits (361), Expect = 4e-40
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 33/199 (16%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA-NIHR 112
            LH +A     +    L+E+  D N+++  G+T L  A       V   LI  +A ++  
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
             + +G T L LAA       +  L+   AD      NA         K+          
Sbjct: 120 RMH-DGTTPLILAARLAVEGMLEDLINSHAD-----VNA----VDDLGKS---------- 159

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                 LH      +V++  +LL  GA+       +    T L  AA  G+ +  ++L+ 
Sbjct: 160 -----ALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLD 211

Query: 229 MGASLTAENANGWTPLMVA 247
             A+    +     P  +A
Sbjct: 212 HFANRDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  134 bits (340), Expect = 5e-37
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 32/207 (15%)

Query: 46  STFGVRNSPLHYSAAQGHHEIVSLLIESGVDI-NLRNYRGQTALMQACQHGHWEVVLTLI 104
           S  G      +    +    ++S  I  G  + N  +  G+TAL  A ++   +    L+
Sbjct: 18  SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 77

Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGS 161
              A+ +  D   G T LH A         ++L+   A  +    +A    R     T  
Sbjct: 78  EASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL----DA----RMHDGTT-- 126

Query: 162 ILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA 220
                         L L         ++ L++  A V+    V   G ++LH+AA   N 
Sbjct: 127 -------------PLILAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNNV 170

Query: 221 QCCQILIAMGASLTAENANGWTPLMVA 247
               +L+  GA+   +N    TPL +A
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  124 bits (315), Expect = 2e-33
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 33/185 (17%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESG-VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
            +PLH + +     +  +LI +   D++ R + G T L+ A +     ++  LI   A++
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
           +  D   G +ALH AA   +     +LL   A+      +  N       +T        
Sbjct: 151 NAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN-----KDMQN----NREET-------- 192

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                   L L    G  E+ ++LLD  A+                 A    +    ++L
Sbjct: 193 -------PLFLAAREGSYETAKVLLDHFANRDI---TDHMDRLPRDIAQERMHHDIVRLL 242

Query: 227 IAMGA 231
                
Sbjct: 243 DLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (270), Expect = 4e-27
 Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 43/190 (22%)

Query: 75  VDINLRNYRGQTALMQACQHGHW-------------EVVLTLILYKANIHRADYLNGGTA 121
           +D+N+R   G T LM A   G                V+   I   A++H      G TA
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 122 LHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL 178
           LHLAA    S   + LL   AD      N  +       +T                LH 
Sbjct: 61  LHLAARYSRSDAAKRLLEASAD-----ANIQD----NMGRT---------------PLHA 96

Query: 179 -TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
                     Q+L+   A+  +  +    G+T L  AA        + LI   A + A +
Sbjct: 97  AVSADAQGVFQILIRNRATDLD--ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154

Query: 238 ANGWTPLMVA 247
             G + L  A
Sbjct: 155 DLGKSALHWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.4 bits (197), Expect = 5e-17
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           PL  +A +G +E   +L++   + ++ ++  +     A +  H ++V  L L   + H 
Sbjct: 193 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRN 81
           P   +  + HH+IV LL       +  +
Sbjct: 226 PRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  141 bits (358), Expect = 7e-40
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 30/198 (15%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            L         +  S  I  G+ +          L+ +   G +++V  +I    +    
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           +   G TALH A   GH+  ++ L+    +      NA       ++  G          
Sbjct: 67  ND-EGITALHNAVCAGHTEIVKFLVQFGVN-----VNA-------ADSDGWT-------- 105

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
                LH      +V+  + L++ GA+V          +         G  QC Q L  +
Sbjct: 106 ----PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

Query: 230 GASLTAENANGWTPLMVA 247
              +   N      L   
Sbjct: 162 QEKMGIMNKGVIYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  103 bits (258), Expect = 2e-25
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 36/171 (21%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---AD 140
           GQ +L    +    +     I +   +           L  ++L G    ++ ++    D
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 141 YIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSE 199
                P+         N  G               LH     GH E V+ L+  G +V+ 
Sbjct: 63  -----PSL-------PNDEGIT------------ALHNAVCAGHTEIVKFLVQFGVNVNA 98

Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG---WTPLMVA 247
                  G T LH AA   N Q C+ L+  GA++ A   +           
Sbjct: 99  ---ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.2 bits (248), Expect = 4e-24
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 28/206 (13%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ ++ +G+    + ++         +  G   + LH +   GH EIV  L++ GV++N 
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEG--ITALHNAVCAGHTEIVKFLVQFGVNVNA 98

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTA--LHLAALNGHSRCIRLL 137
            +  G T L  A    + +V   L+   A +    Y +  TA         G+++C + L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 138 L---ADYIPSVPNAWNRLRKKSNKTGSI-LEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
                                 NK     L   E     E+ +     G   ++    D 
Sbjct: 159 YGVQEK-----MGI-------MNKGVIYALWDYEPQNDDELPMK---EGDCMTIIHREDE 203

Query: 194 GASVSEYLSVSGA---GSTSLHYAAC 216
                E+         G    +    
Sbjct: 204 D--EIEWWWARLNDKEGYVPRNLLGL 227

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
            G  +L         +     +A          + +R K N                 LL
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIA----------HGMRVKFNPLP------------LALL 41

Query: 177 HL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
              +L G  + VQ ++      S     +  G T+LH A C G+ +  + L+  G ++ A
Sbjct: 42  LDSSLEGEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98

Query: 236 ENANGWTPLMVA 247
            +++GWTPL  A
Sbjct: 99  ADSDGWTPLHCA 110

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  141 bits (358), Expect = 1e-39
 Identities = 43/252 (17%), Positives = 70/252 (27%), Gaps = 57/252 (22%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
            +   +DG              +V  Y T      P   +A +   + +S L+E   D++
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADVVSEYET------PWWTAARKADEQALSQLLE-DRDVD 71

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
             +  G+TAL+     G  + V  L    A++   D   G TALH+AA       +  L+
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
              AD         +    +   T                L L             +  G
Sbjct: 132 ELGAD-----IEVED----ERGLT---------------ALELAREILKTTPKGNPMQFG 167

Query: 195 A-------------------SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
                                V E +   G G    +         C  +     A   A
Sbjct: 168 RRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA 227

Query: 236 ENANGWTPLMVA 247
           ++      L  A
Sbjct: 228 KDYE--DGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  126 bits (320), Expect = 3e-34
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 38/217 (17%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
                   GH            D+       +T    A +    + + + +L   ++   
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL-SQLLEDRDVDAV 73

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           D  NG TAL   A  G  +C+RLL    AD      +  +    +   T           
Sbjct: 74  DE-NGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRD---MRGGLT----------- 113

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
                LH+       E V+ L++LGA +         G T+L  A            +  
Sbjct: 114 ----ALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELAREILKTTPKGNPMQF 166

Query: 230 GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGR 266
           G  +          ++  + +    +++I+  + +G+
Sbjct: 167 GRRI---GLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  124 bits (313), Expect = 3e-33
 Identities = 46/206 (22%), Positives = 68/206 (33%), Gaps = 32/206 (15%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGV--------RNSPLHYSAAQGHHEIVSLLIESG 74
           AAR  D Q    LLE                       + L + A  G  + V LL E+G
Sbjct: 52  AARKADEQALSQLLE-----------DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 75  VDINLRNYR-GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
            D++ R+ R G TAL  A  +   EVV  L+   A+I   D   G TAL LA     +  
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-RGLTALELAREILKTTP 159

Query: 134 IRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQL 189
               +         +    N L  +  +   + E  E+    + + +L       +   +
Sbjct: 160 KGNPMQFGRRI--GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWV 217

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAA 215
                A               L YA 
Sbjct: 218 KGVHVAEDVA-----KDYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (283), Expect = 5e-29
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 33/174 (18%)

Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
            +     G    +   + GH    +      A++         T    AA     + +  
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQ 63

Query: 137 LL--ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDL 193
           LL   D      +A +    ++ +T                L      G  + V+LL + 
Sbjct: 64  LLEDRD-----VDAVD----ENGRTA---------------LLFVAGLGSDKCVRLLAEA 99

Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           GA +         G T+LH AA     +  + L+ +GA +  E+  G T L +A
Sbjct: 100 GADLDH--RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.4 bits (238), Expect = 8e-23
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 34/155 (21%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHH 64
           +  G +A    L+  A  G  +  + L E     + R +R        + LH +A     
Sbjct: 74  DENGRTA----LLFVAGLGSDKCVRLLAEAGADLDHRDMRG-----GLTALHMAAGYVRP 124

Query: 65  EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI-------------- 110
           E+V  L+E G DI + + RG TAL  A +          + +   I              
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184

Query: 111 ---HRADYL----NGGTALHLAALNGHSRCIRLLL 138
                 + +     G    +L        C  +  
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 27/130 (20%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESG-------- 74
           AA     +  +AL+E    +      G   + L  +            ++ G        
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERG--LTALELAREILKTTPKGNPMQFGRRIGLEKV 175

Query: 75  --------------VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
                          +I  +  +G+            +      ++ A     DY     
Sbjct: 176 INVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE---D 232

Query: 121 ALHLAALNGH 130
            L  A     
Sbjct: 233 GLEYAVAESV 242

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  139 bits (352), Expect = 5e-39
 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 27/201 (13%)

Query: 52  NSPLHYSAAQGHH-EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           N PLH +  +    ++  LL      +  ++  G+  L  +      E+   L+    N+
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 111 HRADYL--NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
           +  DY   +G T  H+A   G+   ++ L    +    N           T         
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT----NQGVT--------- 109

Query: 169 YFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
                  LHL       E  Q L++ GASV             LH AA  G+ +  ++L 
Sbjct: 110 ------CLHLAVGKKWFEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLC 160

Query: 228 AMGAS-LTAENANGWTPLMVA 247
            +G S +  ++  GWTPL  A
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHA 181

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (349), Expect = 1e-38
 Identities = 56/242 (23%), Positives = 86/242 (35%), Gaps = 52/242 (21%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNS-------PLHYSAAQGHHEIVSLLIESGV 75
           A  + +  + + LL   P L+                 PLH+S +   HEI S L+    
Sbjct: 9   ACMENEFFKVQELLHSKPSLL--------LQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 76  DINLRNYR---GQTALMQACQHGHWEVVLTLI--LYKANIHRADYLNGGTALHLAALNGH 130
           ++NL +Y    G T    AC  G+ EVV +L     K ++++     G T LHLA     
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119

Query: 131 SRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVES 186
               + L+   A          +    K N+                 LH     G ++ 
Sbjct: 120 FEVSQFLIENGAS-----VRIKD----KFNQIP---------------LHRAASVGSLKL 155

Query: 187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI-AMGASLTAENANGWTPLM 245
           ++LL  LG S          G T L +A   G+     +L+   GA     +  G     
Sbjct: 156 IELLCGLGKSAVN--WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213

Query: 246 VA 247
           VA
Sbjct: 214 VA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (289), Expect = 6e-30
 Identities = 42/178 (23%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 54  PLHYSAAQGHHEIVSLLIE--SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           P H + + G+ E+V  L +     D+N    +G T L  A     +EV   LI   A++ 
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
             D       LH AA  G  + I LL      S  N     + K   T            
Sbjct: 135 IKDK-FNQIPLHRAASVGSLKLIELLC-GLGKSAVNW----QDKQGWTP----------- 177

Query: 172 LEVLLHL-TLNGHVESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
               L      GH ++  LL++  GA       V   G+ +   A    N Q  +  +
Sbjct: 178 ----LFHALAEGHGDAAVLLVEKYGAEYDL---VDNKGAKAEDVAL---NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  106 bits (267), Expect = 7e-27
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 32/171 (18%)

Query: 84  GQTALMQACQHGHW-EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
               L QAC    + +V   L    + + + D  +G   LH +           LL    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLD--LGAS 196
           +      N  +     S  T                 H+    G++E V+ L D  L   
Sbjct: 61  N-----VNLDDY-PDDSGWT---------------PFHIACSVGNLEVVKSLYDRPLKPD 99

Query: 197 VSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           +++   ++  G T LH A      +  Q LI  GAS+  ++     PL  A
Sbjct: 100 LNK---ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  138 bits (350), Expect = 7e-39
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 48/230 (20%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            L  +A  G  E+V   ++   D +  N  G TAL  A    ++ +V  LI   AN++  
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           D  +G T LH AA    +     L+   A        A       +   G          
Sbjct: 84  DS-HGWTPLHCAASCNDTVICMALVQHGAA-----IFA------TTLSDG---------- 121

Query: 171 HLEVLLHL---TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
                         G+ +    L D+  S+     ++     +L   +     +      
Sbjct: 122 --ATAFEKCDPYREGYADCATYLADVEQSMGL---MNSGAVYALWDYSAEFGDE-LSFRE 175

Query: 228 AMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLAL 277
               ++   +    T    A                 G+   +P  Y  L
Sbjct: 176 GESVTVLRRDGPEETDWWWAALH--------------GQEGYVPRNYFGL 211

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (265), Expect = 1e-26
 Identities = 30/190 (15%), Positives = 53/190 (27%), Gaps = 36/190 (18%)

Query: 67  VSLLIESGVDINLRN---YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALH 123
           +  ++                   L+ A   G  EVV   +    +  + +   G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59

Query: 124 LAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-T 179
            A    +   +  L+   A+      N+ +        T                LH   
Sbjct: 60  NAICGANYSIVDFLITAGAN-----VNSPD----SHGWTP---------------LHCAA 95

Query: 180 LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG--GNAQCCQILIAMGASLTAEN 237
                     L+  GA++    +    G+T+         G A C   L  +  S+   N
Sbjct: 96  SCNDTVICMALVQHGAAIFA--TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153

Query: 238 ANGWTPLMVA 247
           +     L   
Sbjct: 154 SGAVYALWDY 163

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  137 bits (347), Expect = 2e-38
 Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 40/233 (17%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           +  A    + +    L      ++  +     ++      ++G   ++         +  
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMS--DTNWWKGTSKGRTGLIP-----SNYVAE 68

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
           +       L +A + G+   +   +  +  ++  D   G TAL+ A   GH   + +L  
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFT 127

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
               +      N  N    K   T                LH     G+ + VQLLL  G
Sbjct: 128 QPNIE-----LNQQN----KLGDTA---------------LHAAAWKGYADIVQLLLAKG 163

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           A        +     +   A     A   +      A  T  NA  +     +
Sbjct: 164 ARTDL---RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (333), Expect = 2e-36
 Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 38/199 (19%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            +  +           L     DI        T   +    G   ++         +   
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQ 69

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
              +    LH AA  G+   +R  L           N  +    K+  T           
Sbjct: 70  AE-SIDNPLHEAAKRGNLSWLRECLDNRVG-----VNGLD----KAGSTA---------- 109

Query: 171 HLEVLLHL-TLNGHVESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                L+     GH + V++L       +++    +  G T+LH AA  G A   Q+L+A
Sbjct: 110 -----LYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYADIVQLLLA 161

Query: 229 MGASLTAENANGWTPLMVA 247
            GA     N        +A
Sbjct: 162 KGARTDLRNIEKKLAFDMA 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.7 bits (231), Expect = 5e-22
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            LH +A +G+ +IV LL+  G   +LRN   + A   A       ++       A    +
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202

Query: 114 DYLNGGTALHLAALNGH 130
           +          + L  H
Sbjct: 203 NA-EDYLDDEDSDLEHH 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  140 bits (356), Expect = 3e-38
 Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 41/244 (16%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYS--------TFGVRNSPLHYSAAQGHHEIVSLLIESG 74
            A +   ++++ L+ +  +    +             N+PL  +       +V+ L+++G
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAG 189

Query: 75  VDINLRNYRGQTALMQACQHGHWEVVLTLI---LYKANIHRADYLNGGTALHLAALNGHS 131
            D  + N   ++AL QA  +  + +++ ++     K +I   D  NG TAL + A N   
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGR 248

Query: 132 RCI---RLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHV 184
             +   +LL+   A  +     A     K   +T                LH      ++
Sbjct: 249 DQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRT---------------ALHYAAQVSNM 292

Query: 185 ESVQLLL-DLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTP 243
             V+ L+ + G++  +       G T +  AA  G  +    LI  GAS+ A +A   T 
Sbjct: 293 PIVKYLVGEKGSNKDK---QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349

Query: 244 LMVA 247
             +A
Sbjct: 350 RQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (347), Expect = 7e-37
 Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 46/238 (19%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A+ DG ++  +  L++               P       G+  +      +      
Sbjct: 41  LLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
                   L      G + +   +     NI      +  T LH  A N  +     L+ 
Sbjct: 90  PEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLIV 146

Query: 140 DYIPSV------PNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLD 192
                        NA +        T                L L  L      V  L+ 
Sbjct: 147 HEAKECIAAGADVNAMD----CDENT---------------PLMLAVLARRRRLVAYLMK 187

Query: 193 LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI---AMGASLTAENANGWTPLMVA 247
            GA  +     + +  ++LH AA   +      ++    +   +   + NG T LM+ 
Sbjct: 188 AGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  116 bits (293), Expect = 2e-29
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 52  NSPLHYSAAQGHHEIVSLLIE---SGVDINLRNYRGQTALMQACQHGHWEVVLT---LIL 105
            S LH +AA     ++  ++       DI   +  G TALM    +   + V +   L+ 
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 106 YKANIHRADYL-------NGGTALHLAALNGHSRCIRLLL----ADYIPSVPNAWNRLRK 154
             A +              G TALH AA   +   ++ L+    ++      +  +    
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-----KDKQD---- 310

Query: 155 KSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHY 213
           +  KT                + L    G +E V  L+  GASV     V     T+   
Sbjct: 311 EDGKT---------------PIMLAAQEGRIEVVMYLIQQGASVEA---VDATDHTARQL 352

Query: 214 AACGGNAQCCQILIAMGA 231
           A    +     I      
Sbjct: 353 AQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  109 bits (275), Expect = 7e-27
 Identities = 29/207 (14%), Positives = 53/207 (25%), Gaps = 49/207 (23%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  ++  G+ +            N   +       Q   +G+  +            
Sbjct: 38  QHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             +       LH  A  G       +     + I            + N+T         
Sbjct: 89  EPEP-ESPIKLHTEA-AGSYAITEPITRESVNII----------DPRHNRT--------- 127

Query: 169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA--------GSTSLHYAACGGNA 220
                VL  +  N   E  + L+      ++    +GA         +T L  A      
Sbjct: 128 -----VLHWIASNSSAEKSEDLI---VHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

Query: 221 QCCQILIAMGASLTAENANGWTPLMVA 247
           +    L+  GA  T  N +  + L  A
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 43/184 (23%)

Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS 131
           E     +      Q +L++A   G+ +     + +                     NG+ 
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGN- 73

Query: 132 RCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLL 191
                 L D+  +          +      I             LH    G     + + 
Sbjct: 74  ----DFLGDFNHTNLQIPT----EPEPESPI------------KLHTEAAGSYAITEPIT 113

Query: 192 DLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA--------MGASLTAENANGWTP 243
               ++ +         T LH+ A   +A+  + LI          GA + A + +  TP
Sbjct: 114 RESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169

Query: 244 LMVA 247
           LM+A
Sbjct: 170 LMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           P+  +A +G  E+V  LI+ G  +   +    TA   A  + H  +V      +   
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 8/77 (10%), Positives = 15/77 (19%), Gaps = 12/77 (15%)

Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LL  + +G+++  +  L                          GN              T
Sbjct: 41  LLEASYDGYIKRQRNELQHY------------SLYPNPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 235 AENANGWTPLMVARSWH 251
                    L    +  
Sbjct: 89  EPEPESPIKLHTEAAGS 105

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  136 bits (345), Expect = 5e-38
 Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 33/214 (15%)

Query: 53  SPLHYSAAQGHHEIVS-LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           SPL  +A +   + +S LL   G +++ R   G+TAL  A  + + E  + L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 112 RADY----LNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
                     G TALH+A +N +   +R LL   A       +A      ++  +     
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS-----VSA------RATGSVFHYR 113

Query: 165 FDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN---- 219
                ++ E  L      G  E V+LL++ GA +         G+T LH      N    
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA---QDSLGNTVLHILILQPNKTFA 170

Query: 220 AQCCQILIAMGA------SLTAENANGWTPLMVA 247
            Q   +L++              N  G TP  +A
Sbjct: 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  113 bits (285), Expect = 2e-29
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 35/179 (19%)

Query: 84  GQTALMQACQHGHWEVVLT-LILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
            ++ L+ A +    + +   L      +H+     G TALH+AAL  +     +L+    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAP 61

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVS 198
           + +     +         +T                LH+  +N +V  V+ LL  GASVS
Sbjct: 62  ELVFEPMTSEL----YEGQT---------------ALHIAVINQNVNLVRALLARGASVS 102

Query: 199 E----------YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
                        ++   G   L +AAC G+ +  ++LI  GA + A+++ G T L + 
Sbjct: 103 ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 95.4 bits (238), Expect = 6e-23
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 20/136 (14%)

Query: 23  AARDGDLQEAKALLEY-----------NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI 71
           A  + ++   +ALL                   ++       PL ++A  G  EIV LLI
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEVVLT----LILYKANIHRADYL-----NGGTAL 122
           E G DI  ++  G T L       +          L+ Y    H           G T  
Sbjct: 142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201

Query: 123 HLAALNGHSRCIRLLL 138
            LA + G+    + L+
Sbjct: 202 KLAGVEGNIVMFQHLM 217

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  135 bits (342), Expect = 6e-38
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 37/208 (17%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            + L  +  +   ++  +L ++   ++  +  G T L  A  +   E+   LI   A+I+
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             +     +    A   G +  +  +L      +            K N+ G        
Sbjct: 67  LQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDL-----------NKHNRYGGN------ 108

Query: 169 YFHLEVLLHL-TLNGHVESVQLLLDLG-ASVSEYLSVSGAGSTSLHYAACGGNAQCC--- 223
                  L      GH+++V+LLL+ G   +      +  G T+L  A            
Sbjct: 109 ------ALIPAAEKGHIDNVKLLLEDGREDIDF---QNDFGYTALIEAVGLREGNQLYQD 159

Query: 224 --QILIAMGASLTAENANGWTPLMVARS 249
             ++L+  GA  + ++ +G T +  A  
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQ 187

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  126 bits (318), Expect = 2e-34
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 27/181 (14%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA-NI 110
           N+PL+ +      EI   LI+ G DINL+N    +  + A   G  E++  ++ +   ++
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL----ADYIPSVPNAWNRLRKKSNKTGSILEFD 166
           ++ +   GG AL  AA  GH   ++LLL     D      +  N        T       
Sbjct: 100 NKHNR-YGGNALIPAAEKGHIDNVKLLLEDGRED-----IDFQN----DFGYTA------ 143

Query: 167 ERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                  V L      + + V+LL++ GA  S       +G T++ YA   G  +  +IL
Sbjct: 144 ---LIEAVGLREGNQLYQDIVKLLMENGADQSI---KDNSGRTAMDYANQKGYTEISKIL 197

Query: 227 I 227
            
Sbjct: 198 A 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  106 bits (268), Expect = 3e-27
 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 38/177 (21%)

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           ++ Y     L  A Q    +V   L      +   D   G T L++A  N      + L+
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALI 59

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGA 195
              AD      N  N      + +                L+    G  E +  +L    
Sbjct: 60  DRGAD-----INLQN----SISDS--------------PYLYAGAQGRTEILAYMLKHAT 96

Query: 196 ----SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG-ASLTAENANGWTPLMVA 247
                 + Y      G  +L  AA  G+    ++L+  G   +  +N  G+T L+ A
Sbjct: 97  PDLNKHNRY------GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.9 bits (162), Expect = 9e-13
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 54  PLHYSAA-----QGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
            L  +       Q + +IV LL+E+G D ++++  G+TA+  A Q G+ E+   L  Y
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  131 bits (333), Expect = 5e-37
 Identities = 49/196 (25%), Positives = 77/196 (39%), Gaps = 57/196 (29%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  +A  G  + V +L+ +G D+N  +  G T L  A  +GH E+V  L+   A+++
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
             D+  G T L LAAL G                                         H
Sbjct: 75  AVDH-AGMTPLRLAALFG-----------------------------------------H 92

Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
           LE+            V++LL  GA V+        G T LH AA  G+ +  ++L+  GA
Sbjct: 93  LEI------------VEVLLKNGADVNA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

Query: 232 SLTAENANGWTPLMVA 247
            + A++  G T   ++
Sbjct: 138 DVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 31/144 (21%)

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
           ++ H     + G  L  AA  G    +R+L+   AD      NA       S  T     
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-----VNA----EDASGWTP---- 50

Query: 165 FDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
                      LHL   NGH+E V++LL  GA V+    V  AG T L  AA  G+ +  
Sbjct: 51  -----------LHLAAFNGHLEIVEVLLKNGADVNA---VDHAGMTPLRLAALFGHLEIV 96

Query: 224 QILIAMGASLTAENANGWTPLMVA 247
           ++L+  GA + A +  G TPL +A
Sbjct: 97  EVLLKNGADVNANDMEGHTPLHLA 120

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  131 bits (331), Expect = 1e-36
 Identities = 46/189 (24%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 54  PLHYSAAQGHHEIVSLLIESG-VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
            +     +G+   V L +++   D+N  +  G + L  AC+ G   VV  LI+  A I+ 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
            +     T LHLAA +GH   ++ LL   AD      NA        N+ G         
Sbjct: 68  MNR-GDDTPLHLAASHGHRDIVQKLLQYKAD-----INA-------VNEHG--------- 105

Query: 170 FHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
               V LH     G  +  + L+  GA VS     +  G   +  A         +    
Sbjct: 106 ---NVPLHYACFWGQDQVAEDLVANGALVSI---CNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 229 MGASLTAEN 237
           MG +L    
Sbjct: 160 MGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  123 bits (312), Expect = 8e-34
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 41/207 (19%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           + +  R+G+    +  L+     + +    G   SPLH++  +G   +V +LI  G  IN
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHG--FSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           + N    T L  A  HGH ++V  L+ YKA+I+  +  +G   LH A   G  +    L+
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLV 125

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
              A       +  N    K  +                 +            +    +G
Sbjct: 126 ANGAL-----VSICN----KYGEM---------------PVDKAKAPLRELLRERAEKMG 161

Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQ 221
            +++                   G  +
Sbjct: 162 QNLNR---------IPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  110 bits (279), Expect = 4e-29
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 33/169 (19%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKAN-IHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
               +   C+ G+   V   +    N +++ D  +G + LH A   G S  + +L+   A
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVS 198
                  N  N    + + T                LHL   +GH + VQ LL   A ++
Sbjct: 64  R-----INVMN----RGDDT---------------PLHLAASHGHRDIVQKLLQYKADIN 99

Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
               V+  G+  LHYA   G  Q  + L+A GA ++  N  G  P+  A
Sbjct: 100 A---VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 24/132 (18%)

Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
                +      G++  +RL L                  N    + + D+   H    L
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWL-----------------DNTENDLNQGDD---HGFSPL 43

Query: 177 HL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
           H     G    V++L+  GA ++    ++    T LH AA  G+    Q L+   A + A
Sbjct: 44  HWACREGRSAVVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100

Query: 236 ENANGWTPLMVA 247
            N +G  PL  A
Sbjct: 101 VNEHGNVPLHYA 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  129 bits (327), Expect = 1e-35
 Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 17/210 (8%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
              + + +    E+   ++         +   +TAL  AC  GH E+V  L+     ++ 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRL----RKKSNKTGSIL-- 163
            D   G + LH+AA  G    ++ LL   A       N    L     K  ++   +L  
Sbjct: 69  KDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 164 ---EFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN 219
                D +  +    +H     G+++ V +LL   AS +        G+T LH A     
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPLHLACDEER 184

Query: 220 AQCCQILIAMGASLTAENANGWTPLMVARS 249
            +  + L+  GAS+  EN    TPL VA+ 
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAKG 214

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 8e-20
 Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 32/183 (17%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---AD 140
                  A      E+   ++  K+   R D  +  TALH A   GH+  +  LL     
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 141 YIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSE 199
                 N     +  +  +                LH+    G  E V+ LL  GA V+ 
Sbjct: 66  -----VND----KDDAGWS---------------PLHIAASAGXDEIVKALLVKGAHVNA 101

Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
              V+  G T LHYAA     +   +L+  GA+  A++    T +  A +     +  IL
Sbjct: 102 ---VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 260 STQ 262
              
Sbjct: 159 LFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 45/180 (25%), Positives = 65/180 (36%), Gaps = 26/180 (14%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            SPLH +A+ G  EIV  L+  G  +N  N  G T L  A      E+ + L+   AN  
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
             D+    TA+H AA  G+ + + +LL         A   ++     T            
Sbjct: 134 AKDH-YDATAMHRAAAKGNLKMVHILLFY------KASTNIQDTEGNT------------ 174

Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
              L        VE  + L+  GAS+      +    T L  A   G        +A G 
Sbjct: 175 --PLHLACDEERVEEAKFLVTQGASIYI---ENKEEKTPLQVAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 23  AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
           AA  G  +  KALL     +   +  G   +PLHY+A++  HEI  +L+E G + + +++
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

Query: 83  RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
              TA+ +A   G+ ++V  L+ YKA+ +  D   G T LHLA         + L+    
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGA 196

Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASV 197
                                         +  L +   G +  +   L  G   
Sbjct: 197 ---------------------SIYIENKEEKTPLQVA-KGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  AA     + A  LLE          +    + +H +AA+G+ ++V +L+      N+
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYD--ATAMHRAAAKGNLKMVHILLFYKASTNI 167

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           ++  G T L  AC     E    L+   A+I+  +     T L +A   G    I   L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK-EEKTPLQVAK--GGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 31/147 (21%)

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           +     +LA           +L   +               + ++T              
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL-----ATR----TDQDSRT-------------- 42

Query: 174 VLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
             LH     GH E V+ LL LG  V++      AG + LH AA  G  +  + L+  GA 
Sbjct: 43  -ALHWACSAGHTEIVEFLLQLGVPVND---KDDAGWSPLHIAASAGXDEIVKALLVKGAH 98

Query: 233 LTAENANGWTPLMVARSWHRTGLEDIL 259
           + A N NG TPL  A S +R  +  +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  A  +  ++EAK L+     +   +      +PL    A+G   ++   +  G + ++
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEE--KTPLQV--AKGGLGLILKRLAEGEEASM 231

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  130 bits (328), Expect = 1e-34
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 14/201 (6%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW----EVVLTLILYK 107
           N+PLH+  +  + E+V  L++ G +    +  G++ L++A +  +          L    
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
             +   D     T LH   +             Y+  +      +     K    ++   
Sbjct: 192 PCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDIL------MGWIVKKQNRPIQSGT 244

Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVS-GAGSTSLHYAACGGNAQCCQIL 226
                    +       +S+   LDL   ++  L+     G T L+ AA  GN      L
Sbjct: 245 NEKES--KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

Query: 227 IAMGASLTAENANGWTPLMVA 247
           +  GA     N +G  P+   
Sbjct: 303 LDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.7 bits (165), Expect = 9e-13
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
             +        E + L       +N ++  G T L  A + G+  +V  L+ Y A+   A
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 114 DYLNGGTALHLAA 126
           +  +G   +   A
Sbjct: 313 NK-SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 24/199 (12%), Positives = 44/199 (22%), Gaps = 61/199 (30%)

Query: 51  RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQ-ACQHGHWEVVLTLILYKAN 109
             + L         E+ + L     + N             +      EV       + N
Sbjct: 63  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122

Query: 110 IHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
           ++     +G T LH                                              
Sbjct: 123 LNIPVDEHGNTPLHWLTSI----------------------------------------- 141

Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ----I 225
                        ++E V+ L+  G++          G + L  A    N         +
Sbjct: 142 ------------ANLELVKHLVKHGSNRLY---GDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 226 LIAMGASLTAENANGWTPL 244
           L  +   L  E++   T L
Sbjct: 187 LDYLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 197 VSEYLSVSGA---------GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           V++    +           G+T LH+     N +  + L+  G++    +  G + L+ A
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ 93
           ++ L+ +A  G+  IV  L++ G D  + N  G   +     
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  125 bits (316), Expect = 2e-34
 Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 36/185 (19%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
            +   +DG              +V  Y T      P   +A +   + +S L+E   D++
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADVVSEYET------PWWTAARKADEQALSQLLE-DRDVD 70

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
             +  G+TAL+     G  + V  L    A++   D   G TALH+AA       +  L+
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 139 ---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLG 194
              AD         +    +   T                L L             +  G
Sbjct: 131 ELGAD-----IEVED----ERGLTA---------------LELAREILKTTPKGNPMQFG 166

Query: 195 ASVSE 199
             +  
Sbjct: 167 RRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (309), Expect = 2e-33
 Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 35/189 (18%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
                   GH            D+       +T    A +    + +  L+    ++   
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDAV 72

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
           D  NG TAL   A  G  +C+RLL    AD      +  +    +   T           
Sbjct: 73  DE-NGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRD---MRGGLT----------- 112

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
                LH+       E V+ L++LGA +         G T+L  A            +  
Sbjct: 113 ----ALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELAREILKTTPKGNPMQF 165

Query: 230 GASLTAENA 238
           G  +  E  
Sbjct: 166 GRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (291), Expect = 7e-31
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 33/178 (18%)

Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
           + +  +     G    +   + GH    +      A++         T    AA     +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQ 58

Query: 133 CIRLLL--ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQL 189
            +  LL   D      +A +    ++ +T                L      G  + V+L
Sbjct: 59  ALSQLLEDRD-----VDAVD----ENGRTA---------------LLFVAGLGSDKCVRL 94

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           L + GA +         G T+LH AA     +  + L+ +GA +  E+  G T L +A
Sbjct: 95  LAEAGADLDH--RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  125 bits (316), Expect = 3e-34
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 57/196 (29%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            +PL  +   G    +  L+E+   +  ++  G TAL+ A ++    +   L+   +N++
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
             D+ +G T L  + + G                                         +
Sbjct: 96  TKDF-SGKTPLMWSIIFG-----------------------------------------Y 113

Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
            E+               LL+ GA+V++    +  G T L  A+  G ++  + L+ +GA
Sbjct: 114 SEM------------SYFLLEHGANVND---RNLEGETPLIVASKYGRSEIVKKLLELGA 158

Query: 232 SLTAENANGWTPLMVA 247
            ++A +  G T    A
Sbjct: 159 DISARDLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.1 bits (212), Expect = 1e-19
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 38/171 (22%)

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL-- 138
           +  G+       +    + +  L  Y+ +          T L +A + G    I  L+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKLVEN 57

Query: 139 -ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGAS 196
                       +        T                L     N  +   + LL  G++
Sbjct: 58  FDK-----LEDKD----IEGST---------------ALIWAVKNNRLGIAEKLLSKGSN 93

Query: 197 VSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           V+       +G T L ++   G ++    L+  GA++   N  G TPL+VA
Sbjct: 94  VNT---KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
           PL  ++  G  EIV  L+E G DI+ R+  G TA   A   G  EV+      + 
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  122 bits (309), Expect = 1e-33
 Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 59/195 (30%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            L  +AA+G  E ++ L+++ V++N +N  G+TAL    + G+ E+   L+L  AN    
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLK 66

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           D   G   +H AA  G                                          L+
Sbjct: 67  DR-TGFAVIHDAARAG-----------------------------------------FLD 84

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS- 232
                        +Q LL+  A V+        G+  LH AA  G+ +  + L+   AS 
Sbjct: 85  T------------LQTLLEFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129

Query: 233 LTAENANGWTPLMVA 247
           +   N  G T   +A
Sbjct: 130 VGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  113 bits (285), Expect = 4e-30
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 39/184 (21%)

Query: 20  LVSAARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV 75
           L SAA  GDL++  +LL+     N +    + FG   + L      G+ EI   L+  G 
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQ----NGFG--RTALQV-MKLGNPEIARRLLLRGA 61

Query: 76  DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIR 135
           + +L++  G   +  A + G  + + TL+ ++A+++  D   G   LHLAA  GH R + 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVE 120

Query: 136 LLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLL 191
            L+   A  +       N        T                  L  L G  E V L+ 
Sbjct: 121 FLVKHTASNV----GHRN----HKGDTA---------------CDLARLYGRNEVVSLMQ 157

Query: 192 DLGA 195
             GA
Sbjct: 158 ANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.7 bits (211), Expect = 1e-19
 Identities = 31/134 (23%), Positives = 43/134 (32%), Gaps = 30/134 (22%)

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
             G  L  AA  G    +  LL    +      NA N       +T              
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN-----VNAQN----GFGRT-------------- 40

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
             L +   G+ E  + LL  GA+          G   +H AA  G     Q L+   A +
Sbjct: 41  -ALQVMKLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 234 TAENANGWTPLMVA 247
             E+  G  PL +A
Sbjct: 97  NIEDNEGNLPLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
               L  AA  G+ +    L+    ++ A+N  G T L V +  +
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN 49

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  120 bits (304), Expect = 5e-33
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 58/196 (29%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  +A  G  + V +L+ +G      ++ G + L  A Q+GH+     L+    +  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
                   T LH+AA  G                                         H
Sbjct: 62  ARTK-VDRTPLHMAASEG-----------------------------------------H 79

Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
             +            V++LL  GA V+          T+LH+A    + +  ++LI  GA
Sbjct: 80  ANI------------VEVLLKHGADVNA---KDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 232 SLTAENANGWTPLMVA 247
            +  ++    T   ++
Sbjct: 125 DVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (273), Expect = 1e-28
 Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 46/182 (25%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGV-------RNSPLHYSAAQGHHEIVSLLIE 72
           L+ AAR G   E + L+            G          SPLH +A  GH     +L+ 
Sbjct: 6   LLEAARAGQDDEVRILMAN----------GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 73  SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
           +GV  + R    +T L  A   GH  +V  L+ + A+++  D     TALH A  + H  
Sbjct: 56  AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQE 114

Query: 133 CIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQ 188
            + LL+   AD      +  +    K  KT                  +   NG+ +  +
Sbjct: 115 VVELLIKYGAD-----VHTQS----KFCKT---------------AFDISIDNGNEDLAE 150

Query: 189 LL 190
           +L
Sbjct: 151 IL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.0 bits (196), Expect = 8e-18
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 32/135 (23%)

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           + G  L  AA  G    +R+L+   A +                 +              
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-----TT-----DWLGTS-------------- 36

Query: 174 VLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
             LHL    GH  + ++LL  G S       +    T LH AA  G+A   ++L+  GA 
Sbjct: 37  -PLHLAAQYGHFSTTEVLLRAGVSRDA---RTKVDRTPLHMAASEGHANIVEVLLKHGAD 92

Query: 233 LTAENANGWTPLMVA 247
           + A++    T L  A
Sbjct: 93  VNAKDMLKMTALHWA 107

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  116 bits (293), Expect = 2e-31
 Identities = 33/191 (17%), Positives = 51/191 (26%), Gaps = 57/191 (29%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            L  +AA+G  E V  L+E+G + N  N  G+  +      G   V   L+L+ A  + A
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           D       +H AA  G                                          L+
Sbjct: 74  DPATLTRPVHDAAREG-----------------------------------------FLD 92

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
                        + +L   GA +         G   +  A   G+    + L A     
Sbjct: 93  T------------LVVLHRAGARLDV---RDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137

Query: 234 TAENANGWTPL 244
              N       
Sbjct: 138 RGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  104 bits (262), Expect = 5e-27
 Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 20  LVSAARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV 75
           L +AA  G ++E +ALLE     N              P+      G   +  LL+  G 
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRR------PIQV-MMMGSARVAELLLLHGA 68

Query: 76  DINLRNYRGQT-ALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI 134
           + N  +    T  +  A + G  + ++ L    A +   D   G   + LA   GH    
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVA 127

Query: 135 RLLL---ADYIPSVPNAWNRLR 153
           R L               N  R
Sbjct: 128 RYLRAAAGG-----TRGSNHAR 144

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.5 bits (236), Expect = 2e-23
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
            P+H +A +G  + + +L  +G  +++R+  G+  +  A + GH +V   L         
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-- 137

Query: 113 ADYLNGGTALHLAALNGH 130
                G     + A  G 
Sbjct: 138 ----RGSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 85.6 bits (213), Expect = 4e-20
 Identities = 33/139 (23%), Positives = 46/139 (33%), Gaps = 31/139 (22%)

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
           +        L  AA  G    +R LL   A+     PNA        N  G         
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGAN-----PNA-------PNSYG--------- 45

Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIA 228
                 + + + G     +LLL  GA  +       A  T  +H AA  G      +L  
Sbjct: 46  ---RRPIQVMMMGSARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 229 MGASLTAENANGWTPLMVA 247
            GA L   +A G  P+ +A
Sbjct: 100 AGARLDVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 7/81 (8%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           +  AAR+G L     L     RL     +G    P+  +   GH ++   L  +      
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVRDAWG--RLPVDLAEELGHRDVARYLRAAAGGTR- 138

Query: 80  RNYRGQTALMQACQHGHWEVV 100
               G          G  ++ 
Sbjct: 139 ----GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 206 AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
             +  L  AA  G  +  + L+  GA+  A N+ G  P+ V     
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS 56

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (286), Expect = 3e-30
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
           NS         L+ AA+ GD++  K L        R    G +++PLH++A      +V 
Sbjct: 5   NSEADRQ----LLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSVVE 59

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN 128
            L++ G D++ ++  G   L  AC +GH+EV   L+ + A ++ AD     T LH AA  
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAK 118

Query: 129 GHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVE 185
           G     +LLL   AD     P   N    +   T                L L  +G  +
Sbjct: 119 GKYEICKLLLQHGAD-----PTKKN----RDGNT---------------PLDLVKDGDTD 154

Query: 186 SVQLLLDLGA 195
              LL    A
Sbjct: 155 IQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (260), Expect = 1e-26
 Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 33/176 (18%)

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYK-ANIHRADYLNGGTALHLAALNGHSRCIRLLL- 138
           N      L++A + G  E V  L   +  N    +     T LH AA       +  LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 139 --ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGA 195
             AD      +A +    K                    LH     GH E  +LL+  GA
Sbjct: 64  HGAD-----VHAKD----KGGLVP---------------LHNACSYGHYEVAELLVKHGA 99

Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
            V+          T LH AA  G  + C++L+  GA  T +N +G TPL + +   
Sbjct: 100 VVNV---ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 28/141 (19%)

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
           A  +          L  AA  G    ++ L                  + ++ +  + + 
Sbjct: 2   AMGNS----EADRQLLEAAKAGDVETVKKLC-----------------TVQSVNCRDIEG 40

Query: 168 RYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
           R       LH       V  V+ LL  GA V         G   LH A   G+ +  ++L
Sbjct: 41  RQ---STPLHFAAGYNRVSVVEYLLQHGADVHA---KDKGGLVPLHNACSYGHYEVAELL 94

Query: 227 IAMGASLTAENANGWTPLMVA 247
           +  GA +   +   +TPL  A
Sbjct: 95  VKHGAVVNVADLWKFTPLHEA 115

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)

Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM-GASLTAENANGWTPLMVA 247
           GA  +            L  AA  G+ +  + L  +   +         TPL  A
Sbjct: 1   GAMGNSE------ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA 49

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  111 bits (281), Expect = 7e-30
 Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 57/182 (31%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            LH ++ +G    V  L+++G D N++++ G T L +AC HGH +VV  L+ +KA ++  
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
            Y    + LH AA NG                                         H++
Sbjct: 73  GY-QNDSPLHDAAKNG-----------------------------------------HVD 90

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
           +            V+LLL  GAS +    V+  G   + Y           +     +S 
Sbjct: 91  I------------VKLLLSYGASRNA---VNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

Query: 234 TA 235
            +
Sbjct: 136 AS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  103 bits (260), Expect = 6e-27
 Identities = 40/174 (22%), Positives = 59/174 (33%), Gaps = 58/174 (33%)

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
           G+D    N+RG+T L  A   G    V  L+   ++ +  D+  G T LH A  +G    
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHG---- 54

Query: 134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
                                                HL+V            V+LLL  
Sbjct: 55  -------------------------------------HLKV------------VELLLQH 65

Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
            A V+          + LH AA  G+    ++L++ GAS  A N  G  P+   
Sbjct: 66  KALVNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (255), Expect = 3e-26
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 23  AARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
           A+  GD+   + LL+     N +       G   +PLH +   GH ++V LL++    +N
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVK----DHAG--WTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 79  LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
              Y+  + L  A ++GH ++V  L+ Y A+ +  +   G   +           + L  
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSLLLLPE 129

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  115 bits (289), Expect = 8e-30
 Identities = 46/266 (17%), Positives = 80/266 (30%), Gaps = 58/266 (21%)

Query: 18  ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVR------NSPLHYSAA---QGHHEIVS 68
           +RL S    G  +E   LLEY     +Y T           + L  +      G +  + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 69  LLIESG-----------VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD--- 114
            L++                    Y+G +AL  A +    + V  L+   A++H      
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 115 ---------YLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF 165
                    +  G   L LAA       +  LL       P+    L    +   ++L  
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-----ENPHQPASLEATDSLGNTVL-- 176

Query: 166 DERYFHLEVL----------LHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYA 214
                H  V+          L +   +G ++    L             +  G T L  A
Sbjct: 177 -----HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI---SNHQGLTPLKLA 228

Query: 215 ACGGNAQCCQILIAMGASLTAENANG 240
           A  G  +  + ++    S  A + + 
Sbjct: 229 AKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 23  AARDGDLQEAKALLEYNPR-----------------LVRYSTFGVRNSPLHYSAAQGHHE 65
           AA          LLE   +                 LV  +     NS L      G  +
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 66  IVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI----HRADY 115
           + + L  +     + N++G T L  A + G  E+   ++  + +     H   +
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.0 bits (148), Expect = 9e-11
 Identities = 28/193 (14%), Positives = 45/193 (23%), Gaps = 80/193 (41%)

Query: 84  GQTALMQACQHGHWEVVLTLILY--------KANIHRADYLNGGTALHLAALNGHSRCIR 135
            +  L      G  E +  L+ Y          + +      G T L  A LN       
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQ----- 55

Query: 136 LLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGA 195
                                                        +G    +  LL +  
Sbjct: 56  ---------------------------------------------DGVNACIMPLLQIDK 70

Query: 196 SVSEYLSVSGA--------GSTSLHYAACGGNAQCCQILIAMGASLTAENAN-------- 239
                  +  A        G ++LH A    + QC ++L+  GA +              
Sbjct: 71  DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG 130

Query: 240 -----GWTPLMVA 247
                G  PL +A
Sbjct: 131 TCFYFGELPLSLA 143

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 19/97 (19%)

Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-----GSTSLHYAAC---GGNAQ 221
           F  + L  +   G  E +  LL+     S+YL+ S       G T L  A      G   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 222 CCQILIA-----------MGASLTAENANGWTPLMVA 247
           C   L+            + A  T E   G + L +A
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA 97

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (279), Expect = 8e-30
 Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 57/178 (32%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  GH E+V LL+E+G D+N ++  G+T L  A ++GH EVV  L+   A+++  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           D  NG T LHLAA NG                                         HLE
Sbjct: 65  DK-NGRTPLHLAARNG-----------------------------------------HLE 82

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
           V            V+LLL+ GA V+        G T LH AA  G+ +  ++L+  GA
Sbjct: 83  V------------VKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 7e-19
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 31/135 (22%)

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           NG T LHLAA NGH   ++LLL   AD      NA +    K+ +T              
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKD----KNGRT-------------- 37

Query: 174 VLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
             LHL   NGH+E V+LLL+ GA V+        G T LH AA  G+ +  ++L+  GA 
Sbjct: 38  -PLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93

Query: 233 LTAENANGWTPLMVA 247
           + A++ NG TPL +A
Sbjct: 94  VNAKDKNGRTPLHLA 108

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  110 bits (278), Expect = 2e-29
 Identities = 33/178 (18%), Positives = 51/178 (28%), Gaps = 57/178 (32%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
            L  +AA+G  E V  L+E+G D N  N  G+  +      G  +V   L+L+ A  + A
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
           D       +H AA  G                                          L+
Sbjct: 74  DPATLTRPVHDAAREG-----------------------------------------FLD 92

Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
                        + +L   GA +         G   +  A   G+    + L A   
Sbjct: 93  T------------LVVLHRAGARLDV---CDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  107 bits (269), Expect = 3e-28
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L +AA  G ++  + LLE        + FG    P+      G  ++  LL+  G + N 
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFG--RRPIQV-MMMGSAQVAELLLLHGAEPNC 72

Query: 80  RNYRGQT-ALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            +    T  +  A + G  + ++ L    A +   D   G   + LA   GH    R L 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLH 131

Query: 139 A 139
           A
Sbjct: 132 A 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 32/144 (22%)

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILE 164
             IH     +    L  AA  G    +R LL   AD     PNA N    +  +      
Sbjct: 3   PGIHMLGG-SSDAGLATAAARGQVETVRQLLEAGAD-----PNALN----RFGRRP---- 48

Query: 165 FDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCC 223
                      + + + G  +  +LLL  GA  +       A  T  +H AA  G     
Sbjct: 49  -----------IQVMMMGSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTL 94

Query: 224 QILIAMGASLTAENANGWTPLMVA 247
            +L   GA L   +A G  P+ +A
Sbjct: 95  VVLHRAGARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.5 bits (192), Expect = 2e-17
 Identities = 11/57 (19%), Positives = 28/57 (49%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
            P+H +A +G  + + +L  +G  +++ +  G+  +  A + GH ++   L     +
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
               L  AA  G  +  + L+  GA   A N  G  P+ V     
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS 56

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           +  AAR+G L     L     RL     +G    P+  +  QGH +I   L  +  D
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVCDAWG--RLPVDLAEEQGHRDIARYLHAATGD 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (276), Expect = 5e-29
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 46/187 (24%)

Query: 17  GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGV----RNS----PLHYSAAQGHHEIVS 68
           G+RL  AA  GD+QE + LL             V     N      L      G   I  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRE---------LVHPDALNRFGKTALQV-MMFGSTAIAL 52

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN 128
            L++ G   N+++  G + +  A + G  + +  L+ + A+++  D   G   +HLA   
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQE 111

Query: 129 GHSRCIRLLL--ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVE 185
           GH+  +  L   +D      +  +        T                L L    G  +
Sbjct: 112 GHTAVVSFLAAESD-----LHRRD----ARGLTP---------------LELALQRGAQD 147

Query: 186 SVQLLLD 192
            V +L  
Sbjct: 148 LVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 2e-27
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 83  RGQTALMQACQHGHWEVVLTLIL-YKANIHRADYLNGGTALHLAALNGHSRCIRLLL--- 138
           R    L  A   G  + V  L+     +    +   G TAL +    G +     LL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQG 58

Query: 139 ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASV 197
           A      PN  +     S  +                +H     G ++++++L++ GA V
Sbjct: 59  AS-----PNVQD----TSGTS---------------PVHDAARTGFLDTLKVLVEHGADV 94

Query: 198 SEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           +      G G+  +H A   G+      L A  + L   +A G TPL +A
Sbjct: 95  NV---PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELA 140

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 5e-28
 Identities = 42/268 (15%), Positives = 77/268 (28%), Gaps = 52/268 (19%)

Query: 17  GERLVSAARDGDLQEAKALLEYNPRL------VRYSTFGVRNSPLHY---SAAQGHHEIV 67
              +  A    + QE ++LL +  R         +       + L     +   G ++ +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 68  SLLIESGVDI-----------NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD-- 114
           +LL++                    Y+GQTAL  A +  +  +V  L+   A++  A   
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 115 -----------YLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSIL 163
                      +  G   L LAA       ++ LL             +  + +   ++L
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL-----QNSWQPADISARDSVGNTVL 188

Query: 164 EFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA----GSTSLHYAACGGN 219
                     V               +L LGA +   L +       G T L  AA  G 
Sbjct: 189 HALVEVADNTV---DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 220 AQCCQILIAMGASLTAENANGWTPLMVA 247
                 ++           +       A
Sbjct: 246 IGVLAYILQRE-------IHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (254), Expect = 8e-25
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 51/230 (22%)

Query: 21  VSAARDGDLQEAKALLEYNPRLVRYSTFGVRN---------SPLHYSAAQGHHEIVSLLI 71
           +    +G       LL+   +      F   +         + LH +  + +  +V+LL+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 72  ESGVDINLRN--------------YRGQTALMQACQHGHWEVVLTLI---LYKANIHRAD 114
           E+G D+                  Y G+  L  A       +V  L+      A+I   D
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 115 YLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY----F 170
              G T LH       +          + S+ N    L  K + T  + E   R      
Sbjct: 182 S-VGNTVLHALVEVADNTVDNTKF---VTSMYNEILILGAKLHPTLKLEEITNRKGLTP- 236

Query: 171 HLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN 219
                L L   +G +  +  +L                    H AA   +
Sbjct: 237 -----LALAASSGKIGVLAYILQREIH----------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 96.4 bits (240), Expect = 8e-23
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 39/201 (19%)

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYK-------ANIHRADYLNGGTALHLAA 126
                      + ++  A    + + + +L+ +         +    D   G T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 127 LN---GHSRCIRLLL--ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TL 180
           LN   G +  I LLL  A    S+    N     S   G            +  LH+   
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG------------QTALHIAIE 110

Query: 181 NGHVESVQLLLDLGASVSE-----------YLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
             ++  V LL++ GA V                    G   L  AAC       + L+  
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

Query: 230 G---ASLTAENANGWTPLMVA 247
               A ++A ++ G T L   
Sbjct: 171 SWQPADISARDSVGNTVLHAL 191

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (266), Expect = 8e-28
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 29/144 (20%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  +A  G  + V +L+ +G D+N ++  G T L  A  HGH E+V  L+   A+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             D   G T LHLAA  GH     +LL   AD      NA +    K  KT         
Sbjct: 75  AVDA-IGFTPLHLAAFIGHLEIAEVLLKHGAD-----VNAQD----KFGKTA-------- 116

Query: 169 YFHLEVLLHL-TLNGHVESVQLLL 191
                    +   NG+ +  ++L 
Sbjct: 117 -------FDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  100 bits (252), Expect = 9e-26
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)

Query: 20  LVSAARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV 75
           L+ AAR G   E + L+      N +      +G   +PL+ + A GH EIV +L+++G 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAK----DEYG--LTPLYLATAHGHLEIVEVLLKNGA 71

Query: 76  DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIR 135
           D+N  +  G T L  A   GH E+   L+ + A+++  D   G TA  ++  NG+     
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAE 130

Query: 136 LLL 138
           +L 
Sbjct: 131 ILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.1 bits (212), Expect = 4e-20
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 64/178 (35%)

Query: 70  LIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG 129
               G D+          L++A + G  + V  L+   A+++  D   G T L+LA  +G
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHG 58

Query: 130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQL 189
                                                    HLE+            V++
Sbjct: 59  -----------------------------------------HLEI------------VEV 65

Query: 190 LLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           LL  GA V+    V   G T LH AA  G+ +  ++L+  GA + A++  G T   ++
Sbjct: 66  LLKNGADVNA---VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 198 SEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           S +    G+     L  AA  G     +IL+A GA + A++  G TPL +A
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (269), Expect = 1e-27
 Identities = 28/230 (12%), Positives = 53/230 (23%), Gaps = 63/230 (27%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRY---STFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           + +AA  G  ++   L E           S        L  +  +  ++I   LI  G D
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILY--DVLRNNNDEARYKISMFLINKGAD 67

Query: 77  INLRNYRGQTALMQACQHGHWEVVLT------LILYKANIHRADYLNGGTALHLAALNGH 130
           I  R   G T      Q G  ++  T       +   A+I           +     N  
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNY- 125

Query: 131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLL 190
                                                          +  N  +   +L+
Sbjct: 126 ----------------------------------------------FVDENEMIPLYKLI 139

Query: 191 LD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN 239
               G  +         G T+L +          +++         +  +
Sbjct: 140 FSQSGLQLLI---KDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  105 bits (265), Expect = 4e-27
 Identities = 25/217 (11%), Positives = 51/217 (23%), Gaps = 61/217 (28%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYR---GQTALMQACQHGHWEVVLTLILYKAN 109
             +  +A  G +E    L E G +      +       L        +++ + LI   A+
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 110 IHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
           I       G T        G                                        
Sbjct: 68  IKSRTK-EGTTLFFPLFQGG---------------------------------------- 86

Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ----- 224
                     + G  E  ++ L+ GA ++   ++       +            +     
Sbjct: 87  -------GNDITGTTELCKIFLEKGADIT---ALYKPYKIVVFKNIFNYFVDENEMIPLY 136

Query: 225 --ILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
             I    G  L  ++  G T L   +   +     ++
Sbjct: 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 26/141 (18%)

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
           ++ ++    +  AA+ G       L            ++               +     
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK------GYEDKESV-----------LKSNILY 43

Query: 173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN------AQCCQIL 226
           +VL +       +    L++ GA +      +  G+T       GG        + C+I 
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

Query: 227 IAMGASLTAENANGWTPLMVA 247
           +  GA +TA        +   
Sbjct: 101 LEKGADITALYKPYKIVVFKN 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (264), Expect = 1e-27
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           +    ++   G  + V   +  G D+N     G+  L  A   G  E++  L+L  A+I+
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLA 139
             D  +  T L  A   GH  C++LLL+
Sbjct: 68  APDK-HHITPLLSAVYEGHVSCVKLLLS 94

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  103 bits (260), Expect = 4e-27
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
            S          + A ++GDL E K  +     + R    G    PLHY+A  G  EI+ 
Sbjct: 4   GSMCDKE----FMWALKNGDLDEVKDYVAKGEDVNRTLEGG--RKPLHYAADCGQLEILE 57

Query: 69  LLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN 128
            L+  G DIN  +    T L+ A   GH   V  L+   A+       +G TA       
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQ 116

Query: 129 GH 130
             
Sbjct: 117 AI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 34/147 (23%)

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE 173
                   A  NG    ++  +    D      N        + + G             
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-----VNR-------TLEGGRK----------- 42

Query: 174 VLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
             LH     G +E ++ LL  GA ++          T L  A   G+  C ++L++ GA 
Sbjct: 43  -PLHYAADCGQLEILEFLLLKGADINA---PDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98

Query: 233 LTAENANGWTPLMVARSWHRTGLEDIL 259
            T +  +G T            ++ +L
Sbjct: 99  KTVKGPDGLTAFEAT---DNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVV 100
           PL  +  +GH   V LL+  G D  ++   G TA           ++
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  103 bits (259), Expect = 4e-27
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  GH E V  L+  G D+N R+  G T L  A ++GH E+V  L+   A+++  
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL 138
              +G T  HLA  NGH   ++LL 
Sbjct: 72  SK-DGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.7 bits (224), Expect = 4e-22
 Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 59/171 (34%)

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
           G      +  G T L  A ++GH E V  L+   A+++     +G T LHLAA NG    
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNG---- 53

Query: 134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
                                                H E+            V+LLL  
Sbjct: 54  -------------------------------------HAEI------------VKLLLAK 64

Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
           GA V+     S  G+T  H A   G+ +  ++L A GA + A +       
Sbjct: 65  GADVNA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 5e-21
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  GH EIV LL+  G D+N R+  G T    A ++GH E+V  L    A+++  
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 114 DYLNGGTALH 123
            +       H
Sbjct: 105 SW-GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 176 LHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LH    NGH E V+ LL  GA V+     S  G+T LH AA  G+A+  ++L+A GA + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNA---RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 235 AENANGWTPLMVA 247
           A + +G TP  +A
Sbjct: 70  ARSKDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQ 90
           P H +   GHHEIV LL   G D+N R++        
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.8 bits (123), Expect = 2e-08
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           G+T LH AA  G+A+  + L++ GA + A + +G TPL +A
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (257), Expect = 4e-27
 Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  GH E+V LL+E+G D+N ++  G+T L  A ++GH EVV  L+   A+++  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 114 DYLNGGTALHLAALNGHSRCIRLLL 138
           D  NG T LHLAA NGH   ++LLL
Sbjct: 65  DK-NGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
           PLH +A  GH E+V LL+E+G D+N ++  G+T L  A ++GH EVV  L+   A
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 57/148 (38%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
           G+T L  A ++GH EVV  L+   A+++  D  NG T LHLAA NG              
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNG-------------- 46

Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV 203
                                      HLEV            V+LLL+ GA V+     
Sbjct: 47  ---------------------------HLEV------------VKLLLEAGADVNA---K 64

Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGA 231
              G T LH AA  G+ +  ++L+  GA
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 176 LHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           LHL   NGH+E V+LLL+ GA V+        G T LH AA  G+ +  ++L+  GA + 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 235 AENANGWTPLMVA 247
           A++ NG TPL +A
Sbjct: 63  AKDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.4 bits (122), Expect = 2e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
           G T LH AA  G+ +  ++L+  GA + A++ NG TPL +A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  106 bits (265), Expect = 1e-25
 Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 43/258 (16%)

Query: 22  SAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN 81
                  L     LL  +  +               +A  GH  +++ L E      +  
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVKVIQAEN--YQAFRLAAENGHLHVLNRLCELAPTEIMAM 158

Query: 82  YR--GQTALMQACQHGHWEVVLTLILYKANIHRADY-LNGGTALHLAAL-NGHSRCIRLL 137
            +     A   A ++GH  V+  L         A        A   AA+  GH   I  L
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

Query: 138 L---ADYIPSVPNA--------WNRLRKKSNKTGSI---LEFDERYFHLEVL-------- 175
           L        +  +            + +  N+   +    +        +++        
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 278

Query: 176 ---LHL----TLNGHVESVQLLLDL-----GASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
              L           ++ ++ LL +      A  +    + G  +  L  A   GN   C
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT---IPGDANELLRLALRLGNQGAC 335

Query: 224 QILIAMGASLTAENANGW 241
            +L+++ + L    AN +
Sbjct: 336 ALLLSIPSVLALTKANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 5e-24
 Identities = 32/235 (13%), Positives = 54/235 (22%), Gaps = 55/235 (23%)

Query: 58  SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD-YL 116
           +      + + LL+ S   + +       A   A ++GH  V+  L         A    
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161

Query: 117 NGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNR--LRKKSNKTGSILEFDERYFH 171
               A  LAA NGH   +  L         ++  A N    R  +   G          H
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG----------H 211

Query: 172 LEVLLHL--------------TLNGHVESVQLLLDLG------------ASVSEYLSV-- 203
             V+  L                 G       +                ++      +  
Sbjct: 212 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271

Query: 204 ---SGAGSTSLHYAACGGNAQCCQIL--------IAMGASLTAENANGWTPLMVA 247
                 G   L       +      +        I   A       +    L +A
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 37/192 (19%)

Query: 62  GHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTA 121
            + E + + +    ++       Q   +    + H+      +   A+            
Sbjct: 45  SYKEAIHIFLPGTKNME------QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVI 95

Query: 122 LHLAALNGHSRC---IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL 178
             +AA+ G S     + LLL      +           N                    L
Sbjct: 96  CFVAAITGCSSALDTLCLLLT--SDEIVKVIQ----AENYQA---------------FRL 134

Query: 179 -TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
              NGH+  +  L +L  +    + +      +   AA  G+      L  +  +     
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193

Query: 238 --ANGWTPLMVA 247
             A  +     A
Sbjct: 194 IQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 17/105 (16%)

Query: 42  LVRYSTFGVRNSPLHYSAAQGHHEIVSLL--------IESGVDINLRNYRGQTALMQACQ 93
           LV  S        L     +    ++  +        I++              L  A +
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328

Query: 94  HGHWEVVLTLILYKA--------NIHRADYLNGGTALHLAALNGH 130
            G+      L+   +        N +  +   G   L   AL  H
Sbjct: 329 LGNQGACALLLSIPSVLALTKANNYYINET-GGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 8e-09
 Identities = 27/234 (11%), Positives = 50/234 (21%), Gaps = 81/234 (34%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ------------------ 61
              AA +G L     L E  P                ++A                    
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 62  ---------GHHEIVSLLIESGVDINLRNY--------------------RGQTALMQAC 92
                    G   +   +      +   +                     +G   L    
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286

Query: 93  QHGHWEVV--------LTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPS 144
           +     ++        +  I   A        +    L LA   G+     LLL     S
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGACALLL-----S 340

Query: 145 VPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLT-LNGHVESVQLLLDLGASV 197
           +P +   L K +N                   ++    G ++   + L+     
Sbjct: 341 IP-SVLALTKANN------------------YYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
           N  L  +   G+    +LL+     + L               G  ++    + +  + H
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVALEHHHHHH 376

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (250), Expect = 2e-24
 Identities = 41/259 (15%), Positives = 67/259 (25%), Gaps = 59/259 (22%)

Query: 18  ERLVSAARDGDLQEAKALLEY--------NPRLVRYSTFGVRNSPLHYSAAQ---GHHEI 66
             L      G     + LL +             R  + G   + L  +      G ++ 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG--KTCLPKALLNLSAGRNDT 64

Query: 67  VSLLIESG-----------VDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD- 114
           + +L++                    YRGQTAL  A +      V  L+   A++H    
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 115 ------------YLNGGTALHLAALNGHSRCIRLLLADYIPSV-PNAWNRLRKKSNKTGS 161
                       +  G   L LAA       +  L  +          +        T  
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD----SRGNTV- 179

Query: 162 ILEFDERYFHLEVL----LHLTLNGHVESVQLLLDLGASVSEYLSVSGA----GSTSLHY 213
                    H  V              +   LLL   A +    ++       G + L  
Sbjct: 180 --------LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 214 AACGGNAQCCQILIAMGAS 232
           AA  G     Q +I    +
Sbjct: 232 AAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.0 bits (239), Expect = 9e-23
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 53/236 (22%)

Query: 54  PLHYSAAQG----HHEIVSLLIESGVDINLRNYR----GQTALMQA---CQHGHWEVVLT 102
            L    ++G       ++S L+     +    +R    G+T L +A      G  + +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 103 LI-----------LYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNA 148
           L+              +      Y  G TALH+A        + LL+   AD      +A
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHYVELLVEKGAD-----VHA 121

Query: 149 WNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAG 207
                +   +     +    ++  E+ L L         V  L + G   ++       G
Sbjct: 122 -----QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176

Query: 208 STSLHYAACGGN---------AQCCQILIAMGASLTAE-------NANGWTPLMVA 247
           +T LH      +          +   +L+   A L  +       N +G +PLM+A
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 21/112 (18%)

Query: 23  AARDGDLQEAKALLEYNPRLV---RYSTFGVRNSPLHYSAAQGHH---------EIVSLL 70
           AA          L E   +     R  + G  N+ LH   A   +         ++  LL
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRG--NTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 71  IESGVDIN-------LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADY 115
           +     +        L N  G + LM A + G   +   +I  +     A +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 94.6 bits (236), Expect = 6e-24
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  +A  G  + V +L+ +G D+  ++  G T L  A ++GH EVV  L+   A++ 
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 112 RADYLNGGTALHLAALNGHSRCIRLL 137
             D   G TA  ++  NG+     +L
Sbjct: 85  AQDK-FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 88.8 bits (221), Expect = 8e-22
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 59  AAQ-GHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
            +   HH   S L+  G  +          L++A + G  + V  L+   A++   D  N
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-N 56

Query: 118 GGTALHLAALNGHSRCIRLLL 138
           G T LHLAA NGH   ++LLL
Sbjct: 57  GSTPLHLAARNGHLEVVKLLL 77

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.9 bits (185), Expect = 7e-17
 Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 60/169 (35%)

Query: 91  ACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWN 150
              H H      L+   +++      + G  L  AA  G                     
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQ-------------------- 36

Query: 151 RLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS 210
                                 +             V++L+  GA V+        GST 
Sbjct: 37  ---------------------DDE------------VRILMANGADVAA---KDKNGSTP 60

Query: 211 LHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           LH AA  G+ +  ++L+  GA + A++  G T   ++       L +IL
Sbjct: 61  LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 51  RNSPLHYSAAQGHH---EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
               LH +    +     +V  +I++G  ++ +   G TAL  A  +   + +  L+  +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLL 137
           A +   +   G TAL +A    H  C  LL
Sbjct: 250 ALVGTVNE-AGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 21  VSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLR 80
           V  A    L     +++    L   +  G  N+ LHY+A     + + LL++    +   
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADG--NTALHYAALYNQPDCLKLLLKGRALVGTV 255

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKAN 109
           N  G+TAL  A +  H E    L   +A 
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMV 246
           V  ++  G  +    + +  G+T+LHYAA      C ++L+   A +   N  G T L +
Sbjct: 209 VDFIIQNGGHLD---AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 247 ARSWHRTGLEDIL 259
           AR  H    E++L
Sbjct: 266 ARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 84  GQTALMQACQHGHWEVVLT---LILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            +  L  A +  +   +     +I    ++      +G TALH AAL     C++LLL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLL 246

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 181 NGHVESVQLLLDLGASVSEYLS---VSGAGSTSLHYAACGGNAQC---CQILIAMGASLT 234
           N  + SV      G    + L            LH A    N         +I  G  L 
Sbjct: 161 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD 220

Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
           A+ A+G T L  A  +++     +L
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLL 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.3 bits (164), Expect = 8e-13
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 14  SASGERLVSAARDGDLQEAKALL----EYNPRLVRYSTFGVRNSPLHYSAAQGHH---EI 66
           +A    L  A +  D+           +   ++   +      + LH +          I
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V  L+++  +++ +  +G TAL   C   + E +  L+  KA+I  A+  +G T L +A 
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAK 246

Query: 127 LNGHSRCIRLLL 138
              H  C  LL 
Sbjct: 247 RLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
           ++ LHY     + E + LL+     I + N  G+T L  A +  H      L    + 
Sbjct: 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 8e-09
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 175 LLHLTLN----GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG 230
            LHL +       +  V  L+    ++      +G GST+LHY     NA+C ++L+   
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLD---KQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 231 ASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRL 267
           AS+   N +G TPL +A+       E++L+    GR 
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 181 NGHVESVQLLLDLGASVSEYLSVSGA---GSTSLHYAACGGNAQC---CQILIAMGASLT 234
              +  +      G  ++E + ++       T+LH A    +         L+    +L 
Sbjct: 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199

Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
            +   G T L             +L
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLL 224

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 13  CSASGERLVSAARDGDLQEAKALL----EYNPRLVRYSTFGVRNSPLHYSAAQGHH---E 65
           C+   +RL +A  + DL           ++   L            LH +    +     
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 66  IVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
           +V  +I++G  ++ +   G TAL  A  +   + +  L+  +A +   +   G TAL +A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIA 247

Query: 126 ALNGHSRCIRLL 137
               H  C  LL
Sbjct: 248 RKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 67  VSLLIESGVDINL------RNYRGQTALMQACQHGHW-EVVLT--LILYKANIHRADYLN 117
           V     +G D              +  L  A +  +   + L   +I    ++      +
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-D 206

Query: 118 GGTALHLAALNGHSRCIRLLL 138
           G TALH AAL     C++LLL
Sbjct: 207 GNTALHYAALYNQPDCLKLLL 227

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
             ++     L      L +   +   +      +PL  + A         L+++G ++N 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
            +  G+  L  A   GH  +    +   A++   D   G   L +A    ++  + LL 
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+ A     L   + LL+    + +  + G    PLH++   GH  +  L ++ G D+  
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAG--RGPLHHATILGHTGLACLFLKRGADLGA 296

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT 120
           R+  G+  L  A +  + ++V  L L K     A     G 
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD 337

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
           L+  T    + + + LL  GA+V+       AG   LH+A   G+     + +  GA L 
Sbjct: 239 LIQATAANSLLACEFLLQNGANVN---QADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 235 AENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPS 272
           A ++ G  PL +A       +  +L        E    
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
              + ++   L  GA V+ +++     +T L  A    +   C+ L+  GA++   ++ G
Sbjct: 210 PPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG 268

Query: 241 WTPLMVARSWHRTGLEDIL 259
             PL  A     TGL  + 
Sbjct: 269 RGPLHHATILGHTGLACLF 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 53/374 (14%), Positives = 96/374 (25%), Gaps = 115/374 (30%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L+S  +    Q +     Y  +  R        +  + S  Q + ++   L+E      L
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE------L 147

Query: 80  RNYR----------GQTAL-MQACQ----------HGHWEVVLTLILYKANIHRADYLNG 118
           R  +          G+T + +  C              W   L L     N +  + +  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNL----KNCNSPETV-- 198

Query: 119 GTALHLAALNGHSRCIRLLLADYIPSVP-------NAWNRLRKKSNKTGSILEFDE---- 167
                L  L           +D+  ++            RL K       +L        
Sbjct: 199 --LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 168 ---RYFHLE--VLL-----------------HLTLNGHV------ESVQLLLDLGASVSE 199
                F+L   +LL                 H++L+ H       E   LL        +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LK 309

Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           YL         L       N +     +++ A    +    W        W     + + 
Sbjct: 310 YLDCR---PQDLPREVLTTNPR----RLSIIAESIRDGLATWDN------WKHVNCDKLT 356

Query: 260 STQPEGRLEVLPSP-----YLALPLMSI----VKIAR---ECGWRNSDSLSTCPDPCVVC 307
           +   E  L VL        +  L   S+      I        W +     +     V  
Sbjct: 357 TII-ESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNK 410

Query: 308 LERKCTVAAKGCDH 321
           L +   V  +  + 
Sbjct: 411 LHKYSLVEKQPKES 424

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 11/63 (17%)

Query: 302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD 361
             C +C E    V  + C H  CT C      +               CP CR  I   +
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-----------CPFCRCEIKGTE 381

Query: 362 KLP 364
            + 
Sbjct: 382 PIV 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.68
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.62
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.52
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.35
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.3
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.29
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.23
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.2
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.09
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.04
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.03
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.03
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.03
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.01
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.0
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.98
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.98
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.96
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.95
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.94
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.94
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.9
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.89
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.89
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.88
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.88
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.87
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.82
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.81
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.8
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.77
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.76
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.73
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.7
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.69
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.64
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.64
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.64
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.63
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.59
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.57
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.48
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.39
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.36
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.28
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.28
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.18
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.17
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	97.05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.91
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.86
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.58
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.47
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	96.45
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.4
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.26
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.07
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	95.71
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	95.38
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	94.67
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	94.59
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	92.25
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	90.08
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.11
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	84.33

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.3e-39  Score=292.49  Aligned_cols=225  Identities=26%  Similarity=0.323  Sum_probs=201.1

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++|+.|++.|+++.+++|++.++.... ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            567899999999999999999998866432 3345679999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV  174 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++.....                    ....+.++
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--------------------~~~~g~t~  142 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDA--------------------KDHYDATA  142 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------------CCTTSCCH
T ss_pred             CHHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--------------------cCCCCCcH
Confidence            999999999999999999886 899999999999999999999987543210                    11223445


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchh
Q 014696          175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTG  254 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~  254 (420)
                      +..|+..|+.+++++|+++|++++   .++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..++.+
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  219 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKASTN---IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI  219 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc---ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHH
Confidence            566699999999999999999999   77889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCC
Q 014696          255 LEDILSTQPE  264 (420)
Q Consensus       255 i~~lL~~~~~  264 (420)
                      ++++|.++++
T Consensus       220 i~~lL~~~~a  229 (231)
T 3aji_A          220 LKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHccccc
Confidence            9999987643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-39  Score=297.11  Aligned_cols=227  Identities=19%  Similarity=0.160  Sum_probs=173.0

Q ss_pred             CCCCCHHHHHHHHcC-------------CHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 014696           13 CSASGERLVSAARDG-------------DLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL   79 (420)
Q Consensus        13 ~~~~~~~L~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~   79 (420)
                      ...+.++||.|+..|             +.+++++|++.+++++... +..|.||||+|+..|+.+++++|+++|++++.
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   85 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANI   85 (253)
T ss_dssp             ---------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            346678999999987             9999999999998876532 34579999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccC
Q 014696           80 RNYRGQTALMQACQHGHWEVVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNK  158 (420)
Q Consensus        80 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  158 (420)
                      +|..|+||||+|+..|+.+++++|+++++ +++..+. .|.||||+|+..|+.+++++|++.+....             
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------  151 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADVN-------------  151 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCCTT-------------
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCCCC-------------
Confidence            99999999999999999999999999987 7888776 89999999999999999999998754321             


Q ss_pred             CCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 014696          159 TGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN  237 (420)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d  237 (420)
                              ..+ .+.++++.|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       152 --------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          152 --------AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             --------CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             --------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence                    122 23445556699999999999999999999   778899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          238 ANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       238 ~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      ..|+||+++|+++|+.+++++|......
T Consensus       221 ~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          221 HMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            9999999999999999999999987654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.1e-38  Score=301.52  Aligned_cols=258  Identities=25%  Similarity=0.250  Sum_probs=211.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHh-CCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           16 SGERLVSAARDGDLQEAKALLEY-NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      +.++|+.|++.|+.+.|++|+.. +.+++.  .+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCC--SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence            34789999999999999999986 444433  345679999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhH---HHHh------------------
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAW---NRLR------------------  153 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~---~~~~------------------  153 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++........   ..+.                  
T Consensus       102 g~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~  180 (351)
T 3utm_A          102 GHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH  180 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence            999999999999999999886 999999999999999999999998775432100   0000                  


Q ss_pred             ----h---------hccCCCCchhcccccchhhHHHHHHhc---CCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHc
Q 014696          154 ----K---------KSNKTGSILEFDERYFHLEVLLHLTLN---GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG  217 (420)
Q Consensus       154 ----~---------~~~~~~~~~~~~~~~~~~~~~l~aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~  217 (420)
                          .         ................+.+++..|+..   +..+++++|+++|++++   ..+..|.||||+|+..
T Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~  257 (351)
T 3utm_A          181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAER  257 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC---CcCCCCCCHHHHHHHc
Confidence                0         000000011112223334455556777   55899999999999999   7788999999999999


Q ss_pred             CCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          218 GNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       218 g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      |+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++++.  ....+..+.+|+..
T Consensus       258 g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad--~~~~~~~g~tal~~  319 (351)
T 3utm_A          258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD--PSIISLQGFTAAQM  319 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCChhhh
Confidence            999999999999999999999999999999999999999999999886  33456778888754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-37  Score=289.55  Aligned_cols=249  Identities=23%  Similarity=0.290  Sum_probs=211.0

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      +.++|+.|++.|+++++++|++.+++++... +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            4579999999999999999999998887653 345689999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc-ccchhhH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE-RYFHLEV  174 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  174 (420)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+........           ....... ...+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----------~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-----------TKEDQERLRKGGATA  151 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-----------CCHHHHHTTCCCCCH
T ss_pred             CHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc-----------cHHHHHhhccCCCcH
Confidence            99999999999999999886 999999999999999999999988654321100           0000111 2223445


Q ss_pred             HHHHHhcCCHHHHHHHHHc-CCCcccccccCCCCccHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCHHHHHHH
Q 014696          175 LLHLTLNGHVESVQLLLDL-GASVSEYLSVSGAGSTSLHYAACGGN----AQCCQILIAMGASLTAENANGWTPLMVARS  249 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~g~TpLh~Aa~~g~----~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  249 (420)
                      +..|+..|+.+++++|++. |++++   ..+..|.||||+|+..++    .+++++|+++|++++.+|..|+||||+|+.
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~---~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~  228 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTT---CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCC---ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            5666999999999999997 99999   778899999999999999    999999999999999999999999999999


Q ss_pred             cCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          250 WHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       250 ~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      .|+.+++++|++....+.. ..+..+.+|++.
T Consensus       229 ~~~~~~v~~Ll~~~g~~~~-~~~~~g~t~l~~  259 (285)
T 1wdy_A          229 KKHLGLVQRLLEQEHIEIN-DTDSDGKTALLL  259 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHH
T ss_pred             cCCHHHHHHHHhccCCCcc-ccCCCCCcHHHH
Confidence            9999999999984333233 346677777754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=295.16  Aligned_cols=239  Identities=21%  Similarity=0.199  Sum_probs=182.3

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCC---------cccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCC
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPR---------LVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQ   85 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~---------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~   85 (420)
                      .+.++||.|+..|+.+.+..++..++.         -.....+..|+||||+|+..|+.+++++|++.|++++.+|..|+
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~   93 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV   93 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCC
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            556889999999998888877665432         11223455679999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhc
Q 014696           86 TALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF  165 (420)
Q Consensus        86 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (420)
                      ||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+....                    
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------------  152 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQ--------------------  152 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSS--------------------
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCCC--------------------
Confidence            999999999999999999999999999886 89999999999999999999998754321                    


Q ss_pred             ccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHH
Q 014696          166 DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLM  245 (420)
Q Consensus       166 ~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~  245 (420)
                       ....+.+++..|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++. |..|+||||
T Consensus       153 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~  227 (285)
T 3d9h_A          153 -PESDLASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLH  227 (285)
T ss_dssp             -CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTT---CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHH
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHH
Confidence             11224456666799999999999999999998   7788999999999999999999999999999994 889999999


Q ss_pred             HHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          246 VARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       246 ~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      +|+..|+.+++++|++++..  ....+..+.+|++.
T Consensus       228 ~A~~~~~~~~v~~Ll~~gad--~~~~d~~g~t~l~~  261 (285)
T 3d9h_A          228 AVVRTASEELACLLMDFGAD--TQAKNAEGKRPVEL  261 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCGGGG
T ss_pred             HHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHH
Confidence            99999999999999998775  23356677777753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-38  Score=289.63  Aligned_cols=226  Identities=29%  Similarity=0.341  Sum_probs=195.9

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHH----hCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLE----YNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALM   89 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~   89 (420)
                      ..+.++||.|++.|+.+++++|++    .+.+++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|+||||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN--NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   84 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc--ccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            456789999999999999999997    566665544  45689999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHcCC----CCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhc
Q 014696           90 QACQHGHWEVVLTLILYKA----NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF  165 (420)
Q Consensus        90 ~A~~~g~~~iv~~Ll~~ga----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (420)
                      +|+..|+.+++++|+++++    +++..+. .|.||||+|+..|+.+++++|++.+.....                   
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------------------  144 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGADIDA-------------------  144 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcCCCccc-------------------
Confidence            9999999999999999988    7777775 899999999999999999999987543211                   


Q ss_pred             ccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHH
Q 014696          166 DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLM  245 (420)
Q Consensus       166 ~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~  245 (420)
                      .....+.++++.|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||+
T Consensus       145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  221 (241)
T 1k1a_A          145 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN---AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  221 (241)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            011224455666699999999999999999999   77889999999999999999999999999999999999999999


Q ss_pred             HHHHcCchhHHHHhhhCCC
Q 014696          246 VARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       246 ~A~~~g~~~i~~lL~~~~~  264 (420)
                      +|+..|+.++++.|.+.++
T Consensus       222 ~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          222 VARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TCSSHHHHHHHTC------
T ss_pred             HHHhcCcHHHHhhhccCCC
Confidence            9999999999999988754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.4e-38  Score=283.74  Aligned_cols=222  Identities=24%  Similarity=0.291  Sum_probs=197.1

Q ss_pred             cCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHH
Q 014696           12 GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA   91 (420)
Q Consensus        12 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A   91 (420)
                      ....+.++||.|+..|+.+++++|++++.+++..+.  .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC--CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence            345677899999999999999999999988776554  458999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcC-CCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-
Q 014696           92 CQHGHWEVVLTLILYK-ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-  169 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~g-a~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (420)
                      +..|+.+++++|++++ .+++..+. .|.||||+|+..|+.+++++|++++....                     ..+ 
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------------~~~~  142 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDIN---------------------IRDN  142 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------------CCCT
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------------------ccCC
Confidence            9999999999999998 78888876 89999999999999999999998754321                     122 


Q ss_pred             chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHH
Q 014696          170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS  249 (420)
Q Consensus       170 ~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  249 (420)
                      .+.+++..|+..|+.+++++|+++|++++   ..+..|.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILLAAKCDLH---AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            23345555699999999999999999999   778899999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHhh
Q 014696          250 WHRTGLEDILS  260 (420)
Q Consensus       250 ~g~~~i~~lL~  260 (420)
                      +++.+.+..|.
T Consensus       220 ~~~~~~~~~l~  230 (237)
T 3b7b_A          220 NSQVWSALQMS  230 (237)
T ss_dssp             TCHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99986555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-37  Score=289.18  Aligned_cols=226  Identities=23%  Similarity=0.263  Sum_probs=201.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++||.|+..|+.+++++|++.+++++..+.  .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus        38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKK--NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            456899999999999999999999988776544  468999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccc---------cCCCChHHHHHHHcCCHHHHHHHHHh-cCCCChhhHHHHhhhccCCCCchh
Q 014696           95 GHWEVVLTLILYKANIHRAD---------YLNGGTALHLAALNGHSRCIRLLLAD-YIPSVPNAWNRLRKKSNKTGSILE  164 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~---------~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (420)
                      |+.+++++|+++|++++..+         +..|.||||+|+..|+.+++++|++. +....                   
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-------------------  176 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-------------------  176 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-------------------
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-------------------
Confidence            99999999999999998772         23799999999999999999999975 32111                   


Q ss_pred             cccccchhhHHHHHHhcCC----HHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHH-hCCCccccccC
Q 014696          165 FDERYFHLEVLLHLTLNGH----VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA-MGASLTAENAN  239 (420)
Q Consensus       165 ~~~~~~~~~~~l~aa~~g~----~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~-~gad~~~~d~~  239 (420)
                       .....+.+++++|+..++    .+++++|+++|++++   .++..|.||||+|+..|+.+++++|++ .|++++.+|..
T Consensus       177 -~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~  252 (285)
T 1wdy_A          177 -ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  252 (285)
T ss_dssp             -CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS---CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT
T ss_pred             -ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC---CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCC
Confidence             111224455666688888    999999999999999   778899999999999999999999999 79999999999


Q ss_pred             CCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          240 GWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       240 G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      |+||||+|+++|+.+++++|+++++.
T Consensus       253 g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          253 GKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999876

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.9e-38  Score=292.20  Aligned_cols=222  Identities=23%  Similarity=0.306  Sum_probs=196.7

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Q 014696           13 CSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQAC   92 (420)
Q Consensus        13 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~   92 (420)
                      ...+.++||.|+..|+.++|++|++.+.+++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA--DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT--TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34667899999999999999999999988876554  4589999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-ch
Q 014696           93 QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FH  171 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  171 (420)
                      ..|+.+++++|+++|++++..+  .|.||||+|+..|+.+++++|++.+...                     +..+ .+
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---------------------~~~d~~g  190 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGNI---------------------DHKISHL  190 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHTTCCT---------------------TCCBTTT
T ss_pred             HcCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC---------------------CCcCCCC
Confidence            9999999999999999998655  5999999999999999999999875422                     1122 23


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcC
Q 014696          172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH  251 (420)
Q Consensus       172 ~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  251 (420)
                      .+++..|+..|+.+++++|+++|++++   . +..|.||||+|+..|+.+++++|+++|+|++.+|.+|+|||++|+  +
T Consensus       191 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~  264 (285)
T 3d9h_A          191 GTPLYLACENQQRACVKKLLESGADVN---Q-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--P  264 (285)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTTCCTT---C-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--T
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCCCCCC---C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--C
Confidence            355556699999999999999999998   3 678999999999999999999999999999999999999999999  5


Q ss_pred             chhHHHHhhhCCCC
Q 014696          252 RTGLEDILSTQPEG  265 (420)
Q Consensus       252 ~~~i~~lL~~~~~~  265 (420)
                      +.+++++|+++...
T Consensus       265 ~~~~~~~Ll~~~~a  278 (285)
T 3d9h_A          265 ESPLAQLFLEREGA  278 (285)
T ss_dssp             TSHHHHHHHHHC--
T ss_pred             ccHHHHHHHHhhcc
Confidence            57899999988444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-37  Score=307.48  Aligned_cols=226  Identities=28%  Similarity=0.335  Sum_probs=163.7

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++||.|+..|+.+++++|++.+.+.+..+.  .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  188 (437)
T 1n11_A          111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH  188 (437)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            3566899999999999999999999887665443  45899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+......                    ...+.+
T Consensus       189 ~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--------------------~~~g~t  247 (437)
T 1n11_A          189 HNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAE--------------------SVQGVT  247 (437)
T ss_dssp             TTCHHHHHHHGGGTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--------------------CTTCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC--------------------CCCCCC
Confidence            9999999999999999988875 8999999999999999999999875432210                    111222


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCch
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRT  253 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  253 (420)
                      ++..|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.
T Consensus       248 ~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  324 (437)
T 1n11_A          248 PLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  324 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcH
Confidence            3333355555555555555555555   4445555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHhhhCCCC
Q 014696          254 GLEDILSTQPEG  265 (420)
Q Consensus       254 ~i~~lL~~~~~~  265 (420)
                      +++++|++++..
T Consensus       325 ~~v~~Ll~~gad  336 (437)
T 1n11_A          325 KLVKFLLQHQAD  336 (437)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCC
Confidence            555555555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-37  Score=304.42  Aligned_cols=261  Identities=26%  Similarity=0.268  Sum_probs=203.6

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++||.|+..|++++|++|++++.+++..+.  .|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV--KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS--CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            3566899999999999999999999988776544  45899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChh---hHHHHhhhc--cCC-------CC
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN---AWNRLRKKS--NKT-------GS  161 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~~--~~~-------~~  161 (420)
                      .|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++......   ....+....  +..       ..
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  168 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  168 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            9999999999999999999886 8999999999999999999999886543210   000110000  000       00


Q ss_pred             chhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 014696          162 ILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG  240 (420)
Q Consensus       162 ~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G  240 (420)
                      ....+..+ .+.+++..|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus       169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            01112222 23344555588888888888888888887   567778889999888888899999998888888888888


Q ss_pred             CCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          241 WTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       241 ~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      +||||+|+..|+.+++++|++.+...  ...+..+.+|++.+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A  285 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPLHLV  285 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHH
Confidence            99999999999999999888876652  23456667776544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-37  Score=289.46  Aligned_cols=244  Identities=20%  Similarity=0.150  Sum_probs=162.3

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcc-cccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQAC   92 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~   92 (420)
                      ..+.++||.|++.|+.++|++|++.+++.. ....+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            466789999999999999999999988743 2334456799999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCcccc------------CCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCC
Q 014696           93 QHGHWEVVLTLILYKANIHRADY------------LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTG  160 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~ga~~~~~~~------------~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  160 (420)
                      ..|+.+++++|++++++......            ..+.++++.+...+....+..++..                    
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  146 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED--------------------  146 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC--------------------
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh--------------------
Confidence            99999999999998876432211            1345555555554443332222210                    


Q ss_pred             Cchhcccccchh-hHHHHHHhcCCHHHHHHHHHcCCCcccccccCC-CCccHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 014696          161 SILEFDERYFHL-EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNAQCCQILIAMGASLTAENA  238 (420)
Q Consensus       161 ~~~~~~~~~~~~-~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~  238 (420)
                      .....+..+..+ ++++.|+..|+.+++++|+++|++++   ..+. .|.||||+|+..|+.++|++|+++|++++.+|.
T Consensus       147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN---KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT---CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence            011122222233 34444577788888888888888887   4443 488888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          239 NGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       239 ~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      .|+||||+|+.+|+.+++++|+++++..  ...+..+.+|+..+
T Consensus       224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSSS  265 (282)
T ss_dssp             TSCCHHHHHHTSSCHHHHHHHHHTTCCC--CCCC----------
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHcCCCc--CcCCCccccccccc
Confidence            8888888888888888888888887762  23466666666544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=295.27  Aligned_cols=217  Identities=25%  Similarity=0.315  Sum_probs=165.5

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcc------cccCCCCCCcHHHHHHHcCcHH-HHHHHHHcCCCCCCccCCCCCHH
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLV------RYSTFGVRNSPLHYSAAQGHHE-IVSLLIESGVDINLRNYRGQTAL   88 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~------~~~~~~~g~t~Lh~Aa~~g~~~-iv~~Ll~~g~~v~~~d~~g~TpL   88 (420)
                      +.++|+.|++.|++++|++|++.++...      ....+..|.||||+|+..++.+ ++++|++.|+++|.+|.+|+|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            3479999999999999999999876532      1223345689999999988764 88999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc
Q 014696           89 MQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER  168 (420)
Q Consensus        89 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                      |+|+..|+.++|++|++.|++++..+. .|.||+++|+..++.+++++|++.+....                     ..
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n---------------------~~  148 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKPN---------------------KK  148 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSC---------------------CC
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCccCC-CCCCccccccccChHHHHHHHHHCCCCCC---------------------CC
Confidence            999999999999999999999999886 99999999999999999999998754321                     12


Q ss_pred             c-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          169 Y-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       169 ~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      + .+.++++.|+..|+.+++++|+++|++++   ..+..|.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn---~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHGASIN---ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT---CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            2 23445566699999999999999999999   7788999999999999999999999999999999999999999999


Q ss_pred             HHcCchhHHHHh
Q 014696          248 RSWHRTGLEDIL  259 (420)
Q Consensus       248 ~~~g~~~i~~lL  259 (420)
                      +++++  ++++|
T Consensus       226 ~~~~~--i~~lL  235 (269)
T 4b93_B          226 EQNSK--IMELL  235 (269)
T ss_dssp             CTTCH--HHHHT
T ss_pred             HhCCc--HHHHH
Confidence            98775  44444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-37  Score=302.27  Aligned_cols=232  Identities=20%  Similarity=0.214  Sum_probs=198.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHH--------HhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCC
Q 014696           15 ASGERLVSAARDGDLQEAKALL--------EYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQT   86 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~T   86 (420)
                      .+.++||.|+..|+.+++++|+        +.+.+++..+.  .|.||||+|+..|+.++|++|+++|++++..|..|.|
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~--~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            5668999999999998888776        67887776544  5689999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcC---CCCCccccCCCChHHHHHHHcC---CHHHHHHHHHhcCCCChhhHHHHhhhccCCC
Q 014696           87 ALMQACQHGHWEVVLTLILYK---ANIHRADYLNGGTALHLAALNG---HSRCIRLLLADYIPSVPNAWNRLRKKSNKTG  160 (420)
Q Consensus        87 pL~~A~~~g~~~iv~~Ll~~g---a~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  160 (420)
                      |||+|+..|+.+++++|++++   ++++..+. .|.||||+|+..+   +.+++++|++++........           
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~-----------  269 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA-----------  269 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG-----------
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc-----------
Confidence            999999999999999999987   78888886 8999999999988   89999999988654432110           


Q ss_pred             Cchhccccc-chhhHHHHHHhcCCHHHHHHHHHcC-CCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 014696          161 SILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLG-ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENA  238 (420)
Q Consensus       161 ~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~  238 (420)
                        ...+..+ .+.++++.|+..|+.+++++|++++ ++++   ..|..|.||||+|+..|+.++|++|+++|++++.+|.
T Consensus       270 --~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          270 --ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD---KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             --GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             --cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence              0111122 3345555669999999999999886 9999   7888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          239 NGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       239 ~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      .|+|||++|+.+|+.+++++|+++++.
T Consensus       345 ~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          345 TDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-37  Score=299.15  Aligned_cols=223  Identities=19%  Similarity=0.204  Sum_probs=197.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++||.|+..|+.++|++|++.+.+++..+.  .|.||||+|+..|+.++|++|+++|++++.  ..|.||||+|+..
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~   94 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--FGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA   94 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc
Confidence            456899999999999999999999988876554  568999999999999999999999996664  5799999999999


Q ss_pred             CcHHHHHHHHHc----CCCCCc-----------------cccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCChhhHHH
Q 014696           95 GHWEVVLTLILY----KANIHR-----------------ADYLNGGTALHLAALNG--HSRCIRLLLADYIPSVPNAWNR  151 (420)
Q Consensus        95 g~~~iv~~Ll~~----ga~~~~-----------------~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~  151 (420)
                      |+.++|++|+++    |++++.                 .+. .|.||||+|+..|  +.+++++|++.+.....     
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~-----  168 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTA-----  168 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC-----
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc-----
Confidence            999999999999    888776                 665 8999999999999  99999999987543220     


Q ss_pred             HhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCC-----cccccccCCCCccHHHHHHHcCCHHHHHHH
Q 014696          152 LRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGAS-----VSEYLSVSGAGSTSLHYAACGGNAQCCQIL  226 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~-----~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L  226 (420)
                                     ....+.++++.|+..|+.+++++|+++|++     ++   ..+..|.||||+|+..|+.++|++|
T Consensus       169 ---------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~L  230 (364)
T 3ljn_A          169 ---------------KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD---YANKQGNSHLHWAILINWEDVAMRF  230 (364)
T ss_dssp             ---------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT---CCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred             ---------------cCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc---ccCCCCCcHHHHHHHcCCHHHHHHH
Confidence                           112234556666999999999999999999     77   7788999999999999999999999


Q ss_pred             HHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          227 IAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       227 l~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      +++|+|++.+|..|+||||+|+..|+.+++++|+++++.
T Consensus       231 l~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          231 VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999998765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.2e-37  Score=276.11  Aligned_cols=215  Identities=19%  Similarity=0.145  Sum_probs=184.4

Q ss_pred             CCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHc
Q 014696           27 GDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY  106 (420)
Q Consensus        27 g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  106 (420)
                      |+.+++++|++.+++++... +..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            67888899999988876542 34568999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc-hhhHHHHHHhcCCH
Q 014696          107 KA-NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-HLEVLLHLTLNGHV  184 (420)
Q Consensus       107 ga-~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~aa~~g~~  184 (420)
                      ++ +++..+. .|.||||+|+..|+.+++++|++++....                     ..+. +.++++.|+..|+.
T Consensus        81 ~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------------~~~~~g~t~L~~A~~~~~~  138 (223)
T 2f8y_A           81 RATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADVN---------------------AVDDLGKSALHWAAAVNNV  138 (223)
T ss_dssp             TTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------CBCTTSCBHHHHHHHTTCH
T ss_pred             CCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCCCc---------------------CcCCCCCcHHHHHHHcCCH
Confidence            87 7777665 89999999999999999999998643321                     1122 33455556899999


Q ss_pred             HHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          185 ESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       185 ~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      +++++|+++|++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+++++.+++++|++++.
T Consensus       139 ~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          139 DAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHHHHHHTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCC---CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999999   778899999999999999999999999999999999999999999999999999999999988


Q ss_pred             Ccc
Q 014696          265 GRL  267 (420)
Q Consensus       265 ~~~  267 (420)
                      ...
T Consensus       216 ~~~  218 (223)
T 2f8y_A          216 VRS  218 (223)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-36  Score=291.07  Aligned_cols=293  Identities=22%  Similarity=0.262  Sum_probs=219.6

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      +.++|+.|++.||+++|++||++|++++..+. ..|+||||+|+..|+.++|++|+++|++++.++..+.++++.++..+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~-~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            35789999999999999999999999886543 34689999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc-cchhhH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER-YFHLEV  174 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  174 (420)
                      ...++..+++.+++++..+. .|.||||+|+..|+.+++++|++++.......           ......... ..+.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~-----------~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-----------KTKEDQERLRKGGATA  171 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------CCC-----CTTCSCCH
T ss_pred             cchhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh-----------ccccccccccCCCCcH
Confidence            99999999999999999986 99999999999999999999999876432110           001111111 223345


Q ss_pred             HHHHHhcCCHHHHHHHHH-cCCCcccccccCCCCccHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCHHHHHHH
Q 014696          175 LLHLTLNGHVESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGN----AQCCQILIAMGASLTAENANGWTPLMVARS  249 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~-~ga~~~~~~~~~~~g~TpLh~Aa~~g~----~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  249 (420)
                      ++.|+..|+.++|++|++ .|++++   ..+..|.|+||.++..++    .+++++|+++|+++|.+|..|+||||+|+.
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n---~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~  248 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  248 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTT---CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcC---ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            555688899999998885 588888   677788888887776543    357888888888888888888888888888


Q ss_pred             cCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCCCCCCCCCcccccCccceEEEeCCCcccchhhHH
Q 014696          250 WHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHEFCTQCAL  329 (420)
Q Consensus       250 ~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~~~~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~  329 (420)
                      .|+.+++++|++....+... .+..+.||++    +|.+.|+.++++++.+.+.-+-+.  .....|...||..+++.++
T Consensus       249 ~~~~~~v~~Ll~~~~~~vn~-~d~~G~TpL~----~A~~~g~~~iv~~Ll~~GAd~n~~--~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          249 KKHLGLVQRLLEQEHIEIND-TDSDGKTALL----LAVELKLKKIAELLCKRGASTDCG--DLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             TTCHHHHHHHHTSTTCCTTC-BCTTSCBHHH----HHHHTTCHHHHHHHHTTSCSSTTC--CHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHhcCCcccC-cCCCCCCHHH----HHHHcCCHHHHHHHHHCCCCCCCC--CHHHHHHHcCCHHHHHHHH
Confidence            88888888888765443333 4566777765    345555555544432221111111  1233445567776666554


Q ss_pred             HH
Q 014696          330 YL  331 (420)
Q Consensus       330 ~l  331 (420)
                      ..
T Consensus       322 ~~  323 (337)
T 4g8k_A          322 SH  323 (337)
T ss_dssp             HT
T ss_pred             HC
Confidence            43

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.4e-37  Score=275.36  Aligned_cols=218  Identities=24%  Similarity=0.286  Sum_probs=188.9

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcC--CCCCC-ccCCCCCHHHHHH
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESG--VDINL-RNYRGQTALMQAC   92 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g--~~v~~-~d~~g~TpL~~A~   92 (420)
                      +.++||.|++.|+.+++++|++.++..... .+..|+||||+|+..|+.+++++|+++|  .+++. .+..|+||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            357999999999999999999999776542 3445799999999999999999999999  55655 7889999999999


Q ss_pred             HcCcHHHHHHHHHcC--CCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-
Q 014696           93 QHGHWEVVLTLILYK--ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-  169 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~g--a~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (420)
                      ..|+.+++++|+++|  ++++..+. .|.||||+|+..|+.+++++|++++....                     ..+ 
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------------~~~~  138 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVR---------------------IKDK  138 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------------CCCT
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCCcc---------------------ccCC
Confidence            999999999999998  88888886 89999999999999999999998754321                     222 


Q ss_pred             chhhHHHHHHhcCCHHHHHHHHHcC-CCcccccccCCCCccHHHHHHHcCCHHHHHHHH-HhCCCccccccCCCCHHHHH
Q 014696          170 FHLEVLLHLTLNGHVESVQLLLDLG-ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI-AMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       170 ~~~~~~l~aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll-~~gad~~~~d~~G~TpL~~A  247 (420)
                      .+.+++..|+..|+.+++++|+++| ++++   ..+..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|
T Consensus       139 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          139 FNQIPLHRAASVGSLKLIELLCGLGKSAVN---WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCccccc---CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            2334555569999999999999999 9998   77889999999999999999999999 88999999999999999999


Q ss_pred             HHcCchhHHHHhhhC
Q 014696          248 RSWHRTGLEDILSTQ  262 (420)
Q Consensus       248 ~~~g~~~i~~lL~~~  262 (420)
                      ++.   +++++|+++
T Consensus       216 ~~~---~~~~~l~~~  227 (228)
T 2dzn_A          216 LNE---QVKKFFLNN  227 (228)
T ss_dssp             SST---THHHHHHTT
T ss_pred             HHH---HHHHHHHhc
Confidence            754   677777654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-37  Score=289.46  Aligned_cols=242  Identities=23%  Similarity=0.246  Sum_probs=190.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .++++|+.|+..|+.++|++|++.+++++..+.  .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            456899999999999999999999998876554  468999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhh-------hccCCCCchhccc
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRK-------KSNKTGSILEFDE  167 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  167 (420)
                      |+.++|++|+++|++++..+. .|.||||+|+..++.+++++++................       .............
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            999999999999999999986 99999999999999999999987644332211100000       0000000011111


Q ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       168 ~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      ...+.++++.|+..|+.+++++|+++|++++   ..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVN---IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC---CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            2234455555688889999999999998888   6778889999999999999999999999999988899999999998


Q ss_pred             HHcCchhHHHHhhhC
Q 014696          248 RSWHRTGLEDILSTQ  262 (420)
Q Consensus       248 ~~~g~~~i~~lL~~~  262 (420)
                      ++.....+.+++.+.
T Consensus       273 ~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          273 DEDILGYLEELQKKQ  287 (299)
T ss_dssp             CSGGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            765544444444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1e-36  Score=283.08  Aligned_cols=234  Identities=23%  Similarity=0.179  Sum_probs=174.9

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHH
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIESGVD---INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALH  123 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~---v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~  123 (420)
                      .+..|+||||+|+..|+.++|++|+++|++   ++.+|..|+||||+|+..|+.++|++|+++|++++..+. .|+||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHH
Confidence            345679999999999999999999999988   889999999999999999999999999999999999986 9999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHH-HhcCCHHHHHHHHHcCCCcccccc
Q 014696          124 LAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLS  202 (420)
Q Consensus       124 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a-a~~g~~~~v~~Ll~~ga~~~~~~~  202 (420)
                      +|+..|+.+++++|++++................       ..........+..+ ...........+...+.+++   .
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  153 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ-------DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE---A  153 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------CCCGGGGTT---C
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhccc-------ccCcchhcchhhhccccccchhhhhhhhhhhhcCC---C
Confidence            9999999999999998765433221111110000       00011112222222 33334455566667777887   7


Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccC-CCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN-GWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       203 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~-G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      .+..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+.+|+.+++++|++++...  ...+..+.+|++.
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~tpL~~  231 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPLGS  231 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC--cccccCCCCHHHH
Confidence            7889999999999999999999999999999999865 999999999999999999999997762  3356778888865


Q ss_pred             H--------HHHHHHcCCCC
Q 014696          282 I--------VKIARECGWRN  293 (420)
Q Consensus       282 ~--------l~~a~~~g~~~  293 (420)
                      +        +++..+.|...
T Consensus       232 A~~~~~~~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          232 ALLRPNPILARLLRAHGAPE  251 (282)
T ss_dssp             HHTSSCHHHHHHHHHTTCCC
T ss_pred             HHHcCCcHHHHHHHHcCCCc
Confidence            4        45666666553

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=272.92  Aligned_cols=223  Identities=25%  Similarity=0.319  Sum_probs=194.6

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHc
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY-RGQTALMQACQH   94 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~-~g~TpL~~A~~~   94 (420)
                      +.++|+.|++.|+.+++++|++.+.+++..+.  .|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            44679999999999999999999988766544  468999999999999999999999999986654 499999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhh
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLE  173 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  173 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++...                     +..+ .+.+
T Consensus        87 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---------------------~~~~~~g~t  144 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQDV---------------------DMMDQNGMT  144 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------TCCCTTSCC
T ss_pred             CCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCCc---------------------cccCCCCCc
Confidence            999999999999999999886 8999999999999999999999875322                     1122 2334


Q ss_pred             HHHHHHhcCC-HHHHHHHHHcCCCcccccccCC-CCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcC
Q 014696          174 VLLHLTLNGH-VESVQLLLDLGASVSEYLSVSG-AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH  251 (420)
Q Consensus       174 ~~l~aa~~g~-~~~v~~Ll~~ga~~~~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  251 (420)
                      +++.|+..++ .+++++|++.|++++   ..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|
T Consensus       145 ~l~~a~~~~~~~~~~~~L~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          145 PLMWAAYRTHSVDPTRLLLTFNVSVN---LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             HHHHHHHHCCSSTTHHHHHHTTCCTT---CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHHHhCChHHHHHHHHhcCCCcc---hhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            5555664554 899999999999999   5555 8999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhCCCC
Q 014696          252 RTGLEDILSTQPEG  265 (420)
Q Consensus       252 ~~~i~~lL~~~~~~  265 (420)
                      +.+++++|++.+..
T Consensus       222 ~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          222 NVWMINHLQEARQA  235 (240)
T ss_dssp             CHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHhhhc
Confidence            99999999998765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-35  Score=267.98  Aligned_cols=212  Identities=28%  Similarity=0.360  Sum_probs=186.9

Q ss_pred             cccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHH
Q 014696           44 RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALH  123 (420)
Q Consensus        44 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~  123 (420)
                      ....+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT-TSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHH
Confidence            334555679999999999999999999999999999999999999999999999999999999999999886 8999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccc
Q 014696          124 LAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS  202 (420)
Q Consensus       124 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~  202 (420)
                      +|+..|+.+++++|++.+..                    ..+..+ .+.+++..|+..|+.+++++|+++|++++   .
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~--------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~  139 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQM--------------------DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN---I  139 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC--------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---C
T ss_pred             HHHHcCCHHHHHHHHhCCCC--------------------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---c
Confidence            99999999999999976421                    111122 23445556699999999999999999999   7


Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       203 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++...  ...+..+.+|++.
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t~l~~  216 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV--TLKNKEGETPLQC  216 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT--TCCCTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC--CccCCCCCCHHHH
Confidence            7889999999999999999999999999999999999999999999999999999999998762  3357778888754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.9e-37  Score=285.82  Aligned_cols=216  Identities=18%  Similarity=0.171  Sum_probs=145.9

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++||.|+..|+.++|++|++.+++++..    .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence            35556777777777777777777776665543    24677777777777777777777777777777777777777777


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNG-GTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL  172 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
                      .|+.+++++|+++|++++..+. .| .||||+|+..|+.+++++|++++....                     ....+.
T Consensus       105 ~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------------~~~~g~  162 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---------------------DLAILL  162 (285)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---------------------CCSTHH
T ss_pred             cCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCccc---------------------cccCCc
Confidence            7777777777777777776665 55 677777777777777777776532110                     001233


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH-HHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcC
Q 014696          173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH  251 (420)
Q Consensus       173 ~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp-Lh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  251 (420)
                      ++++.|+..|+.+++++|+++|++++   ..+..|.|| ||+|+..|+.+++++|+++|++++.+|.       .|+..|
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n---~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~  232 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTN---TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLD  232 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC---TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTT
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcC
Confidence            44444577777777777777777776   556667776 7777777777777777777777776663       455667


Q ss_pred             chhHHHHhhhCCCC
Q 014696          252 RTGLEDILSTQPEG  265 (420)
Q Consensus       252 ~~~i~~lL~~~~~~  265 (420)
                      +.+++++|++++..
T Consensus       233 ~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          233 DAEIAKMIIEKHVE  246 (285)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC
Confidence            77777777766543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-35  Score=283.00  Aligned_cols=222  Identities=23%  Similarity=0.294  Sum_probs=192.0

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++||.|+..|+.++|++|++++++++..+.  .|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK--GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3567899999999999999999999998876554  46899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCcccc-----------------------------------------------------CCCCh
Q 014696           94 HGHWEVVLTLILYKANIHRADY-----------------------------------------------------LNGGT  120 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~-----------------------------------------------------~~g~t  120 (420)
                      .|+.+++++|+++|++++..+.                                                     ..|.|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t  213 (351)
T 3utm_A          134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET  213 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC
Confidence            9999999999999999876432                                                     35778


Q ss_pred             HHHHHHHc---CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc-hhhHHHHHHhcCCHHHHHHHHHcCCC
Q 014696          121 ALHLAALN---GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-HLEVLLHLTLNGHVESVQLLLDLGAS  196 (420)
Q Consensus       121 pL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~aa~~g~~~~v~~Ll~~ga~  196 (420)
                      |||+|+..   +..+++++|++.+...                     +..+. +.++++.|+..|+.+++++|+++|++
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~~---------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  272 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRKGANV---------------------NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK  272 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHTTCCT---------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCccHHHHHHHHHHcCCCc---------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999988   5578999998765332                     12222 33455556999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          197 VSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       197 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      ++   .+|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||+++|    +.+++++|.+....
T Consensus       273 ~n---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          273 MN---ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             TT---CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CC---CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            99   7789999999999999999999999999999999999999999998    67899999888665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.9e-36  Score=273.99  Aligned_cols=221  Identities=22%  Similarity=0.231  Sum_probs=162.5

Q ss_pred             CCCCCCcHHHHHHHcC-------------cHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 014696           47 TFGVRNSPLHYSAAQG-------------HHEIVSLLIESGVDINL-RNYRGQTALMQACQHGHWEVVLTLILYKANIHR  112 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g-------------~~~iv~~Ll~~g~~v~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  112 (420)
                      .+..|+||||+|+..|             +.+++++|+++|++++. .|..|+||||+|+..|+.++|++|+++|++++.
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   85 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI   85 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            3456799999999987             89999999999999965 489999999999999999999999999999999


Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc-cchhhHHHHHHhcCCHHHHHHHH
Q 014696          113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER-YFHLEVLLHLTLNGHVESVQLLL  191 (420)
Q Consensus       113 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~aa~~g~~~~v~~Ll  191 (420)
                      .+. .|.||||+|+..|+.+++++|++++...                    .+.. ..+.+++..|+..|+.+++++|+
T Consensus        86 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  144 (253)
T 1yyh_A           86 QDN-MGRTPLHAAVSADAQGVFQILIRNRATD--------------------LDARMHDGTTPLILAARLAVEGMLEDLI  144 (253)
T ss_dssp             CCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSC--------------------TTCCCTTCCCHHHHHHHHTCSSHHHHHH
T ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC--------------------ccccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            986 9999999999999999999999864311                    1112 22344556669999999999999


Q ss_pred             HcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCC
Q 014696          192 DLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLP  271 (420)
Q Consensus       192 ~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~  271 (420)
                      ++|++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++..  ...
T Consensus       145 ~~g~~~~---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~  219 (253)
T 1yyh_A          145 NSHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR--DIT  219 (253)
T ss_dssp             HTTCCTT---CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCC
T ss_pred             HcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc--ccc
Confidence            9999999   77889999999999999999999999999999999999999999999999999999999998762  335


Q ss_pred             CCCCCchHHHHHHHHHHcCCCCCCCC
Q 014696          272 SPYLALPLMSIVKIARECGWRNSDSL  297 (420)
Q Consensus       272 ~~~~~~pl~~~l~~a~~~g~~~~~~~  297 (420)
                      +..+.+|+    ++|.+.|+.+++.+
T Consensus       220 d~~g~tpl----~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          220 DHMDRLPR----DIAQERMHHDIVRL  241 (253)
T ss_dssp             CTTCCCHH----HHHHHTTCHHHHHH
T ss_pred             ccCCCCHH----HHHHHcCCHHHHHH
Confidence            66777775    56777887766544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.5e-35  Score=280.64  Aligned_cols=239  Identities=23%  Similarity=0.252  Sum_probs=196.6

Q ss_pred             cccccccCcccCC---CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 014696            2 KFLSIVGNSFGCS---ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN   78 (420)
Q Consensus         2 ~~l~~~g~~~~~~---~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~   78 (420)
                      ++|...|.+.-..   .+.||||.|+..|+.++|++|++++++++..+.  .+.++++.++..++..++..+++.+++++
T Consensus        42 ~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (337)
T 4g8k_A           42 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK--NGATPFILAAIAGSVKLLKLFLSKGADVN  119 (337)
T ss_dssp             HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc--CCCchhHHHHhcccchhhHHhhhccchhh
Confidence            4555556554322   356899999999999999999999998877654  45899999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc---------CCCChHHHHHHHcCCHHHHHHHHHh-cCCCChhh
Q 014696           79 LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADY---------LNGGTALHLAALNGHSRCIRLLLAD-YIPSVPNA  148 (420)
Q Consensus        79 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---------~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~  148 (420)
                      ..|..|.||||+|+..|+.+++++|+++|++++....         ..|.||||+|+..|+.++|++|+++ +....   
T Consensus       120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n---  196 (337)
T 4g8k_A          120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN---  196 (337)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT---
T ss_pred             hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC---
Confidence            9999999999999999999999999999999875432         2589999999999999999999964 22111   


Q ss_pred             HHHHhhhccCCCCchhcccccchhhHHHHHHhc---CC-HHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHH
Q 014696          149 WNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN---GH-VESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ  224 (420)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~---g~-~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~  224 (420)
                                       .....+.+++++++..   +. ..++++|+++|++++   .++..|.||||+|+..|+.++++
T Consensus       197 -----------------~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n---~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          197 -----------------ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---VRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             -----------------CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT---CCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             -----------------ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHhhhhHHHH
Confidence                             0112233344444322   22 457889999999998   67788999999999999999999


Q ss_pred             HHHHh-CCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          225 ILIAM-GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       225 ~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      +|++. |++++.+|.+|+||||+|+++|+.+++++|+++++.
T Consensus       257 ~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          257 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             HHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             HHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99985 899999999999999999999999999999998875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-36  Score=292.00  Aligned_cols=254  Identities=22%  Similarity=0.172  Sum_probs=205.2

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHH--------HcCCCCCCccCCCC
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI--------ESGVDINLRNYRGQ   85 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll--------~~g~~v~~~d~~g~   85 (420)
                      ..+.++||.|+..|+ +++++|+..  +++..+ ...|+||||+|+..|+.+++++|+        +.|+++|.+|..|.
T Consensus        92 ~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~  167 (373)
T 2fo1_E           92 PESPIKLHTEAAGSY-AITEPITRE--SVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN  167 (373)
T ss_dssp             --CCCHHHHHHHSSS-CCCSCCSTT--TTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             CCCccHHHHHhcCCc-hHHHHhccc--cccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence            456789999999654 788877653  343333 245799999999999998888776        78999999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhc
Q 014696           86 TALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF  165 (420)
Q Consensus        86 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (420)
                      ||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++.                  .....
T Consensus       168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------~~~~~  228 (373)
T 2fo1_E          168 TPLMLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTK------------------LKGDI  228 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHH------------------HHHTT
T ss_pred             CHHHHHHHcChHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCc------------------cccCh
Confidence            999999999999999999999999999886 99999999999999999999997530                  00112


Q ss_pred             ccccc-hhhHHHHHHhcC---CHHHHHHHHHcCCCcccc-----cccCCCCccHHHHHHHcCCHHHHHHHHHhC-CCccc
Q 014696          166 DERYF-HLEVLLHLTLNG---HVESVQLLLDLGASVSEY-----LSVSGAGSTSLHYAACGGNAQCCQILIAMG-ASLTA  235 (420)
Q Consensus       166 ~~~~~-~~~~~l~aa~~g---~~~~v~~Ll~~ga~~~~~-----~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g-ad~~~  235 (420)
                      +..+. +.++++.|+..+   +.+++++|+++|++++..     ...+..|.||||+|+..|+.++|++|+++| ++++.
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            22233 334455557777   899999999999999842     125678999999999999999999999986 99999


Q ss_pred             cccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCC
Q 014696          236 ENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDS  296 (420)
Q Consensus       236 ~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~  296 (420)
                      +|..|+||||+|+..|+.+++++|+++++..  ...+..+.+|+    .+|...|+.+++.
T Consensus       309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~--~~~d~~g~t~l----~~A~~~g~~~iv~  363 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTAR----QLAQANNHHNIVD  363 (373)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCSSSCCHH----HHHHHTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--cCCCCCCCCHH----HHHHHcCCHHHHH
Confidence            9999999999999999999999999998762  23466677775    4566666655543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.9e-35  Score=265.03  Aligned_cols=212  Identities=28%  Similarity=0.299  Sum_probs=183.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHH
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIE----SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTAL  122 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~----~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL  122 (420)
                      .+..|+||||+|+..|+.+++++|++    .|.+++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.|||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l   83 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAA   83 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHH
Confidence            34567999999999999999999997    7999999999999999999999999999999999999999886 999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCccccc
Q 014696          123 HLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYL  201 (420)
Q Consensus       123 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~  201 (420)
                      |+|+..|+.+++++|++.+...                 ....+..+ .+.+++..|+..|+.+++++|+++|++++   
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~-----------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---  143 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPG-----------------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID---  143 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTT-----------------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc-----------------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---
Confidence            9999999999999999875421                 11112222 23445555699999999999999999999   


Q ss_pred             ccC-CCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHH
Q 014696          202 SVS-GAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLM  280 (420)
Q Consensus       202 ~~~-~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~  280 (420)
                      ..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++...  ...+..+.+|++
T Consensus       144 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~  221 (241)
T 1k1a_A          144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPLM  221 (241)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCTTT
T ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC--CCcCCCCCCHHH
Confidence            555 68999999999999999999999999999999999999999999999999999999998762  335667777775


Q ss_pred             H
Q 014696          281 S  281 (420)
Q Consensus       281 ~  281 (420)
                      .
T Consensus       222 ~  222 (241)
T 1k1a_A          222 V  222 (241)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9.9e-35  Score=256.32  Aligned_cols=190  Identities=25%  Similarity=0.322  Sum_probs=164.1

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCC-CcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNP-RLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      .+.++|+.|+..|+.+.++.|++.++ +++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVD--TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            34578999999999999999998876 554433  356899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHH-HcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchh
Q 014696           94 HGHWEVVLTLI-LYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL  172 (420)
Q Consensus        94 ~g~~~iv~~Ll-~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
                      .|+.+++++|+ ..+++++..+. .|.||||+|+..|+.+++++|++                                 
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~---------------------------------  127 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLE---------------------------------  127 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHH---------------------------------
T ss_pred             cCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHH---------------------------------
Confidence            99999999999 45668887775 88999999998888877777764                                 


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcC-CCcccccccCCCCccHHHHHHHcCC-----HHHHHHHHHhCCCccccccCCCCHHHH
Q 014696          173 EVLLHLTLNGHVESVQLLLDLG-ASVSEYLSVSGAGSTSLHYAACGGN-----AQCCQILIAMGASLTAENANGWTPLMV  246 (420)
Q Consensus       173 ~~~l~aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~g~TpLh~Aa~~g~-----~~iv~~Ll~~gad~~~~d~~G~TpL~~  246 (420)
                                          +| ++++   ..+..|.||||+|+..++     .+++++|+++|++++.+|..|+||||+
T Consensus       128 --------------------~g~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  184 (201)
T 3hra_A          128 --------------------DGREDID---FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY  184 (201)
T ss_dssp             --------------------HCCCCTT---CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             --------------------cCCCCcC---CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence                                44 5666   677889999999999998     999999999999999999999999999


Q ss_pred             HHHcCchhHHHHhhhCC
Q 014696          247 ARSWHRTGLEDILSTQP  263 (420)
Q Consensus       247 A~~~g~~~i~~lL~~~~  263 (420)
                      |++.|+.+++++|++++
T Consensus       185 A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          185 ANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTCHHHHHHHHTCC
T ss_pred             HHHcCCHhHHHHHHhcC
Confidence            99999999999999864

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.3e-35  Score=265.48  Aligned_cols=204  Identities=24%  Similarity=0.281  Sum_probs=128.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----CccccCCCChHHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI-----HRADYLNGGTALHL  124 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-----~~~~~~~g~tpL~~  124 (420)
                      |+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++     +..+. .|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-EGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT-TTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC-CCcCHHHH
Confidence            34555555555555555555554 5555555555555555555555555555555555544     22222 45555555


Q ss_pred             HHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc-ccchhhHHHHHHhcCCHHHHHHHHHcCCCccccccc
Q 014696          125 AALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE-RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV  203 (420)
Q Consensus       125 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~  203 (420)
                      |+..|+.+++++|++++............        ....+. ...+.++++.|+..|+.+++++|+++|++++   .+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~  150 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVF--------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQ  150 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGG--------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT---CC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcce--------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CC
Confidence            55555555555555554433221100000        000001 1122233333455566666777778899998   77


Q ss_pred             CCCCccHHHHHHHcCCHHHH----HHHHHhCCCc------cccccCCCCHHHHHHHcCchhHHHHhhhCCCCc
Q 014696          204 SGAGSTSLHYAACGGNAQCC----QILIAMGASL------TAENANGWTPLMVARSWHRTGLEDILSTQPEGR  266 (420)
Q Consensus       204 ~~~g~TpLh~Aa~~g~~~iv----~~Ll~~gad~------~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~  266 (420)
                      |..|.||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|++.|+.+++++|++++...
T Consensus       151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            88999999999999999988    9999999998      589999999999999999999999999987653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.7e-36  Score=273.53  Aligned_cols=209  Identities=22%  Similarity=0.258  Sum_probs=134.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCC----CCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGV----DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~----~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      |+||||+|+..|+.+++++|++.+.    +++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus         8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~   86 (236)
T 1ikn_D            8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLAC   86 (236)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHHH
T ss_pred             CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHH
Confidence            4555555555555555555554432    4555555555555555555555555555555555555543 5555555555


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc-hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSG  205 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~  205 (420)
                      ..|+.+++++|++.+.....               ....+..+. +.++++.|+..|+.+++++|+++|++++   ..+.
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~---------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~  148 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHL---------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN---AQEP  148 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSS---------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT---CCCT
T ss_pred             HcCCHHHHHHHHhcccchhH---------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCC
Confidence            55555555555544321100               000111111 2223333355556666666677888888   6666


Q ss_pred             -CCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCch
Q 014696          206 -AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALP  278 (420)
Q Consensus       206 -~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~p  278 (420)
                       .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+.+|+.+++++|+++++......++..+.+|
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  222 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES  222 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence             8999999999999999999999999999999999999999999999999999999999987766666555544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.8e-35  Score=250.45  Aligned_cols=154  Identities=36%  Similarity=0.532  Sum_probs=78.2

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHH
Q 014696           54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC  133 (420)
Q Consensus        54 ~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~i  133 (420)
                      +|+.|+..|+.++|++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|++++..+. .|+||||+|+..|+.++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-CCCCHHHHHHHcCCHHH
Confidence            45555555555555555555555555555555555555555555555555555555555443 45555555554444443


Q ss_pred             HHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHH
Q 014696          134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHY  213 (420)
Q Consensus       134 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~  213 (420)
                      +++|+                                                     ++|++++   .+|..|+||||+
T Consensus        86 v~~Ll-----------------------------------------------------~~gadvn---~~d~~G~TpLh~  109 (169)
T 4gpm_A           86 VKLLI-----------------------------------------------------SKGADVN---AKDSDGRTPLHH  109 (169)
T ss_dssp             HHHHH-----------------------------------------------------HTTCCTT---CCCTTSCCHHHH
T ss_pred             HHHHH-----------------------------------------------------HCcCCCC---CCCCCCCCHHHH
Confidence            33333                                                     3344444   344455555555


Q ss_pred             HHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       214 Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      |+..|+.++|++|+++|+|++.+|.+|+|||++|+++|+.+++++|+++++
T Consensus       110 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          110 AAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            555555555555555555555555555555555555555555555555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.4e-35  Score=273.59  Aligned_cols=238  Identities=17%  Similarity=0.117  Sum_probs=192.7

Q ss_pred             HHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHH
Q 014696           23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLT  102 (420)
Q Consensus        23 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~  102 (420)
                      +++..+.+.+..++..+ +++.  .+..|+||||+|+..|+.+++++|+++|++++..+  |+||||+|+..|+.+++++
T Consensus         6 ~i~~~~~~~v~~lL~~~-~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~   80 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-DTFK--ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKI   80 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-TTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHH
T ss_pred             HHHhcCHHHHHHHHHhC-CCCc--cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHH
Confidence            35566777777777655 3443  44567999999999999999999999999999885  9999999999999999999


Q ss_pred             HHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc-h-hhHHHHHHh
Q 014696          103 LILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF-H-LEVLLHLTL  180 (420)
Q Consensus       103 Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~aa~  180 (420)
                      |+++|++++..+. .|.||||+|+..|+.+++++|++++..                     .+..+. + .+++..|+.
T Consensus        81 Ll~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           81 LLFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR---------------------LMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             HHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGG---------------------GGGCSSSGGGSHHHHHHH
T ss_pred             HHHCCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCC---------------------CCccCCCCCCCHHHHHHH
Confidence            9999999999886 999999999999999999999987422                     222222 3 355666699


Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCH-HHHHHHcCchhHHHHh
Q 014696          181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTP-LMVARSWHRTGLEDIL  259 (420)
Q Consensus       181 ~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~Tp-L~~A~~~g~~~i~~lL  259 (420)
                      .|+.+++++|+++|++...   . ..|.||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|
T Consensus       139 ~~~~~~v~~Ll~~g~~~~~---~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~L  214 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPSTFD---L-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL  214 (285)
T ss_dssp             TTCHHHHHHHHTTSCTTCC---C-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCcccc---c-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHH
Confidence            9999999999999988752   1 279999999999999999999999999999999999998 9999999999999999


Q ss_pred             hhCCCCccccCCCCCCCchHHHHHHHHHHcCCC
Q 014696          260 STQPEGRLEVLPSPYLALPLMSIVKIARECGWR  292 (420)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~  292 (420)
                      +++++..... ...........+++...+.|.+
T Consensus       215 l~~gad~~~~-~~~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          215 FKYDINIYSA-NLENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             TTSCBCSTTT-TGGGGTTTCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCC-ChhhhhcCCHHHHHHHHHcCCC
Confidence            9998763222 1111111123456666666543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-35  Score=284.37  Aligned_cols=232  Identities=20%  Similarity=0.155  Sum_probs=185.1

Q ss_pred             ccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHH
Q 014696           43 VRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTAL  122 (420)
Q Consensus        43 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL  122 (420)
                      +....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++.   ..|.|||
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L   88 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPI   88 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHH
Confidence            3334455678999999999999999999999999999999999999999999999999999999997665   3799999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHHHHhcC--CHHHHHHHHHcCCCccc
Q 014696          123 HLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNG--HVESVQLLLDLGASVSE  199 (420)
Q Consensus       123 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g--~~~~v~~Ll~~ga~~~~  199 (420)
                      |+|+..|+.+++++|++.+........................+..+ .+.++++.|+..|  +.+++++|+++|++++ 
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-
Confidence            99999999999999998732111111111111101111111112223 3344555569999  9999999999999999 


Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC-----ccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCC
Q 014696          200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS-----LTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPY  274 (420)
Q Consensus       200 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad-----~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~  274 (420)
                        ..+..|.||||+|+..|+.++|++|+++|++     ++.+|..|+||||+|+..|+.+++++|++++...  ...+..
T Consensus       168 --~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~--~~~d~~  243 (364)
T 3ljn_A          168 --AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV--NMEDNE  243 (364)
T ss_dssp             --CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT--TCCCTT
T ss_pred             --ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCC
Confidence              7788999999999999999999999999999     9999999999999999999999999999998763  345777


Q ss_pred             CCchHHHH
Q 014696          275 LALPLMSI  282 (420)
Q Consensus       275 ~~~pl~~~  282 (420)
                      +.+|++.+
T Consensus       244 g~tpL~~A  251 (364)
T 3ljn_A          244 HTVPLYLS  251 (364)
T ss_dssp             SCCHHHHH
T ss_pred             CCCHHHHH
Confidence            88887543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-34  Score=248.73  Aligned_cols=160  Identities=37%  Similarity=0.566  Sum_probs=143.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      +++|+.|++.|+.++|+.|++.+++++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~--~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDS--DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            5789999999999999999999999887554  56899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      .++|++|+++|++++.++. .|+||||+|+..|+.+++++|+                                      
T Consensus        83 ~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll--------------------------------------  123 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLI--------------------------------------  123 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH--------------------------------------
Confidence            9999999999999999997 9999999999988877766665                                      


Q ss_pred             HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccc
Q 014696          177 HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA  235 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~  235 (420)
                                     ++|++++   .+|..|.||||+|++.|+.+++++|+++||+++.
T Consensus       124 ---------------~~gad~~---~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          124 ---------------SKGADVN---TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             ---------------HTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             ---------------HcCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence                           5678888   7788999999999999999999999999999864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.4e-34  Score=257.14  Aligned_cols=207  Identities=21%  Similarity=0.228  Sum_probs=176.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCc-cccCCCChHHHHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINL-RNYRGQTALMQACQHGHWEVVLTLILYK--ANIHR-ADYLNGGTALHLAA  126 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~-~~~~~g~tpL~~A~  126 (420)
                      |+||||+|+..|+.+++++|++.|.++.. .|..|.||||+|+..|+.+++++|+++|  .+++. .+ ..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC-TTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCC-CCCCCHHHHHH
Confidence            68999999999999999999999888654 8999999999999999999999999999  55555 44 48999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSG  205 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~  205 (420)
                      ..|+.+++++|++++...                   ..+..+ .+.+++..|+..|+.+++++|+++|++++   ..+.
T Consensus        81 ~~~~~~~~~~Ll~~g~~~-------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~  138 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKP-------------------DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR---IKDK  138 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCC-------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---CCCT
T ss_pred             HcCCHHHHHHHHhCCCCc-------------------ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc---ccCC
Confidence            999999999999764211                   111222 23445555699999999999999999999   7788


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCHHHHHHHcCchhHHHHhh-hCCCCccccCCCCCCCchHHHH
Q 014696          206 AGSTSLHYAACGGNAQCCQILIAMG-ASLTAENANGWTPLMVARSWHRTGLEDILS-TQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       206 ~g~TpLh~Aa~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~i~~lL~-~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      .|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ +.+...  ...+..+.+|++.+
T Consensus       139 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~--~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY--DLVDNKGAKAEDVA  215 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS--CCBCTTSCBGGGGC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC--CccCCCCCcHHHHH
Confidence            9999999999999999999999999 999999999999999999999999999999 766652  23566777887543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-34  Score=268.82  Aligned_cols=236  Identities=23%  Similarity=0.242  Sum_probs=192.3

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCcccccC-------CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           21 VSAARDGDLQEAKALLEYNPRLVRYST-------FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        21 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-------~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      +.+++.|..+.++.++.....+.....       ...|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            357788888888888887655432211       1235699999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++....                     ..+..+.
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~---------------------~~~~~g~  140 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVG---------------------AVNSEGD  140 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------CCCTTSC
T ss_pred             cCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCC---------------------CcCCCCC
Confidence            9999999999999999999986 99999999999999999999998754321                     1122233


Q ss_pred             HHHH-HHhcCCHHHHHHHHH-cCCCcccc-----------------------cccCCCCccHHHHHHHcCCHHHHHHHHH
Q 014696          174 VLLH-LTLNGHVESVQLLLD-LGASVSEY-----------------------LSVSGAGSTSLHYAACGGNAQCCQILIA  228 (420)
Q Consensus       174 ~~l~-aa~~g~~~~v~~Ll~-~ga~~~~~-----------------------~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~  228 (420)
                      ++++ |+..++.+++++|+. .|.+++..                       ...+..|.||||+|+..|+.+++++|++
T Consensus       141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  220 (299)
T 1s70_B          141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (299)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            3444 477777888776664 35544321                       1345679999999999999999999999


Q ss_pred             hCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHH
Q 014696          229 MGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLM  280 (420)
Q Consensus       229 ~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~  280 (420)
                      +|++++.+|..|+||||+|+.+|+.+++++|++++...  ...+..+.+|+.
T Consensus       221 ~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~--~~~d~~g~t~l~  270 (299)
T 1s70_B          221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFD  270 (299)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCTTT
T ss_pred             cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC--CCcCCCCCCHHH
Confidence            99999999999999999999999999999999998762  335677777764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1e-34  Score=266.52  Aligned_cols=198  Identities=22%  Similarity=0.216  Sum_probs=164.5

Q ss_pred             CCHHHHHHHHcCCHH----HHHHHHHhCCCccc--ccCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCc------
Q 014696           16 SGERLVSAARDGDLQ----EAKALLEYNPRLVR--YSTFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDINLR------   80 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~----~v~~Ll~~~~~~~~--~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v~~~------   80 (420)
                      +.++||.|++.|+.+    ++++|++.+.+++.  ...+..|+||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            347899999999997    55666678877765  11234568999999999   9999999999988777633      


Q ss_pred             -----cCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccC------------CCChHHHHHHHcCCHHHHHHHHHhcCC
Q 014696           81 -----NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYL------------NGGTALHLAALNGHSRCIRLLLADYIP  143 (420)
Q Consensus        81 -----d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~------------~g~tpL~~A~~~g~~~iv~~Ll~~~~~  143 (420)
                           |..|+||||+|+..|+.+++++|+++|++++..+..            .|.||||+|+..|+.+++++|++++  
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~--  159 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP--  159 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS--
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc--
Confidence                 367999999999999999999999999999888752            1889999998888777666666310  


Q ss_pred             CChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHH--cCCHH
Q 014696          144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAAC--GGNAQ  221 (420)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~--~g~~~  221 (420)
                                                                      .+|++++   .+|..|+||||+|+.  .++.+
T Consensus       160 ------------------------------------------------~~ga~~n---~~d~~g~TpLh~A~~~~~~~~~  188 (256)
T 2etb_A          160 ------------------------------------------------HQPASLE---ATDSLGNTVLHALVMIADNSPE  188 (256)
T ss_dssp             ------------------------------------------------SCCCCTT---CCCTTSCCHHHHHHHHCCSCHH
T ss_pred             ------------------------------------------------ccCCCcC---ccCCCCCCHHHHHHHcccCCch
Confidence                                                            1688888   778899999999999  88988


Q ss_pred             -------HHHHHHHhCCCc-------cccccCCCCHHHHHHHcCchhHHHHhhhCCCCc
Q 014696          222 -------CCQILIAMGASL-------TAENANGWTPLMVARSWHRTGLEDILSTQPEGR  266 (420)
Q Consensus       222 -------iv~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~  266 (420)
                             ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|++++...
T Consensus       189 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          189 NSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence                   999999999999       999999999999999999999999999987653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.8e-33  Score=252.47  Aligned_cols=207  Identities=25%  Similarity=0.223  Sum_probs=182.3

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCC-CCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGV-DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~-~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .++||||.|+..|+.+.+++|++.+. .++..|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC-CCCCHHHHHHHc
Confidence            35799999999999999999998764 4678899999999999999999999999999999999886 999999999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      |+.+++++|++++.....                    ....+.+++..|+..|+.+++++|+++|++++   ..+..|.
T Consensus        84 ~~~~~v~~Ll~~g~~~~~--------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~  140 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNA--------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDA  140 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTC--------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSC
T ss_pred             CHHHHHHHHHHcCCCCCC--------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCC
Confidence            999999999987543210                    11223445566699999999999999999999   7788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          209 TSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++...  ...+..+.+|+..+
T Consensus       141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~~A  212 (231)
T 3aji_A          141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVA  212 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHS
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998763  34577888887654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-34  Score=268.40  Aligned_cols=203  Identities=24%  Similarity=0.294  Sum_probs=166.6

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHh----CCCcccc--cCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCC-------
Q 014696           14 SASGERLVSAARDGDLQEAKALLEY----NPRLVRY--STFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDI-------   77 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~----~~~~~~~--~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v-------   77 (420)
                      ..+.++||.|++.|+.++|+.|++.    +.+++..  ..+..|+||||+|+..   |+.++|++|+++|+++       
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            3556899999999999999998874    4443321  2345679999999987   9999999999987652       


Q ss_pred             CC----ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc-------------CCCChHHHHHHHcCCHHHHHHHHHh
Q 014696           78 NL----RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADY-------------LNGGTALHLAALNGHSRCIRLLLAD  140 (420)
Q Consensus        78 ~~----~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-------------~~g~tpL~~A~~~g~~~iv~~Ll~~  140 (420)
                      +.    .|..|+||||+|+..|+.++|++|+++|++++..+.             ..|.||||+|+..|+.+++++|++.
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            22    567899999999999999999999999999998874             2588999999888877776666631


Q ss_pred             cCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCC-
Q 014696          141 YIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN-  219 (420)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~-  219 (420)
                      +                                                  .+|++++   .+|..|.||||+|+..|+ 
T Consensus       171 ~--------------------------------------------------~~gad~~---~~d~~g~tpLh~A~~~~~~  197 (273)
T 2pnn_A          171 S--------------------------------------------------WQPADIS---ARDSVGNTVLHALVEVADN  197 (273)
T ss_dssp             S--------------------------------------------------SCCCCTT---CCCTTSCCHHHHHHHHCCS
T ss_pred             c--------------------------------------------------cCCCCce---eeCCCCCcHHHHHHHccCc
Confidence            0                                                  0678888   778899999999999998 


Q ss_pred             --------HHHHHHHHHhCCCcc-------ccccCCCCHHHHHHHcCchhHHHHhhhCCCCcccc
Q 014696          220 --------AQCCQILIAMGASLT-------AENANGWTPLMVARSWHRTGLEDILSTQPEGRLEV  269 (420)
Q Consensus       220 --------~~iv~~Ll~~gad~~-------~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~  269 (420)
                              .+++++|+++|++++       .+|..|+||||+|++.|+.+++++|+++++.+...
T Consensus       198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence                    899999999999997       48999999999999999999999999998864433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=266.21  Aligned_cols=207  Identities=22%  Similarity=0.210  Sum_probs=153.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCC--------CCCccCCCCCHHHHHHHcCcH-HHHHHHHHcCCCCCccccCCCCh
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVD--------INLRNYRGQTALMQACQHGHW-EVVLTLILYKANIHRADYLNGGT  120 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~--------v~~~d~~g~TpL~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~~g~t  120 (420)
                      .+.++|+.|+..|+.++|++|++.|++        ++..+..|.|||++|+..+.. .++++|++.|++++..+. .|+|
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-~G~T   88 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ-DGSS   88 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT-TSCC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-CCCC
Confidence            346899999999999999999998875        466778899999999988876 488999999999999986 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc
Q 014696          121 ALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY  200 (420)
Q Consensus       121 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~  200 (420)
                      |||+|+..|+.+++++|++.+.....                    ....+.+++..++..++.+++++|+++|++++  
T Consensus        89 pLh~A~~~g~~~~v~~Ll~~~a~~~~--------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--  146 (269)
T 4b93_B           89 PLHVAALHGRADLIPLLLKHGANAGA--------------------RNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--  146 (269)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTC--------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcCc--------------------cCCCCCCccccccccChHHHHHHHHHCCCCCC--
Confidence            99999999999999999987543211                    11223345555699999999999999999999  


Q ss_pred             cccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHH
Q 014696          201 LSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLM  280 (420)
Q Consensus       201 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~  280 (420)
                       .+|..|.||||+|+..|+.++|++|+++|+|+|.++..|+||||+|+.+|+.+++++|+++++..  ...+..+.+|++
T Consensus       147 -~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~--~~~d~~G~TpL~  223 (269)
T 4b93_B          147 -KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV--QVLNKRQRTAVD  223 (269)
T ss_dssp             -CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS--CCCCTTSCCSGG
T ss_pred             -CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHH
Confidence             77899999999999999999999999999999999999999999999999999999999998752  335778888886


Q ss_pred             HH
Q 014696          281 SI  282 (420)
Q Consensus       281 ~~  282 (420)
                      .+
T Consensus       224 ~A  225 (269)
T 4b93_B          224 CA  225 (269)
T ss_dssp             GS
T ss_pred             HH
Confidence            43

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.4e-34  Score=266.17  Aligned_cols=199  Identities=21%  Similarity=0.239  Sum_probs=169.0

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHH----hCCCcccccC--CCCCCcHHHHHH---HcCcHHHHHHHHHcCCC----------
Q 014696           16 SGERLVSAARDGDLQEAKALLE----YNPRLVRYST--FGVRNSPLHYSA---AQGHHEIVSLLIESGVD----------   76 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~----~~~~~~~~~~--~~~g~t~Lh~Aa---~~g~~~iv~~Ll~~g~~----------   76 (420)
                      +.++||.|++.|+.+.++.|++    .+.+++....  +..|.||||+|+   ..|+.+++++|++.|++          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            3478999999999996555555    8888775542  356799999999   67999999999998744          


Q ss_pred             -CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc-------------CCCChHHHHHHHcCCHHHHHHHHHhcC
Q 014696           77 -INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADY-------------LNGGTALHLAALNGHSRCIRLLLADYI  142 (420)
Q Consensus        77 -v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-------------~~g~tpL~~A~~~g~~~iv~~Ll~~~~  142 (420)
                       ++..|..|+||||+|+..|+.++|++|+++|++++..+.             ..|.||||+|+..|+.+++++|++.+ 
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-  163 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG-  163 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS-
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc-
Confidence             455566899999999999999999999999999999873             37999999999988887776666310 


Q ss_pred             CCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCC---
Q 014696          143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGN---  219 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~---  219 (420)
                                                                       .+|++++   .+|..|.||||+|+..|+   
T Consensus       164 -------------------------------------------------~~ga~~~---~~d~~g~TpLh~A~~~~~~~~  191 (260)
T 3jxi_A          164 -------------------------------------------------HKQADLR---RQDSRGNTVLHALVAIADNTR  191 (260)
T ss_dssp             -------------------------------------------------SCCCCTT---CCCTTSCCHHHHHHHHCCSSH
T ss_pred             -------------------------------------------------ccCCCCc---ccCCCCCcHHHHHHHhccCch
Confidence                                                             0678888   778899999999999888   


Q ss_pred             ------HHHHHHHHHhCCCc-------cccccCCCCHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          220 ------AQCCQILIAMGASL-------TAENANGWTPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       220 ------~~iv~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                            .+++++|+++|+++       +.+|..|+||||+|++.|+.+++++|++++....
T Consensus       192 ~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                  79999999999999       6799999999999999999999999999877643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.7e-32  Score=244.67  Aligned_cols=206  Identities=21%  Similarity=0.168  Sum_probs=178.7

Q ss_pred             cccccccCccc---CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CC
Q 014696            2 KFLSIVGNSFG---CSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV-DI   77 (420)
Q Consensus         2 ~~l~~~g~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~-~v   77 (420)
                      ++|...|.+.-   ...+.++||.|+..|+.+++++|++++++++..+.  .|+||||+|+..|+.+++++|++++. ++
T Consensus         8 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   85 (223)
T 2f8y_A            8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRATDL   85 (223)
T ss_dssp             ETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHBTTSCT
T ss_pred             HHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            34555555543   24567899999999999999999999988776544  55899999999999999999999987 89


Q ss_pred             CCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhcc
Q 014696           78 NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSN  157 (420)
Q Consensus        78 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  157 (420)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++....            
T Consensus        86 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------  152 (223)
T 2f8y_A           86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANKD------------  152 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence            99999999999999999999999999999999999986 99999999999999999999998754321            


Q ss_pred             CCCCchhcccc-cchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcc
Q 014696          158 KTGSILEFDER-YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT  234 (420)
Q Consensus       158 ~~~~~~~~~~~-~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~  234 (420)
                               .. ..+.+++..|+..|+.+++++|+++|++++   ..+..|.||||+|++.|+.+++++|+++|+...
T Consensus       153 ---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          153 ---------MQNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             ---------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             ---------CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc---cccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence                     12 223445556699999999999999999999   778899999999999999999999999998754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=258.86  Aligned_cols=190  Identities=25%  Similarity=0.294  Sum_probs=147.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CCCCccCCCCCHHHHHH-----
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV-DINLRNYRGQTALMQAC-----   92 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~-~v~~~d~~g~TpL~~A~-----   92 (420)
                      +++.|+..|+++.++.+++...+......+..|+||||+|+..|+.++|++|++.|+ +++..|..|.||||+|+     
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~  158 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK  158 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh
Confidence            456677777777777776665443333344456777777777777777777777776 77777777777777777     


Q ss_pred             HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchh
Q 014696           93 QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL  172 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
                      ..++.+++++|++.|.+++..+. .|+||||+|+..|+.++++                                     
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpLh~A~~~g~~~~v~-------------------------------------  200 (276)
T 4hbd_A          159 TQDDIETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVK-------------------------------------  200 (276)
T ss_dssp             SHHHHHHHHHHHHHSCTTCCCTT-TCCCHHHHHHHTTCHHHHH-------------------------------------
T ss_pred             hhhhHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHH-------------------------------------
Confidence            55677777777777766666654 6777777777766665554                                     


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCHHHHHHHcC
Q 014696          173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA-MGASLTAENANGWTPLMVARSWH  251 (420)
Q Consensus       173 ~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g  251 (420)
                                      +|+++|++++   .+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|
T Consensus       201 ----------------~Ll~~gad~n---~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          201 ----------------ALLACEADVN---VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             ----------------HHHHTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ----------------HHHhCCCCCC---CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC
Confidence                            4556788888   778899999999999999999999999 89999999999999999999999


Q ss_pred             chhHHHHhhhCCCC
Q 014696          252 RTGLEDILSTQPEG  265 (420)
Q Consensus       252 ~~~i~~lL~~~~~~  265 (420)
                      +.+++++|+++...
T Consensus       262 ~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          262 QSEIASMLYSRMNI  275 (276)
T ss_dssp             CHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHhccCC
Confidence            99999999987653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.5e-32  Score=243.90  Aligned_cols=217  Identities=18%  Similarity=0.084  Sum_probs=185.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           49 GVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        49 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      ..|.|+||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++......|.||||+|+..
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            35689999999999999999999999999999999999999999999999999999999999987765799999999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      |+.+++++|++.+.....                    ....+.+++..|+..|+.+++++|+++|++++   ..+..|.
T Consensus        87 ~~~~~v~~Ll~~g~~~~~--------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~g~  143 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSL--------------------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGM  143 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTC--------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSC
T ss_pred             CCHHHHHHHHHcCCCCcc--------------------cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc---ccCCCCC
Confidence            999999999987543211                    11223345556699999999999999999999   7788999


Q ss_pred             cHHHHHHHcCC-HHHHHHHHHhCCCcccccc-CCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHH
Q 014696          209 TSLHYAACGGN-AQCCQILIAMGASLTAENA-NGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIA  286 (420)
Q Consensus       209 TpLh~Aa~~g~-~~iv~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a  286 (420)
                      ||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|++++...  ...+..+.+|+.    +|
T Consensus       144 t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~----~A  217 (240)
T 3eu9_A          144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALD----LA  217 (240)
T ss_dssp             CHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT--TCBCTTSCBHHH----HH
T ss_pred             cHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHH----HH
Confidence            99999997666 8999999999999999987 9999999999999999999999997652  234566777764    44


Q ss_pred             HHcCCCCC
Q 014696          287 RECGWRNS  294 (420)
Q Consensus       287 ~~~g~~~~  294 (420)
                      .+.|..++
T Consensus       218 ~~~~~~~~  225 (240)
T 3eu9_A          218 KQRKNVWM  225 (240)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCcHHH
Confidence            44444433

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.1e-31  Score=229.93  Aligned_cols=159  Identities=28%  Similarity=0.370  Sum_probs=143.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC
Confidence            468999999999999999999999999999999999999999999999999999999999998886 8999999999888


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   ..+..|.|
T Consensus        81 ~~~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t  104 (167)
T 3v31_A           81 YTDIVKMLL-----------------------------------------------------DCGVDVN---EYDWNGGT  104 (167)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HHTCCTT---CCCTTSCC
T ss_pred             CHHHHHHHH-----------------------------------------------------HCCCCCC---cCCCCCCC
Confidence            877766666                                                     4567777   66788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++...
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          105 PLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999887543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=4e-32  Score=238.16  Aligned_cols=160  Identities=24%  Similarity=0.331  Sum_probs=148.4

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .+..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~  109 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSI  109 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHH
Confidence            345679999999999999999999999999999999999999999999999999999999999999986 9999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA  206 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~  206 (420)
                      ..|+.+++++|+                                                     ++|++++   ..+..
T Consensus       110 ~~~~~~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~  133 (192)
T 2rfm_A          110 IFGYSEMSYFLL-----------------------------------------------------EHGANVN---DRNLE  133 (192)
T ss_dssp             HHTCHHHHHHHH-----------------------------------------------------HTTCCSS---CCCTT
T ss_pred             HcCCHHHHHHHH-----------------------------------------------------HCCCCCC---CCCCC
Confidence            988887766665                                                     5677787   67889


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|++.+
T Consensus       134 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999998753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3.3e-31  Score=239.18  Aligned_cols=190  Identities=24%  Similarity=0.266  Sum_probs=153.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCC
Q 014696           83 RGQTALMQACQHGHWEVVLTLILY-KANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGS  161 (420)
Q Consensus        83 ~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .|+||||+|+..|+.+++++|++. |++++..+. .|+||||+|+..|+.+++++|++.+....                
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------------   64 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAPELV----------------   64 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGG----------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhc----------------
Confidence            489999999999999999999998 999999986 99999999999999999999998743211                


Q ss_pred             chhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccc----------cCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          162 ILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS----------VSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       162 ~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~----------~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                      ....+..+ .+.++++.|+..|+.+++++|+++|++++....          .+..|.||||+|+..|+.+++++|+++|
T Consensus        65 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  144 (232)
T 2rfa_A           65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG  144 (232)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            00011122 344556666999999999999999999984311          1237999999999999999999999999


Q ss_pred             CCccccccCCCCHHHHHHHcCchhHH----HHhhhCCCCccc----cCCCCCCCchHHHHHHHHHHcCCCC
Q 014696          231 ASLTAENANGWTPLMVARSWHRTGLE----DILSTQPEGRLE----VLPSPYLALPLMSIVKIARECGWRN  293 (420)
Q Consensus       231 ad~~~~d~~G~TpL~~A~~~g~~~i~----~lL~~~~~~~~~----~~~~~~~~~pl~~~l~~a~~~g~~~  293 (420)
                      ++++.+|..|+||||+|+..|+.+++    ++|++.++....    ...+..+.+|++.    |.+.|..+
T Consensus       145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~----A~~~g~~~  211 (232)
T 2rfa_A          145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL----AGVEGNIV  211 (232)
T ss_dssp             CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHH----HHHHTCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHH----HHHcCCHH
Confidence            99999999999999999999999988    999999886421    2456778888654    44444443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=3e-31  Score=227.77  Aligned_cols=157  Identities=31%  Similarity=0.406  Sum_probs=142.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      .+.++|++|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFG   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcC
Confidence            446899999999999999999999999999999999999999999999999999999999998886 8999999999988


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   ..+..|.|
T Consensus        92 ~~~~~~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t  115 (169)
T 2y1l_E           92 HLEIVEVLL-----------------------------------------------------KNGADVN---ANDMEGHT  115 (169)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HTTCCTT---CCCTTSCC
T ss_pred             CHHHHHHHH-----------------------------------------------------HcCCCCC---CCCCCCCC
Confidence            877766666                                                     4567777   66788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++|++.+
T Consensus       116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-32  Score=260.49  Aligned_cols=220  Identities=17%  Similarity=0.154  Sum_probs=163.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc--
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH--   96 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~--   96 (420)
                      .++.|+..+..++++.|++.+.+++.. .+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+  
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            347777788889999999999888772 23356999999999999999999999999999999999999999999999  


Q ss_pred             -HHHHHHHHHcC-CCCCccccCCCChHHHHHHH----cCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccc
Q 014696           97 -WEVVLTLILYK-ANIHRADYLNGGTALHLAAL----NGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF  170 (420)
Q Consensus        97 -~~iv~~Ll~~g-a~~~~~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (420)
                       .++++.|++++ ++++..+. .|+||||+|+.    .|+.+++++|++.+......... ..............+..+.
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN-RPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG-CCEEEC-------------
T ss_pred             cHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc-hHHHhhhhcccCCcccccc
Confidence             78888998886 77888886 99999999999    89999999999763210000000 0000000001222333444


Q ss_pred             hhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHc
Q 014696          171 HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW  250 (420)
Q Consensus       171 ~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~  250 (420)
                      .+.++++.+..     +++|+++  +++   .++..|+||||+|++.|+.++|++|+++|+|++.+|..|+||||+|+++
T Consensus       257 ~g~t~L~~a~~-----~~~Ll~~--~~n---~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          257 ERKDSILENLD-----LKWIIAN--MLN---AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ---CHHHHHCS-----HHHHHHH--TTT---CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             cCCChhHHHHH-----HHHHHHh--CCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            55566666443     8999988  466   6688899999999999999999999999999999999999999999876


Q ss_pred             C
Q 014696          251 H  251 (420)
Q Consensus       251 g  251 (420)
                      |
T Consensus       327 g  327 (327)
T 1sw6_A          327 E  327 (327)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.4e-31  Score=228.84  Aligned_cols=169  Identities=27%  Similarity=0.331  Sum_probs=121.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      +++|+.|+..|+.+.+++|++.++.... ..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVN-KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGG-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCccccc-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            3568888888888888888877765221 223455788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      .+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                      
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll--------------------------------------  122 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALL--------------------------------------  122 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH--------------------------------------
Confidence            8888888888888877775 7888888887776666555554                                      


Q ss_pred             HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCH
Q 014696          177 HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTP  243 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~Tp  243 (420)
                                     ++|++++   ..+..|.||||+|+..|+.+++++|+++|+++..++..|.||
T Consensus       123 ---------------~~ga~~~---~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          123 ---------------ARGADLT---TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             ---------------HTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             ---------------HcCCCcc---ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence                           4566666   566778888888888888888888888888777777777766

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.8e-31  Score=225.11  Aligned_cols=155  Identities=28%  Similarity=0.343  Sum_probs=121.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS  131 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~  131 (420)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence            478888888888888888888888888888888888888877 888888888888888877775 788888888877776


Q ss_pred             HHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHH
Q 014696          132 RCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSL  211 (420)
Q Consensus       132 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpL  211 (420)
                      +++++|+                                                     ++|++++   ..+..|.|||
T Consensus        84 ~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t~L  107 (162)
T 1ihb_A           84 DTLQTLL-----------------------------------------------------EFQADVN---IEDNEGNLPL  107 (162)
T ss_dssp             HHHHHHH-----------------------------------------------------HTTCCTT---CCCTTSCCHH
T ss_pred             HHHHHHH-----------------------------------------------------HcCCCCC---CcCCCCCCHH
Confidence            6655555                                                     4556666   5667788888


Q ss_pred             HHHHHcCCHHHHHHHHHhCCC-ccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          212 HYAACGGNAQCCQILIAMGAS-LTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       212 h~Aa~~g~~~iv~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      |+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++++
T Consensus       108 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            888888888888888888877 47788888888888888888888888887765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5e-31  Score=226.91  Aligned_cols=157  Identities=28%  Similarity=0.398  Sum_probs=145.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVD-INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~-v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      .||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-cCCCHHHHHHHCCC
Confidence            6899999999999999999999887 899999999999999999999999999999999999986 89999999999988


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH
Q 014696          131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS  210 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp  210 (420)
                      .+++++|+                                                     ++|++++   ..+..|.||
T Consensus        82 ~~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t~  105 (172)
T 3v30_A           82 TDIVGLLL-----------------------------------------------------ERDVDIN---IYDWNGGTP  105 (172)
T ss_dssp             HHHHHHHH-----------------------------------------------------TTTCCTT---CCCTTSCCH
T ss_pred             HHHHHHHH-----------------------------------------------------HcCCCCC---CCCCCCCCH
Confidence            87776666                                                     4567777   677899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          211 LHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       211 Lh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++..
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-30  Score=218.77  Aligned_cols=151  Identities=25%  Similarity=0.347  Sum_probs=123.9

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS  131 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~  131 (420)
                      .|+||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcChH
Confidence            478888888888888888888888776 477788888888888888888888888888887775 788888888877776


Q ss_pred             HHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHH
Q 014696          132 RCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSL  211 (420)
Q Consensus       132 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpL  211 (420)
                      +++++|+                                                     ++|++++   ..+..|.|||
T Consensus        81 ~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t~L  104 (153)
T 1awc_B           81 NIVEVLL-----------------------------------------------------KHGADVN---AKDMLKMTAL  104 (153)
T ss_dssp             HHHHHHH-----------------------------------------------------TTTCCTT---CCCTTSCCHH
T ss_pred             HHHHHHH-----------------------------------------------------HcCCCCC---CCCCCCCCHH
Confidence            6655555                                                     4566666   5677888999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhh
Q 014696          212 HYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS  260 (420)
Q Consensus       212 h~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~  260 (420)
                      |+|+..|+.+++++|+++|++++.+|..|+|||++|+.+|+.+++++|.
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            9999999999999999999999888888999999999999998888873

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3e-31  Score=252.46  Aligned_cols=222  Identities=18%  Similarity=0.100  Sum_probs=167.2

Q ss_pred             CCHHHHHHHHHhCCCccccc---------------CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC-ccCCCCCHHHH
Q 014696           27 GDLQEAKALLEYNPRLVRYS---------------TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL-RNYRGQTALMQ   90 (420)
Q Consensus        27 g~~~~v~~Ll~~~~~~~~~~---------------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~-~d~~g~TpL~~   90 (420)
                      |+.++|+.|++++.+.+...               ......+.+|+|+..+..+++++|++.|+++|. +|..|+||||+
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~  137 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW  137 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH
Confidence            99999999999985543210               001112346888999999999999999999999 89999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC---HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc
Q 014696           91 ACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH---SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE  167 (420)
Q Consensus        91 A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (420)
                      |+..|+.++|++|+++|++++..+. .|+||||+|+..|+   .++++.|++.+.                    ...+.
T Consensus       138 Aa~~g~~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~--------------------~~~~~  196 (327)
T 1sw6_A          138 LTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLY--------------------PCLIL  196 (327)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHG--------------------GGGGE
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhh--------------------ccccC
Confidence            9999999999999999999999986 99999999999998   677777776531                    11233


Q ss_pred             ccchhhHHHH-HHh----cCCHHHHHHHHHc--------------------CCCcccccccCCCCccHHHHHHHcCCHHH
Q 014696          168 RYFHLEVLLH-LTL----NGHVESVQLLLDL--------------------GASVSEYLSVSGAGSTSLHYAACGGNAQC  222 (420)
Q Consensus       168 ~~~~~~~~l~-aa~----~g~~~~v~~Ll~~--------------------ga~~~~~~~~~~~g~TpLh~Aa~~g~~~i  222 (420)
                      .+..+.+++| |+.    .|+.+++++|++.                    |++++   ..+..|.||||+|+.      
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~---~~~~~g~t~L~~a~~------  267 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN---DKNGERKDSILENLD------  267 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc---cccccCCChhHHHHH------
Confidence            3334445555 566    8999999999987                    88888   778899999999985      


Q ss_pred             HHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       223 v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      +++|+++  +++.+|..|+||||+|+.+|+.+++++|+++++.  ....+..+.+|++.+
T Consensus       268 ~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad--~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          268 LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD--PFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC--TTCCCTTSCCGGGGT
T ss_pred             HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHH
Confidence            9999999  6888999999999999999999999999999876  334577888888643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.2e-30  Score=219.37  Aligned_cols=157  Identities=29%  Similarity=0.421  Sum_probs=141.0

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      ..++|+.|+..|+.+++++|++.+.+++..+.  .|+||||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNG--FGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT--TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCc--cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            45899999999999999999999988766544  56899999999 9999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL  175 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (420)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++                                    
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~------------------------------------  124 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVK------------------------------------  124 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHH------------------------------------
Confidence            99999999999999999986 99999999999998888777775                                    


Q ss_pred             HHHHhcCCHHHHHHHHHcCCC-cccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC
Q 014696          176 LHLTLNGHVESVQLLLDLGAS-VSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS  232 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~-~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad  232 (420)
                                       +|++ ++   ..+..|.||||+|+..|+.+++++|+++|||
T Consensus       125 -----------------~g~~~~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          125 -----------------HTASNVG---HRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             -----------------HSCCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             -----------------ccCCCCC---CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence                             4444 34   5677899999999999999999999999986

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.5e-29  Score=221.64  Aligned_cols=183  Identities=17%  Similarity=0.210  Sum_probs=160.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCC-CCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGV-DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~-~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .+.||||+|+..|+.+.++.|++.+. +++..|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence            45799999999999999999999866 9999999999999999999999999999999999999886 999999999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      |+.+++++|+++                                                    .+++++   ..+..|.
T Consensus        83 ~~~~~~~~Ll~~----------------------------------------------------~~~~~~---~~~~~g~  107 (201)
T 3hra_A           83 GRTEILAYMLKH----------------------------------------------------ATPDLN---KHNRYGG  107 (201)
T ss_dssp             TCHHHHHHHHHH----------------------------------------------------SCCCTT---CCCTTSC
T ss_pred             CCHHHHHHHHhc----------------------------------------------------cCcccc---cccCCCC
Confidence            999988888853                                                    344555   6677899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCHHHHHHHcCc-----hhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          209 TSLHYAACGGNAQCCQILIAMG-ASLTAENANGWTPLMVARSWHR-----TGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~-----~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      ||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++|++++...  ...+..+.+|+.  
T Consensus       108 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~--~~~~~~g~t~l~--  183 (201)
T 3hra_A          108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ--SIKDNSGRTAMD--  183 (201)
T ss_dssp             CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT--TCCCTTSCCHHH--
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC--CccCCCCCCHHH--
Confidence            9999999999999999999999 9999999999999999999988     89999999998763  335667777765  


Q ss_pred             HHHHHHcCCCCC
Q 014696          283 VKIARECGWRNS  294 (420)
Q Consensus       283 l~~a~~~g~~~~  294 (420)
                        +|...|..++
T Consensus       184 --~A~~~~~~~~  193 (201)
T 3hra_A          184 --YANQKGYTEI  193 (201)
T ss_dssp             --HHHHHTCHHH
T ss_pred             --HHHHcCCHhH
Confidence              4455554443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.3e-30  Score=236.12  Aligned_cols=197  Identities=19%  Similarity=0.148  Sum_probs=155.6

Q ss_pred             CCccCCCCCHHHHHHHcCcHHHHHHHHHcCC----CCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh
Q 014696           78 NLRNYRGQTALMQACQHGHWEVVLTLILYKA----NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR  153 (420)
Q Consensus        78 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  153 (420)
                      +.+|.+|.||||+|+..|+.+++++|++.+.    +++..+. .|.||||+|+..|+.+++++|++++.....       
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   73 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPEL-------   73 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-------
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------
Confidence            3568899999999999999999999998765    6888876 899999999999999999999976533211       


Q ss_pred             hhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCccc---ccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          154 KKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSE---YLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~---~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                   ....+.++++.|+..|+.+++++|+++|++.+.   ....+..|.||||+|+..|+.+++++|+++|
T Consensus        74 -------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  140 (236)
T 1ikn_D           74 -------------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG  140 (236)
T ss_dssp             -------------CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             -------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                         112234455566999999999999999986321   1266778999999999999999999999999


Q ss_pred             CCcccccc-CCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHH--------HHHHHHHHcCCCCCCCC
Q 014696          231 ASLTAENA-NGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLM--------SIVKIARECGWRNSDSL  297 (420)
Q Consensus       231 ad~~~~d~-~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~--------~~l~~a~~~g~~~~~~~  297 (420)
                      ++++.++. .|+||||+|+..|+.+++++|++++...  ...+..+.+|++        .++++..+.|.......
T Consensus       141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~  214 (236)
T 1ikn_D          141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML  214 (236)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS--CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcC
Confidence            99999998 9999999999999999999999997762  234667777763        45677777777655433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.7e-29  Score=216.81  Aligned_cols=158  Identities=34%  Similarity=0.493  Sum_probs=142.8

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++|+.|++.|+.++|++|++++.+++..+.  .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDA--SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            3556799999999999999999999988876544  56899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                   
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll-----------------------------------  133 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLL-----------------------------------  133 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH-----------------------------------
T ss_pred             cCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH-----------------------------------
Confidence            9999999999999999999986 8999999999988887766666                                   


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                        ++|++++   ..+..|.||||+|+..|+.+++++|+++|
T Consensus       134 ------------------~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          134 ------------------KNGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ------------------HTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ------------------HcCCCCC---CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                              5677777   67889999999999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=7.8e-30  Score=218.30  Aligned_cols=161  Identities=25%  Similarity=0.381  Sum_probs=145.8

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++||.|+..|+.+++++|++.+.+++..+.  .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE--EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            456899999999999999999999988766544  568999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV  174 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                    
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll------------------------------------  122 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLL------------------------------------  122 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH------------------------------------
T ss_pred             CCHHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHH------------------------------------
Confidence            999999999999999999986 9999999999988877766665                                    


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcc
Q 014696          175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT  234 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~  234 (420)
                                       ++|++++   ..+..|.||||+|+..|+.+++++|+++++++.
T Consensus       123 -----------------~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          123 -----------------ESGADPT---IETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             -----------------HTTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             -----------------HcCCCCC---CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                             5677777   678899999999999999999999999876653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2e-30  Score=221.56  Aligned_cols=156  Identities=30%  Similarity=0.338  Sum_probs=99.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIE-SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~-~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      |.|+||.|+..|+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   86 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTT
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHcC
Confidence            3566666666666666666665 3455555666666666666666666666666666666666664 6666666666665


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   ..+..|.|
T Consensus        87 ~~~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t  110 (165)
T 3twr_A           87 HYEVAELLV-----------------------------------------------------KHGAVVN---VADLWKFT  110 (165)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HTTCCTT---CCCTTCCC
T ss_pred             cHHHHHHHH-----------------------------------------------------hCCCCCC---CcCCCCCC
Confidence            555544444                                                     3445555   45556677


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|++ ++.+++++|+++++
T Consensus       111 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            7777777777777777777777777777777777777655 66677777766553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3e-30  Score=239.00  Aligned_cols=185  Identities=19%  Similarity=0.214  Sum_probs=145.7

Q ss_pred             CCCCHHHHHHHHc---CCHHHHHHHHHhCCCc-------c--cccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc
Q 014696           14 SASGERLVSAARD---GDLQEAKALLEYNPRL-------V--RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN   81 (420)
Q Consensus        14 ~~~~~~L~~Aa~~---g~~~~v~~Ll~~~~~~-------~--~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d   81 (420)
                      ..+.++||.|+..   |+.++|++|++.+++.       +  ....+..|.||||+|+..|+.++|++|+++|++++.++
T Consensus        52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~  131 (273)
T 2pnn_A           52 ETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA  131 (273)
T ss_dssp             TTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred             cCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccc
Confidence            4677899999987   9999999999987542       1  12234567999999999999999999999999999998


Q ss_pred             C--------------CCCCHHHHHHHcCcHHHHHHHHH---cCCCCCccccCCCChHHHHHHHcCC--HHHHHHHHHhcC
Q 014696           82 Y--------------RGQTALMQACQHGHWEVVLTLIL---YKANIHRADYLNGGTALHLAALNGH--SRCIRLLLADYI  142 (420)
Q Consensus        82 ~--------------~g~TpL~~A~~~g~~~iv~~Ll~---~ga~~~~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~  142 (420)
                      .              .|+||||+|+..|+.+++++|++   +|++++..+. .|+||||+|+..|+  .+..+++.    
T Consensus       132 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~----  206 (273)
T 2pnn_A          132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVT----  206 (273)
T ss_dssp             CSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHH----
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHH----
Confidence            7              79999999999999999999999   9999999997 99999999999877  33333332    


Q ss_pred             CCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc----cccCCCCccHHHHHHHcC
Q 014696          143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY----LSVSGAGSTSLHYAACGG  218 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~----~~~~~~g~TpLh~Aa~~g  218 (420)
                                                                +++++|+++|++++..    ...+..|.||||+|++.|
T Consensus       207 ------------------------------------------~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          207 ------------------------------------------SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             ------------------------------------------HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC
Confidence                                                      4577777888777621    146889999999999999


Q ss_pred             CHHHHHHHHHhCC-CccccccCCCCHHH
Q 014696          219 NAQCCQILIAMGA-SLTAENANGWTPLM  245 (420)
Q Consensus       219 ~~~iv~~Ll~~ga-d~~~~d~~G~TpL~  245 (420)
                      +.+++++|+++|+ |+......+++|-+
T Consensus       245 ~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          245 KIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CHHHHHHHHHHHTC--------------
T ss_pred             hHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999999999 88887777777643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.4e-30  Score=237.23  Aligned_cols=188  Identities=21%  Similarity=0.212  Sum_probs=153.2

Q ss_pred             CCCcHHHHHHHcCcHH----HHHHHHHcCCCCCC----ccCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCccc----
Q 014696           50 VRNSPLHYSAAQGHHE----IVSLLIESGVDINL----RNYRGQTALMQACQH---GHWEVVLTLILYKANIHRAD----  114 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~----iv~~Ll~~g~~v~~----~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga~~~~~~----  114 (420)
                      +|+||||+|+..|+.+    ++++|+++|++++.    +|..|+||||+|+..   |+.++|++|+++|++++..+    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4689999999999997    66778889999998    899999999999999   99999999999998876433    


Q ss_pred             ------cCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHH
Q 014696          115 ------YLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQ  188 (420)
Q Consensus       115 ------~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~  188 (420)
                            +..|.||||+|+..|+.+++++|++++                                               
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------------------------------------------  113 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-----------------------------------------------  113 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-----------------------------------------------
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcC-----------------------------------------------
Confidence                  137999999999999988888887653                                               


Q ss_pred             HHHHcCCCccccc----------ccCCCCccHHHHHHHcCCHHHHHHHHH---hCCCccccccCCCCHHHHHHH--cCch
Q 014696          189 LLLDLGASVSEYL----------SVSGAGSTSLHYAACGGNAQCCQILIA---MGASLTAENANGWTPLMVARS--WHRT  253 (420)
Q Consensus       189 ~Ll~~ga~~~~~~----------~~~~~g~TpLh~Aa~~g~~~iv~~Ll~---~gad~~~~d~~G~TpL~~A~~--~g~~  253 (420)
                            ++++...          ..+..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.
T Consensus       114 ------a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          114 ------ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             ------CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH
T ss_pred             ------CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc
Confidence                  3433110          122349999999999999999999999   999999999999999999999  7888


Q ss_pred             h-------HHHHhhhCCCCccc-----cCCCCCCCchHHHHHHHHHHcCCCCC
Q 014696          254 G-------LEDILSTQPEGRLE-----VLPSPYLALPLMSIVKIARECGWRNS  294 (420)
Q Consensus       254 ~-------i~~lL~~~~~~~~~-----~~~~~~~~~pl~~~l~~a~~~g~~~~  294 (420)
                      +       ++++|+++++....     ...+..+.+|++    +|.+.|..++
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~----~A~~~g~~~~  236 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK----LAAKEGKIEI  236 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH----HHHHTTCHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH----HHHHhCCHHH
Confidence            8       99999998766321     345677888765    4555554433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1e-29  Score=215.01  Aligned_cols=152  Identities=29%  Similarity=0.356  Sum_probs=116.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           52 NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      .||||+|+..|+.+++++|++. +.+++..|..|+||||+ +..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCc
Confidence            4778888888888888888777 44777777778888888 777888888888888888777775 77888888877776


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH
Q 014696          131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS  210 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp  210 (420)
                      .+++++|+                                                     ++|++++   ..+..|.||
T Consensus        81 ~~~v~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t~  104 (156)
T 1bd8_A           81 LDTLKVLV-----------------------------------------------------EHGADVN---VPDGTGALP  104 (156)
T ss_dssp             HHHHHHHH-----------------------------------------------------HTTCCSC---CCCTTSCCH
T ss_pred             HHHHHHHH-----------------------------------------------------HcCCCCC---CcCCCCCcH
Confidence            66555554                                                     4456666   556678888


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          211 LHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       211 Lh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      ||+|+..|+.+++++|+++ ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888888888887 88888888888888888888888888887764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3.2e-29  Score=211.37  Aligned_cols=150  Identities=31%  Similarity=0.426  Sum_probs=137.7

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      +++|+.|++.|+.+++++|++.+++.+   .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            579999999999999999999998765   34567999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      .+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                      
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll--------------------------------------  120 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLI--------------------------------------  120 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH--------------------------------------
Confidence            9999999999999999986 9999999999988887766665                                      


Q ss_pred             HHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHH
Q 014696          177 HLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL  226 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L  226 (420)
                                     ++|++++   .++..|.||||+|+..|+.+++++|
T Consensus       121 ---------------~~ga~~~---~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          121 ---------------KYGADVH---TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             ---------------HTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ---------------HcCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence                           5677777   6788999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.1e-29  Score=220.03  Aligned_cols=113  Identities=29%  Similarity=0.503  Sum_probs=54.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC-cccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPR-LVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      ++|+.|+..|+.++|++|++.++. ++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCTTSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCcccccc--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            345555555555555555544221 221  22233455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC  133 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~i  133 (420)
                      .+++++|+++|++++..+. .|.||||+|+..|+.++
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~  120 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQV  120 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHH
Confidence            5555555555555544443 45555555544444433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.2e-29  Score=219.94  Aligned_cols=160  Identities=28%  Similarity=0.350  Sum_probs=147.3

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      +.++||.|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC
Confidence            46899999999999999999998 778999999999999999999999999999999999999986 9999999999988


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   ..+..|.|
T Consensus        84 ~~~~v~~Ll-----------------------------------------------------~~g~~~~---~~d~~g~t  107 (179)
T 3f6q_A           84 HRDIVQKLL-----------------------------------------------------QYKADIN---AVNEHGNV  107 (179)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HTTCCTT---CCCTTSCC
T ss_pred             CHHHHHHHH-----------------------------------------------------HcCCCCC---ccCCCCCC
Confidence            887766666                                                     5677777   67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                      |||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|++.++...
T Consensus       108 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999999999999999999999999999999999988744

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=7.7e-30  Score=217.87  Aligned_cols=161  Identities=29%  Similarity=0.422  Sum_probs=140.3

Q ss_pred             cCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHH
Q 014696           12 GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA   91 (420)
Q Consensus        12 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A   91 (420)
                      +.+.+.++|+.|++.|+.+.+++|++.++ .+....+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            44556689999999999999999998654 33344555678999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccch
Q 014696           92 CQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH  171 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (420)
                      +..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                 
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll---------------------------------  128 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLL---------------------------------  128 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHH---------------------------------
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHH---------------------------------
Confidence            999999999999999999999986 9999999999988887766665                                 


Q ss_pred             hhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCC
Q 014696          172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA  231 (420)
Q Consensus       172 ~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~ga  231 (420)
                                          ++|++++   .++..|.||||+|+. |+.+++++|+++||
T Consensus       129 --------------------~~ga~~~---~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          129 --------------------QHGADPT---KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             --------------------HTTCCTT---CCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             --------------------HcCCCCc---ccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                                5677887   778899999999776 99999999999886

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3.8e-29  Score=219.16  Aligned_cols=159  Identities=24%  Similarity=0.288  Sum_probs=144.8

Q ss_pred             CCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Q 014696           13 CSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQAC   92 (420)
Q Consensus        13 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~   92 (420)
                      ...+.++||.|+..|+.+++++|++.+++++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI--EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc--cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            44667899999999999999999999988776544  4689999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchh
Q 014696           93 QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL  172 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (420)
                      ..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                                  
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll----------------------------------  154 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLL----------------------------------  154 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHH----------------------------------
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH----------------------------------
Confidence            99999999999999999999986 9999999999988887766665                                  


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       173 ~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                         ++|++++   ..+..|.||||+|+..|+.+++++|+++|
T Consensus       155 -------------------~~ga~~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          155 -------------------ELGADIS---ARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             -------------------HTTCCTT---CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------------------HCCCCCC---CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence                               5677887   67889999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.1e-32  Score=245.92  Aligned_cols=182  Identities=18%  Similarity=0.159  Sum_probs=116.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ++|+.|+..|+.++|++|++.+++++..+  ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDPSQPN--EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            45555555555555555555555544332  2335555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHH--HHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLA--ALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL  175 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (420)
                      +++++|+++|++++..++..|.||||+|  +..                                               
T Consensus       101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~-----------------------------------------------  133 (229)
T 2vge_A          101 VICMALVQHGAAIFATTLSDGATAFEKCDPYRE-----------------------------------------------  133 (229)
T ss_dssp             HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST-----------------------------------------------
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc-----------------------------------------------
Confidence            5555555555555555433555555555  444                                               


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC--ccccccCCCCHHHHHHHcCch
Q 014696          176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS--LTAENANGWTPLMVARSWHRT  253 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad--~~~~d~~G~TpL~~A~~~g~~  253 (420)
                            |+.+++++|+++|++++   ..+..|.||+|.++..+.   +++|++.|++  ++.+|..|+||||+|+.+|+.
T Consensus       134 ------~~~~~v~~Ll~~ga~~~---~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          134 ------GYADCATYLADVEQSMG---LMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             ------THHHHHHHHHHHHHHTT---TSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             ------ChHHHHHHHHHcCCCcc---cccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCc
Confidence                  44555555556677777   556778899986655443   3678889998  678899999999999999999


Q ss_pred             hHHHHhh
Q 014696          254 GLEDILS  260 (420)
Q Consensus       254 ~i~~lL~  260 (420)
                      ++++-++
T Consensus       202 ~~v~~~~  208 (229)
T 2vge_A          202 GYVPRNY  208 (229)
T ss_dssp             EEEEGGG
T ss_pred             ceeehhh
Confidence            9987544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=9.7e-29  Score=208.90  Aligned_cols=154  Identities=25%  Similarity=0.353  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      ++++|+.|+..|+.+.+++|++. ...+....+..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            35899999999999999999998 433333344567999999 9999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL  175 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (420)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++                                    
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~------------------------------------  122 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAA------------------------------------  122 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHT------------------------------------
T ss_pred             cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHh------------------------------------
Confidence            99999999999999999987 99999999999999888887773                                    


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHh
Q 014696          176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM  229 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~  229 (420)
                                       + ++++   ..+..|.||||+|+..|+.+++++|+++
T Consensus       123 -----------------~-~~~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          123 -----------------E-SDLH---RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -----------------T-SCTT---CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -----------------c-cCCC---CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence                             3 4555   6678899999999999999999999975

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=4.4e-30  Score=233.36  Aligned_cols=187  Identities=22%  Similarity=0.211  Sum_probs=131.6

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++|+.|++.|+.+.++.|++++.+++..   ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4668999999999999999999999888753   3458999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV  174 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (420)
                      |+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+                                    
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll------------------------------------  123 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLV------------------------------------  123 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHH------------------------------------
T ss_pred             CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHH------------------------------------
Confidence            999999999999999999987 9999999999888877666665                                    


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc-cHHHHH--HHcCCHHHHHHHHHhCCCcccc---------ccCCCC
Q 014696          175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS-TSLHYA--ACGGNAQCCQILIAMGASLTAE---------NANGWT  242 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~-TpLh~A--a~~g~~~iv~~Ll~~gad~~~~---------d~~G~T  242 (420)
                                       ++|++++   ..+..|. ||||+|  +..|+.+++++|+++|++++..         +..+.+
T Consensus       124 -----------------~~ga~~~---~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~  183 (239)
T 1ycs_B          124 -----------------ESGAAVF---AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQN  183 (239)
T ss_dssp             -----------------HTTCCTT---CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSS
T ss_pred             -----------------HcCCCcc---eecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCC
Confidence                             5677887   5565565 999999  7889999999999999988765         566888


Q ss_pred             HHHHHHHcCchhHHHHhhhCC
Q 014696          243 PLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       243 pL~~A~~~g~~~i~~lL~~~~  263 (420)
                      ++++|.+.|.  ++++|.+..
T Consensus       184 ~~eLa~~~G~--~i~vl~~~~  202 (239)
T 1ycs_B          184 DDELPMKEGD--CMTIIHRED  202 (239)
T ss_dssp             TTBCCBCSSC--EEEECCCCT
T ss_pred             CCcccccCCC--EEEEEEecC
Confidence            8888877765  445554443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.4e-29  Score=230.02  Aligned_cols=173  Identities=21%  Similarity=0.218  Sum_probs=146.9

Q ss_pred             CCCHHHHHHH---HcCCHHHHHHHHHhCCCc---------ccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc-
Q 014696           15 ASGERLVSAA---RDGDLQEAKALLEYNPRL---------VRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN-   81 (420)
Q Consensus        15 ~~~~~L~~Aa---~~g~~~~v~~Ll~~~~~~---------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-   81 (420)
                      .+.++||.|+   +.|+.++|++|++.+++.         .....+..|+||||+|+..|+.++|++|+++|++++..+ 
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  124 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR  124 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCE
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccc
Confidence            4778999999   779999999999987542         223333467999999999999999999999999999998 


Q ss_pred             -------------CCCCCHHHHHHHcCcHHHHHHHHH---cCCCCCccccCCCChHHHHHHHcCC--HHHHHHHHHhcCC
Q 014696           82 -------------YRGQTALMQACQHGHWEVVLTLIL---YKANIHRADYLNGGTALHLAALNGH--SRCIRLLLADYIP  143 (420)
Q Consensus        82 -------------~~g~TpL~~A~~~g~~~iv~~Ll~---~ga~~~~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~~  143 (420)
                                   ..|+||||+|+..|+.++|++|++   +|++++..+. .|+||||+|+..|+  .+.++++.     
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~-----  198 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVT-----  198 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHH-----
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHH-----
Confidence                         689999999999999999999999   9999999997 99999999998765  44444443     


Q ss_pred             CChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc----cccCCCCccHHHHHHHcCC
Q 014696          144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY----LSVSGAGSTSLHYAACGGN  219 (420)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~----~~~~~~g~TpLh~Aa~~g~  219 (420)
                                                               +++++|+++|++++..    ...+..|.||||+|++.|+
T Consensus       199 -----------------------------------------~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          199 -----------------------------------------KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             -----------------------------------------HHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence                                                     4677888888887310    1678899999999999999


Q ss_pred             HHHHHHHHHhCCCcc
Q 014696          220 AQCCQILIAMGASLT  234 (420)
Q Consensus       220 ~~iv~~Ll~~gad~~  234 (420)
                      .+++++|+++|++..
T Consensus       238 ~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          238 IGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcc
Confidence            999999999987754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-29  Score=228.86  Aligned_cols=189  Identities=20%  Similarity=0.140  Sum_probs=150.4

Q ss_pred             HHHHHHhCCCccccc-CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Q 014696           32 AKALLEYNPRLVRYS-TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI  110 (420)
Q Consensus        32 v~~Ll~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~  110 (420)
                      |+.|++++.+.+... ....|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467888887766433 3345678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHH
Q 014696          111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLL  190 (420)
Q Consensus       111 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~L  190 (420)
                      +..+. .|+||||+|+..|+.+++++|+                                                    
T Consensus        81 n~~d~-~g~tpLh~A~~~g~~~~v~~Ll----------------------------------------------------  107 (229)
T 2vge_A           81 NSPDS-HGWTPLHCAASCNDTVICMALV----------------------------------------------------  107 (229)
T ss_dssp             TCCCT-TCCCHHHHHHHTTCHHHHHHHH----------------------------------------------------
T ss_pred             CCCCC-CCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------
Confidence            99987 9999999999988887766666                                                    


Q ss_pred             HHcCCCcccccccC-CCCccHHHHH--HHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          191 LDLGASVSEYLSVS-GAGSTSLHYA--ACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       191 l~~ga~~~~~~~~~-~~g~TpLh~A--a~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                       ++|++++   ..+ ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||++.++..+.   .++|++.++...
T Consensus       108 -~~ga~~~---~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~  180 (229)
T 2vge_A          108 -QHGAAIF---ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFREGESVT  180 (229)
T ss_dssp             -TTTCCTT---CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEE
T ss_pred             -HcCCCcc---cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCcccccccc
Confidence             5677777   444 5899999999  99999999999999999999999999999986554433   356777766533


Q ss_pred             ccCCCCCCCchHH
Q 014696          268 EVLPSPYLALPLM  280 (420)
Q Consensus       268 ~~~~~~~~~~pl~  280 (420)
                      ....+..+.+|++
T Consensus       181 ~~~~d~~G~TpL~  193 (229)
T 2vge_A          181 VLRRDGPEETDWW  193 (229)
T ss_dssp             EEESSCTTCSSEE
T ss_pred             ccccCCCcccHHH
Confidence            3334666666654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.7e-30  Score=250.77  Aligned_cols=237  Identities=16%  Similarity=0.070  Sum_probs=161.7

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCccc-ccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC---CCccCCCCCHHHHH
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVR-YSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI---NLRNYRGQTALMQA   91 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v---~~~d~~g~TpL~~A   91 (420)
                      +.++||.|++.|+.++|++|++.++.... ...+..|.||||+|+.+|+.++|++|+++|+++   +..+.+ .||||+|
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            45899999999999999999998863211 112224578999999999999999999999762   333333 8999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCc--cccCCCChHHHHHH-HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc
Q 014696           92 CQHGHWEVVLTLILYKANIHR--ADYLNGGTALHLAA-LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER  168 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~ga~~~~--~~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (420)
                      +.+|+.++|++|+++|++++.  .+. .|.||||+|+ .+|+.++|++|++++.                          
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------------------------  223 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV--------------------------  223 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH--------------------------
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC--------------------------
Confidence            999999999999999999876  665 7999999999 9999999999996420                          


Q ss_pred             cchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHH---------------------------
Q 014696          169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQ---------------------------  221 (420)
Q Consensus       169 ~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~---------------------------  221 (420)
                       .+.+++..|+..|+.+++++|+++|++++..       .+++++|+..|+.+                           
T Consensus       224 -~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~-------~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~  295 (376)
T 2aja_A          224 -MLAYAEIHEFEYGEKYVNPFIARHVNRLKEM-------HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD  295 (376)
T ss_dssp             -HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH-------HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred             -ccchHHHHHHHCCCHHHHHHHHhcCcccccc-------cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHH
Confidence             1334555569999999999999999888732       23555555555443                           


Q ss_pred             HHHHHHHhCC-----CccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCC
Q 014696          222 CCQILIAMGA-----SLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDS  296 (420)
Q Consensus       222 iv~~Ll~~ga-----d~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~  296 (420)
                      .+++|++.++     +.......+.|||++|+..|+.+++++|++.+......     +.    +...++...|+.++..
T Consensus       296 ~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~~~~-----~~----~~~~~~~~~~~~~~~~  366 (376)
T 2aja_A          296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT-----KA----NNYYINETGGRLDLRA  366 (376)
T ss_dssp             HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHHHSC-----C---------------------
T ss_pred             HHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHHHHH-----HH----hccccccccccccHHH
Confidence            4455554211     01112234668999999999999999999876442222     22    2234566666665554


Q ss_pred             C
Q 014696          297 L  297 (420)
Q Consensus       297 ~  297 (420)
                      +
T Consensus       367 ~  367 (376)
T 2aja_A          367 V  367 (376)
T ss_dssp             -
T ss_pred             H
Confidence            3

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.1e-28  Score=224.07  Aligned_cols=158  Identities=23%  Similarity=0.274  Sum_probs=115.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      .|.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAG   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcC
Confidence            4689999999999999999999999999864 7789999999999999999999999999999986 9999999999998


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   .+|..|.|
T Consensus        82 ~~~~v~~Ll-----------------------------------------------------~~ga~~~---~~d~~g~t  105 (239)
T 1ycs_B           82 HTEIVKFLV-----------------------------------------------------QFGVNVN---AADSDGWT  105 (239)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HHTCCTT---CCCTTCCC
T ss_pred             CHHHHHHHH-----------------------------------------------------HcCCCCC---ccCCCCCC
Confidence            887766666                                                     5678888   77889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCC-CHHHHH--HHcCchhHHHHhhhCCCC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGW-TPLMVA--RSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~-TpL~~A--~~~g~~~i~~lL~~~~~~  265 (420)
                      |||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|++.++.
T Consensus       106 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence            99999999999999999999999999998887 999999  788999999999987665

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=218.29  Aligned_cols=161  Identities=28%  Similarity=0.311  Sum_probs=144.6

Q ss_pred             cCCCCCHHHHHHHHcCCHHHHHHHHHhCC-CcccccCCCCCCcHHHHHH-----HcCcHHHHHHHHHcCCCCCCccCCCC
Q 014696           12 GCSASGERLVSAARDGDLQEAKALLEYNP-RLVRYSTFGVRNSPLHYSA-----AQGHHEIVSLLIESGVDINLRNYRGQ   85 (420)
Q Consensus        12 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~t~Lh~Aa-----~~g~~~iv~~Ll~~g~~v~~~d~~g~   85 (420)
                      ....+.++||.|+..|+.++|++|++.++ +++..+  ..|.||||+|+     ..++.+++++|++.|.+++..+..|+
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~--~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN--RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ  184 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC--TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC--CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCC
Confidence            34567799999999999999999999997 665544  45689999999     67999999999999999999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhc
Q 014696           86 TALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF  165 (420)
Q Consensus        86 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (420)
                      ||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.                         
T Consensus       185 tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~-------------------------  238 (276)
T 4hbd_A          185 TALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAV-------------------------  238 (276)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTS-------------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhc-------------------------
Confidence            999999999999999999999999999997 999999999999888877777631                         


Q ss_pred             ccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          166 DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       166 ~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                                 .|++++   ..|..|.||||+|+..|+.+++++|++++
T Consensus       239 ---------------------------~gad~~---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          239 ---------------------------PSCDIS---LTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             ---------------------------TTCCTT---CCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             ---------------------------CCCCCc---CcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                                       577888   77889999999999999999999999974

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=5.4e-28  Score=204.63  Aligned_cols=142  Identities=23%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCCh-HHHHHH
Q 014696           48 FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGT-ALHLAA  126 (420)
Q Consensus        48 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~t-pL~~A~  126 (420)
                      ...|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++..+. .|.| |||+|+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-~g~ttpL~~A~   86 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-ATLTRPVHDAA   86 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-TTCCCHHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHH
Confidence            345689999999999999999999999999999999999999995 9999999999999999999986 8998 999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA  206 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~  206 (420)
                      ..|+.+++++|+                                                     ++|++++   .++..
T Consensus        87 ~~~~~~~v~~Ll-----------------------------------------------------~~ga~~~---~~d~~  110 (156)
T 1bi7_B           87 REGFLDTLVVLH-----------------------------------------------------RAGARLD---VRDAW  110 (156)
T ss_dssp             HHTCHHHHHHHH-----------------------------------------------------HHTCCSS---CCCTT
T ss_pred             HCCCHHHHHHHH-----------------------------------------------------HcCCCCc---ccCCC
Confidence            988887766665                                                     5678888   67889


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus       111 g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          111 GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=2.8e-28  Score=212.60  Aligned_cols=157  Identities=15%  Similarity=0.131  Sum_probs=84.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCccccCCCChHHHHHHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRN-YRGQTALMQACQHGHW----EVVLTLILYKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A~~~g~~----~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      ++|+.|+..|+.+.++.+++.+  ++..+ ..|+||||+|+.+|+.    +++++|+++|++++..+. .|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT-TCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHH
Confidence            4555555555555555555543  23333 4455555555555543    355555555555555553 55555555555


Q ss_pred             cCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCC
Q 014696          128 NGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG  207 (420)
Q Consensus       128 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g  207 (420)
                      .|+.++.+                                               ..+++++|+++|++++   .+|..|
T Consensus        85 ~~~~~~~~-----------------------------------------------~~~iv~~Ll~~Gadin---~~d~~g  114 (186)
T 3t8k_A           85 GGGNDITG-----------------------------------------------TTELCKIFLEKGADIT---ALYKPY  114 (186)
T ss_dssp             HCTTCHHH-----------------------------------------------HHHHHHHHHHTTCCSS---SCBGGG
T ss_pred             cCCcchhh-----------------------------------------------HHHHHHHHHHCCCCCC---ccCCCc
Confidence            44332211                                               1234555555566655   445555


Q ss_pred             c-cHHHHHHHcC-----CHHHHHHHHH-hCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          208 S-TSLHYAACGG-----NAQCCQILIA-MGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       208 ~-TpLh~Aa~~g-----~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      . ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|++.|+.+++++|.+.
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            5 6666665532     2346666666 6666666666666666666666666666666543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.1e-27  Score=208.93  Aligned_cols=165  Identities=15%  Similarity=0.089  Sum_probs=141.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~----~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ++|+.|++.|+++.++.++..+....  . +..|+||||+|+..|+.    +++++|+++|+++|.+|..|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~--~-~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDK--E-SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCH--H-HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccc--c-ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            46999999999999999999875432  1 13468999999999975    59999999999999999999999999999


Q ss_pred             cCc------HHHHHHHHHcCCCCCccccCCCC-hHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcc
Q 014696           94 HGH------WEVVLTLILYKANIHRADYLNGG-TALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD  166 (420)
Q Consensus        94 ~g~------~~iv~~Ll~~ga~~~~~~~~~g~-tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      .|+      .+++++|+++|++++.+|. .|. ||||+|+..+..+.                                 
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~---------------------------------  130 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDEN---------------------------------  130 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHH---------------------------------
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChh---------------------------------
Confidence            987      6899999999999999997 898 99999998554220                                 


Q ss_pred             cccchhhHHHHHHhcCCHHHHHHHHH-cCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 014696          167 ERYFHLEVLLHLTLNGHVESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN  237 (420)
Q Consensus       167 ~~~~~~~~~l~aa~~g~~~~v~~Ll~-~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d  237 (420)
                                     ++.+++++|++ +|++++   .+|..|.||||+|++.|+.++|++|.++..+.+.++
T Consensus       131 ---------------~~~~iv~~Ll~~~gad~~---~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          131 ---------------EMIPLYKLIFSQSGLQLL---IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             ---------------HHHHHHHHHHTSTTCCTT---CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             ---------------hHHHHHHHHHHhcCCCCc---ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence                           23457888889 999999   789999999999999999999999998865555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.4e-27  Score=194.95  Aligned_cols=87  Identities=29%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCC-CChHHHHHHHc
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN-GGTALHLAALN  128 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~-g~tpL~~A~~~  128 (420)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++..+. . |.||||+|+..
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~   88 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-ATLTRPVHDAARE   88 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-TTTBCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCCHHHHHHHc
Confidence            34566666666666666666666666666666666666666666 666666666666666666654 4 66666666655


Q ss_pred             CCHHHHHHHH
Q 014696          129 GHSRCIRLLL  138 (420)
Q Consensus       129 g~~~iv~~Ll  138 (420)
                      |+.+++++|+
T Consensus        89 ~~~~~v~~Ll   98 (136)
T 1d9s_A           89 GFLDTLVVLH   98 (136)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            5554444443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=8e-27  Score=192.68  Aligned_cols=133  Identities=22%  Similarity=0.238  Sum_probs=116.5

Q ss_pred             CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh
Q 014696           74 GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR  153 (420)
Q Consensus        74 g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  153 (420)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+. |+.+++++|++              
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~--------------   65 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQVAELLLL--------------   65 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHH--------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHH--------------
Confidence            568888999999999999999999999999999999988886 89999999999 99998887774              


Q ss_pred             hhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC-CccHHHHHHHcCCHHHHHHHHHhCCC
Q 014696          154 KKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGAS  232 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~-g~TpLh~Aa~~g~~~iv~~Ll~~gad  232 (420)
                                                             +|++++   .++.. |.||||+|+..|+.+++++|+++|++
T Consensus        66 ---------------------------------------~g~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  103 (136)
T 1d9s_A           66 ---------------------------------------HGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (136)
T ss_dssp             ---------------------------------------HTCCSS---CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC
T ss_pred             ---------------------------------------CCCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                                   466777   66777 89999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          233 LTAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       233 ~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      ++.+|..|+||||+|+..++.+++++|+++++
T Consensus       104 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A          104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999988764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.9e-25  Score=181.07  Aligned_cols=125  Identities=42%  Similarity=0.666  Sum_probs=98.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      |+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCh
Confidence            57888888888888888888888888888888888888888888888888888888888887775 78888888887777


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccH
Q 014696          131 SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTS  210 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~Tp  210 (420)
                      .+++++|+                                                     ++|++++   ..+..|.||
T Consensus        81 ~~~~~~Ll-----------------------------------------------------~~g~~~~---~~~~~g~t~  104 (126)
T 1n0r_A           81 LEVVKLLL-----------------------------------------------------EAGADVN---AKDKNGRTP  104 (126)
T ss_dssp             HHHHHHHH-----------------------------------------------------HTTCCTT---CCCTTSCCH
T ss_pred             HHHHHHHH-----------------------------------------------------HcCCCCc---ccCCCCCCH
Confidence            66655555                                                     4456666   556678888


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCC
Q 014696          211 LHYAACGGNAQCCQILIAMGAS  232 (420)
Q Consensus       211 Lh~Aa~~g~~~iv~~Ll~~gad  232 (420)
                      ||+|+..|+.+++++|+++|+|
T Consensus       105 l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          105 LHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888888875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.4e-25  Score=185.15  Aligned_cols=87  Identities=36%  Similarity=0.489  Sum_probs=52.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~   92 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCC
Confidence            35666666666666666666666666666666666666666666666666666666666655554 55555555555555


Q ss_pred             HHHHHHHH
Q 014696          131 SRCIRLLL  138 (420)
Q Consensus       131 ~~iv~~Ll  138 (420)
                      .+++++|+
T Consensus        93 ~~~v~~Ll  100 (136)
T 2jab_A           93 LEIAEVLL  100 (136)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444333

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.1e-27  Score=231.12  Aligned_cols=228  Identities=14%  Similarity=0.095  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC--ccCCCCCHHHHHH-
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL--RNYRGQTALMQAC-   92 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~--~d~~g~TpL~~A~-   92 (420)
                      +.+|||.|+..|+.++|++|++++++.........+.||||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ 
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence            4469999999999999999999997532111101116999999999999999999999999887  8889999999999 


Q ss_pred             HcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhc-cCCCCchhcccccch
Q 014696           93 QHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKS-NKTGSILEFDERYFH  171 (420)
Q Consensus        93 ~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  171 (420)
                      .+|+.++|++|+++|+        .|.||||+|+..|+.+++++|++++........ .+.... ...............
T Consensus       208 ~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~-~l~~A~~~g~~~vv~~~~~~~~  278 (376)
T 2aja_A          208 GRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD-AFKLSNPDGVFDLVTKSECLQG  278 (376)
T ss_dssp             TTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT-TTTTTSSSSCCCCSSHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH-HHHHHHHCCChhhhcHHhhhhh
Confidence            9999999999999763        388999999999999999999987543211110 000000 000000000000000


Q ss_pred             h---hHHHHHHhcCCHHHHHHHHHc---------CCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 014696          172 L---EVLLHLTLNGHVESVQLLLDL---------GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN  239 (420)
Q Consensus       172 ~---~~~l~aa~~g~~~~v~~Ll~~---------ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~  239 (420)
                      .   ..++.....+..+.+++|++.         |++++       .+.||||+|+..|+.++|++|++.|   ..++..
T Consensus       279 ~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n-------~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~  348 (376)
T 2aja_A          279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-------DANELLRLALRLGNQGACALLLSIP---SVLALT  348 (376)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT-------CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSC
T ss_pred             HHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCC-------CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHH
Confidence            0   111222233457788888874         33333       5779999999999999999999875   568889


Q ss_pred             CCCHHHHHHHcCchhHHHHhhhC
Q 014696          240 GWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       240 G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      |+|++.+|...|+.+++++-+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          349 KANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             C----------------------
T ss_pred             HHhccccccccccccHHHHHHHH
Confidence            99999999999999998876654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=6.8e-26  Score=187.21  Aligned_cols=133  Identities=29%  Similarity=0.321  Sum_probs=100.8

Q ss_pred             CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh
Q 014696           74 GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR  153 (420)
Q Consensus        74 g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  153 (420)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+               
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll---------------   63 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLL---------------   63 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHH---------------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHH---------------
Confidence            5566 6677788888888888888888888888888877775 7888888888777766655555               


Q ss_pred             hhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCc
Q 014696          154 KKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~  233 (420)
                                                            ++|++++   ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        64 --------------------------------------~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           64 --------------------------------------QHKALVN---TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR  102 (137)
T ss_dssp             --------------------------------------HTTCCTT---CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             --------------------------------------HcCCccc---CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                                                  3455666   55667889999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHcCchhHHHHhhhCCC
Q 014696          234 TAENANGWTPLMVARSWHRTGLEDILSTQPE  264 (420)
Q Consensus       234 ~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~  264 (420)
                      +.+|..|+||+++|+..+..+++++|.+...
T Consensus       103 ~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          103 NAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999998888888888876654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2e-25  Score=188.81  Aligned_cols=143  Identities=22%  Similarity=0.184  Sum_probs=114.0

Q ss_pred             CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhc
Q 014696           77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKS  156 (420)
Q Consensus        77 v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  156 (420)
                      .+..+..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+ .|+.+++++|+                  
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll------------------   64 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLL------------------   64 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHH------------------
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHH------------------
Confidence            345677899999999999999999999999999999986 9999999984 66666655555                  


Q ss_pred             cCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc-HHHHHHHcCCHHHHHHHHHhCCCccc
Q 014696          157 NKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST-SLHYAACGGNAQCCQILIAMGASLTA  235 (420)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T-pLh~Aa~~g~~~iv~~Ll~~gad~~~  235 (420)
                                                         ++|++++   ..+..|.| |||+|+..|+.+++++|+++|++++.
T Consensus        65 -----------------------------------~~g~~~~---~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~  106 (156)
T 1bi7_B           65 -----------------------------------LHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV  106 (156)
T ss_dssp             -----------------------------------TTTCCCC---CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC
T ss_pred             -----------------------------------HcCCCCC---CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcc
Confidence                                               6678888   67888999 99999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchH
Q 014696          236 ENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPL  279 (420)
Q Consensus       236 ~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl  279 (420)
                      +|..|+||||+|+..|+.+++++|+++++....  .+..+.+|.
T Consensus       107 ~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~~  148 (156)
T 1bi7_B          107 RDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG--SNHARIDAA  148 (156)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc--cCcCcCccc
Confidence            999999999999999999999999999876322  344444443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.5e-24  Score=178.94  Aligned_cols=123  Identities=29%  Similarity=0.394  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++||.|+..|+.+++++|++++.+++..+  ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKD--EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45589999999999999999999998887654  4568999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLAD  140 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  140 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999986 999999999999999999999975

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=7.1e-25  Score=190.52  Aligned_cols=139  Identities=24%  Similarity=0.264  Sum_probs=121.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      .|+||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++..++..|+||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            45799999999999999999999 99999999999999999999999999999999999999888558999999999988


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   .+|..|.|
T Consensus       122 ~~~~v~~Ll-----------------------------------------------------~~ga~~~---~~d~~g~t  145 (183)
T 3deo_A          122 RPEVVEALV-----------------------------------------------------ELGADIE---VEDERGLT  145 (183)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HHTCCTT---CCCTTSCC
T ss_pred             cHHHHHHHH-----------------------------------------------------HcCCCCc---CCCCCCCC
Confidence            877766665                                                     5677777   67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      |||+|++.++                 ...+.++|++|+..|+.+++++|.++
T Consensus       146 pl~~A~~~~~-----------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          146 ALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHH-----------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcc-----------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999987432                 24568999999999999999999765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=8.2e-25  Score=205.31  Aligned_cols=138  Identities=26%  Similarity=0.285  Sum_probs=100.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCC------ccCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCccccCCCChHHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINL------RNYRGQTALMQACQH---GHWEVVLTLILYKANIHRADYLNGGTALH  123 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~------~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~  123 (420)
                      ++|+.|+..|+.+.++.|++.|++++.      .+..|+||||+|+..   |+.+++++|+++|++++..+. .|+||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-TCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-CCCCHHH
Confidence            458888888888888888888888777      577788888888876   778888888888888877775 7888888


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCccccccc
Q 014696          124 LAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV  203 (420)
Q Consensus       124 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~  203 (420)
                      +|+..|+.+++++|+                                                     ++|++++   .+
T Consensus       232 ~A~~~g~~~~v~~Ll-----------------------------------------------------~~gad~~---~~  255 (301)
T 2b0o_E          232 YAALYNQPDCLKLLL-----------------------------------------------------KGRALVG---TV  255 (301)
T ss_dssp             HHHHTTCHHHHHHHH-----------------------------------------------------HTTCCCS---CC
T ss_pred             HHHHcCCHHHHHHHH-----------------------------------------------------HcCCCCC---Cc
Confidence            888777666555554                                                     5667777   66


Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCch
Q 014696          204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRT  253 (420)
Q Consensus       204 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  253 (420)
                      |..|.||||+|+..|+.+++++|+++|++      .|.||||+|+++|+.
T Consensus       256 d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          256 NEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            77788888888888888888888888765      467888888877763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.1e-24  Score=198.27  Aligned_cols=87  Identities=26%  Similarity=0.304  Sum_probs=57.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      |+||||+|+..|+.+++++|++ |+++|.+|..|+||||+|+..|+.++|++|+++|++++..++..|.||||+|+..|+
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            4567777777777777777766 666666666677777777777777777777777776666664366677777666666


Q ss_pred             HHHHHHHH
Q 014696          131 SRCIRLLL  138 (420)
Q Consensus       131 ~~iv~~Ll  138 (420)
                      .+++++|+
T Consensus       124 ~~~v~~Ll  131 (244)
T 3ui2_A          124 PEVVEALV  131 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=170.63  Aligned_cols=124  Identities=40%  Similarity=0.566  Sum_probs=116.2

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      +.++|+.|++.|+.+++++|++.+.+++..+.  .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK--NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC--CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            46899999999999999999999988776544  4689999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI  142 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  142 (420)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999999999886 99999999999999999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.9e-24  Score=178.46  Aligned_cols=128  Identities=30%  Similarity=0.409  Sum_probs=102.6

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           47 TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        47 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY-QNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG-GGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC-CCCCHHHHHH
Confidence            345568899999999999999999998888888888899999999999999999999999888888876 8889999988


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA  206 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~  206 (420)
                      ..|+.+++++|+                                                     ++|++++   ..+..
T Consensus        85 ~~~~~~~v~~Ll-----------------------------------------------------~~ga~~~---~~~~~  108 (137)
T 3c5r_A           85 KNGHVDIVKLLL-----------------------------------------------------SYGASRN---AVNIF  108 (137)
T ss_dssp             HTTCHHHHHHHH-----------------------------------------------------HTTCCTT---CCCTT
T ss_pred             HcCCHHHHHHHH-----------------------------------------------------HcCCCCC---CCCCC
Confidence            887777666555                                                     5567777   66778


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCC
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGA  231 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~ga  231 (420)
                      |.||||+|+..+..+++++|.+.+.
T Consensus       109 g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          109 GLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             SCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCCHHHHHhhccHHHHHhhcccccc
Confidence            8899999988888888887776543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.4e-24  Score=193.06  Aligned_cols=134  Identities=27%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccccCCCChHHHHHHHcC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY-KANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++ |++++..+. .|.||||+|+..|
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKG  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcC
Confidence            46788888888888888888888888888888888888888888888888888877 778777775 7778887777776


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCcc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGST  209 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~T  209 (420)
                      +.+++++|+                                                     ++|++++   ..+..|.|
T Consensus       152 ~~~~v~~Ll-----------------------------------------------------~~ga~~~---~~~~~g~t  175 (222)
T 3ehr_A          152 YADIVQLLL-----------------------------------------------------AKGARTD---LRNIEKKL  175 (222)
T ss_dssp             CHHHHHHHH-----------------------------------------------------HHTCCSC---CCCTTSCC
T ss_pred             CHHHHHHHH-----------------------------------------------------HcCCCCc---cccCCCCC
Confidence            666555554                                                     4566666   56667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 014696          210 SLHYAACGGNAQCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       210 pLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~  241 (420)
                      |||+|+..|+.++++.|++.|++.+.++.+|+
T Consensus       176 ~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          176 AFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            77777777777777777777777766665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=197.29  Aligned_cols=124  Identities=21%  Similarity=0.240  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccc----cCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCccCCCCCHH
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRY----STFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDINLRNYRGQTAL   88 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v~~~d~~g~TpL   88 (420)
                      ..++|+.|+..|+++.|+.|++.+++++..    ..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            346899999999999999999999887753    1345679999999997   899999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 014696           89 MQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLAD  140 (420)
Q Consensus        89 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  140 (420)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~  281 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQA  281 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999986 999999999999999999998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=2.6e-23  Score=189.28  Aligned_cols=142  Identities=27%  Similarity=0.239  Sum_probs=126.4

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN-YRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A~~   93 (420)
                      .+.++||.|++.|+.++|+.|++ +.+++..+  ..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVD--ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC--TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            34589999999999999999999 77776654  456999999999999999999999999999998 889999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      .|+.++|++|+++|++++..+. .|.||||+|+..+                                            
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~--------------------------------------------  155 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDE-RGLTALELAREIL--------------------------------------------  155 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHH--------------------------------------------
T ss_pred             cCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHH--------------------------------------------
Confidence            9999999999999999999986 9999999998521                                            


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCc
Q 014696          174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL  233 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~  233 (420)
                                                   ....+.||||+|+..|+.+++++|++++.+.
T Consensus       156 -----------------------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          156 -----------------------------KTTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             -----------------------------TTCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             -----------------------------hccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence                                         1135789999999999999999999986553

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.4e-23  Score=169.90  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             cCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       203 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|.
T Consensus        69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            3445566666666666666666666666666666666666666663

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=8.2e-23  Score=177.44  Aligned_cols=110  Identities=33%  Similarity=0.307  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN-YRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A~~   93 (420)
                      .+.++||.|+..|+.++++.|++ +.+++..+  ..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVD--ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            34589999999999999999999 77766644  456999999999999999999999999999998 889999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~  153 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDE-RGLTALELAREI  153 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHh
Confidence            9999999999999999999986 999999999863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2.8e-23  Score=168.13  Aligned_cols=116  Identities=28%  Similarity=0.335  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      +.+.++||.|+..|+.+++++|++.+++++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT--TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            3556899999999999999999999988776544  56899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           94 HGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      .|+.+++++|+++|++++..+. .|.||||+|...+..+
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHHHHH
Confidence            9999999999999999999986 9999999995443333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.1e-23  Score=188.73  Aligned_cols=131  Identities=22%  Similarity=0.230  Sum_probs=112.4

Q ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCC
Q 014696           80 RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKT  159 (420)
Q Consensus        80 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  159 (420)
                      .+..|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+                     
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll---------------------  126 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLF---------------------  126 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHT---------------------
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHH---------------------
Confidence            466789999999999999999999999999999886 9999999999998888777776                     


Q ss_pred             CCchhcccccchhhHHHHHHhcCCHHHHHHHHHc-CCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 014696          160 GSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL-GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENA  238 (420)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~  238 (420)
                                                      +. |++++   ..+..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       127 --------------------------------~~~g~~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          127 --------------------------------TQPNIELN---QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             --------------------------------TSTTCCCC---CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT
T ss_pred             --------------------------------cCCCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence                                            34 77787   7788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          239 NGWTPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       239 ~G~TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                      .|+|||++|+..++.++++.|+..+....
T Consensus       172 ~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          172 EKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             TSCCHHHHCCSHHHHHHHC----------
T ss_pred             CCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            99999999999999999999999887643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=5.9e-22  Score=183.71  Aligned_cols=126  Identities=22%  Similarity=0.267  Sum_probs=116.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccc----cCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCccCCCCCHHHH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRY----STFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDINLRNYRGQTALMQ   90 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~   90 (420)
                      .+|+.|++.|+++.++.+++.+.+++..    ..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            5799999999999999999999886532    2345679999999999   99999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 014696           91 ACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPS  144 (420)
Q Consensus        91 A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~  144 (420)
                      |+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++...
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999997 9999999999999999999999987643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=5.4e-22  Score=190.60  Aligned_cols=142  Identities=25%  Similarity=0.265  Sum_probs=96.5

Q ss_pred             CcHHHHHHHc-CcHHHHHHHHHcCCCCCCcc--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHc
Q 014696           52 NSPLHYSAAQ-GHHEIVSLLIESGVDINLRN--YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALN  128 (420)
Q Consensus        52 ~t~Lh~Aa~~-g~~~iv~~Ll~~g~~v~~~d--~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  128 (420)
                      .|+||+|+.. |+.+++++|+++|+++|..+  ..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-~G~TpLh~A~~~  278 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence            3688888888 88888888888888888877  7788888888888888888888888888887775 788888888877


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      |+.+++++|+                                                     ++|++++   ..|..|.
T Consensus       279 g~~~~v~~LL-----------------------------------------------------~~Gad~~---~~d~~G~  302 (368)
T 3jue_A          279 GHTGLACLFL-----------------------------------------------------KRGADLG---ARDSEGR  302 (368)
T ss_dssp             TCHHHHHHHH-----------------------------------------------------HTTCCTT---CCCTTSC
T ss_pred             CcHHHHHHHH-----------------------------------------------------HCcCCCC---CcCCCCC
Confidence            7766555554                                                     5567777   6677788


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC---CCccccccCCCCHHHHHHHc
Q 014696          209 TSLHYAACGGNAQCCQILIAMG---ASLTAENANGWTPLMVARSW  250 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~g---ad~~~~d~~G~TpL~~A~~~  250 (420)
                      ||||+|+..|+.+++++|++++   ++....+..+.|+++++...
T Consensus       303 TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          303 DPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            8888888888888888888765   33334455667777776654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=7.5e-22  Score=189.61  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=117.6

Q ss_pred             CCHHHHHHHHc-CCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           16 SGERLVSAARD-GDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        16 ~~~~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+++||.|+.. |++++++.|++.+++++..+.+..|.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34699999999 99999999999999998877556779999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhc
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADY  141 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  141 (420)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+..+
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999987 9999999999999999999999653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1e-21  Score=150.66  Aligned_cols=91  Identities=44%  Similarity=0.669  Sum_probs=84.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999886 89999999999999


Q ss_pred             HHHHHHHHHhcC
Q 014696          131 SRCIRLLLADYI  142 (420)
Q Consensus       131 ~~iv~~Ll~~~~  142 (420)
                      .+++++|+++++
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.3e-21  Score=181.32  Aligned_cols=194  Identities=20%  Similarity=0.214  Sum_probs=134.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~   93 (420)
                      .+.+.++.+...||....+.+...-+......... +...    ..+...-..+++... ....+.......++|+.|+.
T Consensus        65 ~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~-~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~  139 (278)
T 1dcq_A           65 LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNP-GSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK  139 (278)
T ss_dssp             CCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCT-TCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCC-CCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence            44567888888888766665543332221111111 1112    111222222233322 11222222234578999999


Q ss_pred             cCcHHHHHHHHHcCCCCCcc------ccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc
Q 014696           94 HGHWEVVLTLILYKANIHRA------DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE  167 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~~~~~------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (420)
                      .|+.+.++.+++.|++++..      +. .|.||||+|+..|+.                                    
T Consensus       140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~------------------------------------  182 (278)
T 1dcq_A          140 TRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDR------------------------------------  182 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCT------------------------------------
T ss_pred             hcccHHHHHHHHhhcchhhhcccccccc-CCCCcchHHHHhccc------------------------------------
Confidence            99999999999999885433      43 789999999887210                                    


Q ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       168 ~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                                    |+.+++++|+++|++++   .+|..|.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|
T Consensus       183 --------------~~~~~v~~Ll~~ga~in---~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  245 (278)
T 1dcq_A          183 --------------TSLHIVDFLVQNSGNLD---KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  245 (278)
T ss_dssp             --------------TTHHHHHHHHHHCSCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             --------------chHHHHHHHHHCCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHH
Confidence                          33445555667788988   7788999999999999999999999999999999999999999999


Q ss_pred             HHcCchhHHHHhhhCCCCcc
Q 014696          248 RSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       248 ~~~g~~~i~~lL~~~~~~~~  267 (420)
                      +..|+.+++++|+++++...
T Consensus       246 ~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          246 KRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHTTCHHHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999887643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=7.7e-21  Score=151.67  Aligned_cols=108  Identities=34%  Similarity=0.443  Sum_probs=68.9

Q ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCC
Q 014696           80 RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKT  159 (420)
Q Consensus        80 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  159 (420)
                      +|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+                     
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll---------------------   62 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLL---------------------   62 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS-SSCCTTHHHHTTTCHHHHHHHT---------------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHH---------------------
Confidence            455666666666666666666666666666666554 6666666666655555444443                     


Q ss_pred             CCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 014696          160 GSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN  239 (420)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~  239 (420)
                                                      ++|++++   ..+..|.||||+|+..|+.+++++|+++|+++|.++..
T Consensus        63 --------------------------------~~g~~~~---~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           63 --------------------------------AKGADVN---ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             --------------------------------TTTCCTT---CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             --------------------------------HcCCCCc---ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcc
Confidence                                            3445555   45566777777777777778888888778887777777


Q ss_pred             CCCHH
Q 014696          240 GWTPL  244 (420)
Q Consensus       240 G~TpL  244 (420)
                      |.||-
T Consensus       108 ~~~~~  112 (115)
T 2l6b_A          108 SSHHH  112 (115)
T ss_dssp             CC---
T ss_pred             ccccc
Confidence            77763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=7.4e-20  Score=140.18  Aligned_cols=92  Identities=38%  Similarity=0.525  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      +.++||.|+..|+.+++++|++.+++++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK--NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            45899999999999999999999998876554  5689999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCC
Q 014696           96 HWEVVLTLILYKAN  109 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~  109 (420)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=5.3e-20  Score=146.79  Aligned_cols=109  Identities=32%  Similarity=0.460  Sum_probs=75.6

Q ss_pred             cccCCCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHH
Q 014696           10 SFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALM   89 (420)
Q Consensus        10 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~   89 (420)
                      .+....+.++||.|+..|+.+++++|++.+++++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS--KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC--SSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            3444555667777777777777777777776665543  34467777777777777777777777777777777777777


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCccccCCCChH
Q 014696           90 QACQHGHWEVVLTLILYKANIHRADYLNGGTA  121 (420)
Q Consensus        90 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tp  121 (420)
                      +|+..|+.+++++|+++|++++..+. .|.+|
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~-~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSW-GSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSC-CCC--
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCc-ccccc
Confidence            77777777777777777777777665 56555

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=9.3e-19  Score=138.54  Aligned_cols=89  Identities=28%  Similarity=0.374  Sum_probs=83.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHH
Q 014696           48 FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus        48 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~   99 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDISID   99 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-CCCcHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999886 99999999999


Q ss_pred             cCCHHHHHHH
Q 014696          128 NGHSRCIRLL  137 (420)
Q Consensus       128 ~g~~~iv~~L  137 (420)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=9.7e-17  Score=126.81  Aligned_cols=88  Identities=31%  Similarity=0.490  Sum_probs=81.7

Q ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           14 SASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        14 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      ..+.++||.|+..|+.+++++|++.+++++..+  ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d--~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKD--KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            356689999999999999999999998887654  456899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHH
Q 014696           94 HGHWEVVLTL  103 (420)
Q Consensus        94 ~g~~~iv~~L  103 (420)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999987

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=3.8e-09  Score=74.72  Aligned_cols=55  Identities=25%  Similarity=0.573  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccC
Q 014696          294 SDSLSTCPDPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLP  364 (420)
Q Consensus       294 ~~~~~~~~d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  364 (420)
                      ......+...|.||++....+++.||||. +|..|+..                ...||+||..|..++++-
T Consensus         8 ~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----------------~~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A            8 VEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----------------FQQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----------------CSSCTTTCCCCCCEECCC
T ss_pred             ccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----------------CCCCCCCCcchhceEEee
Confidence            33444556789999999999999999999 99999962                135999999999998864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.68  E-value=9.5e-09  Score=71.76  Aligned_cols=52  Identities=33%  Similarity=0.597  Sum_probs=43.4

Q ss_pred             CCCCcccccCccceEEEe--CCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          300 CPDPCVVCLERKCTVAAK--GCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~--~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      +...|.||+++...+++.  ||||. +|..|+..+-...            ..||+||+.|.+++++
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------------KPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------------CCCTTTCCCCCEEEEE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------------CcCCCcCcchhceEee
Confidence            346799999999999887  99999 8999998876432            3499999999988764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.62  E-value=1.9e-08  Score=69.97  Aligned_cols=51  Identities=27%  Similarity=0.542  Sum_probs=41.7

Q ss_pred             CCCcccccCccceEEEe--CCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          301 PDPCVVCLERKCTVAAK--GCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~--~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      .+.|.||+++....+..  ||||. +|..|+..+-...            ..||+||+.|.+++++
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------------ASCPICKKEIQLVIKV   60 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------------CBCTTTCCBCCEEEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------------CcCCCcCchhhceEEE
Confidence            46799999988776666  99999 9999998875332            3599999999998775

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.52  E-value=1e-07  Score=69.53  Aligned_cols=46  Identities=30%  Similarity=0.730  Sum_probs=40.3

Q ss_pred             CCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ..|.||++....++..||||. +|..|+..+                ..||+||..|.+++++
T Consensus        19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   65 (79)
T 2yho_A           19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL----------------QSCPVCRSRVEHVQHV   65 (79)
T ss_dssp             TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----------------SBCTTTCCBCCEEEEC
T ss_pred             CEeEEeCcccCcEEEECCCCHHHHHHHHHhc----------------CcCCCCCchhhCeEEE
Confidence            579999999999999999999 999999322                2699999999999875

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.35  E-value=3.7e-07  Score=65.67  Aligned_cols=46  Identities=30%  Similarity=0.701  Sum_probs=39.7

Q ss_pred             CCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ..|.||++.....+..||||. +|..|...+                ..||+||..|.+.+++
T Consensus        25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred             CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence            579999999999999999999 999998322                4599999999988764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=1.3e-06  Score=62.80  Aligned_cols=55  Identities=27%  Similarity=0.632  Sum_probs=42.6

Q ss_pred             CCCCCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCC
Q 014696          299 TCPDPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPG  365 (420)
Q Consensus       299 ~~~d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  365 (420)
                      ...+.|.||++..   -.+...+|||.+|..|........            ..||+||..|..+.+++.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~~   70 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR------------KVCPLCNMPVLQLAQLSG   70 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC------------SBCTTTCCBCSSCCSCCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC------------CcCCCcCcccccccccCC
Confidence            4457899999864   334556999999999998876443            259999999998877765

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.1e-07  Score=67.18  Aligned_cols=46  Identities=30%  Similarity=0.681  Sum_probs=39.1

Q ss_pred             CCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ..|.||++.....+..||||. +|..|...                ...||+||..|...+++
T Consensus        26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----------------~~~CP~Cr~~i~~~~~i   72 (75)
T 2ecg_A           26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEA----------------VDKCPMCYTVITFKQKI   72 (75)
T ss_dssp             HSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----------------CSBCTTTCCBCCCCCBC
T ss_pred             CCCCcCCCCCCCEEEecCCCHHHHHHHhhC----------------CCCCccCCceecCcEEE
Confidence            469999999999999999999 99999832                14599999999887664

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=2e-06  Score=61.57  Aligned_cols=52  Identities=27%  Similarity=0.661  Sum_probs=40.6

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++..-..+..+|||.+|..|...+....         .....||+||..|..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS---------CSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC---------CCCCCCCCCCCcCCc
Confidence            4456799999988887888999999999998875421         234579999988753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.20  E-value=1.7e-06  Score=61.06  Aligned_cols=54  Identities=31%  Similarity=0.616  Sum_probs=42.5

Q ss_pred             CCCCCcccccCccce-EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccC
Q 014696          299 TCPDPCVVCLERKCT-VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLP  364 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~-v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  364 (420)
                      ...+.|.||++.... +...+|||.+|..|........            ..||+||..+..+.+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence            345789999998766 5788999999999998775432            25999999998876543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=2.1e-06  Score=61.11  Aligned_cols=50  Identities=26%  Similarity=0.521  Sum_probs=40.0

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .+...|.||++.....+..+|||.+|..|...+....            ..||+||..|..-
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCHh
Confidence            3456799999988888888999999999997664322            4599999998754

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=2.1e-06  Score=60.72  Aligned_cols=50  Identities=26%  Similarity=0.671  Sum_probs=38.7

Q ss_pred             CCCCCCcccccCccceE-------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          298 STCPDPCVVCLERKCTV-------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       298 ~~~~d~C~vC~~~~~~v-------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ..+...|.||++..-..       +..+|||.+|..|...+....            ..||+||..|.+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccCc
Confidence            34567899999876543       778999999999998876442            359999988753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.09  E-value=3.2e-06  Score=56.72  Aligned_cols=47  Identities=26%  Similarity=0.508  Sum_probs=37.4

Q ss_pred             CCCCcccccCccce----EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKCT----VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~~----v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      ..+.|.||++..-.    +...+|||.+|..|...+....            ..||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCC
Confidence            35789999987643    7888999999999998876443            35999998774

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=1.7e-06  Score=61.36  Aligned_cols=51  Identities=24%  Similarity=0.691  Sum_probs=40.4

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDK  362 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  362 (420)
                      .+...|.||++.... +..+|||.+|..|...+..            ....||+||..|.+...
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~------------~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD------------RHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC------------CCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH------------CcCcCCCcCCcccCCCc
Confidence            445789999998888 7789999999999976532            23569999998886543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.04  E-value=7.3e-06  Score=59.56  Aligned_cols=57  Identities=21%  Similarity=0.433  Sum_probs=40.3

Q ss_pred             CCCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          298 STCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       298 ~~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ..+...|.||++.....+..+|||.+|..|...+.....     ....+...||+||..+..
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~-----~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV-----TSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS-----SSCCCCCCCSSSCCCCCS
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc-----cCCCCCCcCCCCCCcCCH
Confidence            344567999998777666789999999999955433211     011245679999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.04  E-value=7.8e-06  Score=57.71  Aligned_cols=50  Identities=30%  Similarity=0.538  Sum_probs=38.4

Q ss_pred             CCCCCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          299 TCPDPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       299 ~~~d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .....|.||++..   -.+...+|||.+|..|...+....            ..||+||..|...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN------------KKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC------------CCCcCcCccccCc
Confidence            3456799997643   456778999999999998876543            2499999988764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.04  E-value=3.1e-06  Score=68.88  Aligned_cols=47  Identities=32%  Similarity=0.728  Sum_probs=38.4

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ..|.||++..-..+..+|||.+|..|........            ..||+||..|...
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK------------IECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC------------SBCTTTCCBCCCE
T ss_pred             CCCcccCcccCCceECCCCCCccHHHHHHHHHcC------------CcCCCCCCcCCCC
Confidence            3699999988888889999999999997764322            3599999998654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=6.6e-06  Score=58.68  Aligned_cols=50  Identities=20%  Similarity=0.402  Sum_probs=39.0

Q ss_pred             CCCCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          300 CPDPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      +...|.||++.....+.. +|||.+|..|........            ..||+||..|..-.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSSC
T ss_pred             CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCccc
Confidence            345799999987766665 999999999998876432            35999999887643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=6.6e-06  Score=61.18  Aligned_cols=52  Identities=25%  Similarity=0.547  Sum_probs=40.3

Q ss_pred             CCCCCcccccCccce----EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCT----VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~----v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++....    ....+|||.+|..|...+....         .....||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---------INGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---------SSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---------CCCcCCCCCCCcccc
Confidence            345679999998776    6777999999999998887543         134579999987643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=7.2e-06  Score=59.98  Aligned_cols=47  Identities=26%  Similarity=0.564  Sum_probs=38.9

Q ss_pred             CCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      ....|.||++.....+..+|||.+|..|........            ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT------------PRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC------------SBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC------------CcCCCcCcccc
Confidence            345699999988777889999999999998876432            35999999986

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.01  E-value=4.7e-06  Score=55.90  Aligned_cols=47  Identities=30%  Similarity=0.595  Sum_probs=35.3

Q ss_pred             CCCCcccccCccce---EEEeC-CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKCT---VAAKG-CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~~---v~~~~-cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      +...|.||++..-.   +...+ |||.+|..|....-..            ...||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------------~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------------HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------------CCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------------CCcCcCCCCEeE
Confidence            45689999987655   55666 9999999999766422            235999998764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.00  E-value=5.8e-06  Score=59.33  Aligned_cols=52  Identities=21%  Similarity=0.495  Sum_probs=40.4

Q ss_pred             CCCCcccccCccceEEEeC-CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          300 CPDPCVVCLERKCTVAAKG-CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~-cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      +...|.||++..-.-+..+ |||.+|..|........          +...||+||..+.+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSCCTT
T ss_pred             CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCCCcc
Confidence            3456999999877777789 99999999998887543          2346999999765543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=5.3e-06  Score=58.05  Aligned_cols=50  Identities=30%  Similarity=0.630  Sum_probs=38.4

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++.....+..+|||.+|..|.......           ....||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-----------SSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-----------SSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-----------CcCCCCCCCcCCCh
Confidence            344569999987766666899999999999887631           23459999988754

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.98  E-value=1.3e-05  Score=58.15  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=39.2

Q ss_pred             CCCCCcccccCcc---ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          299 TCPDPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       299 ~~~d~C~vC~~~~---~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      .....|.||++..   -.+...+|||.+|..|...+....            ..||+||..|..-...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccC
Confidence            3456899997653   445667999999999998776332            3599999998875433

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.96  E-value=1.3e-05  Score=59.08  Aligned_cols=54  Identities=28%  Similarity=0.574  Sum_probs=41.6

Q ss_pred             CCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ....|.||++....-+..+|||.+|..|...+.....      ...+...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR------NTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB------CTTSCBCCTTTCCCCCT
T ss_pred             cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc------CCCCCCCCCCCCCcCCH
Confidence            3567999999877767789999999999988776542      11235679999988764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.95  E-value=7.5e-06  Score=61.33  Aligned_cols=49  Identities=20%  Similarity=0.439  Sum_probs=37.1

Q ss_pred             CCCCCcccccCccce---EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCT---VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~---v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .....|.||++..-.   +...+|||.||..|...+....            ..||+||..|..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~------------~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS------------GTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT------------CBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC------------CcCcCcCccCCC
Confidence            345679999866444   6778999999999998876432            259999987753

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.94  E-value=4.7e-06  Score=59.23  Aligned_cols=49  Identities=27%  Similarity=0.682  Sum_probs=38.0

Q ss_pred             CCCCCcccccCccceE-------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTV-------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v-------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++.....       +..+|||.+|..|...+....            ..||+||..+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccCh
Confidence            3456799999875443       778999999999998876433            259999988764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.94  E-value=1.2e-05  Score=58.14  Aligned_cols=51  Identities=22%  Similarity=0.436  Sum_probs=35.8

Q ss_pred             CCCCCcccccCccc--eEEEeC--CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          299 TCPDPCVVCLERKC--TVAAKG--CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       299 ~~~d~C~vC~~~~~--~v~~~~--cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .+...|.||++..-  .+.+.+  |||.+|..|+..+...           +...||.||..+..-
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCCC
Confidence            34567999999441  223344  9999999999777532           234699999988753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.90  E-value=6.4e-06  Score=65.66  Aligned_cols=48  Identities=23%  Similarity=0.534  Sum_probs=39.1

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ..|.||++.....+..+|||.+|..|........           ...||+||..+...
T Consensus        53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~  100 (124)
T 3fl2_A           53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ-----------VFSCPACRYDLGRS  100 (124)
T ss_dssp             TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCTT
T ss_pred             CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC-----------cCCCCCCCccCCCC
Confidence            4699999988877888999999999998776422           34699999998763

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.89  E-value=6.3e-06  Score=57.15  Aligned_cols=47  Identities=28%  Similarity=0.697  Sum_probs=36.7

Q ss_pred             CCCcccccCccce-------EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCT-------VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~-------v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ...|.||++....       ++..+|||.+|..|........            ..||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence            4579999986544       3777999999999998876542            259999988764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=1.6e-05  Score=58.52  Aligned_cols=55  Identities=25%  Similarity=0.542  Sum_probs=41.3

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++.....+..+|||.+|..|...+......      ..+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCH
Confidence            345679999998777677799999999999887654200      1234679999998874

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.3e-05  Score=57.54  Aligned_cols=49  Identities=29%  Similarity=0.621  Sum_probs=37.0

Q ss_pred             CCCCCcccccCc---cceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLER---KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~---~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+.+.|.||++.   .-.+...+|||.+|..|...+....            ..||+||..|..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCCC
Confidence            345679999954   3345778999999999998876443            249999988754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.88  E-value=6.2e-06  Score=61.93  Aligned_cols=54  Identities=22%  Similarity=0.499  Sum_probs=40.3

Q ss_pred             CCCCcccccCccceEEEeC-CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          300 CPDPCVVCLERKCTVAAKG-CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~-cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      +.-.|.||++..-.-+..+ |||.+|..|........          +...||+||..+.....+
T Consensus        12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~~~~~~   66 (92)
T 3ztg_A           12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDVSPDAL   66 (92)
T ss_dssp             TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC----------TTCCCTTTCCSSCCTTSC
T ss_pred             cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc----------CCCcCcCCCCcCCCcccc
Confidence            3456999998776667788 99999999998776432          224699999987544333

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.87  E-value=1.9e-05  Score=54.96  Aligned_cols=48  Identities=21%  Similarity=0.524  Sum_probs=34.9

Q ss_pred             CCCcccccC----ccce-EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLE----RKCT-VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~----~~~~-v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ...|.||++    .+.. ++..+|||.+|..|...+....           ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-----------CCcCCCCCCcccc
Confidence            457999999    2222 2567999999999998775422           3469999988754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.82  E-value=8e-06  Score=76.54  Aligned_cols=48  Identities=31%  Similarity=0.685  Sum_probs=41.6

Q ss_pred             CCCcccccCccceEEEeCCCcc-cchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccC
Q 014696          301 PDPCVVCLERKCTVAAKGCDHE-FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLP  364 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~-~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  364 (420)
                      ...|.||++.....+..||||. +|..|+..+                ..||+||..|.+.++++
T Consensus       295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred             CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence            3679999999999999999999 999998422                45999999999998875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.81  E-value=1.1e-05  Score=62.91  Aligned_cols=49  Identities=37%  Similarity=0.793  Sum_probs=39.3

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ..|.||++.....+..+|||.+|..|........         .+...||+||..+..
T Consensus        22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK---------KGPSQCPLCKNDITK   70 (112)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS---------SSSCCCTTTSCCCCT
T ss_pred             CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC---------CCCCCCcCCCCcCCH
Confidence            4699999987776778999999999998887644         123569999998875

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.80  E-value=1e-05  Score=54.46  Aligned_cols=43  Identities=21%  Similarity=0.497  Sum_probs=34.5

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      .-.|.||++........+|||.+|..|...               ....||+||..+.
T Consensus         6 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred             CCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence            346999999887778889999999999722               2456999998765

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.77  E-value=2.2e-05  Score=74.10  Aligned_cols=51  Identities=27%  Similarity=0.642  Sum_probs=42.4

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      ..|.||++.....+..+|||.+|..|.......           ....||+||..|.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-----------~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-----------EGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-----------TCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-----------CCCCCCCCCCccCCceeE
Confidence            579999999999999999999999999777642           124599999999887544

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.76  E-value=1.4e-05  Score=65.80  Aligned_cols=51  Identities=25%  Similarity=0.539  Sum_probs=40.7

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL  363 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  363 (420)
                      -.|.||++.....+..+|||.+|..|........           ...||+||..+..-..+
T Consensus        79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~~~l  129 (150)
T 1z6u_A           79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-----------VFSCPACRHDLGQNYIM  129 (150)
T ss_dssp             TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCTTCCC
T ss_pred             CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-----------CCcCCCCCccCCCCCCC
Confidence            4699999988888889999999999998877532           23599999998765333

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.73  E-value=2e-05  Score=60.07  Aligned_cols=46  Identities=22%  Similarity=0.566  Sum_probs=38.2

Q ss_pred             CCcccccCccceEEE-eCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          302 DPCVVCLERKCTVAA-KGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       302 d~C~vC~~~~~~v~~-~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      ..|.||++..-..+. .+|||.+|..|.........           ..||+||..+.
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~   69 (100)
T 3lrq_A           23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQ   69 (100)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCC
T ss_pred             CCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCC
Confidence            569999998877777 89999999999988775541           45999999884

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.70  E-value=4.8e-05  Score=52.46  Aligned_cols=47  Identities=30%  Similarity=0.688  Sum_probs=36.5

Q ss_pred             CCCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          298 STCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       298 ~~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      ..+...|.||++..-..+..+|||.+|..|...+....         .....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC---------SSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC---------CCCCcCcCC
Confidence            34456799999988777778999999999998887532         124569998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.69  E-value=3.2e-05  Score=58.83  Aligned_cols=46  Identities=24%  Similarity=0.590  Sum_probs=37.2

Q ss_pred             CCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          302 DPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      ..|.||++..-.-+.. +|||.+|..|........            ..||+||..+..
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   69 (99)
T 2y43_A           23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------------TQCPTCCVTVTE   69 (99)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------------CBCTTTCCBCCG
T ss_pred             CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------------CCCCCCCCcCCh
Confidence            4699999887766666 899999999998876432            359999998875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.64  E-value=3.1e-05  Score=60.69  Aligned_cols=48  Identities=27%  Similarity=0.688  Sum_probs=37.3

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ..|.||++.....+..+|||.+|..|......           .+...||+||..+...
T Consensus        16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~~CP~Cr~~~~~~   63 (115)
T 3l11_A           16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVE-----------KASLCCPFCRRRVSSW   63 (115)
T ss_dssp             HBCTTTCSBCSSCEECTTSCEECHHHHCCCCC-----------TTTSBCTTTCCBCHHH
T ss_pred             CCCccCCcccCceeEcCCCCHHhHHHHHHHHh-----------HCcCCCCCCCcccCcc
Confidence            46999999877777789999999999943321           1235699999999863

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.64  E-value=7.1e-05  Score=54.10  Aligned_cols=49  Identities=12%  Similarity=0.162  Sum_probs=39.0

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.+|++-.-.-+..+|||.+|..|.......           +...||+||..+..-
T Consensus         8 ~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSC
T ss_pred             cCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChh
Confidence            4579999987777777899999999999887643           234699999988643

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=7e-05  Score=50.60  Aligned_cols=47  Identities=30%  Similarity=0.682  Sum_probs=35.7

Q ss_pred             CCCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCC
Q 014696          298 STCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLC  353 (420)
Q Consensus       298 ~~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~C  353 (420)
                      ..+...|.||++..-..+..+|||.+|..|........         .....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL---------ERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS---------CCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc---------CCCCCCCCC
Confidence            34456799999987777778999999999998875431         134569998

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.63  E-value=2.3e-05  Score=65.75  Aligned_cols=52  Identities=29%  Similarity=0.654  Sum_probs=40.5

Q ss_pred             CCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccC
Q 014696          302 DPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLP  364 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  364 (420)
                      ..|.||++..-..+.. +|||.+|..|...+....           ...||+||..|.....++
T Consensus        55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~~~l~  107 (165)
T 2ckl_B           55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-----------NKECPTCRKKLVSKRSLR  107 (165)
T ss_dssp             HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCSGGGEE
T ss_pred             CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-----------cCCCCCCCCcCCCcccCC
Confidence            3699999987776666 999999999998876532           345999999997654443

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.59  E-value=5.5e-05  Score=58.56  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=38.5

Q ss_pred             CCCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ...|.||++..-.-+.. +|||.+|..|........            ..||.||..+..-
T Consensus        15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHKT   63 (108)
T ss_dssp             GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCSS
T ss_pred             cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCcccccc
Confidence            45799999987777776 999999999998776432            4599999988753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=8.1e-05  Score=54.26  Aligned_cols=47  Identities=30%  Similarity=0.629  Sum_probs=33.6

Q ss_pred             CCCCcccccCccc---------------eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKC---------------TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~---------------~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      +.+.|.||++..-               .+...+|||.|+..|........            ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------------NRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------------CBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------------CCCCCcCCCcc
Confidence            4566888876542               33444699999999998775433            25999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.48  E-value=7.2e-05  Score=58.46  Aligned_cols=53  Identities=25%  Similarity=0.598  Sum_probs=37.9

Q ss_pred             CCCcccccCcc------------------ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERK------------------CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~------------------~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .+.|.||++..                  ..+...+|||.||..|.........       ......||+||..+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-------~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-------KDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-------CSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-------CCCCCcCCCCCCccCCC
Confidence            46899998864                  2334779999999999988764321       01245699999877654

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.39  E-value=0.00011  Score=57.79  Aligned_cols=50  Identities=20%  Similarity=0.489  Sum_probs=39.5

Q ss_pred             CCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      +.-.|.||++....-+..+|||.+|..|.........           ..||+||..+..-
T Consensus        17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~   66 (118)
T 3hct_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLEN   66 (118)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred             CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHH
Confidence            3457999999877777789999999999987764431           2599999988763

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.36  E-value=0.00014  Score=57.04  Aligned_cols=48  Identities=25%  Similarity=0.522  Sum_probs=39.2

Q ss_pred             CCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          302 DPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      ..|.||++..-..+..+|||.+|..|........           ...||+||..+..-
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT   71 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHh
Confidence            4699999988777778999999999998776542           23599999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.28  E-value=0.00015  Score=58.18  Aligned_cols=49  Identities=27%  Similarity=0.649  Sum_probs=38.2

Q ss_pred             CCCCcccccCccceE-------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          300 CPDPCVVCLERKCTV-------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v-------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      +...|.||++..-.-       +..+|||.+|..|........            ..||+||..+..-
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------------SBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------------CCCCCCCCcCccc
Confidence            456799999876543       788999999999998876433            2599999988643

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.28  E-value=0.0003  Score=53.93  Aligned_cols=46  Identities=33%  Similarity=0.606  Sum_probs=34.3

Q ss_pred             CCCCcccccCcc------------------ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          300 CPDPCVVCLERK------------------CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       300 ~~d~C~vC~~~~------------------~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      ..+.|.||++..                  +.+...+|||.++..|........            ..||+||+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------------SBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------------CcCcCCCCcc
Confidence            457788887542                  346778999999999998876443            3499999874

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.18  E-value=0.00012  Score=54.94  Aligned_cols=52  Identities=25%  Similarity=0.553  Sum_probs=36.2

Q ss_pred             CCCcccccCccce--E-EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCC--Cccc
Q 014696          301 PDPCVVCLERKCT--V-AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPL--CRHG  356 (420)
Q Consensus       301 ~d~C~vC~~~~~~--v-~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~--CR~~  356 (420)
                      .-.|.||++....  + ...+|||.+|..|+..+....    +..+....+.||.  ||..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~----i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----IKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHH----HHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHH----hhcCCcccccCccccCCCC
Confidence            3469999986432  2 234799999999999887654    1222224578999  9987

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.17  E-value=9.4e-05  Score=58.11  Aligned_cols=43  Identities=26%  Similarity=0.597  Sum_probs=34.9

Q ss_pred             CCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          302 DPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       302 d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      -.|.||++....-+.. +|||.+|..|......              ..||+||..+.
T Consensus        23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~   66 (117)
T 1jm7_B           23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAW   66 (117)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCS
T ss_pred             CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCc
Confidence            5699999987777777 9999999999955532              45999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=97.05  E-value=0.00014  Score=59.01  Aligned_cols=48  Identities=21%  Similarity=0.472  Sum_probs=37.5

Q ss_pred             CCCCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          299 TCPDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .+.-.|.||++-...-+..+|||.+|..|...+....           ...||.||..|
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-----------PQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-----------CEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-----------CCCCCCCCCcc
Confidence            3345699999977766778999999999998876422           23599999986

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=96.91  E-value=0.00051  Score=54.98  Aligned_cols=49  Identities=27%  Similarity=0.682  Sum_probs=37.7

Q ss_pred             CCCCCcccccCccceE-------EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          299 TCPDPCVVCLERKCTV-------AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       299 ~~~d~C~vC~~~~~~v-------~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .+...|.||++..-..       +..+|||.+|..|....-...            ..||+||..|..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCCh
Confidence            4456799999865542       777999999999998776443            359999988764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.86  E-value=0.0018  Score=46.78  Aligned_cols=58  Identities=21%  Similarity=0.440  Sum_probs=40.8

Q ss_pred             CCCCCCCcccccCcc---ceEEEeCCC-----cccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCC
Q 014696          297 LSTCPDPCVVCLERK---CTVAAKGCD-----HEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPG  365 (420)
Q Consensus       297 ~~~~~d~C~vC~~~~---~~v~~~~cg-----H~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  365 (420)
                      ...+.+.|.||++..   ..+ ..||+     |.+...|........          +...||+||..+.--.++++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~----------~~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS----------DTRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH----------CCSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC----------CCCCCCCCCCeeecCcccCC
Confidence            344567899999642   233 47996     999999998876543          12469999999876555543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.58  E-value=0.0012  Score=55.41  Aligned_cols=49  Identities=20%  Similarity=0.499  Sum_probs=38.5

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.||++....-+..+|||.+|..|...+-...           ...||.||..|..-
T Consensus        18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-----------GHKCPVDNEILLEN   66 (170)
T ss_dssp             GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-----------CCCCCCCccCcchh
Confidence            44699999877776778999999999998776433           12599999988763

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.49  E-value=0.00048  Score=53.62  Aligned_cols=47  Identities=32%  Similarity=0.589  Sum_probs=1.3

Q ss_pred             CCCCCcccccCcc------------------ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          299 TCPDPCVVCLERK------------------CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       299 ~~~d~C~vC~~~~------------------~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      ...|.|.||++..                  |.++..+|||.|+..|........            ..||+||...
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~------------~~CP~Cr~~~  110 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW  110 (117)
T ss_dssp             CCC--------------------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC------------CcCCCCCCee
Confidence            3457899998643                  233445899999999986654332            3499999873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.47  E-value=0.005  Score=55.96  Aligned_cols=49  Identities=6%  Similarity=-0.168  Sum_probs=38.7

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.||++-...-+..+|||.+|..|........           ...||+||.++..-
T Consensus       208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-----------~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQE  256 (281)
T ss_dssp             TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGG
T ss_pred             ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-----------CCCCcCCCCCCchh
Confidence            34699999988888889999999999997776443           12399999888643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=96.45  E-value=0.0044  Score=45.30  Aligned_cols=47  Identities=6%  Similarity=-0.168  Sum_probs=37.8

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .-.|.+|++-...-+..+|||.+|..|........            ..||+||..+..
T Consensus        14 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~   60 (85)
T 2kr4_A           14 EFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTE   60 (85)
T ss_dssp             TTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCG
T ss_pred             heECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCCh
Confidence            45699999987777888999999999998776532            349999987654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.40  E-value=0.005  Score=46.53  Aligned_cols=47  Identities=9%  Similarity=-0.147  Sum_probs=37.7

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .-.|.+|++-...-+..+|||.+|..|.......            ...||+||..+..
T Consensus        29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------------~~~cP~~~~~l~~   75 (100)
T 2kre_A           29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN------------SPTDPFNRQTLTE   75 (100)
T ss_dssp             TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS------------CSBCSSSCCBCCT
T ss_pred             hhCCcCccCcccCCeECCCCCEEchHHHHHHHHc------------CCCCCCCCCCCCh
Confidence            4569999998877788899999999999777542            1359999988764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.26  E-value=0.0048  Score=45.61  Aligned_cols=39  Identities=23%  Similarity=0.573  Sum_probs=30.9

Q ss_pred             EEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccC
Q 014696          315 AAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLP  364 (420)
Q Consensus       315 ~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  364 (420)
                      -.+||+|.+|-.|+.......           ...||.||.+|.++...|
T Consensus        16 RmIPCkHvFCydCa~~~~~~~-----------~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A           16 RMIPCKHVFCYDCAILHEKKG-----------DKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             EEETTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCSEEEEEE
T ss_pred             eeccccccHHHHHHHHHHhcc-----------CCCCcCcCCeeeeeEEec
Confidence            668999999999997765333           345999999999986653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.07  E-value=0.0084  Score=45.09  Aligned_cols=47  Identities=6%  Similarity=-0.092  Sum_probs=37.7

Q ss_pred             CCCcccccCccceEEEeCCC-cccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCD-HEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cg-H~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      +-.|.||++-...-+..+|| |.+|..|........            ..||+||..+..
T Consensus        22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~------------~~cP~~~~~l~~   69 (98)
T 1wgm_A           22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD------------QTDPFNRSPLTM   69 (98)
T ss_dssp             TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS------------CBCTTTCSBCCT
T ss_pred             hcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC------------CCCCCCCCCCCh
Confidence            45699999988777888999 999999997775431            259999988764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.0058  Score=54.08  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             CCCcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCC--Ccccccc
Q 014696          301 PDPCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPL--CRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~--CR~~I~~  359 (420)
                      .-.|.+|++....-+.. .|||.+|..|........          +...||+  ||..+..
T Consensus       181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----------~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----------TTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----------SCEECSGGGCSCEECG
T ss_pred             eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----------CCCCCCcccccCcCch
Confidence            34599999988777764 999999999998876432          2356999  9987643

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=95.38  E-value=0.012  Score=49.27  Aligned_cols=49  Identities=8%  Similarity=-0.126  Sum_probs=38.0

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.+|++-...-+..+|||.+|..|........          +. .||+||..+..-
T Consensus       106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~-tcP~t~~~l~~~  154 (179)
T 2f42_A          106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GH-FDPVTRSPLTQD  154 (179)
T ss_dssp             GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CS-BCTTTCCBCCGG
T ss_pred             hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CC-CCCCCcCCCChh
Confidence            44689999877777888999999999998776543          11 499999877543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.67  E-value=0.05  Score=38.32  Aligned_cols=56  Identities=14%  Similarity=0.346  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCcccccCccc-eEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          293 NSDSLSTCPDPCVVCLERKC-TVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       293 ~~~~~~~~~d~C~vC~~~~~-~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      ....+....+.|.||.+-.- .+....|+|.+-..|......+.          ....||+||+...
T Consensus         7 ~~~~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~----------~~~~CP~Cr~~w~   63 (74)
T 2ct0_A            7 GRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN----------AEPRCPHCNDYWP   63 (74)
T ss_dssp             CCCCCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC----------SSCCCTTTCSCCC
T ss_pred             chhhccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc----------CCCCCCCCcCcCC
Confidence            33445566788999986331 11233799999999997776433          1245999997765

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.59  E-value=0.048  Score=40.49  Aligned_cols=50  Identities=16%  Similarity=0.337  Sum_probs=36.8

Q ss_pred             CCCcccccCccceEEEeC-CCcccchhhHHHHhhcCCCcccccCCCCCCCCCC--Cccc
Q 014696          301 PDPCVVCLERKCTVAAKG-CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPL--CRHG  356 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~-cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~--CR~~  356 (420)
                      .-.|.||++-...-+..+ |||.+|..|...+.....      +..+...||+  |+..
T Consensus         7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~------~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ------KRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH------TTTCCBCCCSTTCCCC
T ss_pred             EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc------CcCCCCCCCcCcCccc
Confidence            446999998777778885 999999999988775431      0112456999  9866

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=92.25  E-value=0.073  Score=48.87  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             CCCCcccccCccce------EEE--eCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKCT------VAA--KGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~~------v~~--~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      ....|.||++..-.      ..+  ..|||.+...|......+....-++ -......||+||++|.
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqS-Fnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTF-LEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCT-TTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcccc-ccccCCCCCCCCCcCC
Confidence            45679999964433      222  2699999999987765432100000 0011234999999875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=89.11  E-value=0.22  Score=33.41  Aligned_cols=48  Identities=15%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             CCCCcccccCccceEEEeCCCc-----ccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          300 CPDPCVVCLERKCTVAAKGCDH-----EFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~cgH-----~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      +.+.|.||++..-.-...||.+     .+-..|+.......          +...||+||...
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~----------~~~~C~~C~~~~   57 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS----------RNTACQICGVVY   57 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH----------TCSBCTTTCCBC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC----------CCCccCCCCCee
Confidence            4567999986533323467543     46667777766443          235699999765

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=84.33  E-value=0.79  Score=30.70  Aligned_cols=46  Identities=7%  Similarity=-0.024  Sum_probs=34.3

Q ss_pred             CcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          303 PCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .|.+|++-.-.-+.. ++||.++..|....-....            .||++|..+..-
T Consensus         5 ~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~------------~cP~t~~~L~~~   51 (61)
T 2bay_A            5 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIE   51 (61)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGG
T ss_pred             EecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC------------CCcCCcCCCChh
Confidence            577777766666666 8999999999988764331            299999877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 1e-34
 Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH ++  GH  IV  L++ G   N+ N + +T L  A + GH EV   L+  KA ++  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH-- 171
              +  T LH AA  GH+  ++LLL +                                 
Sbjct: 63  AK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 172 -----------LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA 220
                         L      G V   +LLL+  A  +        G T LH A    N 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNL 178

Query: 221 QCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
              ++L+  G S  +   NG+TPL +A   ++  +   L
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 4e-26
 Identities = 63/270 (23%), Positives = 98/270 (36%), Gaps = 53/270 (19%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           L  AA+ G ++ A+ LLE +         G   +PLH +    + +IV LL+  G   + 
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
             + G T L  A +    EV  +L+ Y  + +      G T LHLAA  GH+  +     
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVA---- 248

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSE 199
             +     A   L  KS  T               L  +   GHV    +L+  G  V  
Sbjct: 249 --LLLSKQANGNLGNKSGLT--------------PLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 200 YLS------------------------------VSGAGSTSLHYAACGGNAQCCQILIAM 229
                                             +  G + LH AA  G+     +L+  
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 230 GASLTAENANGWTPLMVARSWHRTGLEDIL 259
           GAS    +++G TPL +A+      + D+L
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 2e-19
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PLH +A  G   +  LL+E     N     G T L  A  H + ++V  L+    + H  
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 114 DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNR-----LRKKSNKTGSILEFDER 168
            + NG T LH+AA        R LL     +   +        L  +      +     +
Sbjct: 195 AW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 253

Query: 169 YFHLEV--------LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNA 220
             +  +        L  +   GHV    +L+  G  V     +     T LH A+  GN 
Sbjct: 254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY---TPLHVASHYGNI 310

Query: 221 QCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           +  + L+   A + A+   G++PL  A     T +  +L
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 7e-17
 Identities = 60/284 (21%), Positives = 97/284 (34%), Gaps = 63/284 (22%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
           N    +     L  AAR G  + AK LL+   ++   +      +PLH +A  GH  +V 
Sbjct: 30  NVKVETP----LHMAARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVK 83

Query: 69  LLIES---------------------------------GVDINLRNYRGQTALMQACQHG 95
           LL+E+                                          +G T L  A ++G
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 96  HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKK 155
              V   L+   A+ + A   NG T LH+A  + +   ++LL                  
Sbjct: 144 KVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLL--------LPRGGSPHSP 194

Query: 156 SNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAA 215
           +    + L    +   +EV   L   G                   + S  G T LH AA
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGG---------------SANAESVQGVTPLHLAA 239

Query: 216 CGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
             G+A+   +L++  A+    N +G TPL +        + D+L
Sbjct: 240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
           +GN  G +     L   A++G +  A  L+++   +   +      +PLH ++  G+ ++
Sbjct: 259 LGNKSGLTP----LHLVAQEGHVPVADVLIKHGVMVDATTRM--GYTPLHVASHYGNIKL 312

Query: 67  VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
           V  L++   D+N +   G + L QA Q GH ++V  L+   A+ +     +G T L +A 
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-DGTTPLAIAK 371

Query: 127 LNGHSRCIRLLLA 139
             G+     +L  
Sbjct: 372 RLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 2e-14
 Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 51/192 (26%)

Query: 86  TALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSV 145
           T L  A   GH  +V  L+   A+ + ++     T LH+AA  GH+   + LL +     
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQN----- 55

Query: 146 PNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS--- 202
             A    + K ++T               L      GH   V+LLL+  A+ +   +   
Sbjct: 56  -KAKVNAKAKDDQT--------------PLHCAARIGHTNMVKLLLENNANPNLATTAGH 100

Query: 203 ---------------------------VSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
                                      ++  G T LH AA  G  +  ++L+   A   A
Sbjct: 101 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160

Query: 236 ENANGWTPLMVA 247
              NG TPL VA
Sbjct: 161 AGKNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 6e-13
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
            SPLH +A QGH +IV+LL+++G   N  +  G T L  A + G+  V   L +     
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 389

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.4 bits (246), Expect = 4e-24
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 14/201 (6%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH----WEVVLTLILYK 107
           N+PLH+  +  + E+V  L++ G +    +  G++ L++A +  +          L    
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
             +   D     T LH   +             Y+  +     + + +  ++G+  +   
Sbjct: 168 PCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK--- 223

Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQIL 226
                E   +       +S+   LDL   ++  L+   + G T L+ AA  GN      L
Sbjct: 224 -----ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 227 IAMGASLTAENANGWTPLMVA 247
           +  GA     N +G  P+   
Sbjct: 279 LDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 7e-09
 Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 35/228 (15%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYR-GQTALMQACQHGHWEVVLTLILYKANIH 111
           + L         E+ + L     + N       Q     +      EV       + N++
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL-------------------ADYIPSVPNAWN-- 150
                +G T LH      +   ++ L+                   A    +  ++    
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 151 --------RLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
                    L  + +   +IL        +              +  ++       +  S
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ--S 218

Query: 203 VSGAGSTSLHYAACGGNAQCCQILI---AMGASLTAENANGWTPLMVA 247
            +    +  +           + L     +   L A+++NG T L +A
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
           G+T LH+     N +  + L+  G++    +  G + L+ A    
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 90.9 bits (224), Expect = 3e-21
 Identities = 57/288 (19%), Positives = 96/288 (33%), Gaps = 49/288 (17%)

Query: 21  VSAARDGDLQEAKALLEY----NPRLVRYSTFGVR---NSPLHYSAAQGHHEIVSLLIES 73
           ++ A+    ++ K  +       P +V+     V+    +    + + G  E V  L+E 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 74  GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRC 133
           G DIN  N  G TAL QAC   + ++V  L+   ANI++ D          A+       
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122

Query: 134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE-------------------- 173
             L+         N+         +  ++ E  +   + +                    
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 174 -------------------VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYA 214
                               L      G+ E ++LL+     V+        G T LH A
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGWTPLHAA 239

Query: 215 ACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
           A  G  + C+IL+     + A N  G T   VA       LE++   Q
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 4e-21
 Identities = 51/242 (21%), Positives = 72/242 (29%), Gaps = 41/242 (16%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVD---INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
           ++ LH +    H   +  L+        ++L+N  GQTAL  A   G    V  L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
            +  A+   G TALHLA       C  +LL        +A +    +S       +    
Sbjct: 70  GVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ------DCTPD 122

Query: 169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSE----------------------------- 199
             H    +    N   E      D    +                               
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 200 --YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLED 257
                    G T LH A     A   ++L+  GA  TA    G TPL  A       L  
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 258 IL 259
           +L
Sbjct: 243 LL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 36/170 (21%), Positives = 56/170 (32%), Gaps = 11/170 (6%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLN--GGTALHLAALNGHSRCIRLLLADY 141
           G TAL  A  H H   +  L+ + A     D  N  G TALHLAA+ G +  +       
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE-----K 63

Query: 142 IPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYL 201
           + +         +  +    +      +    VLL    +   ++    L      +   
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
           S + A       +      +           L AEN +G TPL VA    
Sbjct: 124 SHAPA----AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 6e-11
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
            +PLH +       ++ LL+++G D   R Y G+T L  A    +  +   L  + A
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 21/119 (17%), Positives = 31/119 (26%), Gaps = 35/119 (29%)

Query: 55  LHYSAAQGHHEIVSLLIESGVDINLRNYRG------------------------------ 84
              S     +E      +  + +   NY G                              
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 85  ----QTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
               +T L  A +     V+  L+   A+     Y  G T L  A L  +    RLL A
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRA 246

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 5e-21
 Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 62/283 (21%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI-------- 71
           L+ A ++ D+   + LLE     V +       +PLH +      +IV LL+        
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 72  -------------------------ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
                                      G D+N  ++ G TA M+A  +G  + +  L   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 107 KANIHRADY---------LNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSN 157
            AN++               G TAL  AA  GH   +++LL D + +  NA +       
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-DEMGADVNACDN------ 180

Query: 158 KTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG 217
                     R   +  LL    +       LLLD GA V+        G T L  A   
Sbjct: 181 --------MGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEK 229

Query: 218 GNAQCCQILIAM-GASLTAENANGWTPLMVARSWHRTGLEDIL 259
            +    Q L+      +   +++G T L++A       + ++L
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 8e-19
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLR-NYRGQTALMQACQHGHWEVVLTLILYKANI 110
           N  L  +      ++V  L+E G ++N +    G T L  A Q    ++V  L+L     
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-LLLRHGAD 64

Query: 111 HRADYLNGGTALHLAALNGHSRCI-------------------RLLLADYIPSVPNAWNR 151
                 NG T   LAA+ G  + +                     + A     V      
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 152 LRKKSNKTGSILEFDERYFHLE----VLLHLTLNGHVESVQLLLD-LGASVSEYLSVSGA 206
            ++ +N        +++    +     L+     GHVE +++LLD +GA V+   ++   
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 207 GSTSLHYAACGGNA-QCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
                  ++   +      +L+  GA +      G TPL++A      GL   L
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 5e-18
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 20  LVSAARDGDLQEAKALLEY---NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
           L+ AA  G ++  K LL+    +               L  S       I  LL++ G D
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 77  INLRNYRGQTALMQACQHGHWEVVLTLILYK-ANIHRADYLNGGTALHLAALNGHSRCIR 135
           +N+R  RG+T L+ A +  H  +V  L+  +   I+  D  +G TAL LA      +   
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVELKLKKIAE 270

Query: 136 LLL 138
           LL 
Sbjct: 271 LLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 3e-15
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 27/152 (17%)

Query: 52  NSPLHYSAAQGHHEIVSLLI-ESGVDINLRNYRGQTALMQAC----QHGHWEVVLTLILY 106
            + L  +A +GH E++ +L+ E G D+N  +  G+ AL+ A           +   L+ +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 107 KANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD 166
            A+++      G T L LA    H   ++ LL        +          KT       
Sbjct: 209 GADVNVRGE-RGKTPLILAVEKKHLGLVQRLL-----EQEHIEINDTDSDGKT------- 255

Query: 167 ERYFHLEVLLHL-TLNGHVESVQLLLDLGASV 197
                    L L       +  +LL   GAS 
Sbjct: 256 --------ALLLAVELKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 6e-13
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 52  NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
            +PL  +  + H  +V  L+E   ++IN  +  G+TAL+ A +    ++   L    A+ 
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 111 HRADYL 116
              D +
Sbjct: 280 DCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 8e-13
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 21/190 (11%)

Query: 84  GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
               L++A Q+   ++V  L+   AN++  +   G T LH A        + LLL     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLE-------------VLLHLTLNGHVESVQLL 190
            V    N          +      + F  +               +   + G V++++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 191 LDLGASVS-------EYLSVSGAGSTSLHYAACGGNAQCCQILIA-MGASLTAENANGWT 242
              GA+V+       +   +   G+T+L  AA  G+ +  +IL+  MGA + A +  G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 243 PLMVARSWHR 252
            L+ A     
Sbjct: 185 ALIHALLSSD 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.3 bits (223), Expect = 1e-20
 Identities = 30/234 (12%), Positives = 55/234 (23%), Gaps = 38/234 (16%)

Query: 52  NSPLHYSAAQGHH---EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
                 +A  G     + + LL+ S   + +       A   A ++GH  V+  L     
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 109 NIHRADYLNGG-TALHLAALNGHSRCIRLLLA-------DYIPSVPNAWNRLRKKSNKTG 160
               A        A  LAA NGH   +  L           I +      R         
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 161 SILEF--DERYFHLEVLLHLTLNGHVESVQLLLDLG------------ASVSEYLSVSGA 206
           +++ F  D         +H    G       +                ++      +   
Sbjct: 211 NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 270

Query: 207 --------GSTSLHYAACGGNAQCCQILIAMGASLTAENAN-----GWTPLMVA 247
                      +L            + L+++                   L +A
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.9 bits (209), Expect = 8e-19
 Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 9   NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVS 68
            +    A       AA +G L     L E  P  +              +A  GH  +++
Sbjct: 123 QAENYQA----FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 69  LLIESGVDIN---LRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
            L E         ++          A   GH  V+  L+     +          A    
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--------YAEIHE 230

Query: 126 ALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER---YFHLEVLLHLTLNG 182
              G       +                   +    ++   E    ++ L  L+      
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 290

Query: 183 HVESVQLLLDLGASV--SEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
            ++ ++ LL +      +   ++ G  +  L  A   GN   C +L+++ + L 
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.2 bits (202), Expect = 7e-18
 Identities = 22/217 (10%), Positives = 53/217 (24%), Gaps = 29/217 (13%)

Query: 63  HHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEV---VLTLILYKANIHRADYLNGG 119
           +        +   D + +  + +     A   G       +  L+     +         
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENY 127

Query: 120 TALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLT 179
            A  LAA NGH   +  L                       + +    +  +        
Sbjct: 128 QAFRLAAENGHLHVLNRLC------------------ELAPTEIMAMIQAENYHAFRLAA 169

Query: 180 LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN 239
            NGH+  +  L +L  + +  +  +         A   G+      L+            
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-------VM 222

Query: 240 GWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLA 276
                +    +    +   ++       E+  +  L+
Sbjct: 223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 259

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 3e-18
 Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
           + + A  G L+E K  +  +  L    T     + LH++ + GH EIV  L++ GV +N 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
           ++  G + L  A   G  E+V  L+   A ++  +  NG T LH AA         +LL 
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLL- 123

Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSE 199
                          K +   + +       +L+++  L       ++Q           
Sbjct: 124 -------EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ----------- 165

Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
                  G+T LH A      +  ++L++ GAS+  EN    TPL VA+      L+ ++
Sbjct: 166 ----DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 6e-14
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 28/144 (19%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            +PLHY+A++  HEI  +L+E G + + +++   TA+ +A   G+ +++  L+ YKA+ +
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNAWNRLRKKSNKTGSILEFDER 168
             D   G T LHLA         +LL+   A          N    K  KT         
Sbjct: 164 IQDT-EGNTPLHLACDEERVEEAKLLVSQGAS-----IYIEN----KEEKT--------- 204

Query: 169 YFHLEVLLHLTLNGHVESVQLLLD 192
                  L +   G    ++ +++
Sbjct: 205 ------PLQVAKGGLGLILKRMVE 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 2e-16
 Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 23/227 (10%)

Query: 52  NSPLHYSAAQGHHEIVSLLI----ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
           ++PLH +  QG+   V  L+    + G ++++ N   QT L  A       VV  L+   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TA 62

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
                A   +G TA HLA  +    C+R LL    P   +   R           +  + 
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVS-------EYLSVSGA--------GSTSLH 212
           +     +L        V+       L  +V        + L   GA        GS++LH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 213 YAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
            A+  G     + L+  GA  + +N +  TPLMVARS     + DIL
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR---RVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-11
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 19  RLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
            L+ A  +  L   + LL++   +      G  +S LH ++ +G   +V  L+ SG D +
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSG--SSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 79  LRNYRGQTALMQACQHGHWEVV 100
           L+N    T LM A      +++
Sbjct: 205 LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 6e-10
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
           PL ++       +V LL++ G ++N + Y G +AL  A   G   +V TL+   A+    
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 114 DYLNGGTALHLAALNGHSRCIR 135
           +  +  T L +A        +R
Sbjct: 207 NC-HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 9e-06
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 207 GSTSLHYAACGGNAQCCQILIAM----GASLTAENANGWTPLMVARSWH 251
           G T LH A   GN      L+ +    G  L   N    TPL +A    
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT 51

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 20/195 (10%)

Query: 84  GQTALMQACQHGHWEVVLTLILY----KANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
           G T L  A   G+   V  L+         +   +     T LHLA +      +RLL+ 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVT 61

Query: 140 DYIPSVPNAWNRL------RKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
                +    +         +  + T      D        L     +G       +   
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 194 GASVSEYLSVSGA---------GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
                + L   GA         G + L +A    +    Q+L+  GA++ A+  +G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 245 MVARSWHRTGLEDIL 259
             A       L   L
Sbjct: 182 HSASGRGLLPLVRTL 196

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (179), Expect = 1e-15
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 21/212 (9%)

Query: 52  NSPLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
           +S LH +          E++  +      +N +N   QT L  A      E+   L+   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE 167
            +                          L LA     + +     +  +      +    
Sbjct: 63  CDPEL---------------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 107

Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
            Y     L   +++G++  V+LL+ LGA V+     +G   T+LH A    N     +L+
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG--RTALHLAVDLQNPDLVSLLL 165

Query: 228 AMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
             GA +      G++P  +      T ++  L
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDI-NLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
            LH ++  G+  IV LL+  G D+       G+TAL  A    + ++V  L+   A+++R
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL---ADYIPSVPNA 148
             Y  G +   L      +R  + L     + +  +P +
Sbjct: 174 VTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
            + LH +    + ++VSLL++ G D+N   Y+G +            +   L      
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 7e-06
 Identities = 19/153 (12%), Positives = 32/153 (20%), Gaps = 4/153 (2%)

Query: 207 GSTSLHYAACGGNAQCC----QILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
           G + LH A             + +    A L  +N    TPL +A   ++  + + L   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 263 PEGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCVVCLERKCTVAAKGCDHE 322
                         L L          G       +      +                 
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 323 FCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRH 355
                   L S  +     +   G     L   
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 154

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.1 bits (175), Expect = 8e-15
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 36/242 (14%)

Query: 52  NSPLHYSAAQGHHEIVSLL--------IESGVDINLRNYRGQTALMQACQHGHWEVVLTL 103
            + LH+ A+    E    L        I +G D+N  +    T LM A       +V  L
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 104 ILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSIL 163
           +   A+    +          AA       + +L +  +       +R    +    +  
Sbjct: 94  MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 153

Query: 164 EFDERYFHLEV--------------------------LLHLTLNGHVESVQLLLDLGASV 197
           E  ++    ++                          L +     ++  V+ L+    S 
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 213

Query: 198 SEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLED 257
            +       G T +  AA  G  +    LI  GAS+ A +A   T   +A++ +   + D
Sbjct: 214 KDK--QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 258 IL 259
           I 
Sbjct: 272 IF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
            +P+  +A +G  E+V  LI+ G  +   +    TA   A  + H  +V      +
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 52  NSPLHYSAAQGHHEIVSLLIE-SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
            + LHY+A   +  IV  L+   G + + ++  G+T +M A Q G  EVV+ LI   A++
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLL 138
              D     TA  LA  N H   + +  
Sbjct: 248 EAVDA-TDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 5e-11
 Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 53  SPLH-YSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK---- 107
           SP+  ++ A G + I   +    V+I    +  +T L     +   E    LI+++    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 108 ----ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSIL 163
               A+++  D  +  T L LA L              +  +  A       +    S L
Sbjct: 61  IAAGADVNAMDC-DENTPLMLAVLARR--------RRLVAYLMKAGADPTIYNKSERSAL 111

Query: 164 EFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
                     +++++  +  ++     LD     +  +            +A     +  
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH-NEGRDQVASAKLLVEKGA 170

Query: 224 QILIAMGASLTAENANGWTPLMVARSWHRT 253
           ++     A   +E   G T L  A      
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNM 200

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 19/216 (8%)

Query: 52  NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
           N PLH +  +     V  L+ S    +  ++  G+  L  +      E+   L+    N+
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILE------ 164
           +  DY +                  +      P  P+      +        +       
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 165 ----------FDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYA 214
                        +    ++ LH   +     +  LL  G   S        G T L +A
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC-GLGKSAVNWQDKQGWTPLFHA 179

Query: 215 ACGGNAQCCQILI-AMGASLTAENANGWTPLMVARS 249
              G+     +L+   GA     +  G     VA +
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 20/169 (11%)

Query: 86  TALMQACQHGHWEVVLTLILYK-ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPS 144
             L QAC    +  V  L+  K + + + D  +G   LH +           LL+     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 145 VPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVS 204
             + +      +    +    +           L  + +  + Q                
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ---------------- 104

Query: 205 GAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRT 253
             G T LH A      +  Q LI  GAS+  ++     PL  A S    
Sbjct: 105 --GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 151

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.8 bits (156), Expect = 9e-13
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 11/206 (5%)

Query: 65  EIVSLLIESGVDINLR-NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALH 123
           +++S L+  G ++N   +  G+T+L  A +    +    L+   A+ +  D         
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 124 LAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV--------- 174
             A +       LL            +            +E                   
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 175 -LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
               L     V + + +  L    +   +      T L  AA  G+ +  + L+   A+ 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 234 TAENANGWTPLMVARSWHRTGLEDIL 259
              +     P  VA       +  +L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.8 bits (143), Expect = 4e-11
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
            + LH++AA  + E V++L+    + + ++ + +T L  A + G +E    L+   AN  
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 183

Query: 112 RADYLNGGTALHLAALNGHSRCIRLL 137
             D+        +A+   H   +RLL
Sbjct: 184 ITDH-MDRLPRDVASERLHHDIVRLL 208

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 19  RLVSAARDGDLQEAKALLEY----NPRLVRYSTFGVRNSPLHYSAA---QGHHEIVSLLI 71
            L  A +  D+               ++   +      + LH +     +    IV  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 72  ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS 131
           ++  +++ +  +G TAL   C   + E +  L+  KA+I  A+  +G T L +A    H 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHE 127

Query: 132 RCIRLLL 138
            C  LL 
Sbjct: 128 HCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 18/151 (11%), Positives = 37/151 (24%), Gaps = 30/151 (19%)

Query: 54  PLHYSAAQGHHEIVSLLIESGVDINLR------NYRGQTALMQACQ---HGHWEVVLTLI 104
            L  +        +      GVD+  +      +   +TAL  A +        +V  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILE 164
               N+ +          +    +             +     A   +  +S +T     
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECL-------KLLLRGKASIEIANESGET----- 116

Query: 165 FDERYFHLEVLLHLTLNGHVESVQLLLDLGA 195
                     L       H    +LL    +
Sbjct: 117 ---------PLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 32/174 (18%)

Query: 81  NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYL-----NGGTALHLAALNGHSRCIR 135
                 +L +A +      +L       ++     L        TALHLA  +     + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 136 L--LLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
           +   L     ++     +     +        +     L     + +             
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE---------- 112

Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN---GWTPL 244
                       +G T L  A    +  C ++L    +     + +    W  L
Sbjct: 113 ------------SGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 17  GERLVSAARDGDLQEAKALLE------------------------------YNPRLVRYS 46
           G++L+ AAR G   E + L+                                   + R +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 47  TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
              V  +PLH +A++GH  IV +L++ G D+N ++    TAL  A +H H EVV  LI Y
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 107 KANIHRADYLNGGTALHLAALNGHSRCIRLL 137
            A++H        TA  ++  NG+     +L
Sbjct: 123 GADVHTQSK-FCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 9/152 (5%)

Query: 117 NGGTALHLAALNGHSRCIRLLLADYIP-SVPNAWNRLRKKSNKTGSILEFDERYFHLEVL 175
           + G  L  AA  G    +R+L+A+  P +           + + G     +         
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGA--------GSTSLHYAACGGNAQCCQILI 227
              T            +  A++ E L   GA          T+LH+A    + +  ++LI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 228 AMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
             GA +  ++    T   ++       L +IL
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 25/175 (14%)

Query: 52  NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
              L  +A  G  + V +L+ +G      ++ G + L  A Q+GH+            + 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFS-------TTEVLL 54

Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFH 171
           RA                 +          +     A                  +    
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV--------------NAKDMLK 100

Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
           +  L   T + H E V+LL+  GA V      S    T+   +   GN    +IL
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHT---QSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 33/154 (21%)

Query: 16  SGERLVSAARDGDLQEAKALLEYNPRLV-------------------------------R 44
           +G+RL  AA  GD+QE + LL                                       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 45  YSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
                   SP+H +A  G  + + +L+E G D+N+ +  G   +  A Q GH  VV   +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-L 120

Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
             ++++HR D   G T L LA   G    + +L 
Sbjct: 121 AAESDLHRRDA-RGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 24/175 (13%), Positives = 44/175 (25%), Gaps = 27/175 (15%)

Query: 54  PLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
            L  +AA+G  + V  L+    V  +  N  G+TAL           +  L    +   +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
                             +  + +     +                       +      
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-----------------------NVPDGTG 101

Query: 173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
            + +HL +     +V   L   + +         G T L  A   G      IL 
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 34/152 (22%), Positives = 48/152 (31%), Gaps = 11/152 (7%)

Query: 118 GGTALHLAALNGHSRCIRLLLADYI--PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL 175
            G  L  AA  G  + +R LL   +  P   N + +   +    GS     E        
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGA--------GSTSLHYAACGGNAQCCQILI 227
                +G                + L   GA        G+  +H A   G+      L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 228 AMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
           A  + L   +A G TPL +A       L DIL
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-08
 Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 24/178 (13%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
           + L  +AA+G  E ++ L+++ V++N +N  G+TAL              L+       +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
                        A    +    L     +    N  N     + K G +   +    H 
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG 230
              +    +                         G T+   A   G  +   ++ A G
Sbjct: 123 ASNVGHRNH------------------------KGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 30/153 (19%)

Query: 17  GERLVSAARDGDLQEAKALLEYN------------------------------PRLVRYS 46
           G  L SAA  GDL++  +LL+ N                                     
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 47  TFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
                 + +H +A  G  + +  L+E   D+N+ +  G   L  A + GH  VV  L+ +
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 107 KANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
            A+        G TA  LA L G +  + L+ A
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 10/151 (6%)

Query: 119 GTALHLAALNGHSRCIRLLLA----------DYIPSVPNAWNRLRKKSNKTGSILEFDER 168
           G  L  AA  G    +  LL               ++        + + +        + 
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
                  +            L   L       +  +         A  G       ++  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 229 MGASLTAENANGWTPLMVARSWHRTGLEDIL 259
             +++   N  G T   +AR + R  +  ++
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-08
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 35/122 (28%)

Query: 53  SPLHYSAAQGHHEIVSLLIESGVDINLRNY------------------------------ 82
           + L  S+ +G  ++V  +I    D +L N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 83  ---RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL--AALNGHSRCIRLL 137
               G T L  A    + +V   L+   A +    Y +  TA         G+++C + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 138 LA 139
             
Sbjct: 123 YG 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 13/127 (10%)

Query: 120 TALHLAALNGHSRCIRLLLA-------------DYIPSVPNAWNRLRKKSNKTGSILEFD 166
             L  ++L G    ++ ++                + +   A +    K      +    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 167 ERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL 226
                   L       +V+  + L++ GA+V          +         G  QC Q L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 227 IAMGASL 233
             +   +
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 56  HYSAAQGHHEIVSLLIESGVDINLRNYR-GQTA--LMQACQHGHWEVVLTLILYKANI 110
           H +A+  + ++   L+ESG  +    Y   QTA    +  + G+ +    L   +  +
Sbjct: 72  HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-06
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 16  SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGV 75
           S + L +AA  G ++E +ALLE        +               G   +  LL+  G 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 76  DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIR 135
           + N  +    T  +       +   L ++             G   + LA   GH    R
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 136 LLLA 139
            L A
Sbjct: 120 YLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 14/121 (11%), Positives = 27/121 (22%), Gaps = 10/121 (8%)

Query: 118 GGTALHLAALNGHSRCIRLLLA----------DYIPSVPNAWNRLRKKSNKTGSILEFDE 167
               L  AA  G    +R LL                +        + +           
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
                 +   +        +  L+ L  + +        G   +  A   G+    + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 228 A 228
           A
Sbjct: 123 A 123

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 297 LSTCPDPCVVCLER-KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSI 348
           ++T  + C +CLE       A  C H FC  C       N +C + K P+ S+
Sbjct: 1   MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 11/61 (18%)

Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL 363
           C +C E    V  + C H  CT C      +               CP CR  I   + +
Sbjct: 26  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG-----------CPFCRCEIKGTEPI 74

Query: 364 P 364
            
Sbjct: 75  V 75

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 20  LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
            + A ++GDL E K  +     + R    G +         Q       LL  + ++   
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65

Query: 80  RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
           +++      + A   GH   V  L+   A+       +G TAL        ++ I+ LL
Sbjct: 66  KHHITPL--LSAVYEGHVSCVKLLLSKGADKTVKGP-DGLTALEAT----DNQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.32
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.06
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.97
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.97
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.81
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.8
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.64
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.44
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	97.41
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.17
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	96.97
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.97
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.92
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.56
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	92.72

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=269.50  Aligned_cols=220  Identities=26%  Similarity=0.310  Sum_probs=194.8

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      |.+.|+.+|..|+++.|+.+++..+... ...+..|+||||+|+..|+.+++++|++.+.+....+..+.++++.|+..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            4578999999999999999988775443 345566799999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL  175 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (420)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++++.....                    ....+.+++
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~--------------------~~~~~~t~L  140 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDA--------------------KDHYEATAM  140 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------------------CCTTSCCHH
T ss_pred             ccchhHHHhccCceeEeeCC-CCCchhhHHHHcCCHHHHHHHHHCCCCCCC--------------------cCCCCCccc
Confidence            99999999999999999986 999999999999999999999987543211                    112233455


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhH
Q 014696          176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGL  255 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i  255 (420)
                      ..++..++.+++++|++.|.+++   ..|..|.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+| +.|+.++
T Consensus       141 ~~a~~~~~~~~~~~L~~~~~~i~---~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i  216 (223)
T d1uoha_         141 HRAAAKGNLKMIHILLYYKASTN---IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLI  216 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSC---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHH
T ss_pred             hhhhhcCCcchhhhhccccceee---eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHH
Confidence            55699999999999999999999   7788999999999999999999999999999999999999999998 4799999


Q ss_pred             HHHhhh
Q 014696          256 EDILST  261 (420)
Q Consensus       256 ~~lL~~  261 (420)
                      +++|++
T Consensus       217 ~~~Ll~  222 (223)
T d1uoha_         217 LKRMVE  222 (223)
T ss_dssp             HHHHHC
T ss_pred             HhcccC
Confidence            999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-36  Score=276.34  Aligned_cols=212  Identities=26%  Similarity=0.304  Sum_probs=135.3

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHH
Q 014696           51 RNSPLHYSAAQGHHEIVSLLIESGVD---INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAAL  127 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll~~g~~---v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~  127 (420)
                      |+||||+|+.+|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~-~g~tpL~~A~~   87 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLACR   87 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccccc-ccchhhhhhhc
Confidence            34555555555555555555555444   334444555555555555555555555555555555443 45555555555


Q ss_pred             cCCHHHHHHHHHhcCCCChhhHH--------------------------HHhhhccCCCCchhcccccchhhHHHH-HHh
Q 014696          128 NGHSRCIRLLLADYIPSVPNAWN--------------------------RLRKKSNKTGSILEFDERYFHLEVLLH-LTL  180 (420)
Q Consensus       128 ~g~~~iv~~Ll~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~-aa~  180 (420)
                      .++.+++++|++...........                          ...............+..+..+.+++| |+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            55555555554332211100000                          000000011112223333444444555 599


Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhh
Q 014696          181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS  260 (420)
Q Consensus       181 ~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~  260 (420)
                      .++.+++++|++++++.+.  ..+..|.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+.+++.+++++|+
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~--~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNK--PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccccccccchhcccccccc--cccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999885  45678999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q 014696          261 TQPEG  265 (420)
Q Consensus       261 ~~~~~  265 (420)
                      ++|+.
T Consensus       246 ~~Ga~  250 (255)
T d1oy3d_         246 AHGAP  250 (255)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            99986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=279.36  Aligned_cols=265  Identities=26%  Similarity=0.281  Sum_probs=202.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ||||.||..|+.++|++|+++|++++..+  ..|+||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d--~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSS--SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            79999999999999999999998887654  4568999999999999999999999999999999999999999887766


Q ss_pred             HHHH------------------------------------------------------------------HHHHcCCCCC
Q 014696           98 EVVL------------------------------------------------------------------TLILYKANIH  111 (420)
Q Consensus        98 ~iv~------------------------------------------------------------------~Ll~~ga~~~  111 (420)
                      ++++                                                                  +|+++|++++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5544                                                                  5555566666


Q ss_pred             ccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhh--------H----------HHHhhhccCC------C-------
Q 014696          112 RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNA--------W----------NRLRKKSNKT------G-------  160 (420)
Q Consensus       112 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~--------~----------~~~~~~~~~~------~-------  160 (420)
                      ..+. .|.+|||+|+..|+.+++++|+.++.......        .          ..+.......      .       
T Consensus       160 ~~~~-~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         160 AAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             CCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCC-cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            6654 78889999999999999999988765432100        0          0000000000      0       


Q ss_pred             --------------Cchhccc-ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHH
Q 014696          161 --------------SILEFDE-RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQI  225 (420)
Q Consensus       161 --------------~~~~~~~-~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~  225 (420)
                                    .....+. ...+.+++..++..++.+++++|+++|++++   ..+..+.||||.|+..++.+++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~---~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---CCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccc---cccccccccchhhcccCcceeeee
Confidence                          0000011 1122334556689999999999999999998   667788999999999999999999


Q ss_pred             HHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCC
Q 014696          226 LIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNS  294 (420)
Q Consensus       226 Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~  294 (420)
                      +++.|+++|.+|.+|.||||+|+++|+.+++++|+++++..  ...+..|.+|++    +|.+.|+.++
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~--n~~d~~G~t~L~----~A~~~~~~~i  378 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP--NEVSSDGTTPLA----IAKRLGYISV  378 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS--CCCCSSSCCHHH----HHHHTTCHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHH----HHHHcCCHHH
Confidence            99999999999999999999999999999999999998762  235777887764    4555555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-34  Score=268.68  Aligned_cols=236  Identities=22%  Similarity=0.258  Sum_probs=193.1

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      .+++|+.|+..|++++|++|+++|++++..+.  .|.||||+|+..|+.++|++|+++|++.+..+..+.|||++|+..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~--~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANV--DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCC--CCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            45899999999999999999999998876554  4589999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHh-------hhccCCCCchhcccc
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLR-------KKSNKTGSILEFDER  168 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  168 (420)
                      +.+++++|+++|+..+..+. .+.+++++|+..++.++++.++...............       ...............
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             ccchhhcccccCcccccccc-cCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            99999999999999988886 8999999999999999999998754433211111000       000000001111222


Q ss_pred             cchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          169 YFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       169 ~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      ..+.+++..++..|+.+++++|+++|++++   .++..|+||||+|++.|+.++|++|+++|+|++.+|..|+||||+|+
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din---~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVN---IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CCCCChhhHHHHcCChhhhcccccceeccc---ccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            233445556699999999999999999998   77889999999999999999999999999999999999999999997


Q ss_pred             HcCchhHHHHhhh
Q 014696          249 SWHRTGLEDILST  261 (420)
Q Consensus       249 ~~g~~~i~~lL~~  261 (420)
                      +    +++++|.+
T Consensus       274 e----~~~~~L~~  282 (291)
T d1s70b_         274 E----DILGYLEE  282 (291)
T ss_dssp             S----GGGHHHHH
T ss_pred             H----HHHHHHHH
Confidence            5    56666544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.7e-35  Score=267.49  Aligned_cols=238  Identities=20%  Similarity=0.197  Sum_probs=180.3

Q ss_pred             HHHHHHHH-cCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHH--------HHcCCCCCCccCCCCCHH
Q 014696           18 ERLVSAAR-DGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLL--------IESGVDINLRNYRGQTAL   88 (420)
Q Consensus        18 ~~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~L--------l~~g~~v~~~d~~g~TpL   88 (420)
                      +||+.|++ .|+.++++.|.+.+.+..  +. ..|+||||+|+..|+.++|++|        ++.|+|+|.+|.+|+|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNII--DP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTC--CC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcC--CC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            46664444 456666666666554432  22 2478999999999999998877        467999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcC------C-----CChhhHH-------
Q 014696           89 MQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI------P-----SVPNAWN-------  150 (420)
Q Consensus        89 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~------~-----~~~~~~~-------  150 (420)
                      |+|+.+|+.++|++|+++|++++..+. .|.|||++|+..++.++++++.....      .     .......       
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccccccccccc-cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            999999999999999999999999886 89999999999999999998864311      0     0000000       


Q ss_pred             ---H---Hhhhcc--CCCCchhcccccch-hhHHHHHHhcCCHHHHHHHH-HcCCCcccccccCCCCccHHHHHHHcCCH
Q 014696          151 ---R---LRKKSN--KTGSILEFDERYFH-LEVLLHLTLNGHVESVQLLL-DLGASVSEYLSVSGAGSTSLHYAACGGNA  220 (420)
Q Consensus       151 ---~---~~~~~~--~~~~~~~~~~~~~~-~~~~l~aa~~g~~~~v~~Ll-~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~  220 (420)
                         .   ......  ........+..... .++++.++..++.+++++++ ..+.+.+   ..|..|.||||+|++.|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~---~~d~~g~tpL~~A~~~g~~  234 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD---KQDEDGKTPIMLAAQEGRI  234 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT---CCCTTCCCHHHHHHHHTCH
T ss_pred             ccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc---ccCCCCCCHHHHHHHcCCH
Confidence               0   000000  00111111222222 33455569999999998755 5677777   7788999999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          221 QCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       221 ~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      ++|++|+++|+|++.+|.+|+||||+|+++|+.+++++|.+.
T Consensus       235 ~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         235 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-33  Score=254.51  Aligned_cols=195  Identities=22%  Similarity=0.195  Sum_probs=165.6

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCccc-ccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVR-YSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQ   93 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~   93 (420)
                      .+.|+||.|++.|+.+++++|++++++... ...+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            567999999999999999999999877553 2345567999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCC-----------------------------------------------CCccccCCCChHHHHHH
Q 014696           94 HGHWEVVLTLILYKAN-----------------------------------------------IHRADYLNGGTALHLAA  126 (420)
Q Consensus        94 ~g~~~iv~~Ll~~ga~-----------------------------------------------~~~~~~~~g~tpL~~A~  126 (420)
                      .++.+++++|++.+..                                               ++.++ ..|.||||+|+
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~g~TpLh~A~  166 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAV  166 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TTSCCHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc-ccCcccccccc
Confidence            9999999999765432                                               12233 37999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCC
Q 014696          127 LNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA  206 (420)
Q Consensus       127 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~  206 (420)
                      ..|+.+++++|++.+....                   ......+.++++.|+..|+.+++++|+++|++++   .+|..
T Consensus       167 ~~~~~~~v~~Ll~~~~~~~-------------------~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin---~~d~~  224 (255)
T d1oy3d_         167 IHKDAEMVRLLRDAGADLN-------------------KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---ARMYG  224 (255)
T ss_dssp             HTTCHHHHHHHHHHTCCTT-------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTT
T ss_pred             cccccccccchhccccccc-------------------ccccccccccccccccccHHHHHHHHHHCCCCCC---CCCCC
Confidence            9999999999998743221                   1112233445556699999999999999999999   78899


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHhCCC
Q 014696          207 GSTSLHYAACGGNAQCCQILIAMGAS  232 (420)
Q Consensus       207 g~TpLh~Aa~~g~~~iv~~Ll~~gad  232 (420)
                      |.||||+|+..|+.+++++|+++||+
T Consensus       225 g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         225 GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-33  Score=247.74  Aligned_cols=221  Identities=24%  Similarity=0.258  Sum_probs=185.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC---ccCCCCCHHHHHHHc
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL---RNYRGQTALMQACQH   94 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~---~d~~g~TpL~~A~~~   94 (420)
                      +|||+||..|+.+.|+.|++..+... ...+..|+||||+|+..|+.+++++|+++|++++.   .+..|.||+|+|+..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            69999999999999999999765432 23445679999999999999999999999999864   567799999999999


Q ss_pred             CcHHHHHHHHHcCCCCCcc-ccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhh
Q 014696           95 GHWEVVLTLILYKANIHRA-DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLE  173 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
                      +..++++.++..+...... ....+.|+++.++..++.+++++|++.+....                    .....+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~g~t  140 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--------------------IKDKFNQI  140 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------------CCCTTSCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--------------------ccCCCCCC
Confidence            9999999999988755432 22378999999999999999999997643221                    11122334


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC-CCcccccccCCCCccHHHHHHHcCCHHHHHHHHH-hCCCccccccCCCCHHHHHHHcC
Q 014696          174 VLLHLTLNGHVESVQLLLDLG-ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA-MGASLTAENANGWTPLMVARSWH  251 (420)
Q Consensus       174 ~~l~aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g  251 (420)
                      ++..++..|+.+++++|++.| .+++   .++..|.||||+|+..|+.++|++|++ .|+|++.+|.+|+||||+|+.  
T Consensus       141 ~l~~a~~~~~~~~~~~Ll~~~~~~in---~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~--  215 (229)
T d1ixva_         141 PLHRAASVGSLKLIELLCGLGKSAVN---WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN--  215 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC--
T ss_pred             ccchhhhccccccccccccccccccc---ccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh--
Confidence            555569999999999999987 5667   678899999999999999999999997 599999999999999999984  


Q ss_pred             chhHHHHhhhCCCC
Q 014696          252 RTGLEDILSTQPEG  265 (420)
Q Consensus       252 ~~~i~~lL~~~~~~  265 (420)
                       .+++++|++++.+
T Consensus       216 -~~~~~~Ll~~g~d  228 (229)
T d1ixva_         216 -EQVKKFFLNNVVD  228 (229)
T ss_dssp             -HHHHHHHHHHCCC
T ss_pred             -HHHHHHHHHcCCC
Confidence             5799999998764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-31  Score=246.63  Aligned_cols=226  Identities=25%  Similarity=0.298  Sum_probs=174.6

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc--------------
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN--------------   81 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d--------------   81 (420)
                      +.+.|+.|++.||+++|++|+++|++++.... ..|.||||+|+..|+.+++++|++.+...+..+              
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~-~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCC-CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            35789999999999999999999999876544 347999999999999999999999877655444              


Q ss_pred             -------------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc---------CCCChHHHHHHHcCCHHH
Q 014696           82 -------------------YRGQTALMQACQHGHWEVVLTLILYKANIHRADY---------LNGGTALHLAALNGHSRC  133 (420)
Q Consensus        82 -------------------~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---------~~g~tpL~~A~~~g~~~i  133 (420)
                                         ..|.|+|++|+..++...++.++....+++....         ..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                               4445666666666666666666665555443221         257888888888888888


Q ss_pred             HHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHH---H-HhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          134 IRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLH---L-TLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       134 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~---a-a~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      +++|+++....                    .+..+ .+.....+   . ...+..+++++|+++|++++   .++..|.
T Consensus       164 ~~~Ll~~~~~~--------------------i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n---~~~~~g~  220 (285)
T d1wdya_         164 LKILLDEMGAD--------------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---VRGERGK  220 (285)
T ss_dssp             HHHHHHTSCCC--------------------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS---CCCTTSC
T ss_pred             HHHHHhccCCC--------------------cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC---ccCCCCC
Confidence            88888652111                    01111 11112222   2 33445679999999999998   6788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCC
Q 014696          209 TSLHYAACGGNAQCCQILIAM-GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEG  265 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~  265 (420)
                      ||||+|++.|+.++|++|+++ |++++.+|.+|.||||+|+++|+.+++++|+++|+.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            999999999999999999985 999999999999999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=248.66  Aligned_cols=205  Identities=23%  Similarity=0.277  Sum_probs=164.6

Q ss_pred             CCCcHHHHHHHcCcH----HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHH
Q 014696           50 VRNSPLHYSAAQGHH----EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA  125 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~----~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A  125 (420)
                      +|+||||+|+..|+.    ++++++...|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|.|||++|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~-~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccc-ccccccccc
Confidence            368999999999986    455566677899999999999999999999999999999999999998886 899999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCC
Q 014696          126 ALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSG  205 (420)
Q Consensus       126 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~  205 (420)
                      +..|+.++++.|++.+......              .........+.+++..++..++.+++++|+..|+.++.  ..+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~--~~~~  143 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLH--------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA--QEPC  143 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSS--------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTT
T ss_pred             cccccccccchhhhhccccccc--------------ccccccccccchhhhHHhhcCChhheeeecccCccccc--cccc
Confidence            9999999999998764322111              11111112233455556899999999999999999884  3456


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCC
Q 014696          206 AGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLP  271 (420)
Q Consensus       206 ~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~  271 (420)
                      .|.||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+++++.+++++|.+.........+
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~~  209 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP  209 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCC
T ss_pred             CCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccccccc
Confidence            799999999999999999999999999999999999999999999999999999988766544444

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=250.43  Aligned_cols=242  Identities=26%  Similarity=0.317  Sum_probs=170.7

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           15 ASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      .+.++|+.|+..++.+++++|++++.+++....+  |.+|||+|+..|+.+++++|+++|++++..+..|.||||++...
T Consensus       131 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~--~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~  208 (408)
T d1n11a_         131 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ  208 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS--CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCc--CchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhcc
Confidence            4456788888888888888888888777655443  47888888888888888888888888887777777776666666


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhh---HHHH----hhhccCC-----CCc
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNA---WNRL----RKKSNKT-----GSI  162 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~----~~~~~~~-----~~~  162 (420)
                      ...++...|+..+......+. .|.|||++|+..++.+++++++..........   ...+    .......     ...
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g  287 (408)
T d1n11a_         209 NQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG  287 (408)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             chhhhhhhhhhccccccccCC-CCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCC
Confidence            666666666665555554443 55566666666666666655554432211000   0000    0000000     000


Q ss_pred             hhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 014696          163 LEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       163 ~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~  241 (420)
                      ...+... ...+++..++..++.++++++++.|++++   .+|..|+||||+|++.|+.++|++|+++|||+|.+|.+|+
T Consensus       288 ~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in---~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~  364 (408)
T d1n11a_         288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT  364 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred             CccccccccccccchhhcccCcceeeeeecccccccc---ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            0111111 22344555699999999999999999999   7788999999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCchhHHHHhhhC
Q 014696          242 TPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       242 TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      ||||+|+++|+.+++++|..-
T Consensus       365 t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         365 TPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999987543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=230.33  Aligned_cols=204  Identities=25%  Similarity=0.233  Sum_probs=179.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHH-HcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcC
Q 014696           51 RNSPLHYSAAQGHHEIVSLLI-ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG  129 (420)
Q Consensus        51 g~t~Lh~Aa~~g~~~iv~~Ll-~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g  129 (420)
                      +++.|+.+|..|+.+.|+.++ +.+.+++.+|..|+||||+|+..|+.+++++|++.+.+....+. .+.++++.|+..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-TCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccc-ccccccccccccc
Confidence            468999999999999997666 46788999999999999999999999999999999998888876 8999999999999


Q ss_pred             CHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccccc-chhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          130 HSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY-FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       130 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      +.+++++|++++...                     +..+ .+.+++++|+..|+.+++++|+++|++++   ..+..|.
T Consensus        82 ~~~i~~~Ll~~~~d~---------------------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~---~~~~~~~  137 (223)
T d1uoha_          82 RDEIVKALLGKGAQV---------------------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEA  137 (223)
T ss_dssp             CHHHHHHHHHTTCCT---------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSC
T ss_pred             ccchhHHHhccCcee---------------------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC---CcCCCCC
Confidence            999999999875321                     1122 23445666699999999999999999998   7788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          209 TSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      ||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.++.  ....+..+.+|++.
T Consensus       138 t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad--~~~~d~~g~tpl~~  208 (223)
T d1uoha_         138 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS--IYIENKEEKTPLQV  208 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--SCCCCTTSCCHHHH
T ss_pred             ccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCC--CCCCCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999875  33467888888753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-30  Score=227.65  Aligned_cols=208  Identities=20%  Similarity=0.191  Sum_probs=174.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccc--cCCCChHHHHHHHc
Q 014696           52 NSPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD--YLNGGTALHLAALN  128 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~--~~~g~tpL~~A~~~  128 (420)
                      +||||+||.+|+.++|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+  +..|.+|+++|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999885 68899999999999999999999999999999999987442  23799999999999


Q ss_pred             CCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCc
Q 014696          129 GHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       129 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                      +..++++.++..+....                  .........+++..++..++.+++++|++.|.+.+   ..+..|.
T Consensus        81 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~g~  139 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPD------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR---IKDKFNQ  139 (229)
T ss_dssp             TCHHHHHHHHSSSSCCC------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---CCCTTSC
T ss_pred             ccccccccccccccccc------------------ccccccccccccccccccchhhhhhhhhhhccccc---ccCCCCC
Confidence            99999999886532211                  11112223334555689999999999999999988   6788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCHHHHHHHcCchhHHHHhhhC-CCCccccCCCCCCCchHHHH
Q 014696          209 TSLHYAACGGNAQCCQILIAMG-ASLTAENANGWTPLMVARSWHRTGLEDILSTQ-PEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~-~~~~~~~~~~~~~~~pl~~~  282 (420)
                      ||||+|+..|+.+++++|+++| .+++.+|.+|+||||+|+.+|+.+++++|+++ +.. ... .+..+.+|++.+
T Consensus       140 t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~-~d~~g~t~l~~A  213 (229)
T d1ixva_         140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDL-VDNKGAKAEDVA  213 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCC-CCTTSCCTGGGC
T ss_pred             CccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC-CCC-cCCCCCCHHHHH
Confidence            9999999999999999999997 78899999999999999999999999999975 544 333 467788888543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-30  Score=226.47  Aligned_cols=219  Identities=29%  Similarity=0.326  Sum_probs=175.2

Q ss_pred             CCCHHHHHHHHcCCHHHHHHHHH----hCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHH
Q 014696           15 ASGERLVSAARDGDLQEAKALLE----YNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQ   90 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~   90 (420)
                      .+.||||.|++.|+.++|+.|++    .+.+++..+  ..|+||||+|+..|+.+++++|+++|++++..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d--~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN--NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC--CCCCccceehhccccccccccccccccccccccccccccccc
Confidence            35688999999999998888875    556665544  455899999999999999999999998888888888899999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCC---ccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhccc
Q 014696           91 ACQHGHWEVVLTLILYKANIH---RADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDE  167 (420)
Q Consensus        91 A~~~g~~~iv~~Ll~~ga~~~---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (420)
                      |...++.++++.+........   ........++|+.+.........+.|......                   .....
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~  140 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------------------IDAVD  140 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------TTCCC
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccc-------------------ccccc
Confidence            998888888888776533221   11223677888888888888888887754221                   11112


Q ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       168 ~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      ...+..++..++..+...+++.+++.|.+.+   .++..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|
T Consensus       141 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNSLSMVQLLLQHGANVN---AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhhhhccccc---cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            2233455666799999999999999999998   7788999999999999999999999999999999999999999999


Q ss_pred             HHcCchhHHH
Q 014696          248 RSWHRTGLED  257 (420)
Q Consensus       248 ~~~g~~~i~~  257 (420)
                      +++|+.++++
T Consensus       218 ~~~~~~divk  227 (228)
T d1k1aa_         218 RSRRVIDILR  227 (228)
T ss_dssp             SSHHHHHHHT
T ss_pred             HhCCCccccC
Confidence            9999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=3.5e-30  Score=238.21  Aligned_cols=233  Identities=24%  Similarity=0.216  Sum_probs=179.0

Q ss_pred             HHcCCHHHHHHHHHhCCCcccccCCC-------CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           24 ARDGDLQEAKALLEYNPRLVRYSTFG-------VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        24 a~~g~~~~v~~Ll~~~~~~~~~~~~~-------~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      ++....+.++.++.............       .+.|+||.|+..|+.++|++|+++|+|+|.+|..|.||||+|+.+|+
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCC
Confidence            44445667777666554433222111       23499999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL  176 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  176 (420)
                      .++|++|+++|++....+. .+.+||++|+..++.++++.|++++.......                    ..+..++.
T Consensus        86 ~eiv~~Ll~~~~~~~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~~~  144 (291)
T d1s70b_          86 VDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVN--------------------SEGDTPLD  144 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------------TTSCCHHH
T ss_pred             ceeeeeecccccccccccc-cccccccccccccccchhhcccccCccccccc--------------------ccCccccc
Confidence            9999999999999888875 89999999999999999999998764332110                    01111122


Q ss_pred             HHHhcCCHHHHHHHHH---------------------------cCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHh
Q 014696          177 HLTLNGHVESVQLLLD---------------------------LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM  229 (420)
Q Consensus       177 ~aa~~g~~~~v~~Ll~---------------------------~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~  229 (420)
                      .|+..++.+.++.++.                           ...+..   ..+..|.||||+|+..|+.+++++|+++
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  221 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV---RHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC---CCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccc---cccCCCCChhhHHHHcCChhhhcccccc
Confidence            2233333444443332                           222222   4567899999999999999999999999


Q ss_pred             CCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          230 GASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       230 gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      |+|+|.++.+|+||||+|+..|+.+++++|+++++. .. ..+..+.+|++.|
T Consensus       222 g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~-~~d~~G~TaL~~A  272 (291)
T d1s70b_         222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-ME-AVNKVGQTAFDVA  272 (291)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCCTTSCCTTTSC
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-CcCCCCCCHHHHH
Confidence            999999999999999999999999999999999876 23 3467778887543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=6e-30  Score=224.85  Aligned_cols=205  Identities=21%  Similarity=0.176  Sum_probs=178.4

Q ss_pred             HHHHHHHHHhCCCcccc-cCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 014696           29 LQEAKALLEYNPRLVRY-STFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK  107 (420)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~-~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  107 (420)
                      .|+|++|+++|++++.. +.  .|+||||+||.+|+.+++++|++.|++++.++..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~--~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDK--TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCC--CCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            48999999999998753 33  4589999999999999999999999999999999999999999999998888887776


Q ss_pred             CCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccc-cchhhHHHHHHhcCCHHH
Q 014696          108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER-YFHLEVLLHLTLNGHVES  186 (420)
Q Consensus       108 a~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~aa~~g~~~~  186 (420)
                      ..........|.++.+.+.........+.|...+...                     +.. ..+.+++.+++..+..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~---------------------~~~~~~~~t~l~~~~~~~~~~~  138 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI---------------------NAADNSGKTALHWAAAVNNTEA  138 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT---------------------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccc---------------------cccCCCCCCcchhhcccCccee
Confidence            6555555557899999999999999999988653321                     111 223345666699999999


Q ss_pred             HHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHh
Q 014696          187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL  259 (420)
Q Consensus       187 v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL  259 (420)
                      ++.|++.+.+++   ..|..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++|+.+++++|
T Consensus       139 ~~~l~~~~~~~~---~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         139 VNILLMHHANRD---AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccccc---ccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999998   7788999999999999999999999999999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=211.40  Aligned_cols=153  Identities=28%  Similarity=0.338  Sum_probs=135.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      +|||+||..|+.++|++|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+++|++++..+. .|.++|+.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccc-cCcccccccccccccc
Confidence            7999999999999999999999999999999999999886 7899999999999999998886 8999999999888888


Q ss_pred             HHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHH
Q 014696          133 CIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLH  212 (420)
Q Consensus       133 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh  212 (420)
                      +++.|+.                                                     .+.+++   ..+..|.+|||
T Consensus        81 ~~~~l~~-----------------------------------------------------~~~~~~---~~~~~~~~~l~  104 (156)
T d1ihba_          81 TLQTLLE-----------------------------------------------------FQADVN---IEDNEGNLPLH  104 (156)
T ss_dssp             HHHHHHH-----------------------------------------------------TTCCTT---CCCTTSCCHHH
T ss_pred             ccccccc-----------------------------------------------------cccccc---ccccccccccc
Confidence            7777764                                                     344455   55678999999


Q ss_pred             HHHHcCCHHHHHHHHHhCC-CccccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          213 YAACGGNAQCCQILIAMGA-SLTAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       213 ~Aa~~g~~~iv~~Ll~~ga-d~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                      +|+..++.+++++|+++|+ +++.+|.+|+||||+|++.++.+++++|+++|
T Consensus       105 ~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         105 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999976 78899999999999999999999999998875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-27  Score=208.92  Aligned_cols=211  Identities=27%  Similarity=0.293  Sum_probs=176.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHH----cCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHH
Q 014696           50 VRNSPLHYSAAQGHHEIVSLLIE----SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA  125 (420)
Q Consensus        50 ~g~t~Lh~Aa~~g~~~iv~~Ll~----~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A  125 (420)
                      +|+||||+|+.+|+.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++.+.... .|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccc-ccccccccc
Confidence            47999999999999999998875    7999999999999999999999999999999999999998886 899999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHH-HHHhcCCHHHHHHHHHcCCCcccccccC
Q 014696          126 ALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL-HLTLNGHVESVQLLLDLGASVSEYLSVS  204 (420)
Q Consensus       126 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~aa~~g~~~~v~~Ll~~ga~~~~~~~~~  204 (420)
                      ...++.++++.+........                 ...+........++ .+.........+.|.....+...  ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~  141 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGT-----------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA--VDI  141 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTS-----------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCT
T ss_pred             cccccccchhhhhhcccccc-----------------ccccccccccccccccccccccchhhhhhhcccccccc--ccc
Confidence            99999999998876432111                 11111112222334 44777888889999888777654  456


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHH
Q 014696          205 GAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSI  282 (420)
Q Consensus       205 ~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~  282 (420)
                      ..+.++|+.|+..+...+++.++++|.+++.+|..|.||||+|+..|+.+++++|+++++.  ....+..+.+|++.|
T Consensus       142 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad--~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         142 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD--SSLKNCHNDTPLMVA  217 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCTTTTC
T ss_pred             cchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999875  223577788887643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.2e-28  Score=200.90  Aligned_cols=151  Identities=25%  Similarity=0.347  Sum_probs=132.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS  131 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~  131 (420)
                      .||||.|++.|+.++|++||++|++++ .|..|+||||+|+..++.++++.++.........+. .+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            489999999999999999999999887 688899999999999999999999888777766664 778888888887777


Q ss_pred             HHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHH
Q 014696          132 RCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSL  211 (420)
Q Consensus       132 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpL  211 (420)
                      +++++++                                                     .+|++.+   .++..|+|||
T Consensus        81 ~~~~~l~-----------------------------------------------------~~~~~~~---~~~~~g~T~L  104 (153)
T d1awcb_          81 NIVEVLL-----------------------------------------------------KHGADVN---AKDMLKMTAL  104 (153)
T ss_dssp             HHHHHHH-----------------------------------------------------TTTCCTT---CCCTTSCCHH
T ss_pred             eeeeccc-----------------------------------------------------ccCCccc---cccccCchHH
Confidence            7666655                                                     4566666   6678899999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhh
Q 014696          212 HYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS  260 (420)
Q Consensus       212 h~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~  260 (420)
                      |+|+..|+.++|++|+++|+|++.+|.+|+||||+|+.+|+.+++++|.
T Consensus       105 ~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.3e-28  Score=202.28  Aligned_cols=151  Identities=28%  Similarity=0.353  Sum_probs=107.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH
Q 014696           53 SPLHYSAAQGHHEIVSLLIES-GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS  131 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~-g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~  131 (420)
                      ..|+.||.+|+.++|++|++. +++++..|..|+||||+|+ .|+.+++++|++++.+++..+. .|.+|+++++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            357777777777777777764 6677777777777777765 4667777777777777777665 677777777776666


Q ss_pred             HHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHH
Q 014696          132 RCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSL  211 (420)
Q Consensus       132 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpL  211 (420)
                      +++++++                                                     ++|++++   .++..|.|||
T Consensus        82 ~~~~~~l-----------------------------------------------------~~~~~~n---~~~~~~~t~L  105 (156)
T d1bd8a_          82 DTLKVLV-----------------------------------------------------EHGADVN---VPDGTGALPI  105 (156)
T ss_dssp             HHHHHHH-----------------------------------------------------HTTCCSC---CCCTTSCCHH
T ss_pred             ccccccc-----------------------------------------------------ccccccc---cccCCCCeee
Confidence            6555554                                                     3455555   4566677777


Q ss_pred             HHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          212 HYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       212 h~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      |+|++.|+.+++++|+ .|++++.+|.+|+||||+|+++|+.+++++|+++
T Consensus       106 ~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         106 HLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7777777777777666 5777777777777777777777777777777764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=5.8e-30  Score=243.05  Aligned_cols=198  Identities=16%  Similarity=0.031  Sum_probs=147.0

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHH---HHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccc-CCCChHHH
Q 014696           48 FGVRNSPLHYSAAQGHHEIVSL---LIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADY-LNGGTALH  123 (420)
Q Consensus        48 ~~~g~t~Lh~Aa~~g~~~iv~~---Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~~g~tpL~  123 (420)
                      +..|.||||+|+.+||.+++++   |++.|+++|.+|..|+||||+|+++|+.++|++|+++|++++..+. ..|.||||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            3456799999999999877665   6788999999998999999999999999999999999988877653 25889999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHH-HhcCCHHHHHHHHHcCCCcccc--
Q 014696          124 LAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEY--  200 (420)
Q Consensus       124 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a-a~~g~~~~v~~Ll~~ga~~~~~--  200 (420)
                      +|+.+||.++|++|++.+...                  ...+.....+.+++++ +.+|+.+++++|++.|++++..  
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~------------------~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~  228 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTE------------------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI  228 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGG------------------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHcCCcc------------------cccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHH
Confidence            999999999999998753211                  1112223345566665 5788999999998887665421  


Q ss_pred             ----------------------------cccCC----------------CCccHHHHHHHcCCHHHHHHHHHhCCCc---
Q 014696          201 ----------------------------LSVSG----------------AGSTSLHYAACGGNAQCCQILIAMGASL---  233 (420)
Q Consensus       201 ----------------------------~~~~~----------------~g~TpLh~Aa~~g~~~iv~~Ll~~gad~---  233 (420)
                                                  .....                .+.++|+.|+..|+.+++++|++.+...   
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~  308 (346)
T d2ajaa1         229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA  308 (346)
T ss_dssp             CTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS
T ss_pred             HHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhc
Confidence                                        00000                1246788899999999999999887643   


Q ss_pred             --cccccCCCCHHHHHHHcCchhHHHHhhhCC
Q 014696          234 --TAENANGWTPLMVARSWHRTGLEDILSTQP  263 (420)
Q Consensus       234 --~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~  263 (420)
                        +..+.+|+||||+|++.|+.+++++|++.+
T Consensus       309 ~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         309 PTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             SCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             ccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence              344567999999999999999999999764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.9e-28  Score=214.34  Aligned_cols=193  Identities=24%  Similarity=0.221  Sum_probs=157.1

Q ss_pred             CCHHHHHHHHcCCHHHHH----HHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHH
Q 014696           16 SGERLVSAARDGDLQEAK----ALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQA   91 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~----~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A   91 (420)
                      +.++||.|+..|+.+.+.    .+...+..++..+  ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d--~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC--TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCC--CCCCccccccccccccccccccccccccccccccccccccccc
Confidence            568899999999975554    5555676766544  4679999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCcc-----ccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcc
Q 014696           92 CQHGHWEVVLTLILYKANIHRA-----DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD  166 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~ga~~~~~-----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (420)
                      +.+++.+++++|++.+......     ....|.||||.|+..++.+++++|+..+....                   ..
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-------------------~~  140 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-------------------AQ  140 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-------------------CC
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc-------------------cc
Confidence            9999999999999986654322     22368999999999999999999997643221                   11


Q ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCC
Q 014696          167 ERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS  232 (420)
Q Consensus       167 ~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad  232 (420)
                      ....+.++++.|+..|+.+++++|+++|+|++   .++..|.||||+|+..++.+++++|++.+.+
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~---~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC---CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCccc---ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            11123445555699999999999999999999   7889999999999999999999999998765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.2e-27  Score=219.01  Aligned_cols=188  Identities=20%  Similarity=0.267  Sum_probs=151.1

Q ss_pred             CCHHHHHHHHcCCHHHHHHHH--------HhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCH
Q 014696           16 SGERLVSAARDGDLQEAKALL--------EYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTA   87 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~Tp   87 (420)
                      +.||||+|+..|+.++|+.|+        +.|++++..+  ..|+||||+|+..|+.++|++|+++|++++.+|.+|+||
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d--~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD--CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccC--CCCCeeecccccccccccccccccccccccccccccccc
Confidence            569999999999999998875        5577777644  466999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCC---CCCccc-------------------------------------------cCCCChH
Q 014696           88 LMQACQHGHWEVVLTLILYKA---NIHRAD-------------------------------------------YLNGGTA  121 (420)
Q Consensus        88 L~~A~~~g~~~iv~~Ll~~ga---~~~~~~-------------------------------------------~~~g~tp  121 (420)
                      |++|+..++.++++++...+.   .++..+                                           ...|.||
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            999999999988888764321   111111                                           1257888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcc-cccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc
Q 014696          122 LHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFD-ERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY  200 (420)
Q Consensus       122 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~  200 (420)
                      ||+++..++.+++++++.....                    ... ....+.++++.|+..|+.++|++|+++|++++  
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~--------------------~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin--  248 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGS--------------------NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE--  248 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCC--------------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--
T ss_pred             cccccccccccccccccccccc--------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--
Confidence            8888888888888876643211                    111 12233455666799999999999999999999  


Q ss_pred             cccCCCCccHHHHHHHcCCHHHHHHHHH
Q 014696          201 LSVSGAGSTSLHYAACGGNAQCCQILIA  228 (420)
Q Consensus       201 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~  228 (420)
                       .+|..|.||||+|++.|+.++|++|++
T Consensus       249 -~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         249 -AVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             -CCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             -CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             788999999999999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.1e-27  Score=197.25  Aligned_cols=153  Identities=24%  Similarity=0.349  Sum_probs=136.4

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhC-CCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Q 014696           16 SGERLVSAARDGDLQEAKALLEYN-PRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH   94 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~   94 (420)
                      ++++|+.||..|++++|+.|++.+ .+++.  .+..|+||||+|+ .|+.+++++|++++.+++..+..|.+||++|+..
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~--~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC--CCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCc--cCCCCCccccccc-cccccccccccccccccccccccccccccccccc
Confidence            468899999999999999999874 45444  3456799999987 5899999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEV  174 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (420)
                      ++.+++++++++|++++..+. .|.||||+|+..|+.+++++|+                                    
T Consensus        79 ~~~~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~------------------------------------  121 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA------------------------------------  121 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH------------------------------------
T ss_pred             ccccccccccccccccccccC-CCCeeecccccccccccccccc------------------------------------
Confidence            999999999999999999886 8999999999999988887665                                    


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHh
Q 014696          175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM  229 (420)
Q Consensus       175 ~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~  229 (420)
                                        .|++++   .+|..|+||||+|++.|+.+++++|++|
T Consensus       122 ------------------~~~~~~---~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         122 ------------------AESDLH---RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ------------------TTSCTT---CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ------------------cccccc---ccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                              356666   6788999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=196.97  Aligned_cols=154  Identities=27%  Similarity=0.413  Sum_probs=139.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      ++||.||..|++++|++|++++++++..+.  .|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~--~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG--FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT--TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC--cccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            799999999999999999999999876544  5699999886 7999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHH
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLH  177 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (420)
                      +.++.|++.+.+++..+. .|.+|||+|+..++.+++++|++++                                    
T Consensus        80 ~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~------------------------------------  122 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHT------------------------------------  122 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS------------------------------------
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccc------------------------------------
Confidence            999999999999998886 9999999999999998888887542                                    


Q ss_pred             HHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhC
Q 014696          178 LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG  230 (420)
Q Consensus       178 aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~g  230 (420)
                                      +.+.+   .++..|.||||+|++.|+.++|++|+++|
T Consensus       123 ----------------~~~~~---~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         123 ----------------ASNVG---HRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             ----------------CCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ----------------ccccc---ccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                            12444   66788999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-25  Score=204.00  Aligned_cols=235  Identities=24%  Similarity=0.256  Sum_probs=176.8

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCC
Q 014696           52 NSPLHYSAAQGHHEIVSLLIESGVDINLRN-YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGH  130 (420)
Q Consensus        52 ~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~  130 (420)
                      +|+||+|+++|+.++|++|+++|+++|.++ ..|+||||+|+..|+.+++++|++.+......+. .+.+|.++|...+.
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccccccc-ccchhhHHHhhcCC
Confidence            699999999999999999999999999776 4699999999999999999999999999888775 78889999999999


Q ss_pred             HHHHHHHHHhcCCCChh--------hHH----------HHhhhccC----CCCchhc-ccccchhhHHHHHHhcCCHHHH
Q 014696          131 SRCIRLLLADYIPSVPN--------AWN----------RLRKKSNK----TGSILEF-DERYFHLEVLLHLTLNGHVESV  187 (420)
Q Consensus       131 ~~iv~~Ll~~~~~~~~~--------~~~----------~~~~~~~~----~~~~~~~-~~~~~~~~~~l~aa~~g~~~~v  187 (420)
                      .+...++++........        .+.          ........    ....... .....+.++++.|+..|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence            98888888764432210        000          00000000    0001111 1122233455566999999999


Q ss_pred             HHHHHc-CCCcccccccCCCCccHHHHHHHc----CCHHHHHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhC
Q 014696          188 QLLLDL-GASVSEYLSVSGAGSTSLHYAACG----GNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ  262 (420)
Q Consensus       188 ~~Ll~~-ga~~~~~~~~~~~g~TpLh~Aa~~----g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~  262 (420)
                      ++|+++ |++++   ..+..|.++++.+...    +..+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.
T Consensus       165 ~~Ll~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         165 KILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHTSCCCTT---CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHhccCCCcc---cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            999975 88998   6778888888776543    345799999999999999999999999999999999999999986


Q ss_pred             CCCccccCCCCCCCchHHHHHHHHHHcCCCCCC
Q 014696          263 PEGRLEVLPSPYLALPLMSIVKIARECGWRNSD  295 (420)
Q Consensus       263 ~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~  295 (420)
                      ...++.. .+..+.||++.    |.+.|+.+++
T Consensus       242 ~g~din~-~d~~G~TpL~~----A~~~~~~eiv  269 (285)
T d1wdya_         242 EHIEIND-TDSDGKTALLL----AVELKLKKIA  269 (285)
T ss_dssp             SSCCTTC-CCTTSCCHHHH----HHHTTCHHHH
T ss_pred             CCCCCcC-CCCCCCCHHHH----HHHcCCHHHH
Confidence            5544443 56778888753    4444444433

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.3e-25  Score=187.01  Aligned_cols=151  Identities=30%  Similarity=0.419  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG   95 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g   95 (420)
                      .+|||+.|++.|+.++|+.||+++++.+   .+..|+||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            3589999999999999999999998765   3566799999999999999999999998888888889999999999999


Q ss_pred             cHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHH
Q 014696           96 HWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVL  175 (420)
Q Consensus        96 ~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (420)
                      +.+++++++.++++++..+. .|.||||+|+..|+.+++++|+                                     
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll-------------------------------------  120 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLI-------------------------------------  120 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH-------------------------------------
T ss_pred             cceeeecccccCCccccccc-cCchHHHhhhhcchhheeeecc-------------------------------------
Confidence            99999999999999999986 9999999999988887766655                                     


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHH
Q 014696          176 LHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQIL  226 (420)
Q Consensus       176 l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~L  226 (420)
                                      ++|++++   ..|..|.||||+|+.+|+.+++++|
T Consensus       121 ----------------~~gad~~---~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         121 ----------------KYGADVH---TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             ----------------HTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ----------------ccccCCc---ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                            6788888   7788999999999999999999977

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=5.2e-26  Score=199.42  Aligned_cols=204  Identities=21%  Similarity=0.205  Sum_probs=169.7

Q ss_pred             HHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 014696           64 HEIVSLLIESGVDINL-RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI  142 (420)
Q Consensus        64 ~~iv~~Ll~~g~~v~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  142 (420)
                      .|+|++|+++|+|+|. .|.+|.||||+|+.+|+.+++++|+++|++++..+. .+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDN-TGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccc-cccccccccccccccccccccccccc
Confidence            4899999999999997 589999999999999999999999999999999987 89999999999999887777664321


Q ss_pred             CCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHH
Q 014696          143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQC  222 (420)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~i  222 (420)
                      .                   ........+......+.........++|...+++++   ..+..|.|||++|+..+..++
T Consensus        81 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~---~~~~~~~t~l~~~~~~~~~~~  138 (209)
T d1ot8a_          81 T-------------------NLNARMHDGTTPLILAARLAIEGMVEDLITADADIN---AADNSGKTALHWAAAVNNTEA  138 (209)
T ss_dssp             C-------------------CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT---CBCTTSCBHHHHHHHTTCHHH
T ss_pred             c-------------------ccccccccccccccccccccchhhhhhhhhhccccc---ccCCCCCCcchhhcccCccee
Confidence            1                   111112223334444577788888999999999998   678889999999999999999


Q ss_pred             HHHHHHhCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHHHHHHHHHcCCCCCCC
Q 014696          223 CQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECGWRNSDS  296 (420)
Q Consensus       223 v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~g~~~~~~  296 (420)
                      ++.|++++++++.+|.+|.||||+|+..|+.+++++|+++++..  ...+..+.+|++    +|.+.|+.+++.
T Consensus       139 ~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~--n~~d~~g~Tpl~----~A~~~~~~~iv~  206 (209)
T d1ot8a_         139 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR--EITDHMDRLPRD----VASERLHHDIVR  206 (209)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHH----HHHHTTCHHHHH
T ss_pred             eeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCC--CCcCCCCCCHHH----HHHHcCCHHHHh
Confidence            99999999999999999999999999999999999999998762  245677888765    666667655543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=8.7e-28  Score=227.92  Aligned_cols=213  Identities=18%  Similarity=0.174  Sum_probs=150.9

Q ss_pred             CCCHHHHHHHHcCCHHHHHH---HHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCcc--CCCCCHHH
Q 014696           15 ASGERLVSAARDGDLQEAKA---LLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN--YRGQTALM   89 (420)
Q Consensus        15 ~~~~~L~~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d--~~g~TpL~   89 (420)
                      .+.++|+.|+++|+.+++++   |++.+++++..+.  .|.||||+|+.+||.++|++|+++|++++..+  .+|+||||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~--~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA--ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH--HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC--CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            45689999999999887765   7888888776554  45899999999999999999999999998876  45999999


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCcc--ccCCCChHHHHHHHcCCHHHHHHHHHhcCCCCh-----------hhHH------
Q 014696           90 QACQHGHWEVVLTLILYKANIHRA--DYLNGGTALHLAALNGHSRCIRLLLADYIPSVP-----------NAWN------  150 (420)
Q Consensus        90 ~A~~~g~~~iv~~Ll~~ga~~~~~--~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-----------~~~~------  150 (420)
                      +|+.+|+.++|++|++.|++....  +...|.||++.|+.+||.+++++|++.+.....           ....      
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHV  246 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhh
Confidence            999999999999999999875432  122577888889999999999999976532100           0000      


Q ss_pred             -HH---hhhccC---CC--Cchhcc---cccchhhHHHHHHhcCCHHHHHHHHHcCCCcccc--cccCCCCccHHHHHHH
Q 014696          151 -RL---RKKSNK---TG--SILEFD---ERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEY--LSVSGAGSTSLHYAAC  216 (420)
Q Consensus       151 -~~---~~~~~~---~~--~~~~~~---~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~--~~~~~~g~TpLh~Aa~  216 (420)
                       ..   ......   ..  ......   ........+..++..|+.+++++|++.+......  ...+.+|.||||+|++
T Consensus       247 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~  326 (346)
T d2ajaa1         247 NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR  326 (346)
T ss_dssp             HHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHH
Confidence             00   000000   00  000000   0011123344457788999999999987654321  1344679999999999


Q ss_pred             cCCHHHHHHHHHh
Q 014696          217 GGNAQCCQILIAM  229 (420)
Q Consensus       217 ~g~~~iv~~Ll~~  229 (420)
                      .|+.++|++||+.
T Consensus       327 ~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         327 LGNQGACALLLSI  339 (346)
T ss_dssp             HTCTTHHHHHTTS
T ss_pred             cCcHHHHHHHhCC
Confidence            9999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=180.82  Aligned_cols=61  Identities=31%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccc
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD  114 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~  114 (420)
                      ++||+|+.+|+.++|++|+++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++..+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~   65 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD   65 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccc
Confidence            4555555555555555555555555555555555555442 355555555555555544443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6e-26  Score=211.05  Aligned_cols=181  Identities=18%  Similarity=0.159  Sum_probs=118.4

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH-------HHHHHHHHcCCCCCccccCCCCh
Q 014696           48 FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW-------EVVLTLILYKANIHRADYLNGGT  120 (420)
Q Consensus        48 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~-------~iv~~Ll~~ga~~~~~~~~~g~t  120 (420)
                      +..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.       +++++|.   ..+...+. .|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~-~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDS-MNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECT-TCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhccc-ccCC
Confidence            45679999999999999999999999999999999999999999987752       3444443   34555554 8999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHhcCCCChhhHHHHhhhccCCCCchhcccccchhhHHHHHHhcCCHHH-----HHHHH
Q 014696          121 ALHLAALNGH----SRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVES-----VQLLL  191 (420)
Q Consensus       121 pL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~~g~~~~-----v~~Ll  191 (420)
                      |||+++..+.    ..++++.++..       ...+... ..   .............+...........     +..++
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDIL-------MGWIVKK-QN---RPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHH-------HHHHHHG-GG---CCEEEC----------------CHHHHHCSHHHHH
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHH-------HHHHHhc-CC---cchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            9999886543    44444433210       0000000 00   0000000011111111111111111     22233


Q ss_pred             HcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHHH
Q 014696          192 DLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVAR  248 (420)
Q Consensus       192 ~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  248 (420)
                      ...  +|   .+|..|+||||+|++.|+.++|++|+++|||++.+|..|+|||++|+
T Consensus       249 ~~~--in---~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         249 ANM--LN---AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHT--TT---CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             hcC--cc---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            332  45   67889999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.6e-25  Score=176.51  Aligned_cols=120  Identities=24%  Similarity=0.301  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCC-CHHHHHHHc
Q 014696           16 SGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQ-TALMQACQH   94 (420)
Q Consensus        16 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~-TpL~~A~~~   94 (420)
                      +.++||.|++.|++++|++|++++++++..+.  .|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~--~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNS--YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS--SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccc--cccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            56789999999999999999999988876554  5689999775 7999999999999999999998876 699999999


Q ss_pred             CcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHH
Q 014696           95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA  139 (420)
Q Consensus        95 g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  139 (420)
                      |+.+++++|+++|++++..+. .|+||||+|+.+|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~-~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999986 99999999999999999999974

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.1e-25  Score=176.56  Aligned_cols=46  Identities=26%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             ccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCHHHHH
Q 014696          202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA  247 (420)
Q Consensus       202 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  247 (420)
                      .+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|
T Consensus        63 ~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            3344566677777777777777777777777777777777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-24  Score=173.27  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=110.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcH
Q 014696           18 ERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW   97 (420)
Q Consensus        18 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~   97 (420)
                      +.|+.|+..|++++|++|++++++++..+.  .|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~--~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND--EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc--ccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            579999999999999999999998876554  468999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCccccCCCChHHHHH--HHcCCHHHHHHHHHh
Q 014696           98 EVVLTLILYKANIHRADYLNGGTALHLA--ALNGHSRCIRLLLAD  140 (420)
Q Consensus        98 ~iv~~Ll~~ga~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~  140 (420)
                      ++|++|+++|++++..+...|.||++++  ...|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999988765788887765  577999999999863

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-24  Score=173.95  Aligned_cols=85  Identities=33%  Similarity=0.390  Sum_probs=67.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHH
Q 014696           53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR  132 (420)
Q Consensus        53 t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~  132 (420)
                      ++|+.|+..|+.++|++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++..+. +|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccc-cCcccccccchhhHHH
Confidence            578888888888888888888888888888888888888888888888888888888877775 7777777777766665


Q ss_pred             HHHHHH
Q 014696          133 CIRLLL  138 (420)
Q Consensus       133 iv~~Ll  138 (420)
                      ++++|+
T Consensus        82 ~v~~Ll   87 (130)
T d1ycsb1          82 VCKFLV   87 (130)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4e-25  Score=175.88  Aligned_cols=107  Identities=30%  Similarity=0.378  Sum_probs=100.6

Q ss_pred             CHHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCc
Q 014696           17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGH   96 (420)
Q Consensus        17 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A~~~g~   96 (420)
                      .+||++|++.|++++|++|++++++++..+.  .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~--~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS--SSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc--cccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            3799999999999999999999998876554  56899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCccccCCCChHHHHHH
Q 014696           97 WEVVLTLILYKANIHRADYLNGGTALHLAA  126 (420)
Q Consensus        97 ~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~  126 (420)
                      .+++++|+++|++++..+. .|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~-~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGP-DGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSS-STCCCCCTCS
T ss_pred             hhhhhhhhcccccceeeCC-CCCCHHHHHh
Confidence            9999999999999999986 9999999983

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.7e-23  Score=170.02  Aligned_cols=123  Identities=23%  Similarity=0.277  Sum_probs=111.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccc----cCCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCccCCCCCHHHHH
Q 014696           19 RLVSAARDGDLQEAKALLEYNPRLVRY----STFGVRNSPLHYSAAQ---GHHEIVSLLIESGVDINLRNYRGQTALMQA   91 (420)
Q Consensus        19 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~g~~v~~~d~~g~TpL~~A   91 (420)
                      .|+.|++.+++..+..++..+.++...    ..+..|+||||+|+..   |+.++|++|+++|+++|.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            578999999999999999988765533    2234579999999974   788999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 014696           92 CQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI  142 (420)
Q Consensus        92 ~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  142 (420)
                      +..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999986 99999999999999999999998644

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.5e-22  Score=164.77  Aligned_cols=128  Identities=27%  Similarity=0.372  Sum_probs=102.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcc-----ccCCCChHHHHHHHcCCHHHHHHHHHhcCCCChhhHHHHhhhccCCCC
Q 014696           87 ALMQACQHGHWEVVLTLILYKANIHRA-----DYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGS  161 (420)
Q Consensus        87 pL~~A~~~g~~~iv~~Ll~~ga~~~~~-----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~  161 (420)
                      .|..|++.++...+..++..|.+++..     .+..|+||||+|+..++                               
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~-------------------------------   57 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD-------------------------------   57 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC-------------------------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC-------------------------------
Confidence            344566666666666666666655433     12368999999987532                               


Q ss_pred             chhcccccchhhHHHHHHhcCCHHHHHHHHHcCCCcccccccCCCCccHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 014696          162 ILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW  241 (420)
Q Consensus       162 ~~~~~~~~~~~~~~l~aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~gad~~~~d~~G~  241 (420)
                                         .++.+++++|+++|++++   .+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+
T Consensus        58 -------------------~~~~~iv~~Ll~~gadin---~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  115 (154)
T d1dcqa1          58 -------------------RTSLHIVDFLVQNSGNLD---KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE  115 (154)
T ss_dssp             -------------------TTTHHHHHHHHHHCSCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -------------------CCCHHHHHHHHHcCCChh---hhhhhhccccccccccccccccccccccCccccccCCCCC
Confidence                               134566777778899998   7788999999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCchhHHHHhhhCCCCcc
Q 014696          242 TPLMVARSWHRTGLEDILSTQPEGRL  267 (420)
Q Consensus       242 TpL~~A~~~g~~~i~~lL~~~~~~~~  267 (420)
                      ||||+|+++|+.+++++|++.++...
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            99999999999999999998766543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.9e-21  Score=179.02  Aligned_cols=183  Identities=15%  Similarity=0.105  Sum_probs=116.0

Q ss_pred             HHHcCCCCCCc-cCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccccCCCChHHHHHHHcCCH-------HHHHHHHHhc
Q 014696           70 LIESGVDINLR-NYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS-------RCIRLLLADY  141 (420)
Q Consensus        70 Ll~~g~~v~~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~g~tpL~~A~~~g~~-------~iv~~Ll~~~  141 (420)
                      +...+.++|.. |..|+||||+|+..|+.++|++|+++|++++.++. .|+||||.|+..++.       ++++++.+. 
T Consensus        92 ~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~-  169 (301)
T d1sw6a_          92 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPC-  169 (301)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-
T ss_pred             CCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc-ccccHHHHhhhcccchhhhhHHHHHHHHhhh-
Confidence            33457888876 89999999999999999999999999999999986 899999999987752       333433221 


Q ss_pred             CCCChhhHHHHhhhccCCCCchhcccccchhhHHH-HHHhc----CCHH--------HHHHHHHcCCCcccccccCCCCc
Q 014696          142 IPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL-HLTLN----GHVE--------SVQLLLDLGASVSEYLSVSGAGS  208 (420)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~aa~~----g~~~--------~v~~Ll~~ga~~~~~~~~~~~g~  208 (420)
                                             ....+..+.+++ +++..    +...        ++.+++..+.....  .....+.
T Consensus       170 -----------------------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~  224 (301)
T d1sw6a_         170 -----------------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ--SGTNEKE  224 (301)
T ss_dssp             -----------------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEE--EC-----
T ss_pred             -----------------------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchh--ccccccc
Confidence                                   111112222333 33322    2222        34556666555443  3344566


Q ss_pred             cHHHHHHHcCCHHHHHHHHH---hCCCccccccCCCCHHHHHHHcCchhHHHHhhhCCCCccccCCCCCCCchHHH
Q 014696          209 TSLHYAACGGNAQCCQILIA---MGASLTAENANGWTPLMVARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMS  281 (420)
Q Consensus       209 TpLh~Aa~~g~~~iv~~Ll~---~gad~~~~d~~G~TpL~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~pl~~  281 (420)
                      ++++.+........+..+..   .+..+|.+|.+|+||||+|++.|+.+++++|++.++.  ...++..|.+|+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd--~~~~n~~G~Tpl~~  298 (301)
T d1sw6a_         225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD--PFIANKSGLRPVDF  298 (301)
T ss_dssp             -----------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC--TTCCCTTSCCGGGG
T ss_pred             chhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHH
Confidence            67766665555444433211   1234788999999999999999999999999999887  34467788888753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=7e-08  Score=68.50  Aligned_cols=54  Identities=26%  Similarity=0.562  Sum_probs=44.2

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCC
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPG  365 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  365 (420)
                      ...|.||++..-..+..+|||.+|..|........           ...||+||..|.+...+..
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~-----------~~~CP~Cr~~i~~~~~i~i   76 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-----------GQGCPFCRCEIKGTEPIVV   76 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT-----------CCSCTTTCCCCCCCCCSSC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC-----------cCcCCCCCcCccCCceeec
Confidence            45799999999999999999999999998775432           2349999999998876543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.32  E-value=2.3e-07  Score=63.75  Aligned_cols=50  Identities=32%  Similarity=0.670  Sum_probs=39.5

Q ss_pred             CCCCcccccCccce-EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccccc
Q 014696          300 CPDPCVVCLERKCT-VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFD  361 (420)
Q Consensus       300 ~~d~C~vC~~~~~~-v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  361 (420)
                      ..|.|.||++.... ++..+|||.+|..|........            ..||+||.+|.++.
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~------------~~CP~CR~~i~~~~   54 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEE
T ss_pred             CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC------------CcCCCCCcchHhhc
Confidence            45789999997654 4667999999999998876543            24999999987764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.7e-07  Score=60.68  Aligned_cols=49  Identities=20%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             CCCCcccccCc-----cceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          300 CPDPCVVCLER-----KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       300 ~~d~C~vC~~~-----~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      +...|.||++.     ...+...+|||.+|..|...+....           ...||+||..|.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC-----------cCCCCCCCcCccc
Confidence            45789999874     2334567999999999999887543           2349999987743

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.1e-07  Score=58.32  Aligned_cols=43  Identities=21%  Similarity=0.522  Sum_probs=34.8

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .|.||++.....+..+|||.+|..|..    .           ....||+||+.|..-
T Consensus         8 ~C~IC~~~~~~p~~lpCgH~fC~~Ci~----~-----------~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           8 RCQQCQAEAKCPKLLPCLHTLCSGCLE----A-----------SGMQCPICQAPWPLG   50 (56)
T ss_dssp             SCSSSCSSCBCCSCSTTSCCSBTTTCS----S-----------SSSSCSSCCSSSSCC
T ss_pred             CCcccCcccCCCEEecCCCHHhHHHHH----c-----------CCCcCcCCCCcccCC
Confidence            799999988888888999999999962    0           134599999888643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=3.3e-06  Score=60.30  Aligned_cols=47  Identities=26%  Similarity=0.560  Sum_probs=38.2

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .|.||++..-..+..+|||.+|..|........           ...||.||.++...
T Consensus        25 ~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          25 SCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT   71 (86)
T ss_dssp             BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred             CCccCCcchhcceecCCCChhhHHHHHHHHhhC-----------CCcCcccCCCCChh
Confidence            599999988888999999999999998765322           23599999987544

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.97  E-value=3.2e-06  Score=54.95  Aligned_cols=47  Identities=30%  Similarity=0.627  Sum_probs=34.3

Q ss_pred             CCCCcccccCccc---eEE-EeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          300 CPDPCVVCLERKC---TVA-AKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       300 ~~d~C~vC~~~~~---~v~-~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      +...|.||++..-   .+. ..+|||.+|..|....-...            ..||+||+.|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~------------~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH------------STCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC------------CSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC------------CcCCCCCCEeE
Confidence            3457999997643   233 34699999999998876443            24999998874

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5e-06  Score=62.00  Aligned_cols=47  Identities=38%  Similarity=0.870  Sum_probs=36.3

Q ss_pred             CcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          303 PCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      .|.||++..-..+..+|||.+|..|.........         +...||+||..+.
T Consensus        23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDIT   69 (103)
T ss_dssp             SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCC
T ss_pred             CCCccCchhCCeEEcCCCCchhhHHHHHHHHHCC---------CCCcCcCCCCcCC
Confidence            5999998776667789999999999877654431         2245999998874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.1e-06  Score=53.80  Aligned_cols=45  Identities=22%  Similarity=0.535  Sum_probs=31.5

Q ss_pred             CcccccCcc----ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          303 PCVVCLERK----CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       303 ~C~vC~~~~----~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      .|.||++..    ..+...+|||.+|..|...+-...           ...||+||+++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~-----------~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-----------NGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTS-----------CCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhc-----------CCCCCccCCcCC
Confidence            478888742    122345899999999997775332           235999998765

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.5e-05  Score=60.49  Aligned_cols=50  Identities=26%  Similarity=0.681  Sum_probs=35.9

Q ss_pred             CCCcccccCcc------------------ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          301 PDPCVVCLERK------------------CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       301 ~d~C~vC~~~~------------------~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      .+.|.||++..                  ..+...+|||.||..|........+.       .+...||+||..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-------~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-------CCCCccccccchh
Confidence            35799998753                  23566789999999999877654321       2345699999765

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=7e-05  Score=53.69  Aligned_cols=35  Identities=34%  Similarity=0.557  Sum_probs=27.6

Q ss_pred             ceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccc
Q 014696          312 CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIV  358 (420)
Q Consensus       312 ~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~  358 (420)
                      +.+...+|||.++..|....-...+            .||+||++-+
T Consensus        50 ~~~~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR~~~~   84 (88)
T d3dplr1          50 CTVAWGVCNHAFHFHCISRWLKTRQ------------VCPLDNREWE   84 (88)
T ss_dssp             CCEEEETTSCEEEHHHHHHHHTTCS------------BCSSSCSBCC
T ss_pred             CCeEEccccCcccHHHHHHHHHHCC------------cCCCCCCccc
Confidence            3567789999999999988875542            4999997643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=5.2e-05  Score=49.26  Aligned_cols=46  Identities=7%  Similarity=-0.024  Sum_probs=35.9

Q ss_pred             CcccccCccceEEEe-CCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          303 PCVVCLERKCTVAAK-GCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       303 ~C~vC~~~~~~v~~~-~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .|.+|++-.-.-+.. .|||.+|..|.........            .||+||+++..-
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~------------~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGG
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc------------CCCccCCcCCHH
Confidence            488898877666655 5999999999988875542            399999887654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=4.7e-05  Score=55.83  Aligned_cols=43  Identities=26%  Similarity=0.609  Sum_probs=31.3

Q ss_pred             CcccccCccceEE-EeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          303 PCVVCLERKCTVA-AKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       303 ~C~vC~~~~~~v~-~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .|.||++..-.-+ ..+|||.+|..|....-              ...||.||..+..
T Consensus        24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~--------------~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCI--------------GTGCPVCYTPAWI   67 (97)
T ss_dssp             SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT--------------TTBCSSSCCBCSC
T ss_pred             CCccCCchhhcCceeCCCCCchhHHHHHHHH--------------hccccccCCcCch
Confidence            6999998665544 45899999999974332              1239999987653

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00031  Score=49.20  Aligned_cols=49  Identities=6%  Similarity=-0.168  Sum_probs=37.5

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSF  360 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~  360 (420)
                      .-.|.+|++-.-.-+..+|||.+|..|....-...           ...||+||..+..-
T Consensus         7 ~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~-----------~~~cP~c~~~l~~~   55 (80)
T d2c2la2           7 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQE   55 (80)
T ss_dssp             TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGG
T ss_pred             cccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC-----------CccCCCcccccccc
Confidence            34599999877777788999999999987765332           12499999887644

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.97  E-value=0.00034  Score=48.69  Aligned_cols=54  Identities=11%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             CCCcccccCccceEEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCccccccccccCC
Q 014696          301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKLPG  365 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  365 (420)
                      .-.|.+|.+-...-+..+|||.+|..|........           ...||.||..+..-.-.|.
T Consensus         8 ~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~-----------~~~cP~~~~~l~~~~l~pN   61 (78)
T d1t1ha_           8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-----------HKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-----------CCBCTTTCCBCSSCCCEEC
T ss_pred             cCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC-----------CCCCCcccccCCcccccch
Confidence            34699999988777888999999999997755332           2359999988766433443

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00017  Score=52.32  Aligned_cols=50  Identities=24%  Similarity=0.496  Sum_probs=35.5

Q ss_pred             CCCcccccCccc--e-EEEeCCCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCc
Q 014696          301 PDPCVVCLERKC--T-VAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCR  354 (420)
Q Consensus       301 ~d~C~vC~~~~~--~-v~~~~cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR  354 (420)
                      ...|.||++...  . +...+|||.+|..|+.......    +..+....+.||.|+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~----i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----IKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHH----HHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHH----HhcCCccccCCcCCC
Confidence            467999998653  2 3455899999999999887654    222333456799865

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.56  E-value=0.00046  Score=45.25  Aligned_cols=48  Identities=13%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             CCCCcccccCccceEEEeC-----CCcccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccc
Q 014696          300 CPDPCVVCLERKCTVAAKG-----CDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI  357 (420)
Q Consensus       300 ~~d~C~vC~~~~~~v~~~~-----cgH~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I  357 (420)
                      +...|.||++..-.-...+     |+|.++..|+.......          +...||+||..+
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~----------~~~~CP~Cr~~~   57 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS----------RNTACQICGVVY   57 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH----------TCSBCTTTCCBC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhC----------CCCCCcccCCee
Confidence            4567999987543333333     46999999998876443          234599999765

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.054  Score=38.75  Aligned_cols=47  Identities=6%  Similarity=-0.073  Sum_probs=36.1

Q ss_pred             CCCcccccCccceEEEeCCCc-ccchhhHHHHhhcCCCcccccCCCCCCCCCCCcccccc
Q 014696          301 PDPCVVCLERKCTVAAKGCDH-EFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS  359 (420)
Q Consensus       301 ~d~C~vC~~~~~~v~~~~cgH-~~C~~C~~~lc~~~~~~~~~~~~~~~~~CP~CR~~I~~  359 (420)
                      .-.|.||.+-...-+..+||| .+|..|........            ..||+||..+..
T Consensus        22 ~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~------------~~~P~~~~~l~~   69 (98)
T d1wgma_          22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD------------QTDPFNRSPLTM   69 (98)
T ss_dssp             TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS------------CBCTTTCSBCCT
T ss_pred             HhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc------------CCcccccccccc
Confidence            346999999888888888876 59999998765333            249999998764