Citrus Sinensis ID: 014754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccHHcccccccccccccccccccHHHHHHHHHHcccHHHHHHccccccccccccEEEEcccccccEEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEcccccccccccccccEEEEccccccHHHHHHHHHHHccEEEEEEEEEEEccccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccEEEEEEEccccccEEEHHHEHHHccEEEEEEEEEEcccccEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHHHHHHHEHccccccEEEEEccEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgvpnddvvliqkgkrpgephvitvncpdktglgcdiCRIILDFGLyitkgdistdgIWCYIVLWVvphsssiirWTNLKNrlmlecpscsvsfyfnqlstrptcspvyLLKLFCLDRKGLLHDVTQVLCELELSIQRVkvtttpdgrvldLFFITDNRELLHTKKRQDETCEQLHAVLGESCiscelqlagpecdchqgvtslspVVAEELFRFELSDKETRLQAlspdmtklkKANVVvdnslspahtllqihcVDHKGLLYDIMRTLKDCnmkisygrfspnsqgyrdldlfiqqkdgkkivdpekQSAICSRLKMEMLHPLRVIIAnrgpdtellvanpvelcgkgrprvfYDVTLALKVLGICVFSAaigrystsEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Flexible Loop (DISEMBL)
mgvpnddvvliqkgkrpgephvitvncpdktglGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELElsiqrvkvtttpdgrvldLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKEtrlqalspdmtklKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYgrfspnsqgyrDLDLFIQqkdgkkivdpEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSaaigrystseREWEIYRFLLDENCKFqlssmvareqiVDRVRRALMGW
Low Complexity Region (SEG)
MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Disordered region (IsUnstruct)
*******************PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELS***************LKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVD***QSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRV*******
Disordered Region (DISOPRED)
**VPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE**********************YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEM******************VANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Disordered Region (DISEMBL)
MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Disordered Region (DISPRO)
*GVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELS****************KKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.434	0.191	0.262	1e-07
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.408	0.182	0.280	2e-06
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.431	0.194	0.230	2e-05
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.286	0.127	0.298	2e-05
Q8UIF1	942	[Protein-PII] uridylyltra	yes	no	0.202	0.090	0.347	4e-05
B9JZI2	941	[Protein-PII] uridylyltra	yes	no	0.357	0.159	0.267	4e-05
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.427	0.192	0.236	4e-05
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.200	0.090	0.310	8e-05
A5ETJ9	931	[Protein-PII] uridylyltra	yes	no	0.420	0.189	0.227	9e-05
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.420	0.189	0.227	9e-05

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 39/221 (17%)

Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
           V  L + C D  GL   +   L     SI   ++ T  DG  LD F++ D          
Sbjct: 755 VTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDG--------- 805

Query: 168 QDETC--EQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQ 225
             E C  E+ H  LG      E  L+G   D  +G+   S            + +  R  
Sbjct: 806 --EGCSFEEPHQ-LGRLNHLVEQALSG-RLDIRKGIEDAS---------HHSTSRRMRAI 852

Query: 226 ALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPN 285
            + P         VV+DN+ S  HT+++++  D  GLL+D+   L   +++IS    +  
Sbjct: 853 HVPP--------RVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT-- 902

Query: 286 SQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLKMEMLHPL 325
           + G R +D+F ++   G KI DP +     +RL+  +L  L
Sbjct: 903 TYGMRAVDVFYVRDLLGMKITDPVR----LARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Gluconobacter oxydans (strain 621H) (taxid: 290633)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176
           D  GL   +   +    ++I   K+TT  DG  LD+F +              +T E  H
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------QTLEG-H 779

Query: 177 AVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKK 236
           A+  E  I+   +LA    D   G   L   +  +  R     + TR   + P       
Sbjct: 780 AIEKEERIA---RLAKTVRDVLTGDLPLEKALRRQPPRLP---ERTRHLTVPP------- 826

Query: 237 ANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF- 295
             V+VDN  S  HT+++I+  D  G LY + R L D  ++IS  R S  + G R +D F 
Sbjct: 827 -RVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVVDSFY 883

Query: 296 IQQKDGKKIVDPEKQSAICSRLK 318
           ++   G KIV   K + I   L+
Sbjct: 884 VKDVFGMKIVHRAKLAQIREALE 906

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 45/226 (19%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           L +F  D   LL  +         +I   ++ TT DG+ LD   I+   +       +DE
Sbjct: 741 LTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISREYD-------RDE 793

Query: 171 TCEQLHAVLGE---SCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQAL 227
              +  A +GE     I   L+L         G T L P V E                 
Sbjct: 794 DEGRRAARIGEIIEQVIDGRLRLPDVVARRAAGKTRLRPFVVE----------------- 836

Query: 228 SPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ 287
                      V+V+N  S  HT++++  +D  GLL+ +   +   N+ I+    +   +
Sbjct: 837 ---------PKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGE 887

Query: 288 GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRG 333
             RD+  ++    G +I  P +Q+AI    K  ++H    ++AN G
Sbjct: 888 RARDV-FYVTDLLGARITAPTRQAAI----KRALIH----LLANGG 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 14/134 (10%)

Query: 80  KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
           K++  +  PS +++   N LS + T     ++++ CLDR GLL ++T VL +L L IQ  
Sbjct: 817 KSKAFVIPPSVNIT---NSLSNKFT-----VIEVECLDRPGLLSEITAVLSDLSLDIQSA 868

Query: 140 KVTTTPDGRVLDLFFITD--NRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDC 197
           ++TT  + +V+D F++TD   +++    KR + T  ++ AV+ E     EL+   P    
Sbjct: 869 RITTFGE-KVIDTFYVTDLVGQKISGDSKRANITA-RMKAVMAEE--EDELRERMPSGII 924

Query: 198 HQGVTSLSPVVAEE 211
               T+ +P  +E+
Sbjct: 925 APAATARTPPASEK 938

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glnD PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 10/95 (10%)

Query: 88  PSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG 147
           PS ++S   N LS + T     ++++ CLDR GLL D+T V+ +L L I   ++TT  + 
Sbjct: 827 PSVTIS---NGLSNKFT-----VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE- 877

Query: 148 RVLDLFFITD-NRELLHTKKRQDETCEQLHAVLGE 181
           +V+D F++TD   + +    RQ    ++L AV+ E
Sbjct: 878 KVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSE 912

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glnD PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 33/183 (18%)

Query: 140 KVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQ 199
           ++ TT DGR LD   I     +   + R+  T  ++           E  LAG +     
Sbjct: 759 QIFTTSDGRALDTILINREFPIDEDEMRRANTISKM----------IEDVLAGKK----- 803

Query: 200 GVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDH 259
               L  V+A            TR +    + T   K +V + NSLS   T+++I C+D 
Sbjct: 804 ---RLPEVIA------------TRTKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDR 848

Query: 260 KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLK 318
            GLL ++   L D ++ I   R +  + G + +D F +    G+KI +  +Q +I  RLK
Sbjct: 849 IGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVIDLVGQKITNENRQGSISVRLK 906

Query: 319 MEM 321
             M
Sbjct: 907 AVM 909

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 32/211 (15%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           L +F  D   LL  +         +I   ++ TT DGR LD   I+   +       +DE
Sbjct: 741 LTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYD-------RDE 793

Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
              +    +GE              D  +G   L  VVA    R      + R   + P+
Sbjct: 794 DEGRRATRIGEMI-----------EDVLEGKLRLPEVVARRTVR-----SKARPFVIEPE 837

Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
           +T        ++N  S  +T++++  +D  GLLY++   +   N+ I+    +   +  R
Sbjct: 838 VT--------INNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 889

Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRLKMEM 321
           D+  ++    G +I  P +QSAI S L   M
Sbjct: 890 DV-FYVTDLLGAQINAPTRQSAIKSALTHVM 919

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQ 297
           V++DN+ S  HT+++++  D  GLLYD+ R L +  ++IS  + S  + G + +D+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904

Query: 298 QKDGKKIVDPEKQSAICSRLKMEMLHP 324
              G K+    K + I  RL   +  P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           L +F +D   LL  +         +I   ++ TT DGR LD   I+   E       +DE
Sbjct: 741 LTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYE-------RDE 793

Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
              +    +GE+                +G   L   VA    R     K+ +  ++ P+
Sbjct: 794 DEGRRATRIGETI-----------EQVLEGKLRLPDAVARRTTR----GKQHKAFSVEPE 838

Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
                   V ++N  S  +T++++  +D  GLLY++   +   N+ I+    +   +  R
Sbjct: 839 --------VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890

Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRL 317
           D+  ++    G +I  P +Q+AI S L
Sbjct: 891 DV-FYVTDLLGAQINAPTRQAAIKSAL 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           L +F +D   LL  +         +I   ++ TT DGR LD   I+   E       +DE
Sbjct: 741 LTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYE-------RDE 793

Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
              +    +GE+                +G   L   VA    R     K+ +  ++ P+
Sbjct: 794 DEGRRATRIGETI-----------EQVLEGKLRLPDAVARRTTR----GKQHKAFSVEPE 838

Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
                   V ++N  S  +T++++  +D  GLLY++   +   N+ I+    +   +  R
Sbjct: 839 --------VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890

Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRL 317
           D+  ++    G +I  P +Q+AI S L
Sbjct: 891 DV-FYVTDLLGAQINAPTRQAAIKSAL 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
224054817	417	predicted protein [Populus trichocarpa]	0.995	1.0	0.799	0.0
225435020	420	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.821	0.0
356558203	424	PREDICTED: uncharacterized protein LOC10	0.971	0.959	0.766	0.0
357454137	421	hypothetical protein MTR_2g096640 [Medic	0.985	0.980	0.745	0.0
297815750	383	hypothetical protein ARALYDRAFT_323253 [	0.909	0.994	0.707	1e-165
225449577	412	PREDICTED: uncharacterized protein LOC10	0.978	0.995	0.669	1e-159
224109552	423	predicted protein [Populus trichocarpa]	1.0	0.990	0.657	1e-159
224100951	421	predicted protein [Populus trichocarpa]	1.0	0.995	0.660	1e-159
363807308	419	uncharacterized protein LOC100787003 [Gl	0.997	0.997	0.647	1e-156
255575072	420	amino acid binding protein, putative [Ri	0.997	0.995	0.636	1e-154

>gi|224054817|ref|XP_002298369.1| predicted protein [Populus trichocarpa] gi|222845627|gb|EEE83174.1| predicted protein [Populus trichocarpa]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/419 (79%), Positives = 381/419 (90%), Gaps = 2/419 (0%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           M VP+DD VLI+KGK+ G+PHVITVNCPDKTGL CDI  +ILD+GLYITKGD+STDG WC
Sbjct: 1   MEVPSDDAVLIEKGKKAGDPHVITVNCPDKTGLACDIFHVILDYGLYITKGDVSTDGKWC 60

Query: 61  YIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKG 120
           YIVLWVVPHS SIIRWT+LKNRL+  CPSCSVSFY+NQ  ++ +C PVYLLK F LDRKG
Sbjct: 61  YIVLWVVPHSRSIIRWTHLKNRLLSVCPSCSVSFYWNQQQSK-SC-PVYLLKFFSLDRKG 118

Query: 121 LLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180
           LLHDV QVLCELEL+IQRVKVTTTPDGRVLDLFF+TD  ELLHTK+RQDETCEQLHAVLG
Sbjct: 119 LLHDVNQVLCELELTIQRVKVTTTPDGRVLDLFFVTDKLELLHTKQRQDETCEQLHAVLG 178

Query: 181 ESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVV 240
           ESCISCEL+LAGPE +C QG++SLSPV+A+ELF  E+SDKE   +ALSPDM KLK+ +V+
Sbjct: 179 ESCISCELRLAGPEYECLQGMSSLSPVIADELFHCEISDKEIHSRALSPDMMKLKRTDVM 238

Query: 241 VDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKD 300
           +DNSLSPAHTLLQ+HCVDHKGLLYD+MRTLKDCN++I+YGRFS  + G+RDLDLFIQQKD
Sbjct: 239 IDNSLSPAHTLLQVHCVDHKGLLYDVMRTLKDCNIQIAYGRFSLVTNGHRDLDLFIQQKD 298

Query: 301 GKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTL 360
           GKKIVDPEKQSA+C RLK+EMLHPLRV+IANRGPDTELLVANPVEL GKGRPRVFYD+T 
Sbjct: 299 GKKIVDPEKQSALCFRLKVEMLHPLRVVIANRGPDTELLVANPVELSGKGRPRVFYDITH 358

Query: 361 ALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
           ALK LGIC+FSA IGRYSTS+REWEIYRFLL+ENC+FQLS+M+AR QIVD+VRR LMGW
Sbjct: 359 ALKALGICIFSAEIGRYSTSDREWEIYRFLLEENCEFQLSNMMARNQIVDKVRRTLMGW 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435020|ref|XP_002284171.1| PREDICTED: uncharacterized protein LOC100262189 [Vitis vinifera] gi|297746113|emb|CBI16169.3| unnamed protein product [Vitis vinifera]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/420 (82%), Positives = 382/420 (90%), Gaps = 1/420 (0%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           M V NDDVVLIQKG + GEP VITVNCPDKTGLGCDICR IL+FGLYITKGDISTDGIWC
Sbjct: 1   MIVLNDDVVLIQKGTKLGEPCVITVNCPDKTGLGCDICRTILNFGLYITKGDISTDGIWC 60

Query: 61  YIVLWVVPHSSS-IIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRK 119
           YIVLWV+PHSSS IIRW+NLK+RL+  CP CSVS+ FNQ S     SPVYLLK FCLDRK
Sbjct: 61  YIVLWVIPHSSSHIIRWSNLKDRLISICPPCSVSYCFNQQSDCTAPSPVYLLKFFCLDRK 120

Query: 120 GLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179
           GLLHDVTQVL ELEL+IQRVKVTTTPDGRVLDLFFITDN ELLHTKKRQD+T EQL+AVL
Sbjct: 121 GLLHDVTQVLSELELTIQRVKVTTTPDGRVLDLFFITDNMELLHTKKRQDDTLEQLYAVL 180

Query: 180 GESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANV 239
           GESCISCELQLAGPE + HQ V+SLSP +AEELFR ELSDKE+  QALSPDMT LKKA+V
Sbjct: 181 GESCISCELQLAGPEYENHQCVSSLSPGIAEELFRCELSDKESHSQALSPDMTILKKASV 240

Query: 240 VVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQK 299
           +VDNSLSPAHTLLQI+CVDHKGL+YDI+RTLKDCN+KISYGR S N++GYRDLDLFIQQK
Sbjct: 241 IVDNSLSPAHTLLQIYCVDHKGLVYDILRTLKDCNIKISYGRLSQNTKGYRDLDLFIQQK 300

Query: 300 DGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVT 359
           DGKKIVDPEKQSA+CSRLK+EMLHPLRV+I+NRGPDTELLVANPVEL GKGRPRVF+D T
Sbjct: 301 DGKKIVDPEKQSALCSRLKVEMLHPLRVVISNRGPDTELLVANPVELSGKGRPRVFFDAT 360

Query: 360 LALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
           LALK+LGIC+FSA IGR+STS+REWE+Y+FLL+ENC+FQL +MV R QIVDR+RR LMGW
Sbjct: 361 LALKMLGICIFSAEIGRHSTSDREWEVYKFLLEENCEFQLLNMVGRNQIVDRLRRILMGW 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558203|ref|XP_003547397.1| PREDICTED: uncharacterized protein LOC100793459 [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/412 (76%), Positives = 355/412 (86%), Gaps = 5/412 (1%)

Query: 11  IQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHS 70
           IQ+  +PG+P +ITVNCPDKTGL CDICRIILDFGL I KGD+STDG+WCYIVLWV+P+S
Sbjct: 15  IQQPNKPGDPFIITVNCPDKTGLACDICRIILDFGLCIAKGDVSTDGVWCYIVLWVIPYS 74

Query: 71  SSI---IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQ 127
             +     +  LK RL   CP C  SFY  Q  +R   SPVYLLK  CLDRKGLLHDVT+
Sbjct: 75  VLLPMSCSYLILKERLQKICPPCLASFYVIQQPSRS--SPVYLLKFCCLDRKGLLHDVTK 132

Query: 128 VLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCE 187
           VL ELEL+IQ+VKVTTTPDGRVLDLFF+TDN+ELLHT+ RQDETCE+L+AVL +SCISCE
Sbjct: 133 VLSELELTIQKVKVTTTPDGRVLDLFFVTDNKELLHTRNRQDETCERLNAVLRDSCISCE 192

Query: 188 LQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSP 247
           LQLAGPE + +QG++SLSP +AEELFR ELSD E R QALSPDMTKLKK NV +DNSLSP
Sbjct: 193 LQLAGPEYEYNQGISSLSPALAEELFRCELSDNEVRAQALSPDMTKLKKTNVTMDNSLSP 252

Query: 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDP 307
           AHTL+QI C DHKGLLYDIMRTLKD NMKISYGRFSPNS GYRDLD+FIQQKDGKKI+DP
Sbjct: 253 AHTLVQIRCADHKGLLYDIMRTLKDLNMKISYGRFSPNSMGYRDLDIFIQQKDGKKILDP 312

Query: 308 EKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGI 367
           EKQSA+CSRLK EMLHPLRVIIANRGPDTELLVANPVEL G GRPRVFYDVT ALK +GI
Sbjct: 313 EKQSALCSRLKQEMLHPLRVIIANRGPDTELLVANPVELSGMGRPRVFYDVTFALKTVGI 372

Query: 368 CVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
           CVFSA +GR+STSEREWE+YRFLLDENC+FQL+ + AR +IV+RVRR LMGW
Sbjct: 373 CVFSAEVGRHSTSEREWEVYRFLLDENCEFQLTGVAARNKIVNRVRRTLMGW 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454137|ref|XP_003597349.1| hypothetical protein MTR_2g096640 [Medicago truncatula] gi|355486397|gb|AES67600.1| hypothetical protein MTR_2g096640 [Medicago truncatula]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/417 (74%), Positives = 351/417 (84%), Gaps = 4/417 (0%)

Query: 5   NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVL 64
           +DD V IQ G +PG+P +ITVNCPDKTGL CDICR IL FGL I KGD+STDG+WCYIVL
Sbjct: 7   DDDSVQIQLGNKPGDPFIITVNCPDKTGLACDICRFILHFGLCILKGDVSTDGVWCYIVL 66

Query: 65  WVVPHSSSIIR--WTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLL 122
           WV+P S  + R  ++ LK+RL   CP C  SFY  Q  T  T SPVYLLK  CLDRKGLL
Sbjct: 67  WVIPQSILLPRMSYSYLKDRLQAICPPCVASFYLVQKPT--TSSPVYLLKFCCLDRKGLL 124

Query: 123 HDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGES 182
           HDVT+VLCELEL+IQRVKVTTTPDG+VLDLFF+TDN ELLHT+KRQ+ETCE+L+AVLG+S
Sbjct: 125 HDVTKVLCELELTIQRVKVTTTPDGKVLDLFFVTDNMELLHTRKRQNETCERLNAVLGDS 184

Query: 183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVD 242
           CI CELQLAGPE + +QG++SLSPV+A ELF+ ELSD + R QALSPDM KLKKAN  +D
Sbjct: 185 CIKCELQLAGPEYEHNQGISSLSPVLANELFQCELSDNDVRSQALSPDMKKLKKANAALD 244

Query: 243 NSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGK 302
           NSLS AHTLLQI C DHKGLLYDIMRTLKD N KISYGRF PN  GYRDLD+FIQQKDGK
Sbjct: 245 NSLSQAHTLLQIQCADHKGLLYDIMRTLKDMNFKISYGRFLPNVMGYRDLDIFIQQKDGK 304

Query: 303 KIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLAL 362
           KI+DPEKQ+A+CSRLK+EMLHPLRV IA+RGPDTELLVANPVEL G GRPRVFYDVT AL
Sbjct: 305 KILDPEKQNALCSRLKLEMLHPLRVTIADRGPDTELLVANPVELSGNGRPRVFYDVTFAL 364

Query: 363 KVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
           K LGIC+FSA +GRY  SE EWE+YRFLLDENC+FQL+ + AR QIV RVRR LMGW
Sbjct: 365 KTLGICIFSAEVGRYLASEHEWEVYRFLLDENCEFQLTGVAARNQIVSRVRRTLMGW 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815750|ref|XP_002875758.1| hypothetical protein ARALYDRAFT_323253 [Arabidopsis lyrata subsp. lyrata] gi|297321596|gb|EFH52017.1| hypothetical protein ARALYDRAFT_323253 [Arabidopsis lyrata subsp. lyrata]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/407 (70%), Positives = 329/407 (80%), Gaps = 26/407 (6%)

Query: 14  GKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSI 73
           GK+ G+ HVITVNCPD+TGLGCDICRIILDFGLYITKGD++TDG+WCYIVLWVVPH  ++
Sbjct: 2   GKKIGDAHVITVNCPDRTGLGCDICRIILDFGLYITKGDVTTDGVWCYIVLWVVPHYDTL 61

Query: 74  -IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCEL 132
            +RW++LKN+L+  CPSCS  F  N +S  P  +PVYLLK FCLDR GLLHDVTQVL EL
Sbjct: 62  RLRWSHLKNQLVSVCPSCSTYFVLNLMSPCPASTPVYLLKFFCLDRNGLLHDVTQVLTEL 121

Query: 133 ELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAG 192
           ELSIQ VKVTTTPDGRVLDLFFITDN +LLHT+KRQ+ET  +  +VLGESCISCELQLAG
Sbjct: 122 ELSIQTVKVTTTPDGRVLDLFFITDNMDLLHTEKRQEETRGKFRSVLGESCISCELQLAG 181

Query: 193 PECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLL 252
           PE +CHQ V                         LS DMTKLK  +V  DNSLSPA+TLL
Sbjct: 182 PEYECHQNV-------------------------LSDDMTKLKNVSVTFDNSLSPANTLL 216

Query: 253 QIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSA 312
           QI CVDH+GLLYD++RTLKD ++KISYGRFSP +QG+ DLDLFIQ KDG KIVD +KQ++
Sbjct: 217 QIQCVDHRGLLYDVLRTLKDFDIKISYGRFSPQTQGHWDLDLFIQLKDGNKIVDLDKQNS 276

Query: 313 ICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSA 372
           +CSRLK EMLHPLRVII NRGPD ELLVANPVEL GKGRPRVFYDVTL+LKVLGIC+FSA
Sbjct: 277 LCSRLKAEMLHPLRVIITNRGPDAELLVANPVELSGKGRPRVFYDVTLSLKVLGICIFSA 336

Query: 373 AIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
            I RY+ S REWE+YRFLLDENC FQL S  AR +IV++VRR LMGW
Sbjct: 337 EIRRYTASGREWEVYRFLLDENCLFQLGSASARNEIVNKVRRTLMGW 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449577|ref|XP_002283917.1| PREDICTED: uncharacterized protein LOC100256399 [Vitis vinifera] gi|296086260|emb|CBI31701.3| unnamed protein product [Vitis vinifera]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/421 (66%), Positives = 331/421 (78%), Gaps = 11/421 (2%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           MG+  DD VLIQKG +PGEP  IT+NCPDK GLGCD+CRIIL+FGL I +GD STDG WC
Sbjct: 1   MGIFCDDAVLIQKGNKPGEPCSITINCPDKAGLGCDLCRIILEFGLCIARGDFSTDGRWC 60

Query: 61  YIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQ-LSTRPTCSPVYLLKLFCLDR 118
           YIV   VP  SS+ I W +LKNRL+  CPS   S+ FNQ   + P  SPVY+LKLFCLDR
Sbjct: 61  YIVFSFVPCPSSLKIDWESLKNRLLSACPSPLFSYCFNQQYGSSP--SPVYMLKLFCLDR 118

Query: 119 KGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178
            GLLHDVT+VL ELE +I+RVKV TTPDGRVLDLFFITD  ELLHTKKRQD+TC +L AV
Sbjct: 119 NGLLHDVTKVLSELEFTIERVKVMTTPDGRVLDLFFITDGMELLHTKKRQDDTCARLLAV 178

Query: 179 LGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKAN 238
           LGE  + CE+QLAGPE    QG +SLSP +AEELF  EL D ++       +MTKL+   
Sbjct: 179 LGEFNVICEIQLAGPEYRSQQGCSSLSPEIAEELFGSELLDNKS-------NMTKLENGT 231

Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQ 298
           + VDN LSPAHTLLQI C+D KGL YDIMRT KDCN++I+YGRF+P+ +GYR++DLFIQ+
Sbjct: 232 ITVDNFLSPAHTLLQIQCLDQKGLFYDIMRTSKDCNIQIAYGRFNPSVKGYRNMDLFIQK 291

Query: 299 KDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDV 358
            DGKKI+DPE Q+++CSRLK EMLHPLRV I NRGPD ELLVANPVEL GKGRPRVFYDV
Sbjct: 292 TDGKKIIDPEYQASLCSRLKEEMLHPLRVTITNRGPDAELLVANPVELSGKGRPRVFYDV 351

Query: 359 TLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMG 418
           T  LK LGIC+FS  I R+STS REWE+YRF L+E+ +F L+S  +R QIVDRV+R LMG
Sbjct: 352 TCTLKTLGICIFSGEIVRHSTSNREWEVYRFRLEESVEFPLTSSRSRSQIVDRVKRTLMG 411

Query: 419 W 419
           W
Sbjct: 412 W 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109552|ref|XP_002315234.1| predicted protein [Populus trichocarpa] gi|222864274|gb|EEF01405.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/423 (65%), Positives = 334/423 (78%), Gaps = 4/423 (0%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           MG+P DDVVLIQ+G  P +P ++TVNCPDK+GLGCD+CRIIL+FGL+IT+ D  TDG WC
Sbjct: 1   MGIPADDVVLIQQGNSPHDPTIVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWC 60

Query: 61  YIVLWVVP-HSSSIIR--WTNLKNRLMLECPSCSVSFYFNQLSTRPTCSP-VYLLKLFCL 116
           YIVLWVV    S+++R  W +LKNRL+   P C    Y++Q     + +P VYLLK  C+
Sbjct: 61  YIVLWVVQLQHSNLLRLDWDSLKNRLLRVSPPCLTPLYYDQKLNGSSAAPSVYLLKFCCV 120

Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176
           DRKGLLHDVT+VL ELE +IQR+KV TTPDG+V+DLFFITD RELLHTKKR+D+TC  L+
Sbjct: 121 DRKGLLHDVTEVLTELEFTIQRLKVMTTPDGKVVDLFFITDGRELLHTKKRRDDTCRYLY 180

Query: 177 AVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKK 236
            V  E CI CELQLAGPECD  + ++SL  VVAEELF  ELS+KE+ +QAL    T  KK
Sbjct: 181 DVFREYCIGCELQLAGPECDTQRNLSSLPLVVAEELFSCELSEKESCMQALRTATTSPKK 240

Query: 237 ANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFI 296
           A V VDN LSPAHTLLQI CVD KGL YDI+R  KD N++++YGRFS + +GYR++DLF+
Sbjct: 241 AIVTVDNLLSPAHTLLQIQCVDQKGLFYDILRISKDLNIQVAYGRFSSSIKGYRNMDLFV 300

Query: 297 QQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFY 356
           QQ DGKKI+DP+    +CSRLK EMLHPLRVII NRGPDTELLVANPVELCGKGRPRVFY
Sbjct: 301 QQTDGKKILDPKLLDNLCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFY 360

Query: 357 DVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL 416
           DVTLALK LGIC+FSA IGR+ST +R+WE+YRFLL EN +F L+S  AR Q+   +RR L
Sbjct: 361 DVTLALKKLGICIFSAEIGRHSTQDRQWEVYRFLLVENGEFPLASGQARNQMAAGIRRTL 420

Query: 417 MGW 419
           MGW
Sbjct: 421 MGW 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100951|ref|XP_002312081.1| predicted protein [Populus trichocarpa] gi|222851901|gb|EEE89448.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/421 (66%), Positives = 328/421 (77%), Gaps = 2/421 (0%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           MG+P DDVVLIQ+G    +P V+TVNCPDK+GLGCD+CRIIL+FGL+IT+ D  TDG WC
Sbjct: 1   MGIPADDVVLIQQGSGSNDPTVVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWC 60

Query: 61  YIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSP-VYLLKLFCLDR 118
           YIV WVV  S+S+ + W +LKNRL++  P C    Y++      T +P VYLLK  C+DR
Sbjct: 61  YIVFWVVQRSNSLRLDWDSLKNRLLIVSPPCLAPLYYDHKLNGSTAAPSVYLLKFCCVDR 120

Query: 119 KGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178
           KGLLHD+T+VL ELE +IQR+KV TTPD +V+DLFFITD RELLHTK+R+D TC  L  V
Sbjct: 121 KGLLHDITEVLTELEFTIQRLKVMTTPDEKVVDLFFITDGRELLHTKERRDNTCGYLCDV 180

Query: 179 LGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKAN 238
             E CISCELQLAGPEC+  +  +SL   VAEELF  ELS+KE+  QAL    T  KKA 
Sbjct: 181 FKEYCISCELQLAGPECENQRTFSSLPMAVAEELFSCELSEKESCTQALGTATTPPKKAI 240

Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQ 298
           V VDN LSPAHTLLQI CVD KGL YDI+RT KD N++++YGRFS + +GY ++DL I+Q
Sbjct: 241 VTVDNLLSPAHTLLQIQCVDQKGLFYDILRTSKDLNIQVAYGRFSSSIKGYHNMDLLIRQ 300

Query: 299 KDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDV 358
            DGKKIVDPE  +  CSRLK EMLHPLRVII NRGPDTELLVANPVELCGKGRPRVFYDV
Sbjct: 301 TDGKKIVDPELLANTCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFYDV 360

Query: 359 TLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMG 418
           TL LK LGIC+FSA IGR+ST +R+WE+YRFLLDENC   L+S  AR QIVDR+RR LMG
Sbjct: 361 TLTLKKLGICIFSAEIGRHSTQDRQWEVYRFLLDENCDVPLASSQARNQIVDRIRRTLMG 420

Query: 419 W 419
           W
Sbjct: 421 W 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807308|ref|NP_001242111.1| uncharacterized protein LOC100787003 [Glycine max] gi|255636202|gb|ACU18442.1| unknown [Glycine max]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/420 (64%), Positives = 325/420 (77%), Gaps = 2/420 (0%)

Query: 1   MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
           MG+P DDVV+IQ+GK   EP ++TVNCPDK GLGCD+CRIIL+FGL IT+ DISTDG WC
Sbjct: 1   MGIPWDDVVVIQQGKDHNEPCIVTVNCPDKAGLGCDLCRIILEFGLRITRADISTDGRWC 60

Query: 61  YIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRK 119
           YIV WV+ H +S+ + W +LK RL+  CPSC +S++FNQ ST P+  P+YL K++C+D+K
Sbjct: 61  YIVYWVLAHPASLNVDWESLKTRLLSACPSCLLSYHFNQHSTSPSPPPIYLSKVWCVDQK 120

Query: 120 GLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179
           GLLHD+ ++LC LEL IQRVK   TPDGRVLD+FFITD  ELLHTKKRQD  CE L   L
Sbjct: 121 GLLHDINEILCNLELIIQRVKAMPTPDGRVLDMFFITDGMELLHTKKRQDYVCEYLMDAL 180

Query: 180 GESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANV 239
           GE CIS ELQLAGPE    QG +SL P  AEELF  EL DK + L  LS DMT LK   V
Sbjct: 181 GERCISSELQLAGPEYGHLQGFSSLPPAFAEELFSSELLDKLS-LHPLSQDMTTLKTPTV 239

Query: 240 VVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQK 299
            VDNSLSP HTLLQI CVD KGL YDIMR  KD ++K+++GRFS + +G+R++DLF+Q  
Sbjct: 240 TVDNSLSPVHTLLQIQCVDQKGLCYDIMRISKDSDIKVAFGRFSSSVKGFRNIDLFVQHN 299

Query: 300 DGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVT 359
           DGKKI+DPE Q  +CS LK EMLHPLRV I NRGPDTELLVANPVEL GKGRPRVFYDVT
Sbjct: 300 DGKKIIDPESQKTLCSCLKEEMLHPLRVTIVNRGPDTELLVANPVELSGKGRPRVFYDVT 359

Query: 360 LALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
           L LK L + +FSA + R+ST ER+WE++RFLL+E+  F L+   AR QIVD+VRR LMGW
Sbjct: 360 LTLKALRVGIFSAEVVRHSTQERQWEVHRFLLEESRDFPLTRSQARTQIVDKVRRTLMGW 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575072|ref|XP_002528441.1| amino acid binding protein, putative [Ricinus communis] gi|223532117|gb|EEF33924.1| amino acid binding protein, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/421 (63%), Positives = 329/421 (78%), Gaps = 3/421 (0%)

Query: 1   MGVPN-DDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIW 59
           MG+P+ DDVVLI+  K  G+P V+TVNCPD+ GLGCD+CRIIL+FGL I++ D STDG W
Sbjct: 1   MGMPSSDDVVLIEPAKNSGDPTVVTVNCPDQAGLGCDLCRIILEFGLSISRADFSTDGRW 60

Query: 60  CYIVLWVVPHSSS-IIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDR 118
           CYIV WVVPHS+S  + W +LKNRL    P C   FYF+Q S   +   +YLLK   +DR
Sbjct: 61  CYIVFWVVPHSTSHKVNWDSLKNRLSCASPPCLGPFYFDQKSNVTSVPSLYLLKFCFVDR 120

Query: 119 KGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178
           KGLLHDV ++L ELE +IQRVKV TTPDG+V+DLFFITD  +LLHT+KR+ +TC  L +V
Sbjct: 121 KGLLHDVAKILTELEFTIQRVKVMTTPDGKVVDLFFITDGLDLLHTEKRRSDTCRHLASV 180

Query: 179 LGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKAN 238
             E CISCELQLAGPE +  Q  +SL   +AEELF  E  +++T  QAL  D T   KA 
Sbjct: 181 FKECCISCELQLAGPEYESLQAFSSLPLPIAEELFSCEQLEEKTCSQALCTD-TIADKAT 239

Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQ 298
           V VDN++SPAHTLLQ+ C+D KGL YDI+RT KDCN++++YGRFS + +GYR++DLFIQQ
Sbjct: 240 VTVDNNMSPAHTLLQLKCIDQKGLFYDILRTSKDCNIRVAYGRFSSSLKGYRNMDLFIQQ 299

Query: 299 KDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDV 358
            DGKKI+DP+ Q  +CSRLK EML P RVIIANRGPDTELLVANPVEL GKGRPRVFYDV
Sbjct: 300 TDGKKIMDPKHQLMLCSRLKAEMLRPFRVIIANRGPDTELLVANPVELSGKGRPRVFYDV 359

Query: 359 TLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMG 418
           TLALK LGIC+FSA I R+ST +++WE+YRFLL+ENC+  L+S  AR+QIVDRV++ LMG
Sbjct: 360 TLALKTLGICIFSAEIARHSTQDQQWEVYRFLLNENCEVPLASAQARKQIVDRVKKTLMG 419

Query: 419 W 419
           W
Sbjct: 420 W 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.978	0.997	0.633	1.1e-137
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.961	0.982	0.510	4.3e-109
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.785	0.726	0.228	9e-09
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.715	0.680	0.223	2.4e-08
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.670	0.617	0.228	4.2e-08
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.673	0.651	0.218	6.4e-07
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.334	0.311	0.275	2.4e-06
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.183	0.168	0.313	0.00018
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.343	0.301	0.259	0.00073

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
 Identities = 266/420 (63%), Positives = 320/420 (76%)

Query:     1 MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
             MG+ NDD VLI+ GK  G+P V+TVNCPD++GLG  +CRIIL+FGL IT+ D STDG WC
Sbjct:     1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query:    61 YIVLWVVPH-SSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRK 119
             YIV WV P  SS  I W +LKNRL+  CPSC  SFYF   S       +YLLK FC DRK
Sbjct:    61 YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRK 120

Query:   120 GLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179
             GLLHDVT+VL ELE +IQRVKV TTPDGRVLD+FFITD  +LLHTK+RQ +TC+ L AVL
Sbjct:   121 GLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVL 180

Query:   180 GESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANV 239
             GE  +SCEL+LAGPE +  Q  +SL P+ A+ELF  +  D       +S   +   KA +
Sbjct:   181 GEHGVSCELELAGPELESVQRFSSLPPLAADELFGPDGFD-------ISGSSSN--KAVL 231

Query:   240 VVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQK 299
              VDN LSPAHTLLQI CVD KGL YDI+RT KDC++ I+YGRFS   +GYR+L+LF++  
Sbjct:   232 TVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGT 291

Query:   300 DGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVT 359
             DG KI+DP+ Q+  C+RLK EM+ PLRVII NRGPDTELLVANPVEL GKGRPRVFYDVT
Sbjct:   292 DGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVT 351

Query:   360 LALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419
             LALK LGIC+FSA IGR+ST +R+WE+YRFLLDE+ +F L+S+ AR Q+VDRV + LMGW
Sbjct:   352 LALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 217/425 (51%), Positives = 296/425 (69%)

Query:     1 MGVPNDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWC 60
             MG+ +DDVV+I + ++ G+P VIT+NCPDKTGLGCD+CRI+L FGL I +GD+STDG WC
Sbjct:     1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWC 60

Query:    61 YIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF-----YFNQLSTRPTCSP-VYLLKLF 114
             Y+V WV+   ++  RW  LK RL+   PS S +F     Y +   ++P   P ++LLKL 
Sbjct:    61 YLVFWVIGKPNT--RWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLA 118

Query:   115 CLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQ 174
             C DR GLL+DVT+VL +LE++I++VK++TTPDG+V+DLFF+TD RELL T KR++E  E 
Sbjct:   119 CSDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVKRRNEVYEY 178

Query:   175 LHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKL 234
             L   +G+S IS +++L GPE        S S  VAE LF  ++S +       S  +   
Sbjct:   179 LRDAIGDSMISYDIELVGPEITA----CSTSSSVAETLFSSDVSGEH------SSGLHTS 228

Query:   235 KKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDL 294
                ++ VDNSLS AHTL+ I C DHKGLLYDIMRT KD N++ISYGRF+       ++DL
Sbjct:   229 SNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDL 288

Query:   295 FIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRV 354
             FI Q DG+KI+D  K +A+ +RL+ E+  PLRV++ NRGPDTELLV NPVEL GKGRP+V
Sbjct:   289 FIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQV 348

Query:   355 FYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414
             F+D+ LALK +  C+FSA IGR+ T +REWE+Y+ L++E    + S  + R +I + V +
Sbjct:   349 FHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINE----EDSLPIPRSKIEEEVWK 404

Query:   415 ALMGW 419
              LMGW
Sbjct:   405 TLMGW 409

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 83/363 (22%), Positives = 152/363 (41%)

Query:    22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
             ++ V+  +K G+  ++ +++ D  L ITK  IS+DG W   V  V     + +  T+ K 
Sbjct:    37 LVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVTDQQGNKV--TDSKT 94

Query:    82 RLMLEC---PSCSVSFYFNQLSTRP----TCSPVYLLKLFCLDRKGLLHDVTQVLCELEL 134
                +E    P    S   N    +     +      +++   DR GLL +V+ VL +L +
Sbjct:    95 IDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNI 154

Query:   135 SIQRVKVTTTPDGRVLDLFFITDNR--ELLHTKKRQDETCEQLHAVLGESCISCELQLAG 192
             ++   +  T  + R+  + ++ DN     +   +R     EQL+ VL      CE Q   
Sbjct:   155 NVVAAEAWTH-NRRIACVLYVNDNATSRAVDDPERLSSMEEQLNNVLR----GCEEQ--- 206

Query:   193 PECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLK-KANVVVDNSLSPAHTL 251
              E      ++  S  V   L +   +D++        D      +  + V++     +++
Sbjct:   207 DEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDDSASCGFEPKITVEHCEEKGYSV 266

Query:   252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQS 311
             + + C D   L++DI+ TL D    + +   S +S  +   + FI+ KDG  + D E + 
Sbjct:   267 INVSCEDRPKLMFDIVCTLTDMQYIVFHATIS-SSGSHASQEYFIRHKDGCTL-DTEGE- 323

Query:   312 AICSRLKMEMLHPLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFS 371
                   K  ++  L   I  R  +   L     ELC K R  +  +VT  L+  G+ V  
Sbjct:   324 ------KERVVKCLEAAIHRRVSEGWSL-----ELCAKDRVGLLSEVTRILREHGLSVSR 372

Query:   372 AAI 374
             A +
Sbjct:   373 AGV 375

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 73/326 (22%), Positives = 142/326 (43%)

Query:    22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
             ++ V+   + G+  +  +I+ D  L I K  IS+DG W   V  V       +    L +
Sbjct:    34 IVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVTD-----LNGNKLND 88

Query:    82 RLMLECPSCSV-SFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVK 140
             + +L     S+ + Y+ +       + +  L+L   DR GLL ++  VL +L   +   K
Sbjct:    89 QSVLRYIEQSIETVYYGE---NIEVNGLTALELTGTDRIGLLSEMFAVLSDLNCDVVDAK 145

Query:   141 VTTTPDGRVLDLFFITD--NRELLHTKKRQDETCEQLHAVL-GESCISCELQLAGPECDC 197
             + T  +GRV  + ++ D  +   +    R  +   +L  VL G++    ++  A   C  
Sbjct:   146 LWTH-NGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLNGDN----DVNSAAKTCVT 200

Query:   198 HQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCV 257
                +  +   + + +F     ++ ++    SP +       V V N     ++++ +HC 
Sbjct:   201 VDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVV------VTVQNWAERGYSVVNVHCR 254

Query:   258 DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIV-DPEKQSAI-CS 315
             D   LL+D++ TL D    + +   +  ++    L+ +I+ KDG  I  + E+Q  I C 
Sbjct:   255 DRTKLLFDVVCTLTDMEYAVFHATIN-TAEDQAHLEFYIRHKDGSPISSEAERQRVIQCL 313

Query:   316 RLKMEMLHPLRVIIANRGPDTELLVA 341
                +E      V +  R PD + L+A
Sbjct:   314 EAAVERRALEGVRLELRHPDKQGLLA 339

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 68/298 (22%), Positives = 131/298 (43%)

Query:    22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
             VI V+  ++ G+  ++ +I+ D  L ITK  IS+DG W   V  V     + +    + +
Sbjct:    39 VIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLD 98

Query:    82 RLMLEC-PSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVK 140
              +     P    S     +   P+     +++L   DR GLL +++ VL  L+ S+   +
Sbjct:    99 YIQKSLGPEACFSTSMRSVGVIPSTDST-VIELTGCDRPGLLSELSAVLTHLKCSVLNAE 157

Query:   141 VTTTPDGRVLDLFFITDNREL--LHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCH 198
             + T  + R   +  +TD+     +   +R       L  VL  S    E +      + H
Sbjct:   158 IWTH-NTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVLKGSNTPREAKTVVSHGEVH 216

Query:   199 QGVTSLSPVVAEEL-FRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCV 257
                  L  ++ E+  +   L D ++ +Q       + ++ +V VDN L   ++++ + C 
Sbjct:   217 TD-RRLHQMMFEDRDYEHRLVDDDSSIQ------DERQRPDVCVDNWLDKDYSVVTVRCK 269

Query:   258 DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDL-DLFIQQKDGKKIV-DPEKQSAI 313
             D   LL+D + TL D    + +G  S +++G     + +++  DG  +  + EKQ  I
Sbjct:   270 DRPKLLFDTVCTLTDMQYVVFHG--SVDTEGTEAFQEYYVRHIDGSPVKSEAEKQRVI 325

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 66/302 (21%), Positives = 127/302 (42%)

Query:    22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
             VI V+  +K G   ++ +++ D  L I K  IS+DG W   V  V+    + IR T + +
Sbjct:    30 VIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVIDQDGNKIRDTQVLD 89

Query:    82 RLMLECPSCSVSFYFNQLSTRPTCSPV--YL-LKLFCLDRKGLLHDVTQVLCELELSIQR 138
              +     S +  ++   L +     P   Y  ++L   DR GLL +V+ VL +L  ++  
Sbjct:    90 YIQKRIES-NAGWFIPPLRSSVGVMPTDEYTSIELAGTDRPGLLSEVSAVLTDLHCNVVN 148

Query:   139 VKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCH 198
              ++ T  + R   +  +TDN    H+          +  +L      C +          
Sbjct:   149 AEIWTH-NTRAAAVIHVTDNST--HSAITDPIRLSTIKELL------CNVVRTNSGSRAA 199

Query:   199 QGVTSLSPVVAEE-LFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCV 257
             + V S S    E  L +    D++   + +    T   + +V + N +   +T++ +   
Sbjct:   200 KTVFSCSDTHRERRLHQIMFDDRD--YEGVKRARTSASRPSVTLMN-IEKDYTVVTMRSK 256

Query:   258 DHKGLLYDIMRTLKDCNMKISYGRFSPNS-QGYRDLDLFIQQKDGKKIVDPEKQSAICSR 316
             D   L++D++ TL D    + +G  S    + Y++   +I+  DG  I    +Q  +   
Sbjct:   257 DRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEF--YIRHVDGLPINSEAEQERVIQC 314

Query:   317 LK 318
             L+
Sbjct:   315 LE 316

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 41/149 (27%), Positives = 65/149 (43%)

Query:     9 VLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVP 68
             V+I  G  P    V+ ++     G+  +  +++ D  L+I K  IS+DG W   V  V  
Sbjct:    22 VVIDNGVCPNST-VVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHVSD 80

Query:    69 HSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQV 128
              +   +   NL     +E  S   S Y     T      +  L+L   DR GLL +V  V
Sbjct:    81 LNGDKLTDENLIR--YIE-KSIETSHY---CKTEGYTG-LTALELTGTDRVGLLSEVFAV 133

Query:   129 LCELELSIQRVKVTTTPDGRVLDLFFITD 157
             L +LE  +   K  T  +GR+  + ++ D
Sbjct:   134 LADLECDVVEAKAWTH-NGRIASMIYVKD 161

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 26/83 (31%), Positives = 43/83 (51%)

Query:   105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHT 164
             C  V ++K+   ++ G+L +V QVL EL L+I++  +++   G  +D+F +TD       
Sbjct:    34 CKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSD-GGWFMDVFNVTDQ----DG 88

Query:   165 KKRQDE-TCEQLHAVLGESCISC 186
              K  DE   E +   LG    SC
Sbjct:    89 NKVTDEIVLEYIRKSLGPDESSC 111

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00073, P = 0.00073
 Identities = 41/158 (25%), Positives = 73/158 (46%)

Query:   233 KLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDL 292
             ++    V VDN   P  TL+++   +  G+L D+++ L D ++ IS    S + + + D+
Sbjct:    20 RINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDV 79

Query:   293 DLFIQQKDGKKIVDPEK----QSAICSR----LKMEMLHPLRVIIANRGPDTELLVANPV 344
                +  + G K+ D       Q AICS     +  EM   L+  +  R   TE       
Sbjct:    80 -FHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKREVQQRHVSTE---HTAF 135

Query:   345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSER 382
             E+ G  RP +  +++  L  +G C  +AA+  ++  ER
Sbjct:   136 EITGINRPGLLSEISAVLSDIG-CHVTAAVA-WTHHER 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      419       419   0.00082  118 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  281 KB (2146 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.48u 0.13s 38.61t   Elapsed:  00:00:01
  Total cpu time:  38.48u 0.13s 38.61t   Elapsed:  00:00:01
  Start:  Mon May 20 15:56:09 2013   End:  Mon May 20 15:56:10 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0693 hypothetical protein (417 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	419
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-40
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	2e-37
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	3e-33
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	2e-32
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	6e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-10
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-08
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-07
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	3e-07
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	3e-07
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	5e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	6e-06
pfam01842	66	pfam01842, ACT, ACT domain	1e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	3e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	3e-04
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	6e-04
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.001
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	0.003

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  137 bits (348), Expect = 2e-40
 Identities = 60/76 (78%), Positives = 69/76 (90%)

Query: 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
           +LLKLFC DRKGLLHDVT+VL ELEL+I+RVKV+TTPDGRVLDLFFITD RELLHTKKR+
Sbjct: 1   FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRR 60

Query: 169 DETCEQLHAVLGESCI 184
           +ET + L AVLG+S I
Sbjct: 61  EETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (328), Expect = 2e-37
 Identities = 52/75 (69%), Positives = 65/75 (86%)

Query: 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEK 309
           TLLQI CVD KGLLYDI+RT KDCN++ISYGRFS   +GYR++DLFI Q DGKKI+DP+K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 310 QSAICSRLKMEMLHP 324
           Q+A+C+RL+ EM+ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  119 bits (299), Expect = 3e-33
 Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)

Query: 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSS 401
           NPVEL GKGRPRVFYD+TLALK LGIC+FSA IGR+ST +R+WE+YR LL E+ + +L  
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 402 MVAREQIVDRVRRALMGW 419
              R ++VDRV + LMGW
Sbjct: 61  -RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  116 bits (293), Expect = 2e-32
 Identities = 51/68 (75%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSI-IRWTNLK 80
          VIT+NCPDKTGLGCD+CRIIL+FGL IT+GD STDG WCYIV WVVP   SI +RW  LK
Sbjct: 2  VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLK 61

Query: 81 NRLMLECP 88
          NRLM  CP
Sbjct: 62 NRLMSACP 69

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 80.2 bits (199), Expect = 6e-19
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
            +L+L  LDR GLL DVT+VL EL L+I   K+ T  + R  D+F++TD       +   
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDA----DGQPLD 55

Query: 169 DETCEQLHAVLGESC 183
            E  E L A LGE+ 
Sbjct: 56  PERQEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 69.5 bits (171), Expect = 4e-15
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
            +++++  DR GLL D+T+VL +L L+I   +++TT + R LD+F++TD+       +R 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERI 59

Query: 169 DETCEQLHAVL 179
               E L   L
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVP---HSSSIIRWTN 78
          V+ V  PD+ GL  DI R++ D GL I    IST G     V +V           R   
Sbjct: 2  VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIAR 61

Query: 79 LKNRLMLEC 87
          L+  L    
Sbjct: 62 LEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPE 308
           T+++++  D  GLL DI R L D  + I   R S  + G R LD+F +   DG+ + DPE
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRPL-DPE 57

Query: 309 KQSAICSRLKMEM 321
           + + +   L+  +
Sbjct: 58  RIARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 102 RPTCSP-VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRE 160
            PT S    +L++  LDR GLL  +  V  +L LS+   K+TT    RV D+F +TD   
Sbjct: 784 LPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF-GERVEDVFIVTDADG 842

Query: 161 LLHTKKRQDETCEQLHAVLGES 182
               +    E  + L   L E+
Sbjct: 843 ----QALNAELRQSLLQRLLEA 860

Length = 867

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 37/206 (17%)

Query: 114 FCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCE 173
           +  DR  L   V   L    LSI   ++ TT DG  LD F + +       + R+     
Sbjct: 690 YAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRG 749

Query: 174 QLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTK 233
           +L   L                        LS              +  R+         
Sbjct: 750 ELIEAL------------------------LSGKAQP--------PRRRRIPRKLRHFPI 777

Query: 234 LKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLD 293
                V +  + S   T+L++  +D  GLL  +     D  + +   +    + G R  D
Sbjct: 778 --PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI--TTFGERVED 833

Query: 294 LFI-QQKDGKKIVDPEKQSAICSRLK 318
           +FI    DG+ +    +QS +   L+
Sbjct: 834 VFIVTDADGQALNAELRQSLLQRLLE 859

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 103 PTCSPVY-LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNREL 161
            T S    ++++  LDR GLL  V + L EL LSIQ  K+TT  + +  D+F++TD    
Sbjct: 773 NTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGE-KAEDVFYVTD---- 827

Query: 162 LHTKKRQDETCEQLHAVLGES 182
           L   K  DE  ++L  VL  S
Sbjct: 828 LFGLKLTDEEEQRLLEVLAAS 848

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 37/205 (18%)

Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176
           D  GL   +         +I   ++ TT DGR LD F+I D               ++  
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD---------AFGRDEDEPR 791

Query: 177 --AVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKL 234
             A L +  I  E  L+G               + E L +     K  R   + P     
Sbjct: 792 RLARLAK-AI--EDALSG------------EVRLPEALAKRTKPKKRARAFHVPPR---- 832

Query: 235 KKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDL 294
               V +DN  S   T+++++  D  GLLYD+ R L D N+ I+    +  + G R +D+
Sbjct: 833 ----VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA--TYGERAVDV 886

Query: 295 F-IQQKDGKKIVDPEKQSAICSRLK 318
           F +    G KI +  +Q+AI   L 
Sbjct: 887 FYVTDLFGLKITNEARQAAIRRALL 911

Length = 931

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 114 FCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD-NRELLHTKKRQDETC 172
           +  DR GL   +   L +L L+I   ++ TT DG  LD F + D + E +  ++R     
Sbjct: 7   YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIR 66

Query: 173 EQLHAVL 179
           E L   L
Sbjct: 67  EALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           ++LF LDR GLL  V+QV  EL L++   K+TT  + +  D F +T+ +     ++ +  
Sbjct: 786 MELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKA 844

Query: 171 TCEQLHAVLG 180
              +L + L 
Sbjct: 845 LKSRLLSNLS 854

Length = 854

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMV 403
           VE+    RP +  D+T  L  LG+ +  A I   +T ER  +++ ++ D +   +     
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARI--STTGERALDVF-YVTDSD--GRPLDPE 57

Query: 404 AREQIVDRVRRAL 416
              ++ + +  AL
Sbjct: 58  RIARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
           L +   DR GLL  V  VL E  ++I  ++  T+ DG   D+F + D    L      ++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDL------EK 54

Query: 171 TCEQLH 176
             E L 
Sbjct: 55  LLEALE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 97  NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFI 155
           N+ S R T     ++++   DR GLL+D+T+ L +L L+I    + T   G R +D+F++
Sbjct: 837 NEASNRFT-----VIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYV 889

Query: 156 TDNREL-LHTKKRQDETCEQLHAVLGE 181
           TD   L +  + RQ      L A L E
Sbjct: 890 TDLFGLKITNEARQAAIRRALLAALAE 916

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD--NREL 161
              PV +L++   DR GLL  + ++  E +LS+Q  K+ T  + RV D+FFITD  N+ L
Sbjct: 810 AQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDADNQPL 868

Query: 162 ---LHTKKRQDETCEQL 175
                  + QD  CEQL
Sbjct: 869 SDPQLCSRLQDAICEQL 885

Length = 895

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 35/200 (17%)

Query: 113 LFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD-NRELLHTKKRQDET 171
           ++  D+ GL   V   L  L LS+   +V TT DG  LD F + D        ++   E 
Sbjct: 673 IYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732

Query: 172 CEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDM 231
            + L  VL                    G+      ++          +  RLQ  +   
Sbjct: 733 LQGLVDVL-------------------AGLAKDPDTISAR------RARRRRLQHFAV-- 765

Query: 232 TKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRD 291
                  V + N+ S   T++++  +D  GLL  + RTL++  + I   +    + G + 
Sbjct: 766 ----PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI--TTFGEKA 819

Query: 292 LDLFI-QQKDGKKIVDPEKQ 310
            D+F      G K+ D E+Q
Sbjct: 820 EDVFYVTDLFGLKLTDEEEQ 839

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
            +L++   DR GLL +V   L +  ++I+ +  +T+ D   +    +  + E L      
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDL------ 54

Query: 169 DETCEQLHAVLG 180
           +   E L  +LG
Sbjct: 55  EAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
           L+L   DR GLL DVT+V  E  L++ R +++T      +++F++TD
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRV 149
           +++  +DR GLL D+T V+ E +++I  V   T  DG  
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA 39

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
           Y+L +   DR GLL+ + +VL E  +S+   K+ T  + RV D F I  +   L   + Q
Sbjct: 787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGE-RVEDTFLIDGSG--LSDNRLQ 843

Length = 856

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 113 LFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD-NRELLHTKKRQDET 171
           ++C D+  L   V   +   +LSI   ++ T+ DG VLD F +T+ N +LL     + + 
Sbjct: 682 IYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-----EFDR 736

Query: 172 CEQLHAVLGESCISCEL 188
             QL   L ++  + +L
Sbjct: 737 RRQLEQALTKALNTNKL 753

Length = 854

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN-RELLHTKKRQ 168
            ++L  LD+ GLL  V ++  +L +S+   ++TT  + RV DLF +    R  L+ + +Q
Sbjct: 810 YMELIALDQPGLLARVGKIFADLGISLHGARITTIGE-RVEDLFILATADRRALNEELQQ 868

Length = 884

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 250 TLLQIHCVDHKGLLYDIMRTLKDCNM-----KISYGRFSPNSQGYRDLDLF-IQQKDGKK 303
           T+L++  +D  GLL D+ R L +  +     KI+       + G R  D+F +   DG+ 
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA-------TLGERAEDVFYVTDADGQP 53

Query: 304 IVDPEKQSAICSRLKMEM 321
           + DPE+Q A+ + L   +
Sbjct: 54  L-DPERQEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK05007	884	PII uridylyl-transferase; Provisional	99.93
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.93
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.89
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.89
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.87
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.81
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.77
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.77
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.75
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.68
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.68
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.66
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.65
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.64
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.63
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.61
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.59
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.57
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.49
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.47
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.46
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.46
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.41
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.32
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.25
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	99.22
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.19
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.1
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.08
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.01
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.97
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.67
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.66
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.66
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.6
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.42
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.42
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.41
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.37
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.34
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.18
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.17
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.14
COG4747	142	ACT domain-containing protein [General function pr	98.11
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.1
PRK00194	90	hypothetical protein; Validated	98.06
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.04
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.93
PRK07431	587	aspartate kinase; Provisional	97.93
PRK00194	90	hypothetical protein; Validated	97.92
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.8
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.78
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.78
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.76
COG3830	90	ACT domain-containing protein [Signal transduction	97.74
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.74
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.71
COG4747	142	ACT domain-containing protein [General function pr	97.68
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.65
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.64
COG3830	90	ACT domain-containing protein [Signal transduction	97.63
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.58
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.47
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.45
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.4
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.31
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.27
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.22
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.21
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.16
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.15
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.09
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.06
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.02
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.01
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.0
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	97.0
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.98
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.95
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.91
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.88
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.85
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.84
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.81
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.8
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.79
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.79
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.78
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.73
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.66
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.64
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.63
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.62
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.6
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.6
PRK07431	587	aspartate kinase; Provisional	96.59
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.59
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.53
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.46
PRK08577	136	hypothetical protein; Provisional	96.45
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.45
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.43
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.42
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.39
cd02116	60	ACT ACT domains are commonly involved in specifica	96.37
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.37
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.36
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.35
PRK04435	147	hypothetical protein; Provisional	96.32
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.31
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.3
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.29
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.19
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.18
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.18
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.12
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.1
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.08
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.04
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.02
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.95
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	95.93
PRK08577	136	hypothetical protein; Provisional	95.93
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.76
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.74
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.73
PRK04435	147	hypothetical protein; Provisional	95.56
PRK11899	279	prephenate dehydratase; Provisional	95.55
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.54
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.45
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	95.39
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.39
PRK07334	403	threonine dehydratase; Provisional	95.37
cd02116	60	ACT ACT domains are commonly involved in specifica	95.25
PRK06291	465	aspartate kinase; Provisional	95.05
COG1707	218	ACT domain-containing protein [General function pr	95.0
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.95
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.75
PRK06635	404	aspartate kinase; Reviewed	94.73
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.63
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.52
PRK06635	404	aspartate kinase; Reviewed	94.47
PRK08210	403	aspartate kinase I; Reviewed	94.45
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.43
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.37
PRK11899	279	prephenate dehydratase; Provisional	94.24
PLN02551	521	aspartokinase	94.05
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.0
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	93.98
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.96
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.84
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.61
PRK07334	403	threonine dehydratase; Provisional	93.59
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.56
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.45
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.45
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.4
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.37
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.99
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.97
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.83
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.76
PRK09034	454	aspartate kinase; Reviewed	92.65
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.59
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.51
PRK09181	475	aspartate kinase; Validated	92.1
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.98
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	91.96
PRK06291	465	aspartate kinase; Provisional	91.95
PRK06382	406	threonine dehydratase; Provisional	91.91
COG1707	218	ACT domain-containing protein [General function pr	91.76
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.67
PRK11898	283	prephenate dehydratase; Provisional	91.63
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.53
PRK09084	448	aspartate kinase III; Validated	91.48
PRK09034	454	aspartate kinase; Reviewed	91.24
PRK09181	475	aspartate kinase; Validated	91.24
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	91.2
PRK08210	403	aspartate kinase I; Reviewed	91.19
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	90.86
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	90.47
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	90.4
PLN02317	382	arogenate dehydratase	89.85
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.69
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.51
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	89.47
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.42
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	88.99
PLN02551	521	aspartokinase	88.46
PRK08818	370	prephenate dehydrogenase; Provisional	88.13
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	87.6
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.85
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.64
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.2
PRK06382	406	threonine dehydratase; Provisional	86.13
PRK08198	404	threonine dehydratase; Provisional	85.76
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	85.73
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.35
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.31
PRK08818	370	prephenate dehydrogenase; Provisional	84.42
PRK06349	426	homoserine dehydrogenase; Provisional	83.98
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	83.69
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.57
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	83.44
PRK06545	359	prephenate dehydrogenase; Validated	83.24
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	83.14
PRK06545	359	prephenate dehydrogenase; Validated	83.11
PRK09224	504	threonine dehydratase; Reviewed	83.1
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.47
PRK08198	404	threonine dehydratase; Provisional	82.23
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	82.09
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	81.83
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	81.57
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	81.29
PLN02550	591	threonine dehydratase	80.5
PRK12483	521	threonine dehydratase; Reviewed	80.36
COG4492	150	PheB ACT domain-containing protein [General functi	80.36
COG2150	167	Predicted regulator of amino acid metabolism, cont	80.08

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.3e-28  Score=270.37  Aligned_cols=181  Identities=22%  Similarity=0.304  Sum_probs=155.0

Q ss_pred             CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccc
Q 014754          103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  182 (419)
                      ..+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||.+.+|..++++++++|++.|.++|.+.
T Consensus       672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~  751 (854)
T PRK01759        672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN  751 (854)
T ss_pred             cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            45568999999999999999999999999999999999999889999999999999887667788999999999999765


Q ss_pred             ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754          183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL  262 (419)
Q Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL  262 (419)
                      . .    .              ..+...               . ++...+..||+|.|+|+.+..+|+|+|.+.|||||
T Consensus       752 ~-~----~--------------~~~~~~---------------~-~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL  796 (854)
T PRK01759        752 K-L----K--------------KLNLEE---------------N-HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL  796 (854)
T ss_pred             C-C----c--------------chhccc---------------c-ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence            2 0    0              000000               0 11113456899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      ||+|+++|.++|++|+.|+|+  |.|+++.|+||| +.+|.+++++++ ++|+++|.+++
T Consensus       797 L~~I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        797 LAQVSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999999  589999999999 788999997655 99999988765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=4.8e-28  Score=266.66  Aligned_cols=184  Identities=18%  Similarity=0.201  Sum_probs=157.3

Q ss_pred             CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccc
Q 014754          103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~  182 (419)
                      ..+.+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|||++.+|..++++++++|++.|.++|.+.
T Consensus       696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~  775 (884)
T PRK05007        696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS  775 (884)
T ss_pred             cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            44567999999999999999999999999999999999999989999999999999887667788999999999999765


Q ss_pred             ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754          183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL  262 (419)
Q Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL  262 (419)
                      .. .     .          ...++               +  + .+..++..||+|.|+|+.++.+|+|+|.+.|||||
T Consensus       776 ~~-~-----~----------~~~~~---------------~--~-~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGL  821 (884)
T PRK05007        776 SP-Q-----P----------PKPRR---------------L--P-AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGL  821 (884)
T ss_pred             CC-C-----c----------ccccc---------------c--c-cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence            20 0     0          00000               0  0 01113457899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      ||+|+++|.++|++|++|+|+  |.|+++.|+||| +.+|.+++ +++++.|+++|.+++..
T Consensus       822 L~~I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        822 LARVGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999  589999999999 77899998 67889999999988753

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=1.7e-25  Score=246.91  Aligned_cols=184  Identities=24%  Similarity=0.311  Sum_probs=153.0

Q ss_pred             CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHccc
Q 014754          104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       104 ~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~  182 (419)
                      .+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||++.+|..+ +++++++|++.|.++|.+.
T Consensus       664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~  743 (850)
T TIGR01693       664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL  743 (850)
T ss_pred             CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence            446899999999999999999999999999999999999889999999999999988654 4567999999999999765


Q ss_pred             ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754          183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL  262 (419)
Q Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL  262 (419)
                      . .    .  +.        ...++               +.+. .+...+.++|+|.|+|+.++.+|+|+|.|.|||||
T Consensus       744 ~-~----~--~~--------~~~~~---------------~~~~-~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGl  792 (850)
T TIGR01693       744 A-K----D--PD--------TISAR---------------RARR-RRLQHFAVPPRVTILNTASRKATIMEVRALDRPGL  792 (850)
T ss_pred             C-c----c--cc--------ccccc---------------cCCc-ccccCCCCCCeEEEccCCCCCeEEEEEEECCccHH
Confidence            2 0    0  00        00000               0000 01113456899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      |++|+++|+++|++|++|+|+  |.|+++.|+||+ +..|.++++ ++++.|+++|.+++
T Consensus       793 l~~i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       793 LARVGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999  479999999999 677999997 78899999988765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3e-25  Score=244.63  Aligned_cols=184  Identities=17%  Similarity=0.224  Sum_probs=155.8

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHcccc
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH--TKKRQDETCEQLHAVLGESC  183 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~--~~~~~~~l~~~L~~~l~~~~  183 (419)
                      .+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|..+  +++++++|++.|.++|.++.
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~  781 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD  781 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999999999999999999999988753  45789999999999997652


Q ss_pred             cccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHH
Q 014754          184 ISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLL  263 (419)
Q Consensus       184 ~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL  263 (419)
                      .     +.  .        .+.++. .                 .....+..+|.|.|+++.+.++|+|+|.+.||||||
T Consensus       782 ~-----~~--~--------~~~~~~-~-----------------~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLL  828 (895)
T PRK00275        782 D-----YP--T--------IIQRRV-P-----------------RQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLL  828 (895)
T ss_pred             c-----cc--h--------hhhhhh-h-----------------hhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHH
Confidence            0     00  0        011110 0                 001123468999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          264 YDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       264 ~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      ++|+.+|..+|+||.+|+|.|  .|+++.|+||| +.+|.++.+++++++|+++|..+|..+
T Consensus       829 a~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        829 ARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999996  59999999999 788999998888999999999888653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1e-24  Score=238.98  Aligned_cols=180  Identities=17%  Similarity=0.218  Sum_probs=151.0

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccc
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCI  184 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  184 (419)
                      ..+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|..  .++++++++.|.++|.++. 
T Consensus       687 ~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~-  763 (869)
T PRK04374        687 DNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL-  763 (869)
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-
Confidence            4478999999999999999999999999999999999999999999999999988763  4668889999999997652 


Q ss_pred             ccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHH
Q 014754          185 SCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLY  264 (419)
Q Consensus       185 ~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~  264 (419)
                      .... +.       +.  +.+                      .+...+.+||+|.|+|+.+.++|+|+|.+.||||||+
T Consensus       764 ~~~~-~~-------~~--~~~----------------------~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa  811 (869)
T PRK04374        764 QKVR-PA-------RR--AVP----------------------RQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLA  811 (869)
T ss_pred             Cccc-cc-------cc--cCc----------------------ccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHH
Confidence            0000 00       00  000                      0112345789999999999999999999999999999


Q ss_pred             HHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          265 DIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       265 ~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      +|+.+|+++|++|..|+|+|  .|+++.|+||| +.+|.+++++++ +.|+++|.+.+.
T Consensus       812 ~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        812 DVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999999999995  69999999999 788888886655 999999988774

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=237.97  Aligned_cols=174  Identities=21%  Similarity=0.197  Sum_probs=145.4

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc-ccHHHHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI-IRWTNLKN   81 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~-~~~~~l~~   81 (419)
                      .+|+++.+...+..++++|+|+++|+||||++||++|+.+|+||++|+|+|  ||+ ++|+|+|++++|.+ .+|+++++
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~i~~  753 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDA-IFDVFEVLPQDTYADGDPQRLAA  753 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCE-EEEEEEEeCCCCCChHHHHHHHH
Confidence            467777776567778999999999999999999999999999999999996  888 58999999998853 57888999


Q ss_pred             HHHhhCCCCCc--cc--c--ccc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754           82 RLMLECPSCSV--SF--Y--FNQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP  145 (419)
Q Consensus        82 ~Le~~L~~~~~--~~--~--~~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~  145 (419)
                      .|+++|.+...  ..  +  +++          ...+..+...|+|+|+++||||||++|+++|+.+|+||++|+|+|. 
T Consensus       754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-  832 (869)
T PRK04374        754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-  832 (869)
T ss_pred             HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-
Confidence            99999977432  10  0  011          1123556689999999999999999999999999999999999986 


Q ss_pred             CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          146 DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      |++++|+|||++.+|...+++..++|+++|.+.|+
T Consensus       833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999988875544444999999999874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=239.30  Aligned_cols=174  Identities=21%  Similarity=0.245  Sum_probs=147.6

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc---ccHHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI---IRWTNL   79 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~---~~~~~l   79 (419)
                      .+|.|. .++++..++++|+|+++|+||||++||++|+.+|+||++|+|+|  ||+ ++|+|+|++++|.+   .++++|
T Consensus       687 ~~p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~-alD~F~V~d~~g~~~~~~~~~~I  764 (884)
T PRK05007        687 DKPLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGM-AMDTFIVLEPDGSPLSQDRHQVI  764 (884)
T ss_pred             CCCeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCe-EEEEEEEECCCCCCCCHHHHHHH
Confidence            356666 45567779999999999999999999999999999999999987  777 58999999998865   367889


Q ss_pred             HHHHHhhCCCCCcc--cc---c----------ccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754           80 KNRLMLECPSCSVS--FY---F----------NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus        80 ~~~Le~~L~~~~~~--~~---~----------~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      ++.|+++|.+....  ..   +          +...++..+..+|+|+|.++||||||++|+++|+++|++|++|+|.| 
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T-  843 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT-  843 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence            99999998665310  00   0          01234567789999999999999999999999999999999999997 


Q ss_pred             cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcc
Q 014754          145 PDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGE  181 (419)
Q Consensus       145 ~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~  181 (419)
                      .|+++.|+|||++.+|..+++++.++|+++|..+|..
T Consensus       844 ~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        844 IGERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             cCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            6999999999999988877788889999999999854

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.5e-24  Score=238.39  Aligned_cols=172  Identities=23%  Similarity=0.264  Sum_probs=144.1

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcc---cHHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSII---RWTNL   79 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~---~~~~l   79 (419)
                      .+|.|. ..+++..++++|+|+++||||||++||++|+.+|+||++|+|+|  +|. ++|+|+|++++|.++   +++.|
T Consensus       663 ~~~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~-alD~F~V~d~~g~~~~~~~~~~l  740 (854)
T PRK01759        663 GDLLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY-VLDSFIVTELNGKLLEFDRRRQL  740 (854)
T ss_pred             CCCEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE-EEEEEEEeCCCCCCCCHHHHHHH
Confidence            345665 45567789999999999999999999999999999999999987  666 589999999988763   67788


Q ss_pred             HHHHHhhCCCCCcc---c-ccc----------cCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754           80 KNRLMLECPSCSVS---F-YFN----------QLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP  145 (419)
Q Consensus        80 ~~~Le~~L~~~~~~---~-~~~----------~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~  145 (419)
                      ++.|+++|.+....   . .++          ...++..+..+|+|+|.++||||||++|+++|+++|++|+.|+|.| .
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-~  819 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-I  819 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-c
Confidence            99999998765421   1 001          1234567788999999999999999999999999999999999986 6


Q ss_pred             CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          146 DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      |+++.|+|||++.+|..++++..++|+++|.++|
T Consensus       820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            9999999999999887666555599999998876

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.7e-24  Score=238.63  Aligned_cols=175  Identities=22%  Similarity=0.266  Sum_probs=144.7

Q ss_pred             CCceEEEEecCCC---CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc-----c
Q 014754            5 NDDVVLIQKGKRP---GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI-----I   74 (419)
Q Consensus         5 ~~~~v~~~~~~~~---~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~-----~   74 (419)
                      ++|++++ ..++.   .++++|+||++||||||+++|++|+.+|+||++|+|+|  ||+ ++|+|+|++++|.+     .
T Consensus       687 ~~~~v~~-~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~-alD~F~V~d~~g~~~~~~~~  764 (895)
T PRK00275        687 GGPLVLI-KETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQF-TLDTYIVLDDDGEPIGDNPA  764 (895)
T ss_pred             CCCeEEE-EecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCe-EEEEEEEeCCCCCCccchHH
Confidence            4677774 33343   58999999999999999999999999999999999986  777 58999999998875     2


Q ss_pred             cHHHHHHHHHhhCCCCCc--c-c-cc--cc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEE
Q 014754           75 RWTNLKNRLMLECPSCSV--S-F-YF--NQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQR  138 (419)
Q Consensus        75 ~~~~l~~~Le~~L~~~~~--~-~-~~--~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~  138 (419)
                      +|++|++.|+++|.+...  . . .+  ..          ...+..+..+|+|+|+++||||||++|+++|+.+|+||++
T Consensus       765 r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~  844 (895)
T PRK00275        765 RIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQN  844 (895)
T ss_pred             HHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEE
Confidence            688899999999876542  1 0 00  11          1123455689999999999999999999999999999999


Q ss_pred             EEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHccc
Q 014754          139 VKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       139 a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~  182 (419)
                      |+|+|+ |++++|+|||++.+|..+ +++++++|+++|.++|.+.
T Consensus       845 AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        845 AKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             eEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            999987 999999999999887654 5578999999999999654

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=3.6e-24  Score=238.02  Aligned_cols=187  Identities=25%  Similarity=0.358  Sum_probs=156.7

Q ss_pred             CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHccc
Q 014754          104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       104 ~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~~~  182 (419)
                      ...+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.. .+++++++|++.|..++.+.
T Consensus       728 ~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~  807 (931)
T PRK05092        728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE  807 (931)
T ss_pred             CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            34478999999999999999999999999999999999999999999999999988764 46689999999999999654


Q ss_pred             ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754          183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL  262 (419)
Q Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL  262 (419)
                      . .    +.  .        .+.++                ..+..+...+..+|.|.|+|+.+..+|+|+|.+.|||||
T Consensus       808 ~-~----~~--~--------~~~~r----------------~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGL  856 (931)
T PRK05092        808 V-R----LP--E--------ALAKR----------------TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGL  856 (931)
T ss_pred             C-C----Cc--c--------ccccc----------------cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcH
Confidence            2 1    00  0        01000                000001113456899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      |++|+++|+++|+||.+|+|.|  .|+++.|+|++ +.+|.++.+++.++.|+++|.+.+..
T Consensus       857 l~~I~~~l~~~gl~I~~A~I~T--~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        857 LYDLTRALSDLNLNIASAHIAT--YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             HHHHHHHHHHCCceEEEEEEEE--cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999995  79999999999 78899999988899999999999865

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=3.6e-24  Score=235.18  Aligned_cols=181  Identities=20%  Similarity=0.234  Sum_probs=150.5

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccc
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCI  184 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~  184 (419)
                      ..+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...+++++++|++.|.++|.++. 
T Consensus       675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~-  753 (856)
T PRK03059        675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA-  753 (856)
T ss_pred             CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC-
Confidence            4578999999999999999999999999999999999999999999999999988775566899999999999997652 


Q ss_pred             ccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHH
Q 014754          185 SCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLY  264 (419)
Q Consensus       185 ~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~  264 (419)
                      .    +.  .        ...++                 .+ .+...+..++.|.|+++.+.++|+|+|.++||||||+
T Consensus       754 ~----~~--~--------~~~~~-----------------~~-~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa  801 (856)
T PRK03059        754 P----LP--E--------PSKGR-----------------LS-RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLY  801 (856)
T ss_pred             C----cc--h--------hhccc-----------------cc-ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHH
Confidence            0    00  0        01000                 00 0111345688999999999999999999999999999


Q ss_pred             HHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          265 DIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       265 ~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      +|+.+|+.+|+||..|+|.|  .|+++.|+|+|.  +.++.+++++++|+++|.+++.
T Consensus       802 ~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        802 AIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999996  599999999993  3445677889999999987663

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.1e-23  Score=231.43  Aligned_cols=171  Identities=22%  Similarity=0.255  Sum_probs=141.0

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc---ccHHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI---IRWTNL   79 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~---~~~~~l   79 (419)
                      ++|+++ ...++..++++|+|+++||||||++||++|+.+|+||++|+|+|  ||.+ +|+|+|.+++|..   .+|++|
T Consensus       664 ~~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~-ld~f~V~~~~~~~~~~~~~~~i  741 (856)
T PRK03059        664 DTPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYA-LDTFQVLDPEEDVHYRDIINLV  741 (856)
T ss_pred             CCCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeE-EEEEEEeCCCCCCChHHHHHHH
Confidence            457777 45557779999999999999999999999999999999999985  8884 8999999987752   378999


Q ss_pred             HHHHHhhCCCCCc--c-cc---cccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754           80 KNRLMLECPSCSV--S-FY---FNQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT  143 (419)
Q Consensus        80 ~~~Le~~L~~~~~--~-~~---~~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T  143 (419)
                      ++.|+++|.+...  . ..   +++.          ..+..+.+.|.|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence            9999999976432  1 10   1111          12244568999999999999999999999999999999999998


Q ss_pred             ecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          144 TPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       144 ~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      . ||+++|+|||.+..  ..+++++++|++.|.++|+
T Consensus       822 ~-~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 L-GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA  855 (856)
T ss_pred             c-CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence            6 99999999996433  3467889999999998873

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.3e-24  Score=220.88  Aligned_cols=179  Identities=22%  Similarity=0.271  Sum_probs=149.7

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC  186 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~  186 (419)
                      ..+.|.|+++|+|.||+.+++.+...|.||++|+|+|+.+|+++|+|+|.+++|..+++.+...++..|.+++....   
T Consensus       683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~---  759 (867)
T COG2844         683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK---  759 (867)
T ss_pred             CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC---
Confidence            67999999999999999999999999999999999999999999999999999988888888888888888885442   


Q ss_pred             ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754          187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI  266 (419)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i  266 (419)
                         . .|..   ++  ..++                      +...+.++|+|.|.|..+..+|+|+|.+.||||||+++
T Consensus       760 ---~-~~~~---~~--r~~r----------------------~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v  808 (867)
T COG2844         760 ---A-QPPR---RR--RIPR----------------------KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAAL  808 (867)
T ss_pred             ---C-CCcc---cc--ccCc----------------------ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHH
Confidence               0 0100   00  1111                      11234578999999999999999999999999999999


Q ss_pred             HHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          267 MRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       267 ~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      +++|.+++++|++|+|+  |.|++++|+||+ +..|.+++ ++....+.+.|.+.+.
T Consensus       809 ~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         809 AGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             HHHHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence            99999999999999999  589999999999 78899986 4555666666665543

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.6e-23  Score=228.00  Aligned_cols=176  Identities=20%  Similarity=0.278  Sum_probs=143.0

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCIS  185 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~  185 (419)
                      .+.+.|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|..+   .++++++.|.++|.++. .
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence            57899999999999999999999999999999999998 8999999999999887643   35789999999997642 0


Q ss_pred             cccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHH
Q 014754          186 CELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYD  265 (419)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~  265 (419)
                      .                  ..++.+.          ++.....+...+..++.|.++|+.+.++|+|+|.|.||||||++
T Consensus       672 ~------------------~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~  723 (774)
T PRK03381        672 V------------------LARLAAR----------EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR  723 (774)
T ss_pred             h------------------hhhhhcc----------cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence            0                  0000000          00000001113456889999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHH
Q 014754          266 IMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       266 i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      |+++|+++|+||.+|+|.|  .|+++.|+||| +.+|.+++++  ++.|+++|.
T Consensus       724 Ia~~L~~~~lnI~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        724 LARALERAGVDVRWARVAT--LGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHHHHHCCCeEEEEEEee--cCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            9999999999999999995  69999999999 7889999965  788888764

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=228.94  Aligned_cols=164  Identities=17%  Similarity=0.175  Sum_probs=134.7

Q ss_pred             ceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754            7 DVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus         7 ~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      +++. ...++ .+.++|+|+++||||||++||++|+.+||||++|+|++ ||+ ++|+|+|.+++|.+..|+++++.|++
T Consensus       588 ~~v~-~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~-~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        588 VHVE-IAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGV-AVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CEEE-EeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCE-EEEEEEEECCCCCcchHHHHHHHHHH
Confidence            4443 34445 78999999999999999999999999999999999998 776 58999999998876678999999999


Q ss_pred             hCCCCCc---cc-cc------ccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754           86 ECPSCSV---SF-YF------NQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP  145 (419)
Q Consensus        86 ~L~~~~~---~~-~~------~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~  145 (419)
                      +|.+...   .. .+      .+.          ..+..+..+++|+|+++||||||++|+++|+.+|+||++|+|.|. 
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-  743 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-  743 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-
Confidence            9977532   10 01      110          112444568999999999999999999999999999999999986 


Q ss_pred             CCeEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 014754          146 DGRVLDLFFITDNRELLHTKKRQDETCEQL  175 (419)
Q Consensus       146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L  175 (419)
                      |++++|+|||++.+|..++++ .++|+++|
T Consensus       744 g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L  772 (774)
T PRK03381        744 GADVVDVFYVTGAAGGPLADA-RAAVEQAV  772 (774)
T ss_pred             CCeEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence            999999999999988766554 67777765

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.89  E-value=1.2e-21  Score=217.91  Aligned_cols=175  Identities=22%  Similarity=0.245  Sum_probs=143.9

Q ss_pred             CceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc----ccHHHH
Q 014754            6 DDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI----IRWTNL   79 (419)
Q Consensus         6 ~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~----~~~~~l   79 (419)
                      ++.++..++++..++++|+|+++||||||++||++|+.+|+||++|+|+|  +|+ ++|+|+|++++|.+    .+++.|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~-alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-ALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCe-EEEEEEEECCCCCCCCCHHHHHHH
Confidence            44555555567778999999999999999999999999999999999987  676 58999999988754    368889


Q ss_pred             HHHHHhhCCCCCc--c-c-cc--c--cC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754           80 KNRLMLECPSCSV--S-F-YF--N--QL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        80 ~~~Le~~L~~~~~--~-~-~~--~--~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                      ++.|+.++.+...  . . .+  .  +.          .++..+..+|.|+|+++||||||++|+++|+++|+||++|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            9999998855421  0 1 01  1  11          123456678999999999999999999999999999999999


Q ss_pred             EeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHccc
Q 014754          142 TTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLGES  182 (419)
Q Consensus       142 ~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~~~  182 (419)
                      .| .++++.|+|||++.+|.. .+++++++|++.|.++|.+.
T Consensus       877 ~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        877 AT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             EE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            97 589999999999988764 56678899999999999654

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.89  E-value=1e-21  Score=217.00  Aligned_cols=172  Identities=24%  Similarity=0.292  Sum_probs=143.4

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee-e-cCcEEEEEEEEecCCCCcc----cHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS-T-DGIWCYIVLWVVPHSSSII----RWTN   78 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~-t-dG~~~~d~f~V~~~~g~~~----~~~~   78 (419)
                      ++|.+.+... ...++++|+|+++||||||++|+++|+.+|+||.+|+|+ + +|+ ++|+|+|++++|.++    ++++
T Consensus       654 ~~~~v~~~~~-~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~-~lD~F~V~~~~g~~~~~~~~~~~  731 (850)
T TIGR01693       654 GGPLALIDGT-RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV-ALDTFVVQDLFGSPPAAERVFQE  731 (850)
T ss_pred             CCCEEEEecc-CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCE-EEEEEEEECCCCCCCCcHHHHHH
Confidence            4577766654 347899999999999999999999999999999999999 4 666 589999999988652    5888


Q ss_pred             HHHHHHhhCCCCCc---c--cc---ccc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEE
Q 014754           79 LKNRLMLECPSCSV---S--FY---FNQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVK  140 (419)
Q Consensus        79 l~~~Le~~L~~~~~---~--~~---~~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~  140 (419)
                      |++.|.++|.+...   .  .+   +++          ..++..+..+|.|+|.++|||||+++|+++|+++|+||++|+
T Consensus       732 i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~  811 (850)
T TIGR01693       732 LLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAK  811 (850)
T ss_pred             HHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEE
Confidence            99999999866432   0  10   011          123466778999999999999999999999999999999999


Q ss_pred             EEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          141 VTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       141 i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      |.| .++++.|+|||++..|.+.++++++.|+++|.++|
T Consensus       812 i~t-~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       812 ITT-FGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EEe-cCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            997 57999999999998887766688899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.9e-21  Score=202.33  Aligned_cols=173  Identities=25%  Similarity=0.283  Sum_probs=134.2

Q ss_pred             CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcc---cHHHH
Q 014754            5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSII---RWTNL   79 (419)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~---~~~~l   79 (419)
                      ++|+|..+.. ...++++|+||+||+|.||+.+|+.++..|+||++|+|+|  ||+. +|+|+|++++|.++   +...+
T Consensus       670 ~~~Lv~~~~r-~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~a-lDtfiv~~~~g~~~~~dr~~~~  747 (867)
T COG2844         670 GKPLVLISVR-PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYA-LDTFIVLEPDGFPVEEDRRAAL  747 (867)
T ss_pred             cCcceeeeec-ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCce-eeeEEEecCCCCccchhHHHHH
Confidence            4567765433 4448899999999999999999999999999999999986  9995 89999999998663   34444


Q ss_pred             HHHHHhhCCCCCcc-----cccccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754           80 KNRLMLECPSCSVS-----FYFNQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus        80 ~~~Le~~L~~~~~~-----~~~~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      +..+.+++.+....     ..+++.          ..+..+.+.++++|.+.||||||++++++|+++|++|++|+|.| 
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT-  826 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT-  826 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence            45555555332211     001111          12244557999999999999999999999999999999999986 


Q ss_pred             cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          145 PDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       145 ~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      .|+++.|+|||++..|..++++..+.+.+.|.+.+.
T Consensus       827 ~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~  862 (867)
T COG2844         827 FGERVEDVFIVTDADGQALNAELRQSLLQRLLEALL  862 (867)
T ss_pred             ccccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence            699999999999999876677666666666666553

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=1.9e-19  Score=138.51  Aligned_cols=73  Identities=18%  Similarity=0.373  Sum_probs=69.8

Q ss_pred             eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      +|+|+|.|+|||||||+|+++|+++|++|++|+|+  |.|+++.|+||+ +.+|.|+.+++++++|+++|.+++++
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999  589999999999 88999999999999999999999876

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.77  E-value=2.9e-18  Score=131.91  Aligned_cols=75  Identities=69%  Similarity=1.224  Sum_probs=69.7

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      |+|+|.|+|||||||+|+++|+++|++|++|+|++.|.|+++.|+||++.+|++++|+++++.|+++|.+++.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999944489999999999888999999999999999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.77  E-value=1.6e-17  Score=151.11  Aligned_cols=160  Identities=13%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC-C
Q 014754          246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH-P  324 (419)
Q Consensus       246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~-~  324 (419)
                      ..++.+|++.|+|||||++.++++|+++||||.+++.+.  .|+.+.-++++  .|.+    ...+.|+..|...-.+ .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~--lgg~Fa~i~lv--s~~~----~~~~~le~~L~~l~~~~~   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM--LGEEFTFIMLL--SGSW----NAITLIESTLPLKGAELD   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh--hCCceEEEEEE--eCCh----hHHHHHHHHHHhhhhhcC
Confidence            457899999999999999999999999999999999996  57766644444  3433    4678888887544433 4


Q ss_pred             ceEEEecCCC--CcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeec--cCceeeEEEEEEEcCCCCCCc
Q 014754          325 LRVIIANRGP--DTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYST--SEREWEIYRFLLDENCKFQLS  400 (419)
Q Consensus       325 ~~v~i~~~~~--~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~--~~~~~~~~~f~~~d~~g~~~~  400 (419)
                      +.+.+.....  ......++.+++.|.||||||++||++|+++|+||.++++.+...  .+..-....|.+.-|.|..+.
T Consensus        77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~  156 (190)
T PRK11589         77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAA  156 (190)
T ss_pred             eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHH
Confidence            5555432111  122223589999999999999999999999999999999987542  222124555666557777665


Q ss_pred             chHHHHHHHHHHHHHH
Q 014754          401 SMVAREQIVDRVRRAL  416 (419)
Q Consensus       401 ~~~~~~~~~~~~~~~l  416 (419)
                         .-+.-.+.++.+|
T Consensus       157 ---~L~~~l~~l~~eL  169 (190)
T PRK11589        157 ---NIEQAFKALCTEL  169 (190)
T ss_pred             ---HHHHHHHHHHHHh
Confidence               3444455555554

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=6e-18  Score=129.25  Aligned_cols=68  Identities=25%  Similarity=0.354  Sum_probs=64.4

Q ss_pred             eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHH
Q 014754          249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|+  |.|+++.|+||+ +.+|+|+.|+++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999  589999999999 889999999999999998874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.68  E-value=4.5e-16  Score=141.63  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=104.0

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCC-CCcc-c
Q 014754           17 PGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPS-CSVS-F   94 (419)
Q Consensus        17 ~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~-~~~~-~   94 (419)
                      ....+.|+|+|+|||||+++++++|+++||||+++++...|..|.-++.|   ++.......++..|...-.. .+.. .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~~~~~~le~~L~~l~~~~~L~i~v   81 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSWNAITLIESTLPLKGAELDLLIVM   81 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCChhHHHHHHHHHHhhhhhcCeEEEE
Confidence            34678999999999999999999999999999999998744445677777   33211334444444332211 1111 1


Q ss_pred             ccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC---C--eEEEEEEEEcCCCCCCCHHHHH
Q 014754           95 YFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD---G--RVLDLFFITDNRELLHTKKRQD  169 (419)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~---~--~~~d~F~V~~~~g~~~~~~~~~  169 (419)
                      .+.........+..+.++|++.|||||++++|++|+++|+||.+.+..|...   +  ...-.|.+.-+.+     ...+
T Consensus        82 ~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-----~~~~  156 (190)
T PRK11589         82 KRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-----QDAA  156 (190)
T ss_pred             EeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-----CCHH
Confidence            1211110112223689999999999999999999999999999999887642   1  2333444443332     2366


Q ss_pred             HHHHHHHHHHc
Q 014754          170 ETCEQLHAVLG  180 (419)
Q Consensus       170 ~l~~~L~~~l~  180 (419)
                      .|+++|++..+
T Consensus       157 ~L~~~l~~l~~  167 (190)
T PRK11589        157 NIEQAFKALCT  167 (190)
T ss_pred             HHHHHHHHHHH
Confidence            78888888653

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4.7e-16  Score=119.70  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHc
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~  180 (419)
                      +|+|+|.++||||||++|+++|+++|++|.+|+|.| .|+++.|+|||++.+|.. .++++.++|++.|.+++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999997 699999999999998864 567888999999999885

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.66  E-value=9.7e-16  Score=117.11  Aligned_cols=68  Identities=24%  Similarity=0.347  Sum_probs=61.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLH  176 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~  176 (419)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.| .|+++.|+|||++.+|.. .+++++++|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            488999999999999999999999999999999986 699999999999998765 46788888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=1.5e-15  Score=118.36  Aligned_cols=72  Identities=81%  Similarity=1.214  Sum_probs=66.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcc
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGE  181 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~  181 (419)
                      .++|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|||.++.+...+++++++++++|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            689999999999999999999999999999999888999999999999877756778999999999999854

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.64  E-value=1.7e-15  Score=132.01  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=112.5

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCce
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLR  326 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~  326 (419)
                      .+|.+|++.|.||||++..++++..++||||.++|+++  .|+.+.  |++...|.|    +...+|+..| ..+.....
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a--~i~lisgs~----dav~~le~~l-~~l~~~~~   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFA--GIMLISGSW----DAVTLLEATL-PLLGAELD   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhccee--EEEEEeeCH----HHHHHHHHHh-hcccccCC
Confidence            46799999999999999999999999999999999995  687666  666777765    6789999987 55555444


Q ss_pred             EE--EecCCCCc--ccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754          327 VI--IANRGPDT--ELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS  400 (419)
Q Consensus       327 v~--i~~~~~~~--~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~  400 (419)
                      +.  +...++..  ....++.++|.+.|||||+.++|++|.++|+||.++++.+...-+.  ...-|...-.-+-|++
T Consensus        74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s--~~~lfha~it~~lPa~  149 (176)
T COG2716          74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGS--SAPLFHAQITARLPAN  149 (176)
T ss_pred             eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCC--CccceehhhhccCCCc
Confidence            44  43333332  2355789999999999999999999999999999999999777666  5677777443444443

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.63  E-value=3.3e-15  Score=115.44  Aligned_cols=71  Identities=28%  Similarity=0.375  Sum_probs=64.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l  179 (419)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|||+++.+... +++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            6799999999999999999999999999999999988899999999999877654 5788999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.61  E-value=3.5e-15  Score=130.04  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=117.1

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcc----
Q 014754           18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVS----   93 (419)
Q Consensus        18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~----   93 (419)
                      ..++.|+++++|+||+...+|+..+++||||+++++..-|..|..+..|   +|   .|+.+ ..||+.|+...+.    
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sg---s~dav-~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SG---SWDAV-TLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---ee---CHHHH-HHHHHHhhcccccCCeE
Confidence            3568999999999999999999999999999999999977665566666   56   69999 8899998765431    


Q ss_pred             --cccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHH
Q 014754           94 --FYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDE  170 (419)
Q Consensus        94 --~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~  170 (419)
                        +.+......+..+..+.+.|.+.|||||+.++|++|..+|+||.+....|....+ -.-.|...-.- .++..-....
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~-~lPa~~~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITA-RLPANLSISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhc-cCCCcCcHHH
Confidence              2222222225567799999999999999999999999999999988887765332 23445554322 2333345678


Q ss_pred             HHHHHHHHH
Q 014754          171 TCEQLHAVL  179 (419)
Q Consensus       171 l~~~L~~~l  179 (419)
                      |+++|++..
T Consensus       155 l~~~f~al~  163 (176)
T COG2716         155 LRDAFEALC  163 (176)
T ss_pred             HHHHHHHHH
Confidence            888888865

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=6.6e-15  Score=113.34  Aligned_cols=70  Identities=26%  Similarity=0.456  Sum_probs=63.3

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE--eecCCeEEEEEEEEcCCC-CCCCHHHHHHHHHHHHHHHc
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT--TTPDGRVLDLFFITDNRE-LLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~--T~~~~~~~d~F~V~~~~g-~~~~~~~~~~l~~~L~~~l~  180 (419)
                      |+|+|.++||||||++|+++|+++|++|+.|+|.  | .|+++.|+||| +..| ++.++++.+.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999998  7 59999999999 6655 55678899999999999874

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=1.6e-14  Score=112.00  Aligned_cols=71  Identities=25%  Similarity=0.398  Sum_probs=64.5

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCC-CC-CCCHHHHHHHHHHHHHHHc
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNR-EL-LHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~-g~-~~~~~~~~~l~~~L~~~l~  180 (419)
                      |+|+|+++||||||++|+++|+++||||++|+++|. ++++.|+|||++++ +. ..+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999975 99999999999986 65 3567889999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=2.7e-15  Score=112.39  Aligned_cols=77  Identities=64%  Similarity=1.110  Sum_probs=73.0

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHcCC
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW  419 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~~~  419 (419)
                      +++|++|..||.+++|+|-+|+.+|++|++++|.+|..++++|++++|.+.+..+. +++.+.|+.++|+|++.+|||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999999999999999999887555 888999999999999999999

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.49  E-value=2.4e-13  Score=102.63  Aligned_cols=64  Identities=25%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .+|+|+++||||||++++++|+.+|+||++|+|++  ||++ +|+|+|.+.+|.  ..+.+.+.|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~-LDtF~V~d~~~~--~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLA-LDIFVVTGWKRG--ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeE-EEEEEEecCCcc--chHHHHHHHHHhh
Confidence            58999999999999999999999999999999986  8885 899999999886  6778888888765

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.47  E-value=4e-13  Score=104.09  Aligned_cols=71  Identities=23%  Similarity=0.300  Sum_probs=64.8

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecC-CCcCCCHHHHHHHHHHHHHHhc
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKD-GKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~-g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      |+|+|.++|||||+++|+++|+++|+||.+|++.|  .|+.+.|+|++ +.+ |.++.+++++++|++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999996  59999999998 766 8888888899999999987764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.46  E-value=6e-13  Score=100.45  Aligned_cols=66  Identities=23%  Similarity=0.323  Sum_probs=57.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.     .-+.|+++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence            57899999999999999999999999999999999999999999999998764     2245666666654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.46  E-value=7.2e-13  Score=103.16  Aligned_cols=72  Identities=25%  Similarity=0.391  Sum_probs=64.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      +++|.++|||||+++++.+|+++|++|.+|+|.| |.|+++.|+|++ +.+|. ..+++++++|++.|.+++++.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence            7899999999999999999999999999999997 589999999999 66555 556788899999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.41  E-value=1.8e-12  Score=100.11  Aligned_cols=70  Identities=26%  Similarity=0.302  Sum_probs=62.6

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      +.|+|.++||||||++++.+|+.+|+||.+|+|.| +.++++.|+|++ +.+|.++.+++++++|++.|...
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~   72 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDA   72 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence            57899999999999999999999999999999997 457899999988 77788887788889999888654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.32  E-value=1.8e-11  Score=94.24  Aligned_cols=67  Identities=28%  Similarity=0.413  Sum_probs=58.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH  176 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~  176 (419)
                      +.|+|.++||||+|++|+++|+++|+||++|.++|. ++++.|+|+|.++++...++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            579999999999999999999999999999999875 6799999999998876556667777766654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.25  E-value=7.4e-11  Score=89.87  Aligned_cols=70  Identities=40%  Similarity=0.551  Sum_probs=62.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      |.|.|.++|+||+|++|+++|+++|+||.++++.|. ++++.|+|++.+..+...+.+++++|+++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999875 5699999999998876667789999999988753

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.22  E-value=4.7e-11  Score=86.25  Aligned_cols=68  Identities=74%  Similarity=1.432  Sum_probs=61.7

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCC-cccHHHHHHHHHhhCC
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSS-IIRWTNLKNRLMLECP   88 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~-~~~~~~l~~~Le~~L~   88 (419)
                      ++|+|.+||+.||-.++++++.+.|++|..+.++|||.|++.+|+|...... +++|+.++++|++++|
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP   69 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP   69 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999999999999999999876533 3799999999998864

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.19  E-value=3.6e-10  Score=121.23  Aligned_cols=145  Identities=10%  Similarity=0.049  Sum_probs=115.8

Q ss_pred             eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754          108 VYLLKLFC-LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC  186 (419)
Q Consensus       108 ~~~i~v~~-~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~  186 (419)
                      ...++|.. +|++|+|.+++++|+.+|++|++|++.+  +|.+...|.|.+..|..+++.   .+++.+...+.+..+  
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~--  618 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDPQ---EFLQAYKSGVYSELP--  618 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCChH---HHHHHHHHhhcCCCC--
Confidence            45788888 9999999999999999999999999985  788889999999888877764   677888888765531  


Q ss_pred             ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754          187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI  266 (419)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i  266 (419)
                                       ..                           ...||.+.+..      ++++|++.||||+|+.+
T Consensus       619 -----------------~~---------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~  648 (693)
T PRK00227        619 -----------------DP---------------------------APGITATFWHG------NILEVRTEDRRGALGAL  648 (693)
T ss_pred             -----------------cc---------------------------cCCCCceEeeC------cEEEEEeCccccHHHHH
Confidence                             00                           01245666654      79999999999999999


Q ss_pred             HHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          267 MRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       267 ~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      +++|.    +|.+|+++  |.|..+.|.|++...       .....++.++..++.
T Consensus       649 ~~~l~----~~~~~~~~--~~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~  691 (693)
T PRK00227        649 LGVLP----DLLWITAS--TPGATMIVQAALKPG-------FDRATVERDVTRVLA  691 (693)
T ss_pred             HHHhh----hhhhHhhc--CCCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence            99999    88999999  589999999998621       124667666665543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.10  E-value=6.6e-10  Score=85.52  Aligned_cols=54  Identities=24%  Similarity=0.419  Sum_probs=48.2

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcc
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSII   74 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~   74 (419)
                      +++|+|+++|+||+|++|+++|+++|+||++|++++ +|+ .+|+|+|+++++.+.
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~-~~d~f~v~~~~~~~~   55 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDM-AVNVFYVTDANGNPV   55 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCe-EEEEEEEECCCCCcC
Confidence            468999999999999999999999999999999987 555 589999999887653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.08  E-value=1.4e-09  Score=116.84  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=114.7

Q ss_pred             EEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc--cc
Q 014754           21 HVITVNC-PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY--FN   97 (419)
Q Consensus        21 ~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~--~~   97 (419)
                      -.++|.. +|++|++.+++++|+.++++|.+|++.++|.+ ...|.|....|.+.+...+++.+...+.+......  ++
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPW-SAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCce-EEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            5778888 99999999999999999999999999998886 79999999888777888888999988876553111  11


Q ss_pred             cCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754           98 QLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus        98 ~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ....     ..++++|.+.||+|+|+.++++|.    .|..|++.| .|..++|+||+.+..       ...+++..+..
T Consensus       626 ~~~~-----~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~~-------~r~~~~~~~~~  688 (693)
T PRK00227        626 ATFW-----HGNILEVRTEDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPGF-------DRATVERDVTR  688 (693)
T ss_pred             ceEe-----eCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCcc-------cHHHHHHHHHH
Confidence            1111     127999999999999999999999    899999986 689999999998321       24567777777


Q ss_pred             HHc
Q 014754          178 VLG  180 (419)
Q Consensus       178 ~l~  180 (419)
                      +|.
T Consensus       689 ~~~  691 (693)
T PRK00227        689 VLA  691 (693)
T ss_pred             HHh
Confidence            663

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.01  E-value=3.3e-09  Score=80.63  Aligned_cols=68  Identities=32%  Similarity=0.572  Sum_probs=59.1

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      |+++|.+.||||+|++|+++|.++|++|.++++.+  .++.+.|+|++ +.+|.+. +.+.+++|+++|...
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe--cCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            68999999999999999999999999999999985  56699999988 6777774 467888899888654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.97  E-value=7e-09  Score=78.54  Aligned_cols=68  Identities=34%  Similarity=0.568  Sum_probs=59.8

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      .|.|.++|+||+|++++++|+++|++|.++.+.+.. ++..++|++..+++...++++++.|+++|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-ERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-CEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            688999999999999999999999999999999764 49999999998876556667889999988765

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.67  E-value=2.4e-07  Score=71.96  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      +.+|++.|+||||+++.++++|+++|+||.+.+..+ .++++.-.+.|.-+      ++..++|+++|.++..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999986 57888888888754      4567888888888753

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.66  E-value=2.7e-07  Score=69.71  Aligned_cols=68  Identities=35%  Similarity=0.575  Sum_probs=56.2

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      +.|.|.++|+||+|++++.+|.++|++|.++++.+  .+++..++|.+ ..++... +++++++|++.|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            46889999999999999999999999999999985  45588899988 5555553 457888888887543

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.66  E-value=1e-07  Score=74.01  Aligned_cols=64  Identities=20%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      ...|+|+|+||||+++.++++|+++||||.+++..+.|..|..++.|.-+..   ..+++++.|++.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~---~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED---SLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH---HHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc---cHHHHHHHHHHH
Confidence            4689999999999999999999999999999999984444567788865532   566676676664

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.60  E-value=3.1e-07  Score=71.51  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      +.|++.||||||+++++++.|+++|+||.+++.+. +|. |.-.+.+..+.   ...+.+++.|+...
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~-F~m~~~~~~~~---~~~~~l~~~l~~~~   65 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE-FALTMLVEGSW---DAIAKLEAALPGLA   65 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE-EEEEEEEEecc---ccHHHHHHHHHHHH
Confidence            67899999999999999999999999999999887 555 44555554332   25677777777643

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.42  E-value=1.3e-06  Score=67.57  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=51.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .|+|+|+||||+.++++++|+++|+||.+.+..+ .|. |.-.|.|.-|.+.  +.+.+++.|+..+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~-f~~~~~v~~p~~~--~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR-LSLGILVQIPDSA--DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe-eEEEEEEEcCCCC--CHHHHHHHHHHHH
Confidence            3799999999999999999999999999998665 666 4577888766542  5777878887765

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.42  E-value=8.4e-07  Score=64.44  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      ++|+|.+||+.||-.++++++.++|++|..+.+.| .|.+..-+|+|......  -+-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence            47999999999999999999999999999999986 68899999999875433  245789999998875

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.41  E-value=3.6e-06  Score=62.63  Aligned_cols=63  Identities=25%  Similarity=0.542  Sum_probs=47.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      |.|.|.++||||+|++++++|+++|+||..+.+.+..++ .....+...+       ....+++.+.|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHcc
Confidence            578999999999999999999999999999999986552 3333333332       33455666666664

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.39  E-value=2.2e-06  Score=66.76  Aligned_cols=64  Identities=13%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ++|++.|+||||++++|+++|+++|+||.+.+.++ .++++.-.+.+..+      ....+.|++.|....
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~~~   65 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPGLA   65 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHHHH
Confidence            68999999999999999999999999999999987 56777555555432      123567777777754

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.37  E-value=1.9e-06  Score=66.62  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      +|+|.|+||||++++++++|+++|+||.+.+..+. ++++.-.|.+.-+.+     ...+.|++.|+...+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~-~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI-HGRLSLGILVQIPDS-----ADSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE-cCeeEEEEEEEcCCC-----CCHHHHHHHHHHHHH
Confidence            37899999999999999999999999999987654 677777787765433     235678888887653

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.34  E-value=3.9e-06  Score=62.44  Aligned_cols=62  Identities=24%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCc--EEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGI--WCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~--~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      +.|.|.++||||++++++++|+++|+||..+..++++.  +.+.++.+.+..    ..+.+.+.|++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEE----DLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGH----GHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCC----CHHHHHHHHHcc
Confidence            47899999999999999999999999999999987332  334455544333    566776777764

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.18  E-value=1.2e-05  Score=62.70  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecC------cEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDG------IWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG------~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .|+|.|+|+||++++|++.|+++|+||.+.+..+++      ..+.-.+.+..|.+  .+..++++.|+...
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHHHH
Confidence            378999999999999999999999999999988643      22345666655543  25777877777754

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.17  E-value=1.5e-05  Score=61.29  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .|+|.|+||||+++++++.|+++|+||.+.+.++  .+..|.-.+.+..+.+ ....+.+++.|+...
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            3789999999999999999999999999999884  3332334455544432 125777877777654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.14  E-value=9.2e-06  Score=64.81  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      ..|++.|+|+||++++++++|+++|+||.+.+.++ .|.+ .-.+.+.-+. .....+.+++.|+...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f-~~~~~v~~~~-~~~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYF-TMIMIVDISE-SNLDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCcc-EEEEEEEeCC-CCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999776 5554 4556665543 1125677777777754

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.11  E-value=0.00011  Score=60.65  Aligned_cols=112  Identities=17%  Similarity=0.161  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccccCCC
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLST  101 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~~~~  101 (419)
                      +|.|+..||||-++..+..|.++|+||..-.|...|.+-+.-+.|.+|       +.-.+.|+.+  +..   .+     
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~~Lee~--gF~---Vr-----   67 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHSVLEEA--GFT---VR-----   67 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHHHHHHC--CcE---EE-----
Confidence            689999999999999999999999999977777677643233344222       2233455553  111   00     


Q ss_pred             CCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          102 RPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       102 ~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                           ..-++-|..+|+||=+++|+.+|.++++|+..+..+++....++-+|-+
T Consensus        68 -----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          68 -----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             -----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence                 2346778899999999999999999999999999998877677665544

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.10  E-value=2e-05  Score=60.64  Aligned_cols=33  Identities=18%  Similarity=0.090  Sum_probs=31.1

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      +.+.|+|||||+++||++|+++|+||.+++..+
T Consensus         2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            678999999999999999999999999999775

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.06  E-value=1.9e-05  Score=63.16  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .+.|+|.|+|+||++++++++|+++|+||.+.+-.+.+..+.-.+.+.-+. .+...+.+++.|++..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~l~   69 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKKDFAELKEELEELG   69 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999998776343344545554442 1124567766666643

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.04  E-value=1.7e-05  Score=63.31  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      ..|++.|+|+||++++++++|+++|+||.+.+..+ .++.+.-.+.+.-+. .   ....+.|++.|.....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~~   68 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEELGK   68 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999986 466666666665332 0   1235678888877653

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.93  E-value=8e-05  Score=58.08  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-----CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-----GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-----~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .|+|.++|+||++++|+++|+++|+||.+.+..+...     ++..-.+.+.-+.     ....++|++.|+...
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHHHH
Confidence            3789999999999999999999999999999987531     3343444444332     123567888777754

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK07431 aspartate kinase; Provisional

Probab=97.93  E-value=0.041  Score=59.20  Aligned_cols=268  Identities=16%  Similarity=0.144  Sum_probs=149.2

Q ss_pred             EEEEE-cCCCCChHHHHHHHHHhCCceEEEEEee--ecCcEEEEEEEEecCCCCcccHHHHHHHHHh---hCCCCCcccc
Q 014754           22 VITVN-CPDKTGLGCDICRIILDFGLYITKGDIS--TDGIWCYIVLWVVPHSSSIIRWTNLKNRLML---ECPSCSVSFY   95 (419)
Q Consensus        22 ~v~V~-~~DrpgL~~~i~~~l~~~~lnI~~A~i~--tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~---~L~~~~~~~~   95 (419)
                      .+++. .++.+|+++++...|+++|.||.--.-+  ..+.. --.|.|...     +.+...+.|+.   .+.. .    
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~-~isf~i~~~-----d~~~~~~~l~~l~~~~~~-~----  340 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSN-DIAFTVAEN-----ELKKAEAVAEAIAPALGG-A----  340 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCc-cEEEEEeHH-----HHHHHHHHHHHHHHHcCC-C----
Confidence            34443 4889999999999999999999855322  23332 235666332     12222222332   2211 0    


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHH
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETC  172 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~  172 (419)
                           ......+...|.|++.   +.+|+++++..+|++.|+||....  ++  +.. -.|.|.        ++..++.-
T Consensus       341 -----~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~-Is~vv~--------~~d~~~av  402 (587)
T PRK07431        341 -----EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK-VSCVID--------AEDGDKAL  402 (587)
T ss_pred             -----cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE-EEEEEc--------HHHHHHHH
Confidence                 0012245778999885   799999999999999999997443  32  221 223332        23344555


Q ss_pred             HHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEE
Q 014754          173 EQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLL  252 (419)
Q Consensus       173 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi  252 (419)
                      +.|++.+.-+....                .+.+    .           +     .......-+-|.    ...+...|
T Consensus       403 ~~Lh~~f~~~~~~~----------------~~~~----~-----------~-----~~~~~~~v~gIa----~~~~~~~i  442 (587)
T PRK07431        403 RAVCEAFELEDSQI----------------EINP----T-----------A-----SGQDEPEVRGVA----LDRNQAQL  442 (587)
T ss_pred             HHHHHHhccCCccc----------------ccCc----c-----------c-----cCCCCCcEEEEE----ccCCEEEE
Confidence            66677663321000                0000    0           0     000000112333    22355566


Q ss_pred             EEE-EcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCC--eeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEE
Q 014754          253 QIH-CVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGY--RDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVII  329 (419)
Q Consensus       253 ~v~-~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~--~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i  329 (419)
                      ++. ..+++|+++.+...|+++|++|..-.-+. ..++  ...=.|.++..     +.....++.+.|...+.. ..+.+
T Consensus       443 ~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~  515 (587)
T PRK07431        443 AIRNVPDRPGMAASIFGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVED  515 (587)
T ss_pred             EECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEE
Confidence            664 46789999999999999999998775531 1221  11113555431     111222222223222211 12222


Q ss_pred             ecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          330 ANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ...        -..+.+.|.   .+||++..+..+|.+.|++|....
T Consensus       516 ~~~--------va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        516 GPA--------IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             eCC--------eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            111        237888886   889999999999999999997666

>PRK00194 hypothetical protein; Validated

Probab=97.92  E-value=4.6e-05  Score=60.94  Aligned_cols=67  Identities=24%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .+.++|.++||||++++++++|+++|+||.+.+..+ .++.+.-.+.+.-+. .   +...+.|++.|....
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~l~   69 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISE-S---KKDFAELKEELEELG   69 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecC-C---CCCHHHHHHHHHHHH
Confidence            678999999999999999999999999999999876 466655544443221 1   112456777777653

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.80  E-value=0.00033  Score=68.04  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc--eEE
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL--RVI  328 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~--~v~  328 (419)
                      +|++.|+|||||++.|++.|+++|+||.+.+-..+..++.+.-.+.++..+..+    ..+.|+++|.+++...+  .+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence            789999999999999999999999999999887531233333222233322122    25677777665344433  333


Q ss_pred             EecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCc
Q 014754          329 IANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGI  367 (419)
Q Consensus       329 i~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v  367 (419)
                      +.....      ..++-|....+..-+.+|....+.-.+
T Consensus        78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~l  110 (280)
T TIGR00655        78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGEL  110 (280)
T ss_pred             EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCCC
Confidence            333211      113333333334466666666654443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.78  E-value=0.00034  Score=68.19  Aligned_cols=68  Identities=12%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE--ecCCCcCCCHHHHHHHHHHHHHH
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ--QKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v--~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      .++++|+|.|+|||||+++|+++|+++|+||.+.+..+...++    .|.+  ..+..+-  +...+.|+++|.+.
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~--~~~~~~L~~~L~~l   73 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGL--IFNLETLRADFAAL   73 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCC--CCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999998611233    3633  3222111  12367888877543

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.78  E-value=0.00018  Score=56.15  Aligned_cols=66  Identities=23%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ..+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.-.     +.+.++.|.+.|++
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence            467899999999999999999999999999999998753 6777777777543     34455555444443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.76  E-value=0.00057  Score=66.66  Aligned_cols=68  Identities=15%  Similarity=0.257  Sum_probs=52.1

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEec-CCCCcccHHHHHHHHHhhCC
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVP-HSSSIIRWTNLKNRLMLECP   88 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~-~~g~~~~~~~l~~~Le~~L~   88 (419)
                      ..+.|+|.|+|||||+++++++|+++|+||.+.+.++  .+..|.-.+.+.- +..  ...+.|++.|++...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~--~~~~~L~~~L~~l~~   75 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLI--FNLETLRADFAALAE   75 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCC--CCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999886  4333445555543 222  257888888887653

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.74  E-value=5.1e-05  Score=59.89  Aligned_cols=66  Identities=23%  Similarity=0.419  Sum_probs=48.3

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee-ecCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS-TDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~-tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      ...|||.|+||||+.+.++++|+++|.||++-.=. -+|.+ --.+.|.-+. ...+..+++..++...
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f-tm~~lV~~~~-~~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF-TMIMLVDISK-EVVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc-eeeeEEcCCh-HhccHHHHHHHHHHHH
Confidence            36899999999999999999999999999985532 38885 3445553331 2236677777776654

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.74  E-value=0.00041  Score=67.63  Aligned_cols=68  Identities=15%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee--e-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS--T-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~--t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      ....|+|.|||||||.++++++|+++|+||++.+-+  + .|.+| -.+.+.+........+.+++.|+...
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~~~~~~~~l~~~l~~l~   78 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSAEAASVDTFRQEFQPVA   78 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999999999999986  3 44443 33333322111236777877777754

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.71  E-value=0.00068  Score=65.83  Aligned_cols=114  Identities=17%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccccc
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQ   98 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~   98 (419)
                      .|+|.|||+||+++.+++.|+++|+||++.+.+.   .|.+ .-.+.+..++ .....+.+++.|+.++..... +.-. 
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F-~mr~~v~~~~-~~~~~~~l~~~l~~~~~~~~~-l~i~-   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRF-FMRVEFQLEG-FRLEESSLLAAFKSALAEKFE-MTWE-   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeE-EEEEEEEeCC-CCCCHHHHHHHHHHHHHHHhC-CEEE-
Confidence            5899999999999999999999999999999876   3664 4455554443 123578888888873322221 0000 


Q ss_pred             CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754           99 LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT  142 (419)
Q Consensus        99 ~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~  142 (419)
                       ....  .....|-|..--+..-|..+......-.+++.=+-+.
T Consensus        78 -l~~~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vi  118 (280)
T TIGR00655        78 -LILA--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVI  118 (280)
T ss_pred             -EecC--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEE
Confidence             0000  0112333333333444666666666555554433444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.68  E-value=0.0017  Score=53.73  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEE
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVII  329 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i  329 (419)
                      -|+|...++||=|..++.+|+++|+||.--.|+  ..|+     | ++..   -+++|+..   .+.|+   +.+..+.+
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~d-----FGIiRm---vV~~~d~A---~~~Le---e~gF~Vr~   68 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGD-----FGIIRM---VVDRPDEA---HSVLE---EAGFTVRE   68 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccC-----cceEEE---EcCChHHH---HHHHH---HCCcEEEe
Confidence            467888999999999999999999999999998  3577     7 4421   11223221   12221   12222221


Q ss_pred             ecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754          330 ANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE  393 (419)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d  393 (419)
                                 ...+-+.-.|+||=++.|..+|.+.++|+...-..++..  .+ +.-.|.+.|
T Consensus        69 -----------~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek--~K-Alli~r~ed  118 (142)
T COG4747          69 -----------TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK--QK-ALLIVRVED  118 (142)
T ss_pred             -----------eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC--ce-EEEEEEhhH
Confidence                       236677889999999999999999999999988776433  22 666666644

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.65  E-value=0.00051  Score=52.42  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      |.|.+.||||+|++|+.++++.|.||.+....+..++.+...|.+.-.     +.+.++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            688999999999999999999999999888876545676666666433     34455666666555

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.64  E-value=0.0011  Score=64.62  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc--c
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV--S   93 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~--~   93 (419)
                      ....|+|.|+||||++++++++|+++|+||.+.+.++   .|.+ .-.+.+..+.+.  ..+.|+++|+.......-  .
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F-~m~~~~~~p~~~--~~~~L~~~L~~l~~~l~l~i~   82 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRF-FMRVEFHSEEGL--DEDALRAGFAPIAARFGMQWE   82 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeE-EEEEEEecCCCC--CHHHHHHHHHHHHHHhCcEEE
Confidence            3578999999999999999999999999999999873   5554 345666545443  578888888886543221  0


Q ss_pred             cccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754           94 FYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT  143 (419)
Q Consensus        94 ~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T  143 (419)
                      ...      ...  ...|-|.+.-+.--|..+........++..=+-+.|
T Consensus        83 i~~------~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         83 LHD------PAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             Eee------ccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence            110      111  113344433344446666666666655544444443

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.63  E-value=8.1e-05  Score=58.76  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      ..+|+|.|.||||+.+.++++|+++|+||++-.-. -.+|++--.+.|.-+.    +......+++.|....+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt-vm~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT-VMDGFFTMIMLVDISK----EVVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH-HHhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence            46899999999999999999999999999976663 4577776777775432    12345677777777654

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.58  E-value=0.00029  Score=68.65  Aligned_cols=71  Identities=13%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754          341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL  416 (419)
Q Consensus       341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l  416 (419)
                      .+.+.+.|.||||||++||++|+++|+||.+++..+....+.  -..++.+.-+.+..++   .-+.-.+.+.++|
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~--F~m~~~~~~p~~~~~~---~L~~~L~~l~~~l   77 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGR--FFMRVEFHSEEGLDED---ALRAGFAPIAARF   77 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCe--EEEEEEEecCCCCCHH---HHHHHHHHHHHHh
Confidence            457999999999999999999999999999999874322222  2334444445553333   4444445555554

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.47  E-value=0.0011  Score=51.68  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=46.4

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL  317 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L  317 (419)
                      ..+-|.|.+.||||+|.+|+.++.+.|+||....+.+...++.+.=.|-+..     .|.++++.|.+.|
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L   69 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence            4567999999999999999999999999999999996211444443343333     3456778777776

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.45  E-value=0.0024  Score=62.35  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFS  283 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~  283 (419)
                      .+++|+|.|+|||||++.|+..|+++|+||.+..-.
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            457999999999999999999999999999998874

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00081  Score=63.46  Aligned_cols=66  Identities=20%  Similarity=0.356  Sum_probs=50.7

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      ....+++.|||++||+++|++.|+++||||.++.=++   .|.+||-+-+.  .++.+...+.+++.+...
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~--~~~~~~~~~~l~~~f~~~   74 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE--GEGGPLDREALRAAFAPL   74 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe--cCCCcccHHHHHHHHHHH
Confidence            5679999999999999999999999999999999876   45555443222  233334678888888773

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.31  E-value=0.0019  Score=49.18  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754          252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      |.|.+.||||+|.+|+.++++.|.||.+....+. ..+.+.-.|.+..     .+.++++.+.++|.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev-----~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDA-----PSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEc-----CCHHHHHHHHHHHh
Confidence            6889999999999999999999999998888752 3344443354433     33567888887764

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.27  E-value=0.0016  Score=50.77  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      .+.+.-.|+||.|+++...|+++|+||.+..+...  .... ..+.|++ |.+|. .. +..-+.+++.++..
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~--~~~~-~~~~f~v-d~~~~-~~-~~~~~~~l~~l~~~   69 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPS--KGGL-WEYVFFI-DFEGH-IE-DPNVAEALEELKRL   69 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEc--CCCC-ceEEEEE-EEECC-CC-CHHHHHHHHHHHHh
Confidence            56667789999999999999999999999987753  2222 5689998 54554 22 44556777887764

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.22  E-value=0.0023  Score=49.51  Aligned_cols=65  Identities=11%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      +.|.+...|+||+|++++++|+..|.||.+..+.-+.+ +..--++.+.   |   ++...+.|...|.+..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~---~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C---TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C---CHHHHHHHHHHHhCCc
Confidence            46899999999999999999999999999888864333 3332233332   1   2456677777777654

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.21  E-value=0.0013  Score=47.39  Aligned_cols=47  Identities=23%  Similarity=0.413  Sum_probs=39.9

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD  157 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~  157 (419)
                      |.+..+|+||.+++++..|.++|+||.+..+....++...-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999988654477777777754

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.0022  Score=60.61  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      ++.+++++.|+|++||++.|++.|+++|+||.++.-++.. .|+++.--......+    +...+.|++.|..+
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~~   74 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAPL   74 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHHH
Confidence            3578999999999999999999999999999999998533 333322222222111    13345677777763

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.15  E-value=0.0043  Score=46.34  Aligned_cols=62  Identities=21%  Similarity=0.192  Sum_probs=41.4

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec----CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP----DGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~----~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      +.|..+|+||+|++|+.+|+++|+||.+.......    .+...-.|.+...     +.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            35778999999999999999999999988765322    2444444444321     23445555555543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.09  E-value=0.0041  Score=47.48  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=45.3

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHH-HHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKK-RQDETCEQLHA  177 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~-~~~~l~~~L~~  177 (419)
                      .+.|.++|+||++++|++.|+++|+||......+..++.+.-.|.+...+     .+ .+++|.++|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence            57899999999999999999999999998876543345555556664322     22 45555555554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.06  E-value=0.004  Score=56.09  Aligned_cols=66  Identities=14%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      ..+.|.+.|+||+|++++++|+..|+||.+..+..+.. +..--++.+.  .    ++..++.|.+.|.+..+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHhH
Confidence            47999999999999999999999999999998865332 3332223222  1    12336788888888763

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.02  E-value=0.0041  Score=48.86  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..|.+...|+||.|+++++.|+..|+||.+..+..+.+.. .--++.+...     ++..++.+...|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-----CHHHHHHHHHHHhCCc
Confidence            3689999999999999999999999999999887654433 3333333211     3455677777777754

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.01  E-value=0.0047  Score=49.75  Aligned_cols=67  Identities=12%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .....|.+...|+||+|++|++.|+..|.||.+..+.-+..+ ..--++.+ .      +++.++++...|.++.
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~------~~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N------DDQRLEQMISQIEKLE   73 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c------CchHHHHHHHHHhCCc
Confidence            345679999999999999999999999999998887644332 22223322 2      1346677777777765

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.00  E-value=0.0011  Score=50.38  Aligned_cols=68  Identities=16%  Similarity=0.304  Sum_probs=51.3

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EE-ecCCCcCCCHHHHHHHHHHHH
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQ-QKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v-~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      -+++.|+-||-.+||++-+|+.+|+.|.+|.|.....+++...+| ++ +..+..++.......+.+.+.
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~   71 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVT   71 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHH
Confidence            378999999999999999999999999999999754577777776 44 444444554555556655543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=97.00  E-value=0.0042  Score=49.78  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHc
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALM  417 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~  417 (419)
                      +.+-+...|+||-|+++-..|+++|||+.+++++.  ..+.. -.+.||+ |.+|.  .+ ..-+++++.+++.|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~-~~Y~FfV-Dieg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNK-DEYEFFI-NLDKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEE-EEEcC--CC-HHHHHHHHHHHHHhC
Confidence            35556668999999999999999999999999986  33333 4699999 76775  22 344677788888775

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.98  E-value=0.0075  Score=45.27  Aligned_cols=48  Identities=23%  Similarity=0.341  Sum_probs=36.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEE
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFIT  156 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~  156 (419)
                      +.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            568889999999999999999999999998877654322 333344443

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.95  E-value=0.0044  Score=47.69  Aligned_cols=64  Identities=11%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      +-+.-.|+||-|+++...|+.+|||+.+.++..  ..+.. -.+.||+ |.+|   . ...-+++++.+++.
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP--~~~~~-~~y~Ffv-d~~~---~-~~~~~~~l~~L~~~   66 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP--SRRNG-SEYEFFV-DCEV---D-RGDLDQLISSLRRV   66 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC--CCCCC-ceEEEEE-EEEc---C-hHHHHHHHHHHHHh
Confidence            344557899999999999999999999999986  33333 5799999 7677   2 22346666766654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.91  E-value=0.0076  Score=53.40  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..|+|...|+||.|++|++.|+++|+||.+..+..+. .+...-+|.|..      ++...+.|...|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            4689999999999999999999999999999887654 355555555542      2456778888888765

acetohydroxyacid synthase is a synonym.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.88  E-value=0.0058  Score=46.83  Aligned_cols=34  Identities=24%  Similarity=0.560  Sum_probs=31.8

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT  143 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T  143 (419)
                      .|.|.+.||+|++++|+.++++.|+||.+..+.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~   35 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP   35 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence            4789999999999999999999999999999875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.85  E-value=0.0095  Score=52.98  Aligned_cols=65  Identities=15%  Similarity=0.239  Sum_probs=50.5

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..|+|...|+||.|++|++.|+++|+||.+..+..+. .+...-+|.|..      ++..++.+...|.++.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            4689999999999999999999999999998887554 355555555542      3556778888888765

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.84  E-value=0.0073  Score=46.31  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=47.6

Q ss_pred             EEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       345 ~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      -+.-.|+||.|++|...|+++|+|+.+.++..  ..+.. ..+.||+ |.+|.+-  +..-+.+++.+++.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp--~~~~~-~~~~f~i-d~~~~~~--~~~~~~~l~~l~~~   67 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRP--SRKGL-WEYEFFV-DFEGHID--DPDVKEALEELKRV   67 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee--cCCCC-ceEEEEE-EEECCCC--CHHHHHHHHHHHHh
Confidence            34457999999999999999999999998774  33322 6789999 6666321  23446777777764

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.81  E-value=0.0064  Score=54.74  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=32.7

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      +.+.+.+.||||+|.+|+.+|+++|+||.++.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            36899999999999999999999999999999964

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.80  E-value=0.0088  Score=45.39  Aligned_cols=63  Identities=19%  Similarity=0.296  Sum_probs=42.1

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .|.|.+.|+||++++++.+|+++|+||.+....+..+ +.+.-.|.+..     .+...++++.+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHHc
Confidence            4788999999999999999999999999887754323 44433333322     133444444444443

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.79  E-value=0.014  Score=45.34  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=38.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcC
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN  158 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~  158 (419)
                      +.+.+..+|+||.|+++...|+++|+||.+.......++...-.|+|.-.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            35677789999999999999999999999887664434445566777543

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.79  E-value=0.0085  Score=46.38  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      +.+.+...|+||.|++++++|+..|.||.+..+.-+.++ ..--++.| . +     +..++.|.+.|.++.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcCc
Confidence            578999999999999999999999999999998755443 33334444 2 1     334567777777654

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.78  E-value=0.0077  Score=44.95  Aligned_cols=60  Identities=17%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee------cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST------DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t------dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      +.|..+|+||++++|+.+|+++|+||.+.....      .|.. ...|.+...+.  ...+.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~-~~~i~v~~~~~--~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEV-EVELTLETRGA--EHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceE-EEEEEEEeCCH--HHHHHHHHHHHH
Confidence            357789999999999999999999999888664      2443 34455533321  144556566654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.73  E-value=0.0078  Score=44.58  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEE
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLL  391 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~  391 (419)
                      +.+...|+||++.+|+.+|++.|+||.++.+......+.  ....|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~--~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGI--AYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCE--EEEEEEc
Confidence            567899999999999999999999999999865221122  5667766

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.66  E-value=0.013  Score=43.48  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=43.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .+.+.+.|+||++++++.+|+++|+||.+....+. .++.+.-.|.+..     .+ ..++.+.+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence            36788999999999999999999999999888754 2444444444432     12 445555555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.64  E-value=0.0086  Score=44.76  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=32.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      ..+.|..+|+||.|++++..|+++|+||.+..++..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~   37 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT   37 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec
Confidence            468889999999999999999999999999988754

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.63  E-value=0.0069  Score=43.55  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE  393 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d  393 (419)
                      +++...|+||.+.+++..|.++|+||.++.+.... ++.  +...|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~--~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEF--GILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCc--EEEEEEECC
Confidence            35678999999999999999999999999987632 233  788888855

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.62  E-value=0.0094  Score=45.94  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      +-+.-.|+||-|+++-..|+.+|+|+.+++++.  ..+.. -.+.||+ |.+|..    ..-+.+++.+++.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~-~~y~F~i-d~e~~~----~~i~~~l~~l~~~   66 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRS-SEFEIFV-DCECDQ----RRLDELVQLLKRE   66 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEE-EEEcCH----HHHHHHHHHHHHh
Confidence            334457999999999999999999999999986  33333 5699999 666643    1456777777764

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.60  E-value=0.016  Score=44.78  Aligned_cols=65  Identities=11%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      ..+.+...|+||+|..++.+|...|+||.+-.+.. |.......+.++- .|    +++..+.|.++|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~-te~~~~sriti~~-~~----~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE-RDTSGVSEMKLTA-VC----TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc-cCCCCeeEEEEEE-EC----CHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999988874 3333333333331 12    346778888887544

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.60  E-value=0.0074  Score=44.90  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVR  413 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~  413 (419)
                      .+.+.+.|+||++.+++.+|++.|++|.++...+...++.  +...|.+...      + ....++++.++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~------~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGI--SRITIVVEGD------D-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCe--EEEEEEEECC------H-HHHHHHHHHHh
Confidence            4678899999999999999999999999999765211222  4555555322      1 23356666655

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK07431 aspartate kinase; Provisional

Probab=96.59  E-value=1.4  Score=47.42  Aligned_cols=191  Identities=14%  Similarity=0.125  Sum_probs=112.2

Q ss_pred             CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc--
Q 014754           18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV--   92 (419)
Q Consensus        18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~--   92 (419)
                      .+...|+|++.   +.+|+.+++..+|++.|.||....  +.+.-  ..|.|...     +.++..+.|.+.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~--Is~vv~~~-----d~~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVK--VSCVIDAE-----DGDKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCE--EEEEEcHH-----HHHHHHHHHHHHhccCCccc
Confidence            35678889885   899999999999999999997544  33331  35555322     234444666666633221  


Q ss_pred             cccc---ccCC----CCCCCCCeEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeecC--CeEEEEEEEEcCCCCC
Q 014754           93 SFYF---NQLS----TRPTCSPVYLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTPD--GRVLDLFFITDNRELL  162 (419)
Q Consensus        93 ~~~~---~~~~----~~~~~~~~~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~--~~~~d~F~V~~~~g~~  162 (419)
                      ...+   ++..    .-........|++. .++.+|+++++.+.|+++|+||..-......+  |..--.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence            0111   0000    00122345556654 47889999999999999999999553321112  12222344422     


Q ss_pred             CCHHHHHHHHHHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEe
Q 014754          163 HTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVD  242 (419)
Q Consensus       163 ~~~~~~~~l~~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~  242 (419)
                         ++.....+.+++ +....                                                   ....+.++
T Consensus       492 ---~~~~~~~~~l~~-l~~~~---------------------------------------------------~~~~i~~~  516 (587)
T PRK07431        492 ---EDREAAQKVLRE-LAKQL---------------------------------------------------PGAEVEDG  516 (587)
T ss_pred             ---HHHHHHHHHHHH-HHHhc---------------------------------------------------CCceEEEe
Confidence               222233222333 21110                                                   00123332


Q ss_pred             CCCCCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEE
Q 014754          243 NSLSPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGR  281 (419)
Q Consensus       243 n~~~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~  281 (419)
                          .+...|.+.|.   .+||++.++..+|.+.|+++....
T Consensus       517 ----~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        517 ----PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             ----CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence                35678888886   689999999999999999995544

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.59  E-value=0.016  Score=43.32  Aligned_cols=58  Identities=19%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ..++|..+|+||.+++++..|+++|+||....++..+.-  .++.+.. +    +.+.+.+.|++
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~-~----~~~~~~~~L~~   59 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV-S----DPDKAKEALKE   59 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE-C----CHHHHHHHHHH
Confidence            468899999999999999999999999999998764332  3444433 2    24445455554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.53  E-value=0.0097  Score=44.06  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFI  155 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V  155 (419)
                      +.|.+.|++|++++++.+|+++|+||.+..+.... ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999987543 3566666666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.46  E-value=0.023  Score=42.10  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFI  155 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V  155 (419)
                      +.+..+|+||.+++++..|+++|+||.+...... .++...-.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            5788999999999999999999999998887642 23444433433

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.45  E-value=0.029  Score=48.43  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ...+.|.|.+.|+||+|++++++|+++|+||.+....+.. ++.+.-.|.+.-.+.    +..++.+.+.|.+
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK  122 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence            3588999999999999999999999999999988877654 343434443432211    1234555555544

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.45  E-value=0.023  Score=43.21  Aligned_cols=62  Identities=10%  Similarity=0.042  Sum_probs=44.4

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHH-HHHHHHHHHH
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPE-KQSAICSRLK  318 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~-~~~~l~~~L~  318 (419)
                      .+.+.+.||||+|++|+.+++++|+||......+ ..++.+.=.|.+...     +.+ +++.|.++|.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTS-----TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcC-----chHHHHHHHHHHHh
Confidence            4789999999999999999999999999887653 123333333545432     233 6777777764

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.43  E-value=0.017  Score=42.50  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=34.2

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFI  155 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V  155 (419)
                      +.|..+|+||-|+++++.|+++|+||.+...+... .+...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67888999999999999999999999987765432 2444333433

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.42  E-value=0.012  Score=44.98  Aligned_cols=37  Identities=14%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCc
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGI   58 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~   58 (419)
                      .+.|.+.||+|++++|+.++++.|.||.+.++.++|.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~~~   38 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGR   38 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecCCe
Confidence            4789999999999999999999999999999887643

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.39  E-value=0.0096  Score=45.18  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=43.4

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+.+.+.|+||++.+++..|++.|+||..+...... ++.. +.-.|.+...      +...-+++++.+++
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~-~~~~-~~~~i~~~~~------~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD-GGET-APVVIVTHET------SEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC-CCCc-eeEEEEEccC------CHHHHHHHHHHHHc
Confidence            578889999999999999999999999999865421 2121 3334444222      24444566666664

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.37  E-value=0.027  Score=38.64  Aligned_cols=46  Identities=35%  Similarity=0.523  Sum_probs=35.0

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT  156 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~  156 (419)
                      |.+.++|++|++++++++|+.+|++|...............+++..
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV   46 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence            4688999999999999999999999999887653222333444444

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.37  E-value=0.024  Score=42.49  Aligned_cols=61  Identities=21%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeec--CcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTD--GIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~td--G~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ..+.|..+|+||.++++++.|+++|+||.....+..  +......+.+..++    ..+++.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE----DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH----HHHHHHHHHHH
Confidence            468889999999999999999999999998887652  31122345553221    34566566665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.36  E-value=0.018  Score=43.38  Aligned_cols=46  Identities=26%  Similarity=0.418  Sum_probs=36.5

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFIT  156 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~  156 (419)
                      +.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            4568999999999999999999999998877543 345666666554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.35  E-value=0.015  Score=43.77  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             EEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEE
Q 014754          345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLD  392 (419)
Q Consensus       345 ~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~  392 (419)
                      -+.+.|+||.+.++++.|+++|+||.+..+.....++.  +...|.+.
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v~   48 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSVD   48 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEeC
Confidence            45789999999999999999999999988754222222  56666663

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=96.32  E-value=0.041  Score=48.24  Aligned_cols=71  Identities=24%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ...+....|.+...|+||+|++|+++|+++|+||.........+|.+.-.|.+...+.    ...++.|.+.|+.
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~----~~~L~~Li~~L~~  134 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM----EGDIDELLEKLRN  134 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh----HHHHHHHHHHHHc
Confidence            3456788999999999999999999999999999987765434566655666654221    1245555555554

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.31  E-value=0.034  Score=41.34  Aligned_cols=59  Identities=20%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeec--CcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTD--GIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~td--G~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ++.+.++|+||.+++++..|+++++||.+.....+  |.+ .-.|.+... .   ..+.+.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~-~---~~~~~~~~L~~   62 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKA-RIYMELEGV-G---DIEELVEELRS   62 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeE-EEEEEEecc-c---cHHHHHHHHhC
Confidence            57889999999999999999999999998887653  443 334555332 1   34455455554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.30  E-value=0.022  Score=42.43  Aligned_cols=46  Identities=22%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                      .+.+.++|+||.+++++..|+++++||.+....+..++...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            5788999999999999999999999999888764333444333333

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.29  E-value=0.026  Score=44.39  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=48.0

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      ++.+...|+||+|.+++..|...|+||.+-.+.. |.-.....+=++ .. |    |++..+++.++|.+.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~~-~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVDI-Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEeC-C----CHHHHHHHHHHHhCCc
Confidence            6889999999999999999999999999999985 443333332232 21 2    4567788888875443

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.19  E-value=0.048  Score=39.37  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=34.8

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                      |.|.++|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~   45 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL   45 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence            467899999999999999999999999998875332444333444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.18  E-value=0.033  Score=44.90  Aligned_cols=66  Identities=9%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKME  320 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~  320 (419)
                      ...+|.+...|+||+|..|+..|+..|+||.+-.+.. |.-....-+.++-. +     ++.+++|.++|.+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~-te~~~iSRmtivv~-~-----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP-IQDGDKSRIWLLVN-D-----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee-cCCCCceEEEEEEc-C-----chHHHHHHHHHhCC
Confidence            3456899999999999999999999999999998875 33333333334321 2     25678888887544

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.18  E-value=0.031  Score=41.42  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      +.+...||||++.+++..|+++|++|.++....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            567899999999999999999999999887653

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.12  E-value=0.036  Score=42.01  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT  143 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T  143 (419)
                      +.+..+|+||-|++++..|+++|.||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            678899999999999999999999999876653

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.10  E-value=0.07  Score=42.72  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             eCCCCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          242 DNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       242 ~n~~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      ++......|-|-+..+|+||-|+++...|+++|+|+.+-.-.-. .+....=.||++.+|.  .+ ...+.+.+.|...+
T Consensus         7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~-~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~   82 (90)
T cd04931           7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPS-RLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDI   82 (90)
T ss_pred             cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC-CCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHh
Confidence            33444455777777799999999999999999999988776531 2333333578888875  23 34444445554443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.08  E-value=0.03  Score=43.33  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=32.7

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      +.+++...++||+|..++..|+..|+||.++....
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~   38 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ   38 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence            46888999999999999999999999999999975

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.04  E-value=0.04  Score=48.85  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      .+.+.-.|+||.|.+|+..|+++|+||.++.+..
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~   36 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP   36 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee
Confidence            5788899999999999999999999999998775

acetohydroxyacid synthase is a synonym.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.02  E-value=0.0077  Score=45.02  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      +-+.+.||||++.+++..|++.|+||..+...+  .++.  +...|.+...    ..     +.+++++++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~~~----~l-----~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDIDSE----VS-----EELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcCCC----CC-----HHHHHHHHc
Confidence            446789999999999999999999998887654  3333  6666666332    22     467777664

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.95  E-value=0.075  Score=39.94  Aligned_cols=59  Identities=24%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      +.+.+..+|+||.++++++.|+++|+||.+.....   .|. ..-+|.+.. .    ..+.+.+.|++
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~-~~v~i~v~~-~----~~~~~~~~L~~   63 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDN-KILVFRVQT-M----NPRPIIEDLRR   63 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCe-EEEEEEEec-C----CHHHHHHHHHH
Confidence            57899999999999999999999999999887553   344 345566633 2    23456566655

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=95.93  E-value=0.052  Score=48.32  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      .+.+.-.|+||.|.+|+..|+++|+||.++.+..
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~   37 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP   37 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee
Confidence            6788899999999999999999999999998765

>PRK08577 hypothetical protein; Provisional

Probab=95.93  E-value=0.13  Score=44.48  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           17 PGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        17 ~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ....+.+.|.+.|+||++++++++|++++.||.+....+  .+..+...|.+.-++. ....+.+.+.|++
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~  122 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKK  122 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence            334788999999999999999999999999999887664  2332233444432321 0135556555554

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.76  E-value=0.046  Score=40.67  Aligned_cols=57  Identities=19%  Similarity=0.350  Sum_probs=38.3

Q ss_pred             CcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          117 DRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       117 DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      |+||.|.+|+++|...|+||.+..+..+.+ +..--++.+.. .     +...+.|...|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-~-----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-D-----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-C-----chhHHHHHHHHhccC
Confidence            789999999999999999999999986444 44433444432 1     224556777776654

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.74  E-value=0.056  Score=40.97  Aligned_cols=33  Identities=18%  Similarity=0.075  Sum_probs=29.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754           23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST   55 (419)
Q Consensus        23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t   55 (419)
                      +.|..+|+||-+++++..|+++|+||.+...+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            678899999999999999999999999887654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.73  E-value=0.015  Score=43.44  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=34.6

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                      +.+.+.|+||++++++.+|+++|+||......+ .++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEc
Confidence            567899999999999999999999998876653 23555444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK04435 hypothetical protein; Provisional

Probab=95.56  E-value=0.18  Score=44.15  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=51.8

Q ss_pred             EeCCCCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754          241 VDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       241 v~n~~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      |+.........|.+...|+||+|++|..+++++|+||..-.... ..++.+.=.|-++..+.    ..+++.|.++|.
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~----~~~L~~Li~~L~  133 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM----EGDIDELLEKLR  133 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh----HHHHHHHHHHHH
Confidence            45556778899999999999999999999999999998877653 23343433354543221    136777777763

>PRK11899 prephenate dehydratase; Provisional

Probab=95.55  E-value=0.048  Score=52.97  Aligned_cols=66  Identities=8%  Similarity=0.004  Sum_probs=48.9

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+-+.-.|+||.|+++...|+++|||+.+++++.  ..+.. -.+.||+ |.+|..-+ +.. ++.++.|++
T Consensus       196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP--~~~~~-~~Y~F~i-d~eg~~~d-~~v-~~aL~~l~~  261 (279)
T PRK11899        196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESYM--VGGSF-TATQFYA-DIEGHPED-RNV-ALALEELRF  261 (279)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee--cCCCC-ceEEEEE-EEECCCCC-HHH-HHHHHHHHH
Confidence            4444557999999999999999999999999986  44444 5899999 88885433 333 444555544

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.54  E-value=0.051  Score=39.83  Aligned_cols=33  Identities=12%  Similarity=-0.005  Sum_probs=28.8

Q ss_pred             EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754          344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR  376 (419)
Q Consensus       344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t  376 (419)
                      +.+.-.||||.+.+++..|+++|+||.++....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~   34 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV   34 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence            456678999999999999999999999887654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.45  E-value=0.08  Score=38.11  Aligned_cols=47  Identities=28%  Similarity=0.257  Sum_probs=35.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecC-cEEEEEEEEecC
Q 014754           23 ITVNCPDKTGLGCDICRIILDFGLYITKGDISTDG-IWCYIVLWVVPH   69 (419)
Q Consensus        23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG-~~~~d~f~V~~~   69 (419)
                      +.|.++|+||.+.+++..|.+++++|.+..+...+ ......|.+..+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   48 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR   48 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence            35778999999999999999999999999887632 322334444333

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=95.39  E-value=0.045  Score=45.93  Aligned_cols=66  Identities=8%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      +.+-+.-.|+||-|+++-..|+++|||+.++++..  ..+.. -.+.||+ |.+|.. .   .-..+++.|+..
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~-~eY~FfI-dieg~~-~---~~~~aL~~L~~~  107 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEG-GDLEVLV-RCEVHR-S---DLLQLISSLRQV  107 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCC-ceEEEEE-EEEeCH-H---HHHHHHHHHHHh
Confidence            35555668999999999999999999999999986  32332 4689999 666643 1   356666777654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.39  E-value=0.1  Score=39.22  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEE
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFIT  156 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~  156 (419)
                      +.+.+..+|+||.+.+++..|+++|+||.+....-. .++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            468889999999999999999999999997765422 234554455553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.37  E-value=0.12  Score=52.93  Aligned_cols=67  Identities=22%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee----cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT----PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~----~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ...+.|.|.+.||||+|++|+.+|++.++||.+....+.    .++.+.-.|.+.-.     +.+.++.+.+.|++
T Consensus       324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA  394 (403)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999988753    34555444444322     34566666666665

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.25  E-value=0.13  Score=35.12  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754           23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST   55 (419)
Q Consensus        23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t   55 (419)
                      |.+.++|++|++++++++|+.++++|.......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            468899999999999999999999999998765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK06291 aspartate kinase; Provisional

Probab=95.05  E-value=0.98  Score=47.21  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|++.+.   +.||+++++..+|.++|++|..-.-++  .....  .|.++.        +..+...+.|...+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sI--sf~V~~--------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNI--SLVVDE--------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceE--EEEEeH--------HHHHHHHHHHHHHHHH
Confidence            45678888875   689999999999999999998754331  12222  255543        1222223333333322


Q ss_pred             --CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754          324 --PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       324 --~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                        ...+.+...        -..+.+.|.   ++||+...+..+|++.|+||....-.
T Consensus       387 ~~~~~i~~~~~--------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg  435 (465)
T PRK06291        387 GLVRDVTFDKD--------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG  435 (465)
T ss_pred             hcCcceEEeCC--------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence              111222111        126788885   79999999999999999999866533

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=95.00  E-value=0.099  Score=46.12  Aligned_cols=60  Identities=23%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      -+.+.+.|+||.+.+++++++++|.||.-++.+.  ||..++..|.+...+    +.+.|.+++++
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~----d~e~l~~~lks   65 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID----DFEKLLERLKS   65 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC----CHHHHHHHhhc
Confidence            4678899999999999999999999999999774  886555556663332    57777666665

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.95  E-value=0.19  Score=38.54  Aligned_cols=49  Identities=10%  Similarity=0.118  Sum_probs=36.6

Q ss_pred             EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCC
Q 014754          252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDG  301 (419)
Q Consensus       252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g  301 (419)
                      +-+..+|+||-|+++...|+.+|+|+.+-.-.-. .+....=.|+++.+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~-~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPS-RRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCC-CCCCceEEEEEEEEc
Confidence            4455589999999999999999999987765531 233333457888877

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.75  E-value=2  Score=43.81  Aligned_cols=133  Identities=20%  Similarity=0.262  Sum_probs=79.5

Q ss_pred             CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+...|+|.+   .++||++.++..+|.+.|+++..-.-..  .....  .|+++.        +..++..+.|......
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~--s~~~I--s~~V~~--------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP--SETSI--SLTVDE--------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC--CCceE--EEEEeH--------HHHHHHHHHHHHHHHh
Confidence            3567788884   5789999999999999999997554321  11112  255542        1233333344333211


Q ss_pred             -C-ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCC
Q 014754          324 -P-LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQ  398 (419)
Q Consensus       324 -~-~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~  398 (419)
                       . ..+.+. +.       -..+.+.|.   ++||++..+.++|++.|+||....  +   +.   -.-.|.+       
T Consensus       326 ~~~~~i~~~-~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~---s~---~~is~vv-------  382 (401)
T TIGR00656       326 AGLDRVEVE-EG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--S---SE---TNISFLV-------  382 (401)
T ss_pred             cCCceEEEe-CC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c---CC---CEEEEEE-------
Confidence             0 111111 11       126778885   789999999999999999998644  2   11   1223444       


Q ss_pred             CcchHHHHHHHHHHHHHH
Q 014754          399 LSSMVAREQIVDRVRRAL  416 (419)
Q Consensus       399 ~~~~~~~~~~~~~~~~~l  416 (419)
                        +.++-.+.+..|.+++
T Consensus       383 --~~~d~~~av~~Lh~~f  398 (401)
T TIGR00656       383 --DEKDAEKAVRKLHEVF  398 (401)
T ss_pred             --eHHHHHHHHHHHHHHH
Confidence              2345566677776654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06635 aspartate kinase; Reviewed

Probab=94.73  E-value=1.7  Score=44.41  Aligned_cols=108  Identities=15%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             EEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccccccc
Q 014754          109 YLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCE  187 (419)
Q Consensus       109 ~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~~  187 (419)
                      ..|++. ..++||+++++..+|+++|+||.........++..--.|.|.        .++.+...+.|.+. ....    
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~----  329 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEI----  329 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHc----
Confidence            345554 367899999999999999999995544322222333445443        22223333334331 1110    


Q ss_pred             cccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEE---cCcchHHH
Q 014754          188 LQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHC---VDHKGLLY  264 (419)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~---~DrpGLL~  264 (419)
                                                                     ....+.+.    ++..++++.|   .|+||.++
T Consensus       330 -----------------------------------------------~~~~i~~~----~~ia~isvvG~~~~~~~g~~a  358 (404)
T PRK06635        330 -----------------------------------------------GAESVTYD----DDIAKVSVVGVGMRSHPGVAA  358 (404)
T ss_pred             -----------------------------------------------CcceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence                                                           00123322    3466788876   68999999


Q ss_pred             HHHHHHHhCCeEEEEE
Q 014754          265 DIMRTLKDCNMKISYG  280 (419)
Q Consensus       265 ~i~~~l~~~g~~I~~a  280 (419)
                      ++.++|.+.|+||...
T Consensus       359 ~i~~~La~~~Ini~~i  374 (404)
T PRK06635        359 KMFEALAEEGINIQMI  374 (404)
T ss_pred             HHHHHHHHCCCCEEEE
Confidence            9999999999999774

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.63  E-value=0.35  Score=36.80  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=40.6

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      +.+..+|+||-|+++...|+++|+||.+....-..+....-.||+.-. +. .++...+.+-+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~-~~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GH-IDDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence            345568999999999999999999999775543333233344555432 32 123344444455544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.52  E-value=0.046  Score=43.17  Aligned_cols=63  Identities=16%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             EEEEEecC-cccHHHHHHHHHHhCCceEEEEEEEeec--------CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          110 LLKLFCLD-RKGLLHDVTQVLCELELSIQRVKVTTTP--------DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       110 ~i~v~~~D-rpGLl~~i~~~l~~~glnI~~a~i~T~~--------~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      +|+|.|.| ..|++++++++|+++|+||.+.+-.+..        .+...-.|.|..+.      ...+.|++.|.+.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~l   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLEL   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHHH
Confidence            47999999 9999999999999999999954442110        12344556665322      2356788887765

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06635 aspartate kinase; Reviewed

Probab=94.47  E-value=1.2  Score=45.50  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             CeeEEEEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc--CC
Q 014754          248 AHTLLQIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML--HP  324 (419)
Q Consensus       248 ~~tvi~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~--~~  324 (419)
                      +...|++.+ .++||++.++..+|.+.|++|.....+. +.++...=.|.++.        +..+...+.|.....  ..
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHHHHHHcCc
Confidence            345555554 5689999999999999999999654432 11111221255532        222333333333110  00


Q ss_pred             ceEEEecCCCCcccccceeEEEee---CCCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 LRVIIANRGPDTELLVANPVELCG---KGRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~~v~i~~~~~~~~~~~~~~~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ..+.+. ..       ...+.+.|   .++||++.++.++|++.|+||....
T Consensus       332 ~~i~~~-~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYD-DD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEc-CC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            112111 11       23677777   5899999999999999999998875

>PRK08210 aspartate kinase I; Reviewed

Probab=94.45  E-value=1.7  Score=44.54  Aligned_cols=100  Identities=17%  Similarity=0.308  Sum_probs=66.6

Q ss_pred             CCeeEEEEEEcCc-chHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754          247 PAHTLLQIHCVDH-KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL  325 (419)
Q Consensus       247 ~~~tvi~v~~~Dr-pGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~  325 (419)
                      .+...++|.+.+. ||.+.+|..+|.+.|++|.....+.    +..  .|.++.        +..+++.+.|.. +.  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~----~~i--s~~v~~--------~~~~~a~~~l~~-~~--~  331 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP----TEV--VFTVSD--------EDSEKAKEILEN-LG--L  331 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC----ceE--EEEEcH--------HHHHHHHHHHHH-hC--C
Confidence            4566778877665 9999999999999999998874431    212  255532        223444444332 21  1


Q ss_pred             eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEE
Q 014754          326 RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFS  371 (419)
Q Consensus       326 ~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~  371 (419)
                      .+.+...        -..+.+.|.   ++||++..+..+|.+.|+||..
T Consensus       332 ~v~~~~~--------~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 KPSVREN--------CAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             cEEEeCC--------cEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            2222111        126777785   8999999999999999999975

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.43  E-value=0.039  Score=43.58  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             EEEEEcCC-CCChHHHHHHHHHhCCceEEEEEeee-----c-----CcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           22 VITVNCPD-KTGLGCDICRIILDFGLYITKGDIST-----D-----GIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        22 ~v~V~~~D-rpgL~~~i~~~l~~~~lnI~~A~i~t-----d-----G~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      .|||+++| ..|++++++++|+++|+||.+-+-.+     .     ... ...|.|..+.   .+.+.+++.|.+.-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~-~~e~~v~~~~---~~~~~lr~~L~~la   73 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKA-CVEFSVRGQP---ADLEALRAALLELA   73 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcE-EEEEEEeCCC---CCHHHHHHHHHHHh
Confidence            37999999 99999999999999999998755211     1     232 4677776444   36788888887643

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.37  E-value=0.32  Score=37.40  Aligned_cols=51  Identities=4%  Similarity=-0.011  Sum_probs=37.5

Q ss_pred             EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      +-+..+|+||-|+++...|+.+|+|+.+-.-... .+....=.||++.+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~-~~~~~~y~F~id~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKS-KRRSSEFEIFVDCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC-CCCCceEEEEEEEEcCH
Confidence            3444589999999999999999999988776531 23333345788887754

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.24  E-value=0.4  Score=46.61  Aligned_cols=54  Identities=11%  Similarity=0.092  Sum_probs=41.2

Q ss_pred             eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      -|.|-+..+|+||.|+++..+|+++|+|+.+-.-.- +.+....=+||++.+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP-~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYM-VGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee-cCCCCceEEEEEEEECCC
Confidence            466666778999999999999999999998766553 133334446789988854

>PLN02551 aspartokinase

Probab=94.05  E-value=2.3  Score=45.11  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      ..+.++|+|.+.   +.+|++.++...|.++|++|..-.  +  .....  .|.++.+.  +...+.+++....|...+.
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s--Se~sI--s~~v~~~~--~~~~~~i~~~l~~l~~el~  434 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T--SEVSI--SLTLDPSK--LWSRELIQQELDHLVEELE  434 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c--cCCEE--EEEEehhH--hhhhhhHHHHHHHHHHHhh
Confidence            345688999876   589999999999999999998763  2  12222  26665421  1111111111112222333


Q ss_pred             CCceEEEecCCCCcccccceeEEEeeC--CCCccHHHHHHHHHHcCceEEEEEee
Q 014754          323 HPLRVIIANRGPDTELLVANPVELCGK--GRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~--DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                      +...+.+...        -..+.+.|.  .+||++..+..+|++.||||....-.
T Consensus       435 ~~~~V~v~~~--------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg  481 (521)
T PLN02551        435 KIAVVNLLQG--------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG  481 (521)
T ss_pred             cCCeEEEeCC--------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence            3222332211        125677765  68999999999999999999887744

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.00  E-value=0.29  Score=53.69  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .....|.|.+.||+|+|++|+.+++..++||.+..+.+.. ++.+.-.|.|.-.     +-+.+..|...|+.
T Consensus       664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            3467899999999999999999999999999999987543 5665555555322     34455566555554

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=93.98  E-value=0.44  Score=35.37  Aligned_cols=56  Identities=16%  Similarity=0.110  Sum_probs=38.9

Q ss_pred             CCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           29 DKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        29 DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      |+||.+.+++++|...|.||.+-.+..  ++...--++.|...+ .  ..+.|...|++..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~-~--~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD-R--EIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C-C--HHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc-h--hHHHHHHHHhccC
Confidence            789999999999999999999999875  444332344443322 2  5666777777654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.96  E-value=0.23  Score=50.52  Aligned_cols=67  Identities=7%  Similarity=-0.001  Sum_probs=49.3

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      +++-+.-.|+||.|+++-..|+.+|||+.++++..  ..+.. -.|.||+ |.+|..-+ +. .+..++.|+.
T Consensus       298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP--~~~~~-~~Y~Ffi-d~eg~~~d-~~-~~~aL~~l~~  364 (386)
T PRK10622        298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP--IHGNP-WEEMFYL-DVQANLRS-AE-MQKALKELGE  364 (386)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee--cCCCC-ceEEEEE-EEeCCCCC-HH-HHHHHHHHHH
Confidence            34555557999999999999999999999999985  33443 6899999 87884433 33 3445555554

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.84  E-value=0.41  Score=52.58  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             EEEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCC-CCeeEEEEEEecCCCcCCCHHHHHHHHH
Q 014754          238 NVVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ-GYRDLDLFIQQKDGKKIVDPEKQSAICS  315 (419)
Q Consensus       238 ~V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~-g~~~~D~F~v~~~g~~~~d~~~~~~l~~  315 (419)
                      .|.++.. .......|.|.+.||+|||.+|+.++++.++||....+.+. . ++.+.-.|.+..     .+-+++..|..
T Consensus       654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~-~~~~~~~~~~~ieV-----~~~~~L~~l~~  727 (743)
T PRK10872        654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSD-TKQQLATIDMTIEI-----YNLQVLGRVLG  727 (743)
T ss_pred             EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCCEEEEEEEEEE-----CCHHHHHHHHH
Confidence            3555543 22345789999999999999999999999999999998752 2 343333344432     34567788877


Q ss_pred             HHH
Q 014754          316 RLK  318 (419)
Q Consensus       316 ~L~  318 (419)
                      .|.
T Consensus       728 ~L~  730 (743)
T PRK10872        728 KLN  730 (743)
T ss_pred             HHh
Confidence            764

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.61  E-value=0.36  Score=52.87  Aligned_cols=66  Identities=11%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ..+.|.|.+.||+|+|++|+.+++..++||.++++.+..++.+.-.|.+.-.     +-+.+..|-..|+.
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4668999999999999999999999999999999876444555445544322     23455555555554

>PRK07334 threonine dehydratase; Provisional

Probab=93.59  E-value=0.45  Score=48.73  Aligned_cols=66  Identities=11%  Similarity=0.065  Sum_probs=47.6

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecC---CCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNS---QGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t---~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      ..+-|.|.+.||||+|.+|+.+|.+.++||.+....+..   .++.+.=.|.+..     .+.++++.+.+.|+
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr  393 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALR  393 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHH
Confidence            347899999999999999999999999999999887420   1222222233332     34577888888775

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.56  E-value=0.39  Score=44.58  Aligned_cols=49  Identities=10%  Similarity=0.043  Sum_probs=40.6

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEE
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLD  392 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~  392 (419)
                      +.+-+.-.||||++..|+..|.++||||-.+.+.+...++.  |.....++
T Consensus       149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~--Ai~vl~vD  197 (208)
T TIGR00719       149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNI--ALLTIEID  197 (208)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCE--EEEEEEeC
Confidence            36667779999999999999999999999999998555444  77777773

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.45  E-value=0.28  Score=47.38  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS  400 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~  400 (419)
                      +.+-+.-.|+||-|+++-..|+.+|||..+++++.  ..+.. -.+.||+ |.+|..-+
T Consensus       195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP--~k~~~-~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRP--LKTGL-GEYLFFI-DIEGHIDD  249 (279)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecc--cCCCC-eeEEEEE-EEecCcCc
Confidence            35555556999999999999999999999999985  44444 6899999 87777655

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.45  E-value=0.34  Score=45.02  Aligned_cols=47  Identities=15%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeE
Q 014754          246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDL  292 (419)
Q Consensus       246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~  292 (419)
                      .+....+-+.-.||||.+..++..|.++|+||...++.+...|+.+.
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai  191 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL  191 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence            34556777788999999999999999999999999999854566555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.40  E-value=0.6  Score=34.93  Aligned_cols=60  Identities=17%  Similarity=0.182  Sum_probs=38.7

Q ss_pred             EEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          112 KLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       112 ~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .|.-+||||-|.+++.+++. |.||....-... +.....+++...-.    +++..+++.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~-~~~~~~v~v~ie~~----~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQ-GGDEARVLVGIQVP----DREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC-CCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            56789999999999999999 999997655422 21222333333221    34555666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.37  E-value=2.9  Score=42.73  Aligned_cols=106  Identities=13%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             CcEEEEEE---cCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVN---CPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~---~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +...|+|.   .++++|+++++...|.+++.||.--.......  --.|.|...     +.++..+.|.+.+....    
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~-----d~~~a~~~L~~~~~~~~----  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDET-----DADEAVRALKDQSGAAG----  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHH-----HHHHHHHHHHHHHHhcC----
Confidence            45677888   57899999999999999999997433221112  134555221     23333344544331100    


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQR  138 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~  138 (419)
                         ............|.|++.   ++||+++++..+|++.|+||..
T Consensus       328 ---~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 ---LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             ---CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence               000012235778888885   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.99  E-value=0.65  Score=50.94  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             EEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754          239 VVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL  317 (419)
Q Consensus       239 V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L  317 (419)
                      |.++.. .....+.|.|.+.||+|+|.+|+.++++.++||.+....+. .+..+.-.|-+..     .+.+++..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV-----~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTA-----RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence            555543 22345789999999999999999999999999999998752 3333332343332     3356778887776


Q ss_pred             H
Q 014754          318 K  318 (419)
Q Consensus       318 ~  318 (419)
                      .
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            4

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.97  E-value=2.7  Score=47.10  Aligned_cols=113  Identities=12%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|+|.+.   ++||++.++..+|.++|++|....-++  .....  .|.++.+-  .  ....+.|.+.+...+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sI--sf~V~~~d--~--~~av~~L~~~f~~el~~  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSI--SFCVPQSD--A--AKAKRALEEEFALELKE  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceE--EEEEeHHH--H--HHHHHHHHHHHHHHhcc
Confidence            56788999876   589999999999999999997665432  12222  25664310  0  11223343333222221


Q ss_pred             -C-ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754          324 -P-LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       324 -~-~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                       . -.+.+...        -..+.+.|.   ++||+...+..+|.+.|+||....-.
T Consensus       385 ~~~~~i~~~~~--------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg  433 (819)
T PRK09436        385 GLLEPLEVEEN--------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG  433 (819)
T ss_pred             CCcceEEEeCC--------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence             1 11222111        226778885   78999999999999999999877633

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.83  E-value=0.81  Score=44.29  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEE-EEEEecCCCc
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLD-LFIQQKDGKK  303 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D-~F~v~~~g~~  303 (419)
                      ..|.|-+..+|+||-|+++..+|+.+|+|..+-.-.  ..+....+ +||+|.+|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR--P~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESR--PLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeec--ccCCCCeeEEEEEEEecCc
Confidence            578888888899999999999999999999877765  33444444 5688988865

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.76  E-value=0.54  Score=35.01  Aligned_cols=46  Identities=11%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             CCeEEEEEEec----CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754          106 SPVYLLKLFCL----DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD  157 (419)
Q Consensus       106 ~~~~~i~v~~~----DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~  157 (419)
                      .....|+|.++    |.||+++++++.|++.|+||....  |..    -|.|.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~~----~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SEI----SISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ESS----EEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Eee----eEEEEEeH
Confidence            35678889888    799999999999999999998555  322    26676754

>PRK09034 aspartate kinase; Reviewed

Probab=92.65  E-value=3.6  Score=42.90  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|++.+   .+++|+++++...|.++|++|..-  ++  ......  |.++.+  .+. ...+..+.+.|...+. 
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s--s~~sis--~~v~~~--~~~-~a~~~~l~~el~~~~~-  375 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS--GIDDLS--IIIRER--QLT-PKKEDEILAEIKQELN-  375 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC--CCcEEE--EEEeHH--Hhh-HHHHHHHHHHHHHhhC-
Confidence            3467788875   578999999999999999999875  32  222233  666431  111 0111333333332221 


Q ss_pred             CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                      ...+.+...        -..+.+.|.   ++||++..+..+|++.|+||......
T Consensus       376 ~~~I~~~~~--------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~  422 (454)
T PRK09034        376 PDELEIEHD--------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG  422 (454)
T ss_pred             CceEEEeCC--------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            112222111        226777764   78999999999999999999887643

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.59  E-value=0.62  Score=51.03  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ..+.|.|.+.||+|+|++|+.+++..++||.+.++.+..++.+.-.|.|.-.     +-..+..|-..|+.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999999999976444555444444322     23445555555443

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.51  E-value=0.38  Score=35.84  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             eEEEeeC----CCCccHHHHHHHHHHcCceEEEEE
Q 014754          343 PVELCGK----GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       343 ~~~v~g~----DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      .+.+.|.    |.||+++.++..|+++||||+...
T Consensus         8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            5666665    799999999999999999999888

>PRK09181 aspartate kinase; Validated

Probab=92.10  E-value=8  Score=40.57  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=70.7

Q ss_pred             CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|+|.+.   +.+|++.++..+|.++|++|.  .+++  ....+  .|.++.+      ...++++.+.|...+..
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s~~si--s~~v~~~------~~~~~~~~~~L~~~~~~  394 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--NANTI--THYLWGS------LKTLKRVIAELEKRYPN  394 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--cCcEE--EEEEcCC------hHHHHHHHHHHHHhcCC
Confidence            46788888765   689999999999999999998  3442  12222  3666432      12334454555443331


Q ss_pred             CceEEEecCCCCcccccceeEEEeeCC--CCccHHHHHHHHHHcCceEEEEEee
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGKG--RPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~D--RpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                       ..+..  .+       -..+.++|..  +||+...+..+|++.||||......
T Consensus       395 -~~i~~--~~-------~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        395 -AEVTV--RK-------VAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             -ceEEE--CC-------ceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence             12221  11       1267777754  8999999999999999999877754

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.98  E-value=1.1  Score=49.21  Aligned_cols=74  Identities=18%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             EEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754          239 VVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL  317 (419)
Q Consensus       239 V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L  317 (419)
                      |.++.. .....+.|.|.+.||+|+|.+|+.++++.++||.+..+.+. .++.+.-.|-+.     +.+-+++..|...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            455443 22456789999999999999999999999999999999752 223222123232     23456778777776


Q ss_pred             H
Q 014754          318 K  318 (419)
Q Consensus       318 ~  318 (419)
                      .
T Consensus       673 ~  673 (683)
T TIGR00691       673 K  673 (683)
T ss_pred             h
Confidence            4

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=91.96  E-value=1  Score=37.76  Aligned_cols=52  Identities=12%  Similarity=0.018  Sum_probs=38.8

Q ss_pred             eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCee-EEEEEEecCCC
Q 014754          249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRD-LDLFIQQKDGK  302 (419)
Q Consensus       249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~-~D~F~v~~~g~  302 (419)
                      .|-+-+..+|+||-|+++...|+++|+|+.+-.-..  ....- .=.||++.+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~~eY~FfIdieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEGGDLEVLVRCEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCCceEEEEEEEEeC
Confidence            456666669999999999999999999998876553  33322 22478888774

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=91.95  E-value=6.2  Score=41.24  Aligned_cols=109  Identities=14%  Similarity=0.088  Sum_probs=70.4

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +...|+|.+.   +.+|+++++.++|+++|+||.-..-.+....  -.|.|...     +.+...+.|.+.+.....   
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~-----d~~~av~~L~~~~~~~~~---  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEA-----DLEKALKALRREFGEGLV---  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHH-----HHHHHHHHHHHHHHHhcC---
Confidence            4567788764   7899999999999999999975432233332  35555322     222333445444322110   


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                          ..-........|.|+|.   +++|+.+++..+|++.|+||.-...
T Consensus       390 ----~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        390 ----RDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             ----cceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence                00012235678899885   7899999999999999999984433

>PRK06382 threonine dehydratase; Provisional

Probab=91.91  E-value=1.1  Score=46.06  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE----eecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT----TTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~----T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      ....+.++|.-+|+||-|++++..|.++|+||.+....    ....+...-+|.|...     +++..+.|.+.|++
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            44688999999999999999999999999999876653    2223455555555432     23344456555554

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.76  E-value=0.61  Score=41.27  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR  148 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~  148 (419)
                      -+.+.+.++||.|.++++.++++|.||..++.+...+|.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~   42 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE   42 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence            478889999999999999999999999999998765654

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.67  E-value=1.1  Score=48.81  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             EEEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHH
Q 014754          238 NVVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSR  316 (419)
Q Consensus       238 ~V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~  316 (419)
                      .|.++.. .....+-|.|.+.||+|||.+|+++|++.++||......+  .++++.++.+. .   .+.+-.++..|..+
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~--~~~~~~~~~~~-i---~v~n~~~L~~i~~~  688 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS--DKDQFATMQFT-I---EVKNLNHLGRVLAR  688 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc--cCCceEEEEEE-E---EECcHHHHHHHHHH
Confidence            3555555 3567789999999999999999999999999999999885  34444443322 1   12334677777776


Q ss_pred             HH
Q 014754          317 LK  318 (419)
Q Consensus       317 L~  318 (419)
                      |.
T Consensus       689 l~  690 (701)
T COG0317         689 LK  690 (701)
T ss_pred             Hh
Confidence            63

>PRK11898 prephenate dehydratase; Provisional

Probab=91.63  E-value=0.63  Score=45.39  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             eEEEee-CCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          343 PVELCG-KGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       343 ~~~v~g-~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      .+-+.- .++||-|+++-..|+++|||+.+++++-  ..+.. -.+.||+ |.+|.. .++ .-+++++.|++.
T Consensus       198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP--~~~~~-~~y~F~v-d~eg~~-~~~-~~~~al~~L~~~  265 (283)
T PRK11898        198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRP--TKTGL-GTYFFFI-DVEGHI-DDV-LVAEALKELEAL  265 (283)
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEeccc--CCCCC-ccEEEEE-EEEccC-CCH-HHHHHHHHHHHh
Confidence            333444 3579999999999999999999999985  33343 5699999 777753 323 345566666653

>TIGR00657 asp_kinases aspartate kinase

Probab=91.53  E-value=13  Score=38.54  Aligned_cols=107  Identities=20%  Similarity=0.235  Sum_probs=65.9

Q ss_pred             CCeeEEEEEEcCc--chHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc-C
Q 014754          247 PAHTLLQIHCVDH--KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML-H  323 (419)
Q Consensus       247 ~~~tvi~v~~~Dr--pGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~-~  323 (419)
                      .+...|+|.+.+-  +|++.++..+|.++|++|....-.+  .....  .|.++.+        ..++..+.|..... .
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~--se~sI--s~~I~~~--------~~~~a~~~L~~~~~~~  367 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS--SETSI--SFTVDKE--------DADQAKTLLKSELNLS  367 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC--CCceE--EEEEEHH--------HHHHHHHHHHHHHHhc
Confidence            4567788877553  7999999999999999997765321  11222  2555431        11222222222111 1


Q ss_pred             Cc-eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          324 PL-RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       324 ~~-~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      .. .+.+. +.       -..+.+.|.   ++||++.++...|++.|+||....
T Consensus       368 ~~~~I~~~-~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 ALSSVEVE-KG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CcceEEEc-CC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            11 12211 11       236777664   789999999999999999998876

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09084 aspartate kinase III; Validated

Probab=91.48  E-value=10  Score=39.41  Aligned_cols=107  Identities=19%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      ..+..+|+|.+.   +.+|++.++..+|.++|++|..-..+   . ...  .|.++.+..  . ......+...+.+.+.
T Consensus       303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss---e-~sI--s~~i~~~~~--~-~~~~~~~~~~l~~el~  373 (448)
T PRK09084        303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS---E-VSV--SLTLDTTGS--T-STGDTLLTQALLTELS  373 (448)
T ss_pred             eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc---C-cEE--EEEEechhh--h-hhhhHHHHHHHHHHHh
Confidence            346778899875   68999999999999999999876522   1 222  366653211  0 0111223333334444


Q ss_pred             CCceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceE
Q 014754          323 HPLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICV  369 (419)
Q Consensus       323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I  369 (419)
                      ....+.+...        -..+.+.|.   ++||+...+..+|.+.++.+
T Consensus       374 ~~~~i~~~~~--------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~  415 (448)
T PRK09084        374 QLCRVEVEEG--------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM  415 (448)
T ss_pred             cCCeEEEECC--------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence            3223333211        126788886   79999999999998754443

>PRK09034 aspartate kinase; Reviewed

Probab=91.24  E-value=7.9  Score=40.35  Aligned_cols=109  Identities=12%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             CcEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNC---PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~---~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +.+.|++.+   ++++|+.+++...|+++|+||.--  .+...  --.|.|...+-.......+.+.|+..++...    
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~~--sis~~v~~~~~~~a~~~~l~~el~~~~~~~~----  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGID--DLSIIIRERQLTPKKEDEILAEIKQELNPDE----  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCCc--EEEEEEeHHHhhHHHHHHHHHHHHHhhCCce----
Confidence            345666664   678999999999999999998864  22222  2456664332110011334344443331100    


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                            -....+...|.+++.   +.||+++++..+|+++|+||.-...
T Consensus       379 ------I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        379 ------LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             ------EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence                  012235778888764   7899999999999999999985543

>PRK09181 aspartate kinase; Validated

Probab=91.24  E-value=9.6  Score=39.99  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +.+.|+|-+.   +.+|+.+++...|+++|++|.  -+.+...  -..|.|... .  ...+++.+.|++.+....    
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~-~--~~~~~~~~~L~~~~~~~~----  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS-L--KTLKRVIAELEKRYPNAE----  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC-h--HHHHHHHHHHHHhcCCce----
Confidence            4566677543   789999999999999999997  2333222  245666433 1  134555566665552211    


Q ss_pred             cccCCCCCCCCCeEEEEEEecC--cccHHHHHHHHHHhCCceEEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCLD--RKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~D--rpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                          .  . ..+...|.++|..  +||+.+++..+|++.|+||..-..
T Consensus       397 ----i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        397 ----V--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             ----E--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence                0  1 1457789998865  899999999999999999984433

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=91.20  E-value=12  Score=39.00  Aligned_cols=109  Identities=16%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             CCCeeEEEEEEcC---cchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          246 SPAHTLLQIHCVD---HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       246 ~~~~tvi~v~~~D---rpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      ..+.+.|.|.+..   ++|.+.++...|.++|+++..-.-... . ..  =.|.++.        ...+.....|.+...
T Consensus       304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~-~-~~--i~~~v~~--------~~~~~a~~~l~~~~~  371 (447)
T COG0527         304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSIS-E-VS--ISFTVPE--------SDAPRALRALLEEKL  371 (447)
T ss_pred             CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccC-C-Ce--EEEEEch--------hhHHHHHHHHHHHHh
Confidence            3577888888765   569999999999999999976543320 1 11  2365532        112222233333332


Q ss_pred             CCc-eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEe
Q 014754          323 HPL-RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAI  374 (419)
Q Consensus       323 ~~~-~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~  374 (419)
                      ... .+.+...        -..+.+.|.   ..||+...+..+|++.++||....+
T Consensus       372 ~~~~~v~~~~~--------~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss  419 (447)
T COG0527         372 ELLAEVEVEEG--------LALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS  419 (447)
T ss_pred             hhcceEEeeCC--------eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence            221 2222111        126788885   7799999999999999999998883

>PRK08210 aspartate kinase I; Reviewed

Probab=91.19  E-value=8.7  Score=39.26  Aligned_cols=99  Identities=13%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             CcEEEEEEcCCC-CChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccc
Q 014754           19 EPHVITVNCPDK-TGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFN   97 (419)
Q Consensus        19 ~~~~v~V~~~Dr-pgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~   97 (419)
                      +...|+|.+.+. ||.+++|...|+++|.||.-...+.+ .   -+|.+...     +.++..+.|++.-  ..      
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~-----~~~~a~~~l~~~~--~~------  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE-----DSEKAKEILENLG--LK------  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH-----HHHHHHHHHHHhC--Cc------
Confidence            456777777555 99999999999999999987643322 1   24555321     2333434444421  00      


Q ss_pred             cCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 014754           98 QLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQR  138 (419)
Q Consensus        98 ~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~  138 (419)
                          .....+...|.|++.   ++||+++++..+|++.|+||..
T Consensus       333 ----v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 ----PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ----EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                012235677888875   7899999999999999999974

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.86  E-value=1.4  Score=32.87  Aligned_cols=59  Identities=19%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             EEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHH
Q 014754          253 QIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKM  319 (419)
Q Consensus       253 ~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~  319 (419)
                      .|.-+||||=|..+..++.. |.||..-.-..  .+.....+++. ...     ++++.++|.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~~~~v~v~ie~~-----~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGDEARVLVGIQVP-----DREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCCceEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            56779999999999999999 99998877664  23333444533 332     35677888887753

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=90.47  E-value=0.92  Score=46.60  Aligned_cols=68  Identities=9%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL  416 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l  416 (419)
                      +++-+.-.|+||-|+++-..|+++|||+.++++..  ..+.. -.+.||| |.+|.. .  ..-+.+++.|++..
T Consensus        17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRP--sk~~~-~eY~FFV-D~eg~~-~--~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRP--SKTHP-GEYEFFV-EFDEAS-D--RKLEGVIEHLRQKA   84 (436)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEeccc--CCCCC-ccEEEEE-EEecCc-c--HHHHHHHHHHHHhc
Confidence            35555668999999999999999999999999985  33333 4688999 767754 2  34577788887654

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=90.40  E-value=2  Score=43.85  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=41.4

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      ..|.+-+..+|+||.|+++...|+..|+|+.+-.-.- +.+.-..=+||++.+|..
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP-~~~~~~~Y~Ffid~eg~~  350 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP-IHGNPWEEMFYLDVQANL  350 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee-cCCCCceEEEEEEEeCCC
Confidence            3566666668999999999999999999998766553 234444456789988853

>PLN02317 arogenate dehydratase

Probab=89.85  E-value=1.4  Score=44.72  Aligned_cols=70  Identities=9%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccC-----------ceeeEEEEEEEcCCCCCCcchHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSE-----------REWEIYRFLLDENCKFQLSSMVAREQIVD  410 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~-----------~~~~~~~f~~~d~~g~~~~~~~~~~~~~~  410 (419)
                      +.+-+.-.|+||.|+++-.+|+.+|||+.+++++..-...           ...-.+.||+ |.+|..-+ +.. +..++
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~-~~aL~  360 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRA-QNALA  360 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHH-HHHHH
Confidence            4555555789999999999999999999999997522221           0013689999 87775433 333 44556


Q ss_pred             HHHH
Q 014754          411 RVRR  414 (419)
Q Consensus       411 ~~~~  414 (419)
                      .|+.
T Consensus       361 ~L~~  364 (382)
T PLN02317        361 HLQE  364 (382)
T ss_pred             HHHH
Confidence            6654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.69  E-value=0.72  Score=47.38  Aligned_cols=48  Identities=17%  Similarity=0.122  Sum_probs=41.1

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                      ....|.+.-.|+||.++.|+..|+++|+||...+..+ .++++.-+|-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence            5678888999999999999999999999999888874 56777666644

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.51  E-value=3.6  Score=32.20  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=35.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .+.|.-+|+||=|++++.+|+  +.||....-.....+.+.-.+.+...++    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence            477888999999999999999  5666643332222233322232322211    3445566666554

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=89.47  E-value=1.8  Score=47.16  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEE
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDL  152 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~  152 (419)
                      ....+.|.|.+.||+|+|++|+.+|+..++||.+....+. ++....+
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~  670 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATM  670 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEE
Confidence            3467899999999999999999999999999999888764 4444343

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.42  E-value=1.6  Score=38.67  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      ...+.+.-.|.||.|+++++.|++.|+||.+..+.-+..+. .--++.+. .     ++...+++...|.++.+
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~-g-----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS-G-----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc-C-----CcchHHHHHHHHHhhcc
Confidence            45688888999999999999999999999998886554433 33333332 1     23456778888887763

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=88.99  E-value=1.2  Score=46.06  Aligned_cols=67  Identities=6%  Similarity=0.024  Sum_probs=49.1

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      +++-+.-.|+||-|+++-..|+++|||+.++++..  ..+..|..+.||| |.+|..    ..-+++++.|+..
T Consensus        32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRP--sk~~~~e~Y~FfV-D~Eg~~----~~l~~aL~~Lk~~   98 (464)
T TIGR01270        32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRD--SKDGTSKTMDVLV-DVELFH----YGLQEAMDLLKSG   98 (464)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCc--CCCCCCccEEEEE-EEEcCH----HHHHHHHHHHHHh
Confidence            45666668999999999999999999999999986  3333323389999 666543    2346666777653

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PLN02551 aspartokinase

Probab=88.46  E-value=15  Score=39.05  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +.+.|+|.+.   +.+|.++++...|+++|++|.--  ++...  --.|.|...+-.  ..+.+++.++..+.... .. 
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~--sIs~~v~~~~~~--~~~~i~~~l~~l~~el~-~~-  436 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEV--SISLTLDPSKLW--SRELIQQELDHLVEELE-KI-  436 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCC--EEEEEEehhHhh--hhhhHHHHHHHHHHHhh-cC-
Confidence            3467777654   68999999999999999998754  23222  235666433211  12223323322211100 00 


Q ss_pred             cccCCCCCCCCCeEEEEEEec--CcccHHHHHHHHHHhCCceEEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL--DRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~--DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                          .......+...|.|+|.  ..+|+++++..+|+..|+||.....
T Consensus       437 ----~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq  480 (521)
T PLN02551        437 ----AVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ  480 (521)
T ss_pred             ----CeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence                00122345777888864  6889999999999999999985444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.13  E-value=1.5  Score=44.39  Aligned_cols=50  Identities=12%  Similarity=0.069  Sum_probs=37.1

Q ss_pred             ceeEEEeeC-CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCC
Q 014754          341 ANPVELCGK-GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCK  396 (419)
Q Consensus       341 ~~~~~v~g~-DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g  396 (419)
                      .+.+.+.=. |+||.|++|+..|+++||||.+.++.    .+++|. +.|++ +..+
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~-y~f~i-~~~~  345 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGE-LHFRI-GFEP  345 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCce-EEEEE-EEec
Confidence            445555555 99999999999999999999999993    233333 33888 5433

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=87.60  E-value=4.4  Score=41.05  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE---ee-cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT---TT-PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA  177 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~---T~-~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~  177 (419)
                      .....+.|.-+|+||.|++++..++++|.||.+..-.   .. ..+.+.-.+.+...     +++..+.|.+.|++
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            3466899999999999999999999999999976433   11 22444444444322     23444556555554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.85  E-value=1.7  Score=46.11  Aligned_cols=61  Identities=20%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+-+.-.|+||++..|+..|.+.+|||-.+.+.+...++.  +...+.+++    ++.     +.+++.|++
T Consensus       454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al~~i~~D~----~v~-----~~~l~~i~~  514 (526)
T PRK13581        454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--ALMVLSVDD----PVP-----EEVLEELRA  514 (526)
T ss_pred             EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EEEEEECCC----CCC-----HHHHHHHhc
Confidence            3444558999999999999999999999999887544444  777777733    455     566666653

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.64  E-value=20  Score=40.28  Aligned_cols=114  Identities=12%  Similarity=0.081  Sum_probs=71.0

Q ss_pred             CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccc
Q 014754           18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF   94 (419)
Q Consensus        18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~   94 (419)
                      .+...|+|.+.   ++||+.+++...|+++|.||.-...++...-  ..|.|...     +.+.....|.+.+.....  
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~s--Isf~V~~~-----d~~~av~~L~~~f~~el~--  383 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYS--ISFCVPQS-----DAAKAKRALEEEFALELK--  383 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCce--EEEEEeHH-----HHHHHHHHHHHHHHHHhc--
Confidence            35567888764   7899999999999999999965433333331  35666332     222222334333211100  


Q ss_pred             ccccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754           95 YFNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                       ...........+...|.|+|.   ++||+.+++..+|.+.|+||.....
T Consensus       384 -~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        384 -EGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             -cCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence             000000122346778999886   7899999999999999999985543

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.20  E-value=2.2  Score=40.29  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=34.0

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      ....|.+.-.|.||++++|+++|+..|.||.+.-+.-+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t  113 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT  113 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence            46679999999999999999999999999999888643

>PRK06382 threonine dehydratase; Provisional

Probab=86.13  E-value=3  Score=42.78  Aligned_cols=64  Identities=20%  Similarity=0.180  Sum_probs=46.1

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee----e--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS----T--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~----t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ..+.+.|.-+|+||-|++++..|.++|.||.+-...    .  .|.. ..+|.|...+-  ...+.|.+.|++
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~-~v~i~vet~~~--~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQ-SVTFTVNVRGQ--DHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcE-EEEEEEEeCCH--HHHHHHHHHHHH
Confidence            457889999999999999999999999999977654    2  4553 45666644311  134466666665

>PRK08198 threonine dehydratase; Provisional

Probab=85.76  E-value=7  Score=39.97  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT  142 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~  142 (419)
                      ......+.|.-+|+||-|+++...++++|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44567899999999999999999999999999977664

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=85.73  E-value=1.9  Score=45.79  Aligned_cols=61  Identities=18%  Similarity=0.328  Sum_probs=45.5

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+-+.-.||||++..|+..|.+++|||-.+...+...++.  +...+.+++    ++.     +.+++.|++
T Consensus       453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~--al~~i~~D~----~v~-----~~~l~~i~~  513 (525)
T TIGR01327       453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGE--ALMLLSLDQ----PVP-----DEVLEEIKA  513 (525)
T ss_pred             EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCe--EEEEEEcCC----CCC-----HHHHHHHhc
Confidence            3444457999999999999999999999999987545444  777777733    355     566666654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.35  E-value=3.9  Score=36.30  Aligned_cols=67  Identities=13%  Similarity=0.115  Sum_probs=48.7

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      -++.+.-.|.||.|..++..|+..|+||.+-.+.. |+-....-+-++ ..      |+...+++..+|...+.-
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv~g------~~~~~EQi~kQL~kLidV   72 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVVSG------DEQVLEQIIKQLNKLIDV   72 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEEcC------CcchHHHHHHHHHhhccc
Confidence            36777789999999999999999999999998885 443333333333 32      235678888888766654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.31  E-value=2  Score=44.15  Aligned_cols=62  Identities=21%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      +...+.+.-+|+||.+++++.+|+++|+||-.-+..+.|..++-++.+..   .  -.+.+.+.|++
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~---~--~~~~~~~~i~~  398 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA---D--YAEEALDALKA  398 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC---C--CcHHHHHHHHc
Confidence            66788999999999999999999999999988888876655556666632   1  13344455554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.42  E-value=2.6  Score=42.75  Aligned_cols=49  Identities=18%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             CeEEEEEEec-CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754          107 PVYLLKLFCL-DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD  157 (419)
Q Consensus       107 ~~~~i~v~~~-DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~  157 (419)
                      ..+.|.+.-+ |+||-|++++..|+.+|+||.+-.+.- ...+-.- |++.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~-f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELH-FRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEE-EEEEE
Confidence            4677777776 999999999999999999999888832 2222222 77753

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.98  E-value=4.3  Score=41.96  Aligned_cols=51  Identities=22%  Similarity=0.468  Sum_probs=40.2

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcC
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN  158 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~  158 (419)
                      ..+.|.+...|+||.|++|++.|.++|+||.+...... .+....++++++.
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~  397 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE  397 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe
Confidence            46789999999999999999999999999997766533 2344566677653

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=83.69  E-value=11  Score=27.63  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=25.1

Q ss_pred             EEEE-ecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754          111 LKLF-CLDRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus       111 i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                      |++. .+|.||.++++...|++.|+||.....
T Consensus         4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            3443 378999999999999999999985543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.57  E-value=4.7  Score=40.86  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee---e---cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIS---T---DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~---t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ..+.|.-+|+||.|++++..++++|.||.+-.-.   .   .|.+ ...+.+...+  +...+.|.+.|++
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~-~v~v~vet~~--~~~~~~i~~~L~~  373 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFA-MVEITLETRG--KEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceE-EEEEEEEeCC--HHHHHHHHHHHHH
Confidence            4889999999999999999999999999987543   1   3443 3344443221  1144566666655

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=83.44  E-value=9.2  Score=29.86  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EEecCCCcCCCHHHHHHHHHHHH
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLK  318 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v~~~g~~~~d~~~~~~l~~~L~  318 (419)
                      ++.|.-+||||=|..++.+|.  +.||....-... ..+ ...+. .+...++    ++..+.+.+.|.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~-~~~v~i~ie~~~~----~~~~~~i~~~L~   63 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEK-DAHIFVGVSVANG----AEELAELLEDLK   63 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCC-eeEEEEEEEeCCc----HHHHHHHHHHHH
Confidence            678888999999999999999  556654444421 122 22233 3443221    466777777764

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=83.24  E-value=3.2  Score=41.79  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=35.4

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754           18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST   55 (419)
Q Consensus        18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t   55 (419)
                      .....|.|.-||+||-+++|+..|...|+||.+-+|..
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            46789999999999999999999999999999999964

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=83.14  E-value=2.2  Score=45.39  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=45.1

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHH
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAIC  314 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~  314 (419)
                      .....+-+.-.||||.+..++..|.++++||...++.+...|+.+.  .++..+. +++ ++.+++|+
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al--~~i~~D~-~v~-~~~l~~i~  512 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEAL--MLLSLDQ-PVP-DEVLEEIK  512 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEE--EEEEcCC-CCC-HHHHHHHh
Confidence            3445556677999999999999999999999999988754566555  3444433 444 34555554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=83.11  E-value=1.8  Score=43.63  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=36.3

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754          105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus       105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      .+.++.+.|.-+|+||-+++++..|...|+||.+.+|.-.
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~  326 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEA  326 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeec
Confidence            4568899999999999999999999999999999999643

>PRK09224 threonine dehydratase; Reviewed

Probab=83.10  E-value=67  Score=34.00  Aligned_cols=145  Identities=12%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHH-HHHHHHHHHHHhcCC
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEK-QSAICSRLKMEMLHP  324 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~-~~~l~~~L~~~l~~~  324 (419)
                      .....+.|.-+||||=|..+.+.|.  +.||..-+-..  .+.....+|+. ...+     +++ .+.|.+.|.+   .+
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~--~~~~~a~V~vgie~~~-----~~~~~~~i~~~L~~---~g  393 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRY--ADAKEAHIFVGVQLSR-----GQEERAEIIAQLRA---HG  393 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEe--cCCCeEEEEEEEEeCC-----hhhHHHHHHHHHHH---cC
Confidence            4567899999999999999999999  57776655543  23334445643 4322     233 6778777643   23


Q ss_pred             ceEEEecCCC------------Cc-ccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEE
Q 014754          325 LRVIIANRGP------------DT-ELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLL  391 (419)
Q Consensus       325 ~~v~i~~~~~------------~~-~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~  391 (419)
                      ..+...+...            .+ ...-...+.+.=++|||-|.+....|. -+.||...+-.   .+++  ....-.+
T Consensus       394 y~~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr---~~~~--~~g~vlv  467 (504)
T PRK09224        394 YPVVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR---NHGA--DYGRVLA  467 (504)
T ss_pred             CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc---cCCc--ccccEEE
Confidence            4433332110            00 000122456677899999999988766 66788888875   3343  2333333


Q ss_pred             EcCCCCCCcchHHHHHHHHHHHH
Q 014754          392 DENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       392 ~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                          |-.+.+. ++..+.+++..
T Consensus       468 ----gi~~~~~-~~~~~~~~l~~  485 (504)
T PRK09224        468 ----GFQVPDA-DEPEFEAFLDE  485 (504)
T ss_pred             ----EEecChh-hHHHHHHHHHH
Confidence                3334322 55666666543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.47  E-value=3  Score=44.30  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=44.6

Q ss_pred             CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHH
Q 014754          246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAIC  314 (419)
Q Consensus       246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~  314 (419)
                      .+....+-+...|+||.+..++..|.++++||...++.+...|+.+.  .++..++ +++ ++.+++|+
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al--~~i~~D~-~v~-~~~l~~i~  513 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEAL--MVLSVDD-PVP-EEVLEELR  513 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEE--EEEECCC-CCC-HHHHHHHh
Confidence            34455556677999999999999999999999999988643345444  3444433 444 34545554

>PRK08198 threonine dehydratase; Provisional

Probab=82.23  E-value=7.7  Score=39.64  Aligned_cols=67  Identities=19%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeecc-CceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTS-EREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~-~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      ..+.+.=.||||.|.++...+.+.|.||.+..-...... ....+.-.+-+ +     +.++...+.+++.|+.
T Consensus       328 ~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e-----~~~~~~~~~l~~~L~~  395 (404)
T PRK08198        328 LKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-E-----TRGPEHIEEILDALRD  395 (404)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-E-----eCCHHHHHHHHHHHHH
Confidence            378888899999999999999999999999876542111 11102222222 2     1234566788888876

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=82.09  E-value=24  Score=39.65  Aligned_cols=106  Identities=14%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|++.+.   +.||.+.++..+|.++|+++..-..++  .....  .|.++.        ...+.+.+.|... ..
T Consensus       315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~--s~~si--s~~i~~--------~~~~~~~~~l~~~-~~  381 (810)
T PRK09466        315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP--DRQLL--QLAYTS--------EVADSALKLLDDA-AL  381 (810)
T ss_pred             CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC--CCcEE--EEEEeH--------HHHHHHHHHHHhh-cC
Confidence            45678888876   789999999999999999997665432  22211  244432        1233333333322 12


Q ss_pred             CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ...+.+...        -..+.++|.   .+||+...+..+|.+.++++....
T Consensus       382 ~~~i~v~~~--------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~  426 (810)
T PRK09466        382 PGELKLREG--------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS  426 (810)
T ss_pred             CCcEEEeCC--------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence            222322111        236888885   689999999999999999986554

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=81.83  E-value=42  Score=38.03  Aligned_cols=105  Identities=13%  Similarity=0.152  Sum_probs=65.4

Q ss_pred             CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754          246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML  322 (419)
Q Consensus       246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~  322 (419)
                      ..+.++|++.+.   +.+|++.+|...|.++|++|..-  ++  ....+  .|.++....... .+.++.+...|.    
T Consensus       319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~s--se~si--s~~i~~~~~~~~-~~~~~~l~~~l~----  387 (861)
T PRK08961        319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SS--SETNV--TVSLDPSENLVN-TDVLAALSADLS----  387 (861)
T ss_pred             ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--Ec--CCCEE--EEEEccccccch-HHHHHHHHHHHh----
Confidence            345788888754   58999999999999999999765  32  12222  255543221111 123444444432    


Q ss_pred             CCceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceE
Q 014754          323 HPLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICV  369 (419)
Q Consensus       323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I  369 (419)
                      ..-.+.+...        -..|.++|.   .+||+...+..+|++.+|++
T Consensus       388 ~~~~i~~~~~--------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        388 QICRVKIIVP--------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             hcCcEEEeCC--------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence            2112222111        137888885   88999999999999988765

>TIGR00657 asp_kinases aspartate kinase

Probab=81.57  E-value=18  Score=37.50  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=65.2

Q ss_pred             CcEEEEEEcCC-C-CChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccc
Q 014754           19 EPHVITVNCPD-K-TGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYF   96 (419)
Q Consensus        19 ~~~~v~V~~~D-r-pgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~   96 (419)
                      +...|+|.+.+ . +|+++++...|.++|+||.-..-.+...  --.|.|...+     .+...+.|........     
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~--sIs~~I~~~~-----~~~a~~~L~~~~~~~~-----  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSET--SISFTVDKED-----ADQAKTLLKSELNLSA-----  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCc--eEEEEEEHHH-----HHHHHHHHHHHHHhcC-----
Confidence            45567777633 3 7999999999999999997553222222  1355553322     1222222322110000     


Q ss_pred             ccCCCCCCCCCeEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 014754           97 NQLSTRPTCSPVYLLKLFC---LDRKGLLHDVTQVLCELELSIQRVK  140 (419)
Q Consensus        97 ~~~~~~~~~~~~~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~  140 (419)
                        ...-....+...|++++   .+.||+++++...|++.|+||....
T Consensus       369 --~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 --LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             --cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence              00001233577888876   4789999999999999999998543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=81.29  E-value=13  Score=28.38  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=25.7

Q ss_pred             EEEEE--E-ecCcccHHHHHHHHHHhCCceEEEE
Q 014754          109 YLLKL--F-CLDRKGLLHDVTQVLCELELSIQRV  139 (419)
Q Consensus       109 ~~i~v--~-~~DrpGLl~~i~~~l~~~glnI~~a  139 (419)
                      +.|+|  . .++.||++++|..+|+++|+||.-.
T Consensus         2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI   35 (75)
T cd04932           2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI   35 (75)
T ss_pred             EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence            35666  2 4788999999999999999999844

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=80.50  E-value=46  Score=35.94  Aligned_cols=114  Identities=14%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcE-EEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc----c
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIW-CYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV----S   93 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~-~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~----~   93 (419)
                      ..+.|.-|||||-|.+++.+|...  ||.+-.-..  .+.. +...+.+.++    ...++|.+.|++.--....    .
T Consensus       418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~----~~~~~i~~~l~~~g~~~~~l~~~~  491 (591)
T PLN02550        418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTE----QELQALKKRMESAQLRTVNLTSND  491 (591)
T ss_pred             EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCH----HHHHHHHHHHHHCCCCeEeCCCCh
Confidence            578899999999999999999986  888766442  2221 1222333221    1456666666653211000    0


Q ss_pred             --cccccC-C-CCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754           94 --FYFNQL-S-TRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        94 --~~~~~~-~-~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                        +.+-+. . ....-..--.+.+.-|.|||-|.+++.+|.. ..||...+=
T Consensus       492 ~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~Y  542 (591)
T PLN02550        492 LVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHY  542 (591)
T ss_pred             HHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEe
Confidence              111000 0 0011133556777889999999999998874 356665444

>PRK12483 threonine dehydratase; Reviewed

Probab=80.36  E-value=86  Score=33.40  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcE-EEEEEEEecCCCCcccH-HHHHHHHHhhCCCC---C
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIW-CYIVLWVVPHSSSIIRW-TNLKNRLMLECPSC---S   91 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~-~~d~f~V~~~~g~~~~~-~~l~~~Le~~L~~~---~   91 (419)
                      ....+.|.-|||||-|.+++.+|...  ||.+-.-..  .+.. +...+.+.+++    .. +.|.+.|++.--..   .
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~----~~~~~i~~~l~~~g~~~~dls  417 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRH----DPRAQLLASLRAQGFPVLDLT  417 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChh----hhHHHHHHHHHHCCCCeEECC
Confidence            34678889999999999999999988  888765432  2221 11223332222    33 56667776531000   0


Q ss_pred             c-ccc----ccc-CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754           92 V-SFY----FNQ-LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        92 ~-~~~----~~~-~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                      + ...    |.. .-..+....--.+.+.-|.|||=|.+++..|.. ..||...+=
T Consensus       418 dne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~Y  472 (521)
T PRK12483        418 DDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHY  472 (521)
T ss_pred             CCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-Ccceeeeee
Confidence            0 010    100 000112234556777789999999999999984 245554443

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=80.36  E-value=7.6  Score=33.20  Aligned_cols=66  Identities=14%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      ...+.+.=.||.|+|+++-+++++.++||...+=.- .-+|+  |--+..+ |.++..    .+.+.+++.+|+
T Consensus        72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~--Anvtlsi-~~ssm~----~~V~~ii~kl~k  137 (150)
T COG4492          72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGR--ANVTLSI-DTSSME----KDVDKIIEKLRK  137 (150)
T ss_pred             EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCce--eeEEEEE-Echhhh----hhHHHHHHHHhc
Confidence            357888889999999999999999999998776432 24455  6666666 444433    336778887775

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=80.08  E-value=3.3  Score=36.50  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=27.8

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEe
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDI   53 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i   53 (419)
                      +.+++..-.++.||+++.+++.++++|++|..+-.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            33444444588999999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2nyi_A	195	Unknown protein; protein structure initiative, PSI	5e-06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-04

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 22  VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
           VIT    D+ G+  ++ R++   G  I    I+  G    +++ +    S+I R      
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 82  RLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV 141
            L  +                 T +    + +   D+ GL    TQ   + ++ +  +  
Sbjct: 68  LL-GQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA 126

Query: 142 TTTPDGRVL---DLFFIT 156
            T    ++    + F I 
Sbjct: 127 QTISKDKLHSEQNQFHIA 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 67/473 (14%), Positives = 135/473 (28%), Gaps = 147/473 (31%)

Query: 30  KTGLGCDICR-----IILDFGLY-ITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRL 83
           KT +  D+C        +DF ++ +   + ++               + +     L  ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------------ETVLEMLQKLLYQI 209

Query: 84  MLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDR--KGL--LHDV--TQVL------CE 131
             +    S S + + +  R       L +L         L  L +V   +        C 
Sbjct: 210 --DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC- 266

Query: 132 LELSIQRVKVTTTPDGRVLDL--------FFITDNRELLHTKKRQDETCEQLHAVLGESC 183
                 ++ +TT    +V D           +  +   L      DE    L   L   C
Sbjct: 267 ------KILLTTR-FKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLD--C 313

Query: 184 ISCELQLAGPE--CDCHQGVTSLSPVVAEEL---------FRFELSDKETR-----LQAL 227
              +L    P      +    S+   +AE +         ++    DK T      L  L
Sbjct: 314 RPQDL----PREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 228 SPDMTK--LKKANVVVDNSLSPAHTLLQIHCVDHKGLL------YDIMRTLKDCNMKISY 279
            P   +    + +V   ++  P   L          L+       D+M  +   +     
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILL---------SLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 280 GRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIAN----RGPD 335
            +  P         ++++ K                      LH  R I+ +    +  D
Sbjct: 418 EK-QPKESTISIPSIYLELK--------------VKLENEYALH--RSIVDHYNIPKTFD 460

Query: 336 TELLVANPVE----------LCGKGR-------PRVFYDVT-LALKVLGICVFSAAIGRY 377
           ++ L+   ++          L              VF D   L  K+        A G  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 378 STSEREWEIYRFLLDENC-----------KF--QLSSMVAREQIVDRVRRALM 417
             + ++ + Y+  + +N             F  ++   +   +  D +R ALM
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 10/178 (5%)

Query: 22  VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKN 81
           V++V   D+ G+  D    + +    +    ++  G    +++ V  ++        +++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL---IQS 63

Query: 82  RLMLECPSCSVSF---YFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQR 138
            L    P   +S               +  Y L +   D +G++  VT VL +   +I  
Sbjct: 64  ALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVE 123

Query: 139 VKVTTTPDGRV-LDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQ-LAGPE 194
           ++  T P       LF +     +        E    L  V  E  +  +L+ +   E
Sbjct: 124 LETETLPAPFAGFTLFRMGS--RVAFPFPLYQEVVTALSRVEEEFGVDIDLEEVVEGE 179

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHT 164
           +++   D+ G+ + +T V+ + + +I+ + +    DG    +L     N + L T
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK-DGIFTCNLMIFVKNTDKLTT 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.64
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.0
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.79
2f06_A	144	Conserved hypothetical protein; structural genomic	98.39
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.21
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.18
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.13
2f06_A	144	Conserved hypothetical protein; structural genomic	97.94
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.88
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.65
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.65
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.58
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.58
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.55
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.54
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.54
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.53
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.51
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.5
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.43
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.39
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.34
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.31
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.3
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.1
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.09
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.07
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.8
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.67
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.61
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.59
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.5
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.4
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.2
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.99
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.98
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.76
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.73
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.67
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.55
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.43
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.43
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.83
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.47
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.46
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.18
3luy_A	329	Probable chorismate mutase; structural genomics, A	94.08
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.96
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.41
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	92.43
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.79
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.12
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	90.82
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	90.78
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.65
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.43
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	89.74
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.28
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	88.02
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	87.27
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	86.86
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	86.4
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	85.71
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.43
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	83.07

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=6.6e-18  Score=154.18  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCC-cccHHHHHHHHHhhCCCC-Cc-cc
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSS-IIRWTNLKNRLMLECPSC-SV-SF   94 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~-~~~~~~l~~~Le~~L~~~-~~-~~   94 (419)
                      ..++|+|+||||||||++|+++|+++|+||++|++++ .|.++| .|.|..+... ..+++.|++.|...+... .. ..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~   82 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAKDGKLIQSALESALPGFQISTRRASSV   82 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence            4579999999999999999999999999999999986 666655 7777654321 012455544444332110 00 01


Q ss_pred             ccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHH
Q 014754           95 YFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCE  173 (419)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~  173 (419)
                      .+ .. . ......++|+|.|+|||||+++|+++|+++|+||.+++++|... ++..+.|++....+.. ++.. +.|++
T Consensus        83 ~~-~~-~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~  157 (195)
T 2nyi_A           83 AE-RH-V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVT  157 (195)
T ss_dssp             ------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHH
T ss_pred             Ee-CC-c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHH
Confidence            11 10 1 23346789999999999999999999999999999999997530 2345788887654322 2345 78888


Q ss_pred             HHHHHHc
Q 014754          174 QLHAVLG  180 (419)
Q Consensus       174 ~L~~~l~  180 (419)
                      .|..+..
T Consensus       158 ~l~~~a~  164 (195)
T 2nyi_A          158 ALSRVEE  164 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887653

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=3e-17  Score=149.83  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC  186 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~  186 (419)
                      ..++|+|+|+|||||++.|+++|+++|+||.++++++..++.++ .|.|..+..  ..+.+++.|++.|..++.+..   
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~---   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTR---   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEE---
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcC---
Confidence            46899999999999999999999999999999999986555554 788865421  123345666666654432210   


Q ss_pred             ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754          187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI  266 (419)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i  266 (419)
                         +   ..       .+                        +   .  .+    . ..+...++|+|.|+|||||+++|
T Consensus        78 ---~---~~-------~~------------------------~---~--~~----~-~~~~~~~iltv~g~DrpGiva~V  110 (195)
T 2nyi_A           78 ---R---AS-------SV------------------------A---E--RH----V-SPDTREYELYVEGPDSEGIVEAV  110 (195)
T ss_dssp             ---E---CC-------CC-------------------------------------C-CTTEEEEEEEEEEECCTTHHHHH
T ss_pred             ---C---eE-------EE------------------------E---e--CC----c-CCCCcEEEEEEEeCCCcCHHHHH
Confidence               0   00       00                        0   0  01    1 34457799999999999999999


Q ss_pred             HHHHHhCCeEEEEEEEeecCCC--CeeEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHhcC-CceEEEec
Q 014754          267 MRTLKDCNMKISYGRFSPNSQG--YRDLDLFIQQ-KDGKKIVDPEKQSAICSRLKMEMLH-PLRVIIAN  331 (419)
Q Consensus       267 ~~~l~~~g~~I~~a~i~t~t~g--~~~~D~F~v~-~~g~~~~d~~~~~~l~~~L~~~l~~-~~~v~i~~  331 (419)
                      +++|+++|+||.+++..+  .+  ++..+.|++. .-+.+  ++.. +.|++.|.....+ .+.+.+.+
T Consensus       111 t~~La~~g~nI~~~~~~t--~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~l~~di~~~~  174 (195)
T 2nyi_A          111 TAVLAKKGANIVELETET--LPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEEFGVDIDLEE  174 (195)
T ss_dssp             HHHHHHTTCEEEEEEEEE--EECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHcCCCEEEceeee--cccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHHcCeEEEEEE
Confidence            999999999999999995  45  5677889772 22222  2334 7888887655443 35555543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.71  E-value=8.7e-17  Score=146.24  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=111.8

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCC-Cc-cccc
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSC-SV-SFYF   96 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~-~~-~~~~   96 (419)
                      .+.|+|+|+||||+|++++++|+++|+||+++++++ .|.++ ..|.|..+.   ..++.|++.|+..+... .. ...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~   81 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGSP---SNITRVETTLPLLGQQHDLITMMKR   81 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEECH---HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceE-EEEEEecCC---CCHHHHHHHHHHHHHhcCCEEEEEe
Confidence            478999999999999999999999999999999986 66654 477776543   26778888887655211 11 1111


Q ss_pred             ccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC---CeEEEEEEEEcCCCCCCCHHHHHHHHH
Q 014754           97 NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD---GRVLDLFFITDNRELLHTKKRQDETCE  173 (419)
Q Consensus        97 ~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~---~~~~d~F~V~~~~g~~~~~~~~~~l~~  173 (419)
                      ........+...++|+|.++||||++++|+++|+++|+||.+++.+|...   .+..+.|++....+. +++...+.|++
T Consensus        82 ~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~-~~~~~~~~l~~  160 (192)
T 1u8s_A           82 TSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV-DSGCNLMQLQE  160 (192)
T ss_dssp             ECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE-CTTSCHHHHHH
T ss_pred             CCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC-CCCCCHHHHHH
Confidence            11111233446889999999999999999999999999999999997531   246688888765432 12335678888


Q ss_pred             HHHHHHc
Q 014754          174 QLHAVLG  180 (419)
Q Consensus       174 ~L~~~l~  180 (419)
                      .|..+..
T Consensus       161 ~l~~~~~  167 (192)
T 1u8s_A          161 EFDALCT  167 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887653

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.64  E-value=6.5e-15  Score=133.80  Aligned_cols=166  Identities=9%  Similarity=0.067  Sum_probs=113.8

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC  186 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~  186 (419)
                      ..++|+|+|+||||++++|+++|+++|+||.++++++. .+...-.|.|..+      ...++.|++.|..++....   
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~-~~~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~~---   74 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF-GKEFTLLMLISGS------PSNITRVETTLPLLGQQHD---   74 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEEC------HHHHHHHHHHHHHHHHHHT---
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec-CCceEEEEEEecC------CCCHHHHHHHHHHHHHhcC---
Confidence            36789999999999999999999999999999999985 4566568888643      2467788888887663210   


Q ss_pred             ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754          187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI  266 (419)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i  266 (419)
                         +   ..       .+.                    ..++      ++     +..+...++|+|.|+||||++++|
T Consensus        75 ---~---~~-------~~~--------------------~~~~------~~-----~~~~~~~~~l~v~~~D~~Gil~~v  110 (192)
T 1u8s_A           75 ---L---IT-------MMK--------------------RTSP------HD-----HQTHAYTVEVYVESDDKLGLTEKF  110 (192)
T ss_dssp             ---C---EE-------EEE--------------------EECC------CC-----CCCCSEEEEEEEEESCCTTHHHHH
T ss_pred             ---C---EE-------EEE--------------------eCCC------CC-----CccCCceEEEEEEeCCCccHHHHH
Confidence               0   00       000                    0000      11     244557899999999999999999


Q ss_pred             HHHHHhCCeEEEEEEEeecCCC----CeeEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHhcC-CceEEEe
Q 014754          267 MRTLKDCNMKISYGRFSPNSQG----YRDLDLFIQQ-KDGKKIVDPEKQSAICSRLKMEMLH-PLRVIIA  330 (419)
Q Consensus       267 ~~~l~~~g~~I~~a~i~t~t~g----~~~~D~F~v~-~~g~~~~d~~~~~~l~~~L~~~l~~-~~~v~i~  330 (419)
                      +++|+++|+||.+++..+  .+    .+..+.|++. .-+.+  ++...+.|++.|.+...+ .+.+.+.
T Consensus       111 ~~~l~~~~~nI~~~~~~t--~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~  176 (192)
T 1u8s_A          111 TQFFAQRQIGMASLSAQT--ISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTALDVQGSLN  176 (192)
T ss_dssp             HHHHHHTTCCEEEEEEEE--EC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHcCCcHHHhhhhc--ccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHhCceEEEE
Confidence            999999999999999985  45    2567888662 21111  122467788887654443 3444443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.00  E-value=7.4e-09  Score=104.52  Aligned_cols=153  Identities=9%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCC-Cc-ccc
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSC-SV-SFY   95 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~-~~-~~~   95 (419)
                      ..+.|+|.|||||||++.++++|+++|+||++++-+. .|.+ .-...+.-+.. ....+.|++.|+...... .. .+.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f-~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL-TLGVLVCCPAD-VADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE-EEEEEEEECHH-HHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe-EEEEEEEecCC-cCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            4578999999999999999999999999999999886 5554 34444432221 113466777776542111 11 111


Q ss_pred             cccCCCCCCCCCeEEEEEEecC-cccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 014754           96 FNQLSTRPTCSPVYLLKLFCLD-RKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQ  174 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~D-rpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~  174 (419)
                      +...........++.+++++.| ++|++.+++.+|+.+|+||...+..+. .....--|++..+.      ...+.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~-~~~~~~~~~v~~~~------~~~~~l~~~  161 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD-YPVIGLELRVSVPP------GADEALRTA  161 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES-SSSEEEEEEEECCT------TCHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC-CCceEEEEEeeCCC------CCHHHHHHH
Confidence            1111111234568899999999 999999999999999999998888753 22222235564321      224556666


Q ss_pred             HHHHHc
Q 014754          175 LHAVLG  180 (419)
Q Consensus       175 L~~~l~  180 (419)
                      |.+.+.
T Consensus       162 l~~l~~  167 (415)
T 3p96_A          162 LNRVSS  167 (415)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            666543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.79  E-value=2.2e-07  Score=93.59  Aligned_cols=137  Identities=11%  Similarity=0.018  Sum_probs=92.3

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc-CCc
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML-HPL  325 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~-~~~  325 (419)
                      ...++|+|.|+|||||++.|+..|+++|+||.++.-..  .++++.-...++.....    ...+.|++.|...-. -.+
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~   83 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADV----ADGPALRHDVEAAIRKVGL   83 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHH----HTSHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCc----CCHHHHHHHHHHHHHHcCe
Confidence            35689999999999999999999999999999999875  34433211112221110    123677777754322 234


Q ss_pred             eEEEecCCCC--cccccceeEEEeeCC-CCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754          326 RVIIANRGPD--TELLVANPVELCGKG-RPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE  393 (419)
Q Consensus       326 ~v~i~~~~~~--~~~~~~~~~~v~g~D-RpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d  393 (419)
                      .+.+......  ......+.+.+.|.+ +||++.+|+.+|+++|+||..+...+  .+..  ....|++.-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~--~~~~--~~~~~~v~~  150 (415)
T 3p96_A           84 DVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS--DYPV--IGLELRVSV  150 (415)
T ss_dssp             EEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE--SSSS--EEEEEEEEC
T ss_pred             EEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc--CCCc--eEEEEEeeC
Confidence            5555442221  112335689999999 99999999999999999999888765  2333  445566643

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.39  E-value=1.5e-05  Score=68.12  Aligned_cols=112  Identities=11%  Similarity=0.057  Sum_probs=77.3

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccccCC
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLS  100 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~~~  100 (419)
                      ..++|..+|+||.++++++.|+++|+||..-.........+-.|.+   +    +.+..++.|++.  +..         
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~---~----d~~~a~~~L~~~--G~~---------   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV---S----DPDKAYKALKDN--HFA---------   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE---S----CHHHHHHHHHHT--TCC---------
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe---C----CHHHHHHHHHHc--CCe---------
Confidence            5788999999999999999999999999987655321111123443   1    345555666653  211         


Q ss_pred             CCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          101 TRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       101 ~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                          .....++.+..+|+||.+++++++|++.|+||.....+. .++...-+|-+
T Consensus        69 ----v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~  118 (144)
T 2f06_A           69 ----VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP  118 (144)
T ss_dssp             ----EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred             ----EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence                011246777889999999999999999999998766652 35555555533

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.21  E-value=1.1e-05  Score=63.20  Aligned_cols=66  Identities=23%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      ....|+|.++||||++++++++|+++|+||.+....+ +|. +.-.+.+.-++..  ..+.+.+.|++..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~-~~~~i~v~~~~~~--~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEY-FTMMAVVSSDEKQ--DFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTE-EEEEEEEEESSCC--CHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCE-EEEEEEEEeCCCC--CHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999886 555 4556666444322  5777878887653

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.18  E-value=0.00053  Score=72.22  Aligned_cols=277  Identities=16%  Similarity=0.162  Sum_probs=157.5

Q ss_pred             CcEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEe--eecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNC-PDKTGLGCDICRIILDFGLYITKGDI--STDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~i--~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +.+.|++.. ++.||..++|...|+++|+||---.-  +.+|.. -..|.|...+-  ....++.+.+...+.....   
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~-~Isftv~~~~~--~~a~~~l~~~~~el~~~~~---  342 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSN-DIAFTVVKDLL--NTAEAVTSAIAPALRSYPE---  342 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEE-EEEEEECGGGH--HHHHHHHHHHGGGGSSSTT---
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCc-eEEEEEeHHHH--HHHHHHHHHHHHHhhcccc---
Confidence            345555554 89999999999999999999843221  124543 34666633221  1222222333333311000   


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHH
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETC  172 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~  172 (419)
                      ...........+...|.|++.   .+||+.+++..+|++.|+||....  |+  +. --.|.|..        +..++.-
T Consensus       343 ~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~-~Is~vI~~--------~d~~~Av  409 (600)
T 3l76_A          343 ADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EV-KVSCVIDQ--------RDADRAI  409 (600)
T ss_dssp             CSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SS-EEEEEEEG--------GGHHHHH
T ss_pred             ccCcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CC-EEEEEEcH--------HHHHHHH
Confidence            000000012346888999986   689999999999999999998443  43  22 23344432        2334555


Q ss_pred             HHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEE
Q 014754          173 EQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLL  252 (419)
Q Consensus       173 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi  252 (419)
                      +.|.+.+.....        +.         .++.        .           +  .....-+-|..+.    +.+.|
T Consensus       410 ~aLh~~f~~~~t--------~~---------~~~~--------~-----------~--~~~~~v~Gia~~~----~~a~i  447 (600)
T 3l76_A          410 AALSNAFGVTLS--------PP---------KNQT--------D-----------T--SHLPAVRGVALDQ----DQAQI  447 (600)
T ss_dssp             HHHHHHTTCCBC--------CC---------CCCC--------C----------------CCSCCEEEEEC----SEEEE
T ss_pred             HHHHHhhcccCC--------Cc---------cccc--------c-----------c--cccCceEEEEeeC----CEEEE
Confidence            566666643210        00         0000        0           0  0001124555543    45667


Q ss_pred             EEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCC---CCeeEE-EEEEecCCCcCCCHHHHHHHHHHHHHHhcCC---
Q 014754          253 QIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ---GYRDLD-LFIQQKDGKKIVDPEKQSAICSRLKMEMLHP---  324 (419)
Q Consensus       253 ~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~---g~~~~D-~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~---  324 (419)
                      ++.. +|+||+.++|...|++.|+||.--.-+....   |....| .|.+..        +.+++..+.|.+ +...   
T Consensus       448 ~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--------~d~~~a~~~l~~-~~~~~~~  518 (600)
T 3l76_A          448 AIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--------GDSSQAEAILQP-LIKDWLD  518 (600)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--------HHHHHHHHHHHH-HTTTSTT
T ss_pred             EEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--------HHHHHHHHHHHH-HHHhcCC
Confidence            6654 8999999999999999999995333221011   321223 466632        233444444433 2221   


Q ss_pred             ceEEEecCCCCcccccceeEEEee---CCCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 LRVIIANRGPDTELLVANPVELCG---KGRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~~v~i~~~~~~~~~~~~~~~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ..+.+...        -..+.++|   ..+||+-..+.++|++.||||....
T Consensus       519 ~~v~~~~~--------~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          519 AAIVVNKA--------IAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CEEEEECC--------EEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             ceEEEeCC--------eEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            12332211        23889998   4899999999999999999998877

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.13  E-value=2.2e-05  Score=61.43  Aligned_cols=67  Identities=16%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..+.|+|.++||||++++|+++|+++|+||.+....+. ++.+.-.+.+.-++     ...++.|.+.|.++-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~-~~~~~~~i~v~~~~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDE-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESS-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE-cCEEEEEEEEEeCC-----CCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999865 46666666664322     224667888887754

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.94  E-value=0.00041  Score=59.06  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEE
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVII  329 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i  329 (419)
                      ..++|.-+|+||.|++++..|++.|+||..-.+.. +. +.  .++-+..     .++   +..++.|.. .  +..+..
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~-~~-~~--~~~~~~~-----~d~---~~a~~~L~~-~--G~~v~~   71 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE-NA-DF--GILRGIV-----SDP---DKAYKALKD-N--HFAVNI   71 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE-CS-SC--EEEEEEE-----SCH---HHHHHHHHH-T--TCCEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe-cC-CC--CEEEEEe-----CCH---HHHHHHHHH-c--CCeEee
Confidence            46788889999999999999999999999877753 12 21  1121111     233   333333432 1  111110


Q ss_pred             ecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEee
Q 014754          330 ANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                                 ...+-+.-.|+||.+++++++|++.|+||..+-+.
T Consensus        72 -----------~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           72 -----------TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             -----------EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             -----------eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence                       11344556799999999999999999999877654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.88  E-value=6.6e-05  Score=58.06  Aligned_cols=64  Identities=14%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH  176 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~  176 (419)
                      ..+.|.|.++||||+|++|+++|++.|+||.+..+.+. ++.+...|.+...     +...++++.+.|.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~-~~~~~~~i~v~~~-----~~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK-DGIFTCNLMIFVK-----NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC-SSEEEEEEEEEES-----SHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc-CCEEEEEEEEEEC-----CHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999764 4455555555432     2344444444443

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.65  E-value=0.0002  Score=68.53  Aligned_cols=116  Identities=13%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccc
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYF   96 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~   96 (419)
                      ...++|.|+|||||++++++.|+++|+||.+++.++   .|.++ -...+.-+++ ....+.|++.|+.......  +..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~-~~~~~~L~~~f~~la~~~~--m~~   81 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFF-MRVVFNAAAK-VIPLASLRTGFGVIAAKFT--MGW   81 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEESSC-CCCHHHHHHHHHHHHHHTT--CEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceE-EEEEEEcCCC-CCCHHHHHHHHHHHHHHcC--CEE
Confidence            468999999999999999999999999999999874   66654 3344433332 2367888888876432111  100


Q ss_pred             ccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754           97 NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT  143 (419)
Q Consensus        97 ~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T  143 (419)
                      ...   . ......|-|..--+---|..+......-.+++.-+-+.+
T Consensus        82 ~l~---~-~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           82 HMR---D-RETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEE---E-TTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             Eee---c-cCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            000   0 011233444444444457777777766666655445554

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.65  E-value=0.00018  Score=69.17  Aligned_cols=67  Identities=10%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      .....++|.|||||||++++++.|+++|+||++++.+.   .|.+| -...+..+.+ ....+.|++.|+..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff-Mr~~~~~~~~-~~~~~~L~~~l~~l   89 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF-MRHEIRADTL-PFDLDGFREAFTPI   89 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE-EEEEEEGGGS-SSCHHHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE-EEEEEecCCC-CCCHHHHHHHHHHH
Confidence            34578999999999999999999999999999999886   46654 3444433321 13677888777654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.58  E-value=0.0011  Score=58.14  Aligned_cols=109  Identities=14%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             CCeeEEEEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754          247 PAHTLLQIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL  325 (419)
Q Consensus       247 ~~~tvi~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~  325 (419)
                      .+.+.|+|.+ .|+||.++++..+|+++|+||..-..+. +.++...=.|+++.        +..++..+.|.+ +...+
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~-~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNV-GSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCC-CCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc
Confidence            3567888885 9999999999999999999998766542 11222222367643        112333334433 22222


Q ss_pred             e---EEEecCCCCcccccceeEEEeeCC---CCccHHHHHHHHHHcCceEEEEE
Q 014754          326 R---VIIANRGPDTELLVANPVELCGKG---RPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       326 ~---v~i~~~~~~~~~~~~~~~~v~g~D---RpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      .   +.+. .       .-..+.+.|.+   +||++..+..+|++.|+||....
T Consensus        93 ~~~~i~~~-~-------~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           93 GAASIDGD-D-------TVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             TCSEEEEE-S-------SEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCceEEec-C-------CEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            1   1111 1       12478999976   99999999999999999998865

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.58  E-value=0.00093  Score=63.80  Aligned_cols=66  Identities=14%  Similarity=0.231  Sum_probs=50.9

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC   87 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L   87 (419)
                      ....++|.|||||||++++++.|+++|+||.+++-++   .|.++| ...+..+++  ...+.|++.|+...
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm-r~~~~~~~~--~~~~~L~~~f~~la   75 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFI-RVEFRQPDD--FDEAGFRAGLAERS   75 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE-EEEEECCSS--CCHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEE-EEEEecCCC--CCHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999884   566543 344433332  36788888887654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.55  E-value=0.0014  Score=57.36  Aligned_cols=108  Identities=18%  Similarity=0.114  Sum_probs=75.7

Q ss_pred             CCcEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEee--ecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccc
Q 014754           18 GEPHVITVNC-PDKTGLGCDICRIILDFGLYITKGDIS--TDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF   94 (419)
Q Consensus        18 ~~~~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~i~--tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~   94 (419)
                      .+...|+|.+ +|+||.++++...|+++|+||.--..+  .+|.. --.|.|...     ..++..+.|++.... .. .
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~-~isf~v~~~-----~~~~a~~~l~~~~~~-l~-~   94 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTT-DFSFTVPRG-----DYKQTLEILSERQDS-IG-A   94 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEE-EEEEEECGG-----GHHHHHHHHHHSSTT-TT-C
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCee-EEEEEEech-----HHHHHHHHHHHHHHH-cC-C
Confidence            3678889984 999999999999999999999865433  25643 356777332     234444566664322 11 0


Q ss_pred             ccccCCCCCCCCCeEEEEEEecC---cccHHHHHHHHHHhCCceEEE
Q 014754           95 YFNQLSTRPTCSPVYLLKLFCLD---RKGLLHDVTQVLCELELSIQR  138 (419)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~v~~~D---rpGLl~~i~~~l~~~glnI~~  138 (419)
                      . .    -........|.|++.+   +||+++++..+|++.|+||..
T Consensus        95 ~-~----i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A           95 A-S----IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             S-E----EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             c-e----EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence            0 0    0112358889999987   999999999999999999996

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.54  E-value=0.002  Score=61.50  Aligned_cols=111  Identities=12%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc-CCce
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML-HPLR  326 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~-~~~~  326 (419)
                      ..++|++.|+|||||++.|+..|+++|+||.++.-.+....+.+.-...++......    ..+.|++.|.+.-. -.+.
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCC----CHHHHHHHHHHHHHHTTCE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCC----CHHHHHHHHHHHHHHcCCE
Confidence            457999999999999999999999999999999875311233221111112222111    25777777643322 1344


Q ss_pred             EEEecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCce
Q 014754          327 VIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGIC  368 (419)
Q Consensus       327 v~i~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~  368 (419)
                      +.+.....      ..++-|-...+---+.++-...++-.++
T Consensus        81 ~~l~~~~~------~~ri~vl~Sg~g~nl~~ll~~~~~g~l~  116 (288)
T 3obi_A           81 WHMRDRET------RRKVMLLVSQSDHCLADILYRWRVGDLH  116 (288)
T ss_dssp             EEEEETTS------CEEEEEEECSCCHHHHHHHHHHHTTSSC
T ss_pred             EEeeccCC------CcEEEEEEcCCCCCHHHHHHHHHCCCCC
Confidence            55543321      1234443444444788888777665543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.54  E-value=0.00033  Score=67.13  Aligned_cols=66  Identities=12%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecC--CCCcccHHHHHHHHHhh
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPH--SSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~--~g~~~~~~~l~~~Le~~   86 (419)
                      ....++|.|||||||++++++.|+++|+||.+++-++   .|.+|| ...+..+  + .....+.|++.|+..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm-r~~~~~~~~~-~~~~~~~L~~~f~~l   79 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFV-RCVFHATDDA-DALRVDALRREFEPI   79 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEE-EEEEEECC-----CCHHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEE-EEEEEccCcc-cCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999884   666543 3333222  2 012677888777664

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.53  E-value=0.0003  Score=67.29  Aligned_cols=116  Identities=11%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      ....++|.|||||||++++++.|+++|+||++++.++   .|.+|| ...+..+..   ..+.|++.|+.......  +.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm-r~~~~~~~~---~~~~L~~~f~~la~~~~--m~   79 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM-RVSVEIPVA---GVNDFNSAFGKVVEKYN--AE   79 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE-EEEEECCC------CHHHHHHHHHHGGGT--CE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE-EEEEEcCCC---CHHHHHHHHHHHHHHcC--Ce
Confidence            4578999999999999999999999999999999874   666543 333432221   35577777766432211  10


Q ss_pred             cccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754           96 FNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      .....  ........|-+.+  +---|..+......-.+++.-+-+.+.
T Consensus        80 ~~l~~--~~~~~ri~vl~Sg--~g~nl~~ll~~~~~g~l~~~i~~Visn  124 (287)
T 3nrb_A           80 WWFRP--RTDRKKVVIMVSK--FDHCLGDLLYRHRLGELDMEVVGIISN  124 (287)
T ss_dssp             EEEEE--TTCCCEEEEEECS--CCHHHHHHHHHHHHTSSCCEEEEEEES
T ss_pred             eEeec--cCCCcEEEEEEeC--CCcCHHHHHHHHHCCCCCeEEEEEEeC
Confidence            00000  1112233333333  334566777666665555444455543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.51  E-value=0.00027  Score=54.49  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      .+.|.|.++||||++++|+++|++.|+||.+....+.+..+...|.+..++.  ...+.+.+.|++
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~--~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT--DKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH--HHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH--HHHHHHHHHHhc
Confidence            3578899999999999999999999999999998763324445565543321  133444444443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.50  E-value=0.00044  Score=66.47  Aligned_cols=68  Identities=18%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      ..++|+|.|+|||||+++||++|+++|+||.+++.++.. .|++.-...+..+.+.    ...++|++.|..+
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~----~~~~~L~~~l~~l   89 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLP----FDLDGFREAFTPI   89 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSS----SCHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCC----CCHHHHHHHHHHH
Confidence            367899999999999999999999999999999998542 4665544444322211    1356777777654

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.43  E-value=0.0018  Score=61.78  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=34.1

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEee
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSP  284 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t  284 (419)
                      ..++|+|.|+|||||++.|+..|+++|+||.++.-.+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~   43 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD   43 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec
Confidence            4579999999999999999999999999999988774

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.39  E-value=0.0032  Score=60.24  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEee
Q 014754          247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSP  284 (419)
Q Consensus       247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t  284 (419)
                      ...++|++.|+|||||++.|+..|+++|+||.++.-.+
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            34579999999999999999999999999999988774

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.34  E-value=0.001  Score=63.46  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      ..++|++.|+|||||+++||++|+++|+||.+++.++.. .|++.-...+..+.      ..+++|++.|..+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~------~~~~~L~~~f~~l   72 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV------AGVNDFNSAFGKV   72 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---------CHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC------CCHHHHHHHHHHH
Confidence            468999999999999999999999999999999997433 55554443332221      1234677777664

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.31  E-value=0.0018  Score=56.64  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             CCeeEEEEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCC--CCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ--GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~--g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      ++.+.|++.+ +|+||.++++..+|++.|+||..-..+. +.  .+...=.|+++.+     +.++..++-..+...++ 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~-~~~~~g~~~isf~V~~~-----d~~~a~~~L~~~~~~~~-   86 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGV-PGHDPSRQQMAFTVKKD-----FAQEALEALEPVLAEIG-   86 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCC-CCSCTTEEEEEEEEEGG-----GHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCceEEEEEEehH-----HHHHHHHHHHHHHHHhC-
Confidence            4678888887 8999999999999999999998754432 11  1122224777431     12222222223333444 


Q ss_pred             CceEEEecCCCCcccccceeEEEeeCC---CCccHHHHHHHHHHcCceEEEEE
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGKG---RPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~D---RpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      . .+.+...        -..+.+.|.+   +||++..+.++|++.||||....
T Consensus        87 ~-~v~~~~~--------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  130 (167)
T 2dt9_A           87 G-EAILRPD--------IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA  130 (167)
T ss_dssp             C-EEEEECS--------EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred             C-cEEEeCC--------EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            2 3333211        2378999976   99999999999999999995554

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.30  E-value=0.00096  Score=58.34  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .+.|+|...|+||+|++|+++|++.|+||.+..+.++.+ +...-+|.|. .     +...++.|.+.|.++.
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-----d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-----DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-----cHHHHHHHHHHHcCCC
Confidence            367999999999999999999999999999999986654 6666666665 1     2556778888888764

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.10  E-value=0.0018  Score=56.68  Aligned_cols=66  Identities=14%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ...|.|...|+||+|++|+++|++.|+||.+..+..+. .+...-+|.|..      ++..++.|.+.|.++.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCCC
Confidence            36799999999999999999999999999999997655 366666666652      2556778888888764

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.09  E-value=0.0081  Score=53.06  Aligned_cols=137  Identities=17%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             CCcEEEEE-EcCCCCChHHHHHHHHHhCCceEEEEEeee----cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc
Q 014754           18 GEPHVITV-NCPDKTGLGCDICRIILDFGLYITKGDIST----DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV   92 (419)
Q Consensus        18 ~~~~~v~V-~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t----dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~   92 (419)
                      .+.+.|+| ..+|+||.++++...|+++|+||.---.++    +|.. -..|.+...     +.++..+.|++.... ..
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~-~isf~v~~~-----d~~~a~~~l~~~~~~-~~   85 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTT-DITFTCPRS-----DGRRAMEILKKLQVQ-GN   85 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEE-EEEEEEEHH-----HHHHHHHHHHTTTTT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCce-EEEEEEccc-----cHHHHHHHHHHHHHh-cC
Confidence            46778888 469999999999999999999987644332    4332 124666332     234444556553211 11


Q ss_pred             ccccccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHH
Q 014754           93 SFYFNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQD  169 (419)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~  169 (419)
                       ..     ..........|.|+|.   +.||+++++..+|++.|+||..  +.|+.. .  -.|.|.        .++.+
T Consensus        86 -~~-----~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--istSe~-~--Is~vV~--------~~d~~  146 (178)
T 2dtj_A           86 -WT-----NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSEI-R--ISVLIR--------EDDLD  146 (178)
T ss_dssp             -CS-----EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEEETT-E--EEEEEE--------GGGHH
T ss_pred             -CC-----eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEcCCC-e--EEEEEe--------HHHHH
Confidence             00     0012346788899986   8999999999999999999996  334321 1  234442        23344


Q ss_pred             HHHHHHHHHHc
Q 014754          170 ETCEQLHAVLG  180 (419)
Q Consensus       170 ~l~~~L~~~l~  180 (419)
                      +..+.|.+.+.
T Consensus       147 ~Av~~Lh~~F~  157 (178)
T 2dtj_A          147 AAARALHEQFQ  157 (178)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            44455666663

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.07  E-value=0.0021  Score=56.92  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=71.3

Q ss_pred             CCeeEEEEE-EcCcchHHHHHHHHHHhCCeEEEEEEEeecCC-CCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          247 PAHTLLQIH-CVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ-GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       247 ~~~tvi~v~-~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~-g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      .+.+.|+|. ..|+||.++++...|++.|+||..-..++... .+...=.|.+..        +..++..+.|.+ +...
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHHh
Confidence            356778884 58999999999999999999998776553100 111111266643        122333344433 2221


Q ss_pred             c---eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 L---RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~---~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      +   .+.+..        .-..+.+.|.   ++||+...+.++|++.||||....
T Consensus        84 ~~~~~v~~~~--------~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           84 GNWTNVLYDD--------QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TTCSEEEEES--------CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCCCeEEEeC--------CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            1   122211        1247888886   899999999999999999998865

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.80  E-value=0.18  Score=52.90  Aligned_cols=191  Identities=14%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccc
Q 014754           18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF   94 (419)
Q Consensus        18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~   94 (419)
                      .+...|.|++.   ++||+.+++..+|++.|.||.-..  +...  -.+|.|...     +.++..+.|.+.+.......
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~--~Is~vI~~~-----d~~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV--KVSCVIDQR-----DADRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS--EEEEEEEGG-----GHHHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC--EEEEEEcHH-----HHHHHHHHHHHhhcccCCCc
Confidence            45778899985   799999999999999999997544  3333  245556332     34444467777763321000


Q ss_pred             cc-----ccC--CCCCCCCCeEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeec---CC--eEEEEEEEEcCCCC
Q 014754           95 YF-----NQL--STRPTCSPVYLLKLFC-LDRKGLLHDVTQVLCELELSIQRVKVTTTP---DG--RVLDLFFITDNREL  161 (419)
Q Consensus        95 ~~-----~~~--~~~~~~~~~~~i~v~~-~DrpGLl~~i~~~l~~~glnI~~a~i~T~~---~~--~~~d~F~V~~~~g~  161 (419)
                      ..     ...  ..-........|+|.. +|+||+.++|.+.|+++|+||.--......   +|  ..--.|.|.     
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~-----  498 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVA-----  498 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEE-----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEe-----
Confidence            00     000  0001123566777754 899999999999999999999643333221   23  233345554     


Q ss_pred             CCCHHHHHHHHHHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEE
Q 014754          162 LHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVV  241 (419)
Q Consensus       162 ~~~~~~~~~l~~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v  241 (419)
                         .+.+++..+.|++. ..+.                                                   .+.++.+
T Consensus       499 ---~~d~~~a~~~l~~~-~~~~---------------------------------------------------~~~~v~~  523 (600)
T 3l76_A          499 ---EGDSSQAEAILQPL-IKDW---------------------------------------------------LDAAIVV  523 (600)
T ss_dssp             ---HHHHHHHHHHHHHH-TTTS---------------------------------------------------TTCEEEE
T ss_pred             ---HHHHHHHHHHHHHH-HHhc---------------------------------------------------CCceEEE
Confidence               23334444444442 1110                                                   0123454


Q ss_pred             eCCCCCCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEE
Q 014754          242 DNSLSPAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGR  281 (419)
Q Consensus       242 ~n~~~~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~  281 (419)
                      +    .+...|.+.|   +.+||+.+.+.++|.+.|+||..-.
T Consensus       524 ~----~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          524 N----KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             E----CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             e----CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            4    3577888888   5799999999999999999997665

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.67  E-value=0.0033  Score=54.92  Aligned_cols=105  Identities=10%  Similarity=0.025  Sum_probs=71.9

Q ss_pred             CCCcEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEee-e---cCcEEEEEEEEecCCCCcccHHHHHHHHHh---hCC
Q 014754           17 PGEPHVITVNC-PDKTGLGCDICRIILDFGLYITKGDIS-T---DGIWCYIVLWVVPHSSSIIRWTNLKNRLML---ECP   88 (419)
Q Consensus        17 ~~~~~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~i~-t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~---~L~   88 (419)
                      ..+...|+|.+ +|+||..+++...|+++|+||.--... +   .|.. --.|.|...+     .++..+.|++   .+.
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~-~isf~V~~~d-----~~~a~~~L~~~~~~~~   86 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQ-QMAFTVKKDF-----AQEALEALEPVLAEIG   86 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEE-EEEEEEEGGG-----HHHHHHHHHHHHHHHC
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCce-EEEEEEehHH-----HHHHHHHHHHHHHHhC
Confidence            34677888877 999999999999999999999764332 1   3332 3457774322     2222233433   221


Q ss_pred             CCCcccccccCCCCCCCCCeEEEEEEecC---cccHHHHHHHHHHhCCceEEE
Q 014754           89 SCSVSFYFNQLSTRPTCSPVYLLKLFCLD---RKGLLHDVTQVLCELELSIQR  138 (419)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~D---rpGLl~~i~~~l~~~glnI~~  138 (419)
                      .  . .        ........+.|+|.+   +||+++++..+|++.|+||..
T Consensus        87 ~--~-v--------~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A           87 G--E-A--------ILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             C--E-E--------EEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred             C--c-E--------EEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence            1  0 0        112457789999976   999999999999999999963

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.61  E-value=0.007  Score=53.98  Aligned_cols=66  Identities=12%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ...|+|...|+||.|++|+++|++.|+||.+..+..+.+ +...-++.|...      +..++.|.+.|.++.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            578999999999999999999999999999988864444 566666666532      234667777777654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.59  E-value=0.22  Score=43.91  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=72.7

Q ss_pred             CeEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeec--CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccc
Q 014754          107 PVYLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTP--DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESC  183 (419)
Q Consensus       107 ~~~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~--~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~  183 (419)
                      +.+.|+|. .+|+||.+++|...|+++|+||.--......  .|..--.|.|....        .++..+.|.+.. .+.
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~--------~~~a~~~L~~~~-~el   85 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--------GPAAVEKLDSLR-NEI   85 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT--------HHHHHHHHHHTH-HHH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH--------HHHHHHHHHHHH-Hhc
Confidence            34556654 5899999999999999999999844332122  45555667775432        122223333321 110


Q ss_pred             cccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEc---Ccc
Q 014754          184 ISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCV---DHK  260 (419)
Q Consensus       184 ~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~---Drp  260 (419)
                                                                         ....|.++    .+...+.+.|.   ++|
T Consensus        86 ---------------------------------------------------~~~~v~~~----~~va~VsvVG~gm~~~~  110 (181)
T 3s1t_A           86 ---------------------------------------------------GFSQLLYD----DHIGKVSLIGAGMRSHP  110 (181)
T ss_dssp             ---------------------------------------------------CCSEEEEE----SCEEEEEEEEECCTTCH
T ss_pred             ---------------------------------------------------CcceEEEe----CCEEEEEEEecccccCc
Confidence                                                               01234443    25678888886   799


Q ss_pred             hHHHHHHHHHHhCCeEEEEEE
Q 014754          261 GLLYDIMRTLKDCNMKISYGR  281 (419)
Q Consensus       261 GLL~~i~~~l~~~g~~I~~a~  281 (419)
                      |+.+.+.++|.+.|+||....
T Consensus       111 Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          111 GVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEE
T ss_pred             hHHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999998766

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.50  E-value=0.011  Score=51.56  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCC-CeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQG-YRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g-~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      ...|+|...||||+|++|+.+|++.|+||.+..+.. +.. +...=+|.++  |    ++..++.|.++|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~-t~d~~~sriti~V~--~----d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLSRMTIQTV--G----DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE-CSCSSEEEEEEEEE--S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeee-cCCCCEEEEEEEEe--c----cHHHHHHHHHHHcCCC
Confidence            357899999999999999999999999999999875 342 3333234444  2    2467899998886543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.40  E-value=0.041  Score=48.68  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             CeeEEEEE-EcCcchHHHHHHHHHHhCCeEEEEEEEeecCC--CCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          248 AHTLLQIH-CVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ--GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       248 ~~tvi~v~-~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~--g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      +.+.|+|. -.|+||.+++|...|++.|++|..-.-+. +.  .+...=.|+++.+.     .+...++.+.+...+. .
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~-s~~~~g~~~isftv~~~~-----~~~a~~~L~~~~~el~-~   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV-SKVEDGKTDITFTCSRDV-----GPAAVEKLDSLRNEIG-F   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECC-CCTTTCEEEEEEEEETTT-----HHHHHHHHHHTHHHHC-C
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecC-CcccCCccEEEEEEehhH-----HHHHHHHHHHHHHhcC-c
Confidence            45666664 47999999999999999999997554321 12  22223347775421     1222222222333332 2


Q ss_pred             ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ..+.+...        -..+.+.|.   ++||+...+.++|++.||||....
T Consensus        88 ~~v~~~~~--------va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 SQLLYDDH--------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             SEEEEESC--------EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEEeCC--------EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            23333211        237888886   899999999999999999998887

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.20  E-value=0.013  Score=51.09  Aligned_cols=64  Identities=11%  Similarity=0.079  Sum_probs=45.8

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      +.+.+...||||+|.+|+.+|+++|+||.++.+......+.  ..-+|.+...       +....++...+++
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~--sritivV~~d-------~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTL--SRMTLVTNGP-------DEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTE--EEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCE--EEEEEEEecc-------HHHHHHHHHHhcC
Confidence            47888999999999999999999999999999875322233  5566666321       3344555555544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.99  E-value=0.024  Score=49.24  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEee
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSP  284 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t  284 (419)
                      -|+|.|.||+|||.+|+++|.++++||....+.+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~   35 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP   35 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence            3789999999999999999999999999999983

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.98  E-value=0.042  Score=49.42  Aligned_cols=113  Identities=15%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             CCeeEEEEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCC-CCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          247 PAHTLLQIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ-GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       247 ~~~tvi~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~-g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      ++.+.|+|.+ +|+||++++|...|++.|+||.--.-+.... .....-.|.+..     .+.....++...+...+.. 
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~-----~d~~~~~~~l~~~~~~~~~-  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-----DVGPAAVEKLDSLRNEIGF-  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG-----GGHHHHHHHHHTTHHHHCC-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch-----hhHHHHHHHHHHHHhhhce-
Confidence            4567788765 8999999999999999999997643221011 122333465532     1112222222233333321 


Q ss_pred             ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ..+.+...        -..+.++|.   .+||+-..+..+|++.||||.-..
T Consensus       107 ~~v~~~~~--------iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          107 SQLLYDDH--------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             SEEEEECC--------EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeEEEecC--------eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            22222111        237888884   889999999999999999998886

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.76  E-value=0.036  Score=48.02  Aligned_cols=60  Identities=17%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV  178 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~  178 (419)
                      .|+|.+.||+|++++|+.+|+.+++||..+.+.+  +|.    +++.-+   ..+.+.+..|...+..+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~--~g~----i~~~~~---~~~~~~~~~L~~~l~~i   61 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--IGR----IYLNFA---ELEFESFSSLMAEIRRI   61 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--TTE----EEEEEC---CCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec--CCE----EEEEEE---eCCHHHHHHHHHHHHcC
Confidence            4889999999999999999999999999999964  344    444332   12345566676666664

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.73  E-value=0.028  Score=50.61  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEE--eee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCC
Q 014754           17 PGEPHVITVNC-PDKTGLGCDICRIILDFGLYITKGD--IST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCS   91 (419)
Q Consensus        17 ~~~~~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~--i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~   91 (419)
                      ..+...|+|.+ ||+||+.++|...|++.|+||-=--  ++.  ++. .-..|.+...     ..++..+.|++......
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~-~~~sftv~~~-----d~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGK-TDITFTCSRD-----VGPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCE-EEEEEEEEGG-----GHHHHHHHHHTTHHHHC
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccc-eEEEEecchh-----hHHHHHHHHHHHHhhhc
Confidence            34577888875 9999999999999999999986432  111  343 3345766332     23333333333211000


Q ss_pred             cccccccCCCCCCCCCeEEEEEEe---cCcccHHHHHHHHHHhCCceEEEE
Q 014754           92 VSFYFNQLSTRPTCSPVYLLKLFC---LDRKGLLHDVTQVLCELELSIQRV  139 (419)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a  139 (419)
                      .    . .  .........|.|+|   ...||+.+++..+|++.|+||.--
T Consensus       106 ~----~-~--v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          106 F----S-Q--LLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             C----S-E--EEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             e----e-e--EEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence            0    0 0  01123466777776   578999999999999999999944

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.67  E-value=0.017  Score=52.33  Aligned_cols=49  Identities=22%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec----CCeEEEEEEEE
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP----DGRVLDLFFIT  156 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~----~~~~~d~F~V~  156 (419)
                      ...|.|.+.||||+|++|+++|+++++||...+..+..    ++.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            46789999999999999999999999999999998754    55665554443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.55  E-value=0.54  Score=47.01  Aligned_cols=110  Identities=20%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             CeEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeec--CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccc
Q 014754          107 PVYLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTP--DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESC  183 (419)
Q Consensus       107 ~~~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~--~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~  183 (419)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||.-....|..  .|...-.|.|...+     .   ++..+.|++. ..+.
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~-----~---~~a~~~l~~~-~~~~  333 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD-----G---RRAMEILKKL-QVQG  333 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT-----H---HHHHHHHHHH-HTTT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh-----H---HHHHHHHHHH-HHHc
Confidence            35567777 5899999999999999999999955443332  34444557665321     2   2223334432 1110


Q ss_pred             cccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEc---Ccc
Q 014754          184 ISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCV---DHK  260 (419)
Q Consensus       184 ~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~---Drp  260 (419)
                                                                         ....+.++    .+..++.|.|.   +.|
T Consensus       334 ---------------------------------------------------~~~~v~~~----~~~a~vsvVG~gm~~~~  358 (421)
T 3ab4_A          334 ---------------------------------------------------NWTNVLYD----DQVGKVSLVGAGMKSHP  358 (421)
T ss_dssp             ---------------------------------------------------TCSEEEEE----CCEEEEEEECGGGTSCT
T ss_pred             ---------------------------------------------------CCceEEEe----CCeEEEEEEccCcccCc
Confidence                                                               00134443    35778899986   689


Q ss_pred             hHHHHHHHHHHhCCeEEEEE
Q 014754          261 GLLYDIMRTLKDCNMKISYG  280 (419)
Q Consensus       261 GLL~~i~~~l~~~g~~I~~a  280 (419)
                      |++..+..+|.+.|+||.--
T Consensus       359 Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          359 GVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             THHHHHHHHHHHTTCCCCEE
T ss_pred             cHHHHHHHHHHHCCCCEEEE
Confidence            99999999999999999833

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.43  E-value=0.18  Score=50.57  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             CCeeEEEEE-EcCcchHHHHHHHHHHhCCeEEEEEEEeecCC--CCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIH-CVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ--GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~-~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~--g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|+|. -.|+||.+++|...|.+.|+||..-..++ ..  .+...=.|+++.+     +.++..++.+.+...+.-
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~-s~~~~g~~~isf~v~~~-----~~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV-FSVEDGTTDITFTCPRS-----DGRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC-CC--CCEEEEEEEEETT-----THHHHHHHHHHHHTTTTC
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC-ccccCCcceEEEEEech-----hHHHHHHHHHHHHHHcCC
Confidence            356778888 58999999999999999999998765443 12  1212224677541     222222222222222221


Q ss_pred             CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                       -.+.+...        -..+.+.|.   ++||+...+..+|++.||||....
T Consensus       336 -~~v~~~~~--------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          336 -TNVLYDDQ--------VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             -SEEEEECC--------EEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             -ceEEEeCC--------eEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence             12222111        236888885   799999999999999999998554

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.43  E-value=0.074  Score=47.34  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee-e-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccc
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS-T-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFN   97 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~-t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~   97 (419)
                      ...+.|+..|+||.+++++++|+..|+||.+-.+. + +....--++.|...+.   ..+.|.+.|.+..+-.. -....
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~---~ieqL~kQL~KLidVik-V~dl~  104 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDK---TIEQIEKQAYKLVEVVK-VTPID  104 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTT---HHHHHHHHHTTSTTEEE-EEECC
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHH---HHHHHHHHhcCcCceEE-EEEec
Confidence            35899999999999999999999999999988876 3 4232234566643332   45666666665432100 00000


Q ss_pred             cCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEE
Q 014754           98 QLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV  139 (419)
Q Consensus        98 ~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a  139 (419)
                      ........-+...|.|.+...   -.+|.+....++.+|.+.
T Consensus       105 ~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv  143 (193)
T 2fgc_A          105 PLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDV  143 (193)
T ss_dssp             SSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred             CCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence            000001122456777766443   667777777777777743

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.83  E-value=0.068  Score=48.40  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee------cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST------DGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t------dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ...+.|.+.||||++++++.+|++++.||...+.++      +|. +.-.+.+.+.     ..+.+.+.|++
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~-A~I~IEV~d~-----~Le~LL~kLrk   69 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK-ALIYFEIEGG-----DFEKILERVKT   69 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTE-EEEEEEECSS-----CHHHHHHHHHT
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCE-EEEEEEECCC-----CHHHHHHHHhC
Confidence            468899999999999999999999999999999886      344 3444666433     46667666665

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.46  E-value=0.075  Score=50.37  Aligned_cols=66  Identities=8%  Similarity=0.113  Sum_probs=48.1

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+-+.-.|+||-|+++...|+.+|||+.+++++.  ..+.. -.+.||+ |.+|..-+ +.. +..++.|+.
T Consensus       202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~Ffv-D~eg~~~d-~~v-~~aL~~L~~  267 (283)
T 2qmx_A          202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRP--SRKKA-FEYLFYA-DFIGHRED-QNV-HNALENLRE  267 (283)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TEEEEEE-EEESCTTS-HHH-HHHHHHHHT
T ss_pred             EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeE--cCCCC-cceEEEE-EEecCCCc-HHH-HHHHHHHHH
Confidence            4444446999999999999999999999999986  33443 5799999 77886544 333 444455543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.18  E-value=0.1  Score=50.21  Aligned_cols=67  Identities=10%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             eEEEeeC-CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          343 PVELCGK-GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       343 ~~~v~g~-DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      ++-+.-. |+||-|+++-..|+.+|||+.++++..  ..+.. -.|.||+ |.+|..-+ +.. +..++.|+..
T Consensus       203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~Ffi-D~eg~~~d-~~v-~~aL~~L~~~  270 (313)
T 3mwb_A          203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESRP--TGQYL-GHYFFSI-DADGHATD-SRV-ADALAGLHRI  270 (313)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TSEEEEE-EEESCTTS-HHH-HHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEee--cCCCC-ccEEEEE-EEeCCCCc-HHH-HHHHHHHHHh
Confidence            4445554 999999999999999999999999975  33443 5799999 77776533 333 4445555543

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=94.08  E-value=0.11  Score=50.38  Aligned_cols=59  Identities=12%  Similarity=0.100  Sum_probs=44.8

Q ss_pred             CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          350 GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       350 DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      |+||-|+++-..|+.+|||..++++..  ..+.. -.|.||+ |.+|..-+ +.. +..++.|+.
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~Ffi-D~eg~~~d-~~v-~~AL~~L~~  275 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRP--IKGRT-GTYSFIV-TLDAAPWE-ERF-RDALVEIAE  275 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEE-EEEEEEE-EESSCTTS-HHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeE--CCCCC-ccEEEEE-EEeCCcCC-HHH-HHHHHHHHH
Confidence            799999999999999999999999985  44444 6899998 88886544 333 334444443

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.96  E-value=0.11  Score=48.73  Aligned_cols=66  Identities=9%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             eEEEee---CCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          343 PVELCG---KGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       343 ~~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      .+-+.-   .|+||-|+++...|+.+|||+.+++++.  ..+.. -.+.||+ |.+  -+.++.. ++.++.|+..
T Consensus       188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~Ffi-D~e--~~~d~~v-~~aL~~L~~~  256 (267)
T 2qmw_A          188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRP--LKTQL-GMYRFFV-QAD--SAITTDI-KKVIAILETL  256 (267)
T ss_dssp             EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TCEEEEE-EES--CCSCHHH-HHHHHHHHHT
T ss_pred             EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEee--cCCCC-ccEEEEE-EEe--cCCcHHH-HHHHHHHHHh
Confidence            444555   7999999999999999999999999986  33333 5799999 666  3443333 4455555543

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.41  E-value=0.43  Score=45.16  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      ..|.|-+.-+|+||-|+++...|+.+|+|+.+-.-.- +.+....-.||+|.+|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRP-SRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTEEEEEEEEESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeE-cCCCCcceEEEEEEecCC
Confidence            3566666678999999999999999999998766553 234444556899988864

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=92.43  E-value=0.73  Score=46.44  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=72.3

Q ss_pred             CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754          247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH  323 (419)
Q Consensus       247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~  323 (419)
                      .+.+.|+|.+   .+.||++++|..+|.++|++|..-.-+    -...  .|.++.+.  +.  ...+++.+.|...+. 
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~----~~~i--s~~V~~~d--~~--~~~~~~~~el~~~~~-  364 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG----VDSV--SLVIEDCK--LD--GKCDKIIEEIKKQCN-  364 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE----TTEE--EEEEEHHH--HT--TTHHHHHHHHHHHSC-
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC----CCEE--EEEEecch--HH--HHHHHHHHHHHHhcC-
Confidence            3567899987   589999999999999999999754211    1222  37774311  00  023444445544432 


Q ss_pred             CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754          324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG  375 (419)
Q Consensus       324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~  375 (419)
                      .-.+.+...        -..+.++|.   .+||+...+..+|++.||||....-.
T Consensus       365 ~~~v~v~~~--------vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqg  411 (446)
T 3tvi_A          365 PDSIEIHPN--------MALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQG  411 (446)
T ss_dssp             CSEEEEEEE--------EEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCcEEEeCC--------eEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEec
Confidence            122332111        237888886   58999999999999999999887733

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.79  E-value=1.2  Score=42.91  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             eEEEEEEc--CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          250 TLLQIHCV--DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       250 tvi~v~~~--DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      +.+-+...  |+||-|+++...|+.+|+|+.+-.-.- +.+....-+||+|.+|..
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~eg~~  261 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRP-IKGRTGTYSFIVTLDAAP  261 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEEEEESSCT
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeE-CCCCCccEEEEEEEeCCc
Confidence            33334444  799999999999999999997665543 134333446788998864

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.12  E-value=0.61  Score=48.04  Aligned_cols=62  Identities=11%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      +.+-+.-.|+||++..|+..|.++||||..+.+.+...++.  +...+.++++    +.     +.+++.|++
T Consensus       455 ~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~--a~~~i~vd~~----~~-----~~~l~~l~~  516 (529)
T 1ygy_A          455 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPG--ATILLRLDQD----VP-----DDVRTAIAA  516 (529)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSC--EEEEEEESSC----CC-----HHHHHHHHH
T ss_pred             cEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCE--EEEEEEECCC----CC-----HHHHHHHhc
Confidence            35666678999999999999999999999999987545444  8888888443    55     556666654

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=90.78  E-value=0.64  Score=44.56  Aligned_cols=56  Identities=21%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             CCeeEEEEEEc-CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          247 PAHTLLQIHCV-DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       247 ~~~tvi~v~~~-DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      ...|.|-+..+ |+||-|+++...|+.+|+|+.+-.-.- +.+.-..-+||+|.+|..
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRP-TGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTSEEEEEEEESCT
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEee-cCCCCccEEEEEEEeCCC
Confidence            35677777775 999999999999999999997665543 133333445899988864

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.65  E-value=1.3  Score=44.68  Aligned_cols=108  Identities=14%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CcEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNC---PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~---~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +.+.|+|.+   ++.||..++|..+|+++|+||.-.  .+ |.. -..|.|...+-. ...+++.+.|+..+....  . 
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~~~-~is~~V~~~d~~-~~~~~~~~el~~~~~~~~--v-  368 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-GVD-SVSLVIEDCKLD-GKCDKIIEEIKKQCNPDS--I-  368 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-ETT-EEEEEEEHHHHT-TTHHHHHHHHHHHSCCSE--E-
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-CCC-EEEEEEecchHH-HHHHHHHHHHHHhcCCCc--E-
Confidence            345677775   699999999999999999998632  22 222 245666433210 023455566666553211  0 


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                             ........|.|+|.   ..||+.+++..+|++.|+||.-..-
T Consensus       369 -------~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          369 -------EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             -------EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             -------EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence                   11235778999986   5899999999999999999985443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.43  E-value=0.76  Score=45.70  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD  157 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~  157 (419)
                      ....|.+.-.|+||.+..|+.+|+++|+||......+ .++.++-++-+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            4556888899999999999999999999999999986 7888877777753

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=89.74  E-value=1.1  Score=41.82  Aligned_cols=53  Identities=25%  Similarity=0.276  Sum_probs=40.4

Q ss_pred             CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecC
Q 014754          247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKD  300 (419)
Q Consensus       247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~  300 (419)
                      ...|.|-+..   +|+||-|+++...|+.+|+|+.+-.-.- +.+....-.||+|.+
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP-~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRP-LKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTCEEEEEEES
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEee-cCCCCccEEEEEEEe
Confidence            3556777777   8999999999999999999998766553 234334456899887

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.28  E-value=1.4  Score=45.23  Aligned_cols=66  Identities=23%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHH
Q 014754          246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICS  315 (419)
Q Consensus       246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~  315 (419)
                      .+.+..+-+.-.|+||.+..++..|.++|+||...++.+...|+.+.-++-+|.   +++ ++.+++|++
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~---~~~-~~~l~~l~~  516 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ---DVP-DDVRTAIAA  516 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS---CCC-HHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC---CCC-HHHHHHHhc
Confidence            455778889999999999999999999999999999997434555553333332   334 455566653

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=88.02  E-value=1.2  Score=45.57  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCC-CcCC-CHHHHHHHHHHHHHHh
Q 014754          247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDG-KKIV-DPEKQSAICSRLKMEM  321 (419)
Q Consensus       247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g-~~~~-d~~~~~~l~~~L~~~l  321 (419)
                      .+.+.|+|.+   .++||++++|..+|.++|++|..-.-+    -..+  .|+++.+. .+.. ..+.++++.    ..+
T Consensus       339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss----e~si--s~~v~~~~~~~~~~~~~~l~~~~----~el  408 (510)
T 2cdq_A          339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSI--SLTLDPSKLWSRELIQQELDHVV----EEL  408 (510)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEE--EEEECCGGGSSSCCCHHHHHHHH----HHH
T ss_pred             CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC----CCeE--EEEEechHhhhhhHHHHHHHHHH----HHh
Confidence            3578899987   679999999999999999999877322    1222  37774321 1110 112333333    333


Q ss_pred             cCCceEEEecCCCCcccccceeEEEeeC--CCCccHHHHHHHHHHcCceEEEEE
Q 014754          322 LHPLRVIIANRGPDTELLVANPVELCGK--GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       322 ~~~~~v~i~~~~~~~~~~~~~~~~v~g~--DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ...-.+.+...        -..+.+.|.  .+||+...+..+|++.||||.-..
T Consensus       409 ~~~~~v~~~~~--------~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs  454 (510)
T 2cdq_A          409 EKIAVVNLLKG--------RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS  454 (510)
T ss_dssp             TTTSEEEEEEE--------EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred             CCCCeEEEeCC--------cEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE
Confidence            33223333211        127888887  779999999999999999998776

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=87.27  E-value=1.7  Score=43.11  Aligned_cols=64  Identities=11%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      +...+.+.-.|+||.+.+|+.+|+++|+||...+..+.|..++-++.|..+.  + -.+.+.+.|++
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~--~-~~~~~l~~l~~  393 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE--D-VAEKALQAMKA  393 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCH--H-HHHHHHHHHHT
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCC--C-CCHHHHHHHhc
Confidence            4567889999999999999999999999999999988776666666663321  0 12344455654

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=86.86  E-value=0.88  Score=38.77  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=62.9

Q ss_pred             CeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754          248 AHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP  324 (419)
Q Consensus       248 ~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~  324 (419)
                      +.+.|+|.+.   |+||.++++..+|++.|++|..-..+    ....  .|+++...       ..+++.+.|    ...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s----~~~I--sf~v~~~~-------~~~~il~~l----~~~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATS----EVGV--SLTIDNDK-------NLPDIVRAL----SDI   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECC----SSEE--EEEESCCT-------THHHHHHHH----TTT
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEec----CCEE--EEEECChH-------HHHHHHHHH----hcc
Confidence            5678888864   78999999999999999999655422    1222  37775311       233333333    222


Q ss_pred             ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754          325 LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA  373 (419)
Q Consensus       325 ~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~  373 (419)
                      ..+.+...        -..+.+.|.   ++||+...+..+|+  |+||....
T Consensus        80 ~~v~~~~~--------~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           80 GDVTVDKD--------MVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             EEEEEEEE--------EEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             CeEEEeCC--------eEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence            22332111        237788885   68999999999998  89887766

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=86.40  E-value=0.73  Score=45.86  Aligned_cols=67  Identities=10%  Similarity=0.034  Sum_probs=49.3

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      +++-+.-.++||-|+++...|+.+|||+.++++..  ..+.. -.+.||| |.+  ...+ ..-+.+++.|+..
T Consensus        35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRP--sk~~~-~eY~FfV-D~e--h~~d-~~v~~AL~eL~~~  101 (429)
T 1phz_A           35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRP--SRLNK-DEYEFFT-YLD--KRTK-PVLGSIIKSLRND  101 (429)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEE--CSSCT-TEEEEEE-CBC--GGGH-HHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeee--cCCCC-ccEEEEE-EEe--eCCC-HHHHHHHHHHHhh
Confidence            35555557899999999999999999999999975  33333 6899999 766  3332 3345666777665

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=85.71  E-value=2.4  Score=35.92  Aligned_cols=99  Identities=10%  Similarity=0.001  Sum_probs=63.5

Q ss_pred             CcEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754           19 EPHVITVNC---PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY   95 (419)
Q Consensus        19 ~~~~v~V~~---~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~   95 (419)
                      +...|+|.+   ++.||..+++...|+++|+||.--.  + +.. -.+|.|.+.+    ..+++.+.|.+     .... 
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~-s~~-~Isf~v~~~~----~~~~il~~l~~-----~~~v-   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--T-SEV-GVSLTIDNDK----NLPDIVRALSD-----IGDV-   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--C-CSS-EEEEEESCCT----THHHHHHHHTT-----TEEE-
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--e-cCC-EEEEEECChH----HHHHHHHHHhc-----cCeE-
Confidence            567888874   6889999999999999999985322  2 221 2466664322    34444344432     1100 


Q ss_pred             cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEE
Q 014754           96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVK  140 (419)
Q Consensus        96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~  140 (419)
                             ....+...|.|+|.   +.||+.+++..+|+  |+||.-..
T Consensus        83 -------~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           83 -------TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             -------EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             -------EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence                   11124677888875   68999999999999  99998543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.43  E-value=2.7  Score=41.90  Aligned_cols=49  Identities=14%  Similarity=0.160  Sum_probs=41.3

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEE
Q 014754           18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWV   66 (419)
Q Consensus        18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V   66 (419)
                      .+...|++.-+|.||.+.+|..+|+++|+||.+-...+.|.++.-+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            3578999999999999999999999999999987777877765444444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=83.07  E-value=3.5  Score=40.99  Aligned_cols=49  Identities=12%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI  155 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V  155 (419)
                      +....|.+.-.|.||.+..|..+|+++|+||..-...| .++.+.-+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT-DGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC-CCceEEEEEEe
Confidence            35789999999999999999999999999999887775 67777555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	4e-04

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT 156
           L++   ++ G+L D+T ++ E   +I   +      G       I 
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.77
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.7
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.68
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.55
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.3
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.24
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.68
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.63
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.58
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.48
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.46
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.4
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.4
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.37
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.34
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.27
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.17
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.91
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.84
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.81
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.8
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.61
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.55
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.52
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.51
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.73
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	87.56
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.38
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.5

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.77  E-value=1.2e-08  Score=78.35  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754           18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML   85 (419)
Q Consensus        18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~   85 (419)
                      ...+.|+|+|+||||++++++++|+++|+||.+++..+.|..+.-++.|.-+..   +.+++++.|++
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPS---NITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHH---HHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcc---cHHHHHHHHHH
Confidence            356899999999999999999999999999999999986655566666643321   44555555554

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=6.5e-08  Score=74.02  Aligned_cols=67  Identities=12%  Similarity=0.168  Sum_probs=55.4

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .++++|++.|+||||++++++++|+++|+||.+++..+ .++...-.+.|.-      ++..+++|++.|..+-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~-~~~~~~~~~~v~~------~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISG------SPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEE------CHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEE-ECCeeEEEEEEEc------CcccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999986 4777777777753      2445777888877753

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.68  E-value=6.6e-08  Score=73.43  Aligned_cols=64  Identities=22%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      +.|+|.||||||++++++++|+++|+||.+.+-++++..|.-.+.+..+.+.  +.+++++.|+..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~--~~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ--DFTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC--CHHHHHHHHHHH
Confidence            5799999999999999999999999999999988744334456666555443  567787777764

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.55  E-value=2.6e-07  Score=70.01  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ++|++.|+||||++++++++|+++|+||.+.+..+. ++.+.-.+.+..+.+.     ..++|++.|..+-
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~-~~~f~~~~~v~~~~~~-----~~~~l~~~l~~la   67 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSDEKQ-----DFTYLRNEFEAFG   67 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEESSCC-----CHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe-CCEEEEEEEEEEecCC-----CHHHHHHHHHHHH
Confidence            679999999999999999999999999999999864 6666666666544321     2456777777653

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.30  E-value=1.1e-06  Score=68.01  Aligned_cols=74  Identities=14%  Similarity=-0.031  Sum_probs=46.8

Q ss_pred             ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeecc--Cce--eeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754          341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTS--ERE--WEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL  416 (419)
Q Consensus       341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~--~~~--~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l  416 (419)
                      +..+.|.|.||||||++||++|+++|+||.+++..+....  +..  .-..++.+.-|++..+.   .-+.-.+.+..+|
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~---~l~~~l~~l~~~l   82 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLM---QLQEEFDALCTAL   82 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHH---HHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHH---HHHHHHHHHHHHc
Confidence            3467788999999999999999999999999997653211  110  02222333335554433   4444456666665


Q ss_pred             c
Q 014754          417 M  417 (419)
Q Consensus       417 ~  417 (419)
                      +
T Consensus        83 ~   83 (93)
T d1u8sa2          83 D   83 (93)
T ss_dssp             T
T ss_pred             e
Confidence            3

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.24  E-value=1.4e-06  Score=67.42  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC---eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG---RVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~---~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      -...|+|.|+|||||+++|+++|+++|+||.+.+..|..+.   ...+.|+..-.- ..++....+.|++.|+.+.
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~-~~p~~~~~~~l~~~l~~l~   79 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISA-RVDSGCNLMQLQEEFDALC   79 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEE-EECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEE-EcCccccHHHHHHHHHHHH
Confidence            45678899999999999999999999999999988764322   112334432211 1112223567888887754

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.68  E-value=2e-05  Score=58.35  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .+.+.+.||||+|++|+.++++.++||...+..++..+... ....|++.+..+ .+      .++++.|++
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~-~~~~i~v~~~~~-~l------~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHE-GKALIYFEIEGG-DF------EKILERVKT   66 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTT-TEEEEEEEECSS-CH------HHHHHHHHT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEE-EEEEEEEEcCcc-cH------HHHHHHHHc
Confidence            57899999999999999999999999999997764443332 567777755432 23      467777664

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=0.00014  Score=53.71  Aligned_cols=64  Identities=11%  Similarity=0.165  Sum_probs=49.0

Q ss_pred             ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754          341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA  415 (419)
Q Consensus       341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~  415 (419)
                      ++.+-+.-.||||++..|+..|.+.|+||..+...+...++.  +...+.+ |  + ++.     +.+++.|++.
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~--a~~vi~v-D--~-~~~-----~~vl~~I~~~   66 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPG--ATILLRL-D--Q-DVP-----DDVRTAIAAA   66 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSC--EEEEEEE-S--S-CCC-----HHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCe--EEEEEEc-C--C-Ccc-----HHHHHHHHcC
Confidence            457788889999999999999999999999999887555554  5555555 2  2 466     6777777653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=5.8e-05  Score=55.79  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeE--EEEEEEEcC
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRV--LDLFFITDN  158 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~--~d~F~V~~~  158 (419)
                      ..|.|.+.||||+|++|+.+|+++|+||......+..+|.+  .-.|++.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            45899999999999999999999999999999887666543  345555543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.48  E-value=0.00015  Score=52.62  Aligned_cols=47  Identities=13%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD  157 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~  157 (419)
                      +|.|..+|+||-|++++++|++.|+||+...++.+ +++..-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~-~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN-NNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE-TTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC-CCcEEEEEEECC
Confidence            47888999999999999999999999999999965 678888888753

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00044  Score=50.98  Aligned_cols=49  Identities=18%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEE
Q 014754          107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFI  155 (419)
Q Consensus       107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V  155 (419)
                      +.+.+.+.-.|+||++++|+++|+++|+||......+. .++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            35678888999999999999999999999999988653 45666666655

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.40  E-value=0.00016  Score=52.43  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecC
Q 014754           22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPH   69 (419)
Q Consensus        22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~   69 (419)
                      +|.|..+|+||-+++++++|+++|+||...+.+..+...+.+|.|.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            467888999999999999999999999999988755556778888443

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00042  Score=50.66  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=48.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..+.+...|+||+|+++++.|+..|+||.+..+.-+.+ +..--++ +...     +++.++++...|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~ti-vv~~-----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTI-QTVG-----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEE-EEES-----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEE-EEEC-----CHHHHHHHHHHHhCCC
Confidence            35889999999999999999999999999999874444 3333333 3221     3556778888887765

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.0003  Score=51.71  Aligned_cols=66  Identities=11%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      .+.|.+...|+||+|+++++.|+..|+||.+..+..+.+. ..--++.+..      +++..+++...|.+..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g------~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG------DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE------CTTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc------CHHHHHHHHHHHhCCc
Confidence            4578999999999999999999999999999998765543 3333343331      1334566766666654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.34  E-value=0.00036  Score=51.16  Aligned_cols=65  Identities=14%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754          109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL  179 (419)
Q Consensus       109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l  179 (419)
                      ..|.+...|+||+|+++++.|+..|+||.+..+.-+. .|..--++.+..      +++.++++...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence            4688999999999999999999999999999987444 445544555442      2556778888888765

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.27  E-value=0.00047  Score=49.67  Aligned_cols=47  Identities=15%  Similarity=0.177  Sum_probs=39.9

Q ss_pred             eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754          343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE  393 (419)
Q Consensus       343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d  393 (419)
                      .+.|.-.||||.|.+++.+|++.|+||..+.+..  +...  ...+|.+++
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~--t~~~--~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADF--GILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSC--EEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEee--cCCC--CEEEEEECC
Confidence            5788899999999999999999999999999864  3333  788987754

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.17  E-value=0.0005  Score=49.51  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEE
Q 014754          110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT  156 (419)
Q Consensus       110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~  156 (419)
                      .|.|...||||.|++++++|++.|+||.+..+..+ .+..+--|.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t-~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN-ADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC-SSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeec-CCCCEEEEEEC
Confidence            58899999999999999999999999999999865 45555556553

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00056  Score=52.56  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHc
Q 014754          342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALM  417 (419)
Q Consensus       342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~  417 (419)
                      +++-..-.|+||-|+++...|+++|||+.++++..  ..+.. -.+.||+ |.+|.  .+ ...+.+++.|+.++.
T Consensus        17 tSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP--~~~~~-~~Y~F~i-d~eg~--~~-~~i~~~l~~L~~~~~   85 (97)
T d1phza1          17 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRP--SRLNK-DEYEFFT-YLDKR--TK-PVLGSIIKSLRNDIG   85 (97)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEE--CSSCT-TEEEEEE-CBCGG--GH-HHHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeec--cCCCC-ceEEEEE-EcccC--Ch-HHHHHHHHHHHHhhC
Confidence            46666778999999999999999999999999875  33333 5789999 77775  22 335677788877654

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0032  Score=46.73  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=35.3

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCc
Q 014754           19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGI   58 (419)
Q Consensus        19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~   58 (419)
                      +...+++.-.|+||.+++|+++|+++|+||.+....+.+.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~   49 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQ   49 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSS
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCC
Confidence            5578889999999999999999999999999988777443

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0063  Score=45.04  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754          108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT  144 (419)
Q Consensus       108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~  144 (419)
                      ...+.+.-.|+||.+++|+++|+++|+||.+....+.
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~   47 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTS   47 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccC
Confidence            4678888999999999999999999999999888753

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.80  E-value=0.0018  Score=47.82  Aligned_cols=61  Identities=10%  Similarity=0.151  Sum_probs=46.2

Q ss_pred             eeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754          347 CGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR  414 (419)
Q Consensus       347 ~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~  414 (419)
                      .-.|+||-|+++-..|+++|||+.++++..  ..+.. -.+.||+ |.+|.. . + .-+.+++.|+.
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP--~~~~~-~~Y~F~i-d~~g~~-~-~-~~~~~l~~L~~   68 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRP--LKTQL-GMYRFFV-QADSAI-T-T-DIKKVIAILET   68 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TCEEEEE-EESCCS-C-H-HHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeee--cCCCC-ceEEEEE-EEecCC-c-H-HHHHHHHHHHH
Confidence            346999999999999999999999999985  33333 5899999 777753 4 3 34566666654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0049  Score=44.77  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      .+.+...|+||+|..++..|+..|+||.+-.+.. |.-.....+=++ ..|    +++..+++..+|.+.+
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~-te~~~iSR~tiv-v~~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAP-TDDPTLSRMTIQ-TVG----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE-CSCSSEEEEEEE-EES----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcc-cCCCCeeEEEEE-EEC----CHHHHHHHHHHHhCCC
Confidence            5788889999999999999999999999999985 454444432233 222    2467888888876554

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.0077  Score=43.91  Aligned_cols=63  Identities=11%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754           21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE   86 (419)
Q Consensus        21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~   86 (419)
                      ..+.++..|+||+++++++.|+..|+||.+-....  +....=-++.+ ..+..  ..+.+.+.|++.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g~~~--~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KGDDK--TIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EECTT--HHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-EcCHH--HHHHHHHHHhCC
Confidence            46889999999999999999999999999888763  44432223333 32222  456665666554

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.0037  Score=47.79  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             CCCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCC
Q 014754          244 SLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGK  302 (419)
Q Consensus       244 ~~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~  302 (419)
                      ......|-|-+..+|+||-|+++...|+++|+|+.+-.-.- ..+....=.||++.+|.
T Consensus        11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP-~~~~~~~Y~F~id~eg~   68 (97)
T d1phza1          11 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRP-SRLNKDEYEFFTYLDKR   68 (97)
T ss_dssp             CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEE-CSSCTTEEEEEECBCGG
T ss_pred             CCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeec-cCCCCceEEEEEEcccC
Confidence            34456677888889999999999999999999996554432 13333333589998885

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.51  E-value=0.0043  Score=45.20  Aligned_cols=65  Identities=12%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEE-EEEEecCCCcCCCHHHHHHHHHHHHHHh
Q 014754          250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLD-LFIQQKDGKKIVDPEKQSAICSRLKMEM  321 (419)
Q Consensus       250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D-~F~v~~~g~~~~d~~~~~~l~~~L~~~l  321 (419)
                      ..|.+...|+||+|..|+..|+..|+||.+-.+.. |.-..... ++.+.  |    +++..+++..+|.+.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~-te~~~iSRmtivv~--~----~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAP-TEDPTLSRMTLVTN--G----PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEE-CSSTTEEEEEEEEE--E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEec-cCCCCeEEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence            46789999999999999999999999999999985 34333332 22333  2    2467888888886554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.73  E-value=0.024  Score=41.40  Aligned_cols=51  Identities=24%  Similarity=0.270  Sum_probs=37.2

Q ss_pred             EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754          252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK  303 (419)
Q Consensus       252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~  303 (419)
                      +-+.-.|+||-|+++...|+++|+|+.+-.-.- ..+....=.||++.+|..
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP-~~~~~~~Y~F~id~~g~~   55 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRP-LKTQLGMYRFFVQADSAI   55 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEE-CSSSTTCEEEEEEESCCS
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeee-cCCCCceEEEEEEEecCC
Confidence            334446999999999999999999998766543 134333445899988853

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.56  E-value=1.3  Score=32.37  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEE
Q 014754          107 PVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVK  140 (419)
Q Consensus       107 ~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~  140 (419)
                      +.+.|+|.+.   ++||+++++..+|+++|+||.-..
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            5678999874   999999999999999999999543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.38  E-value=2.3  Score=31.52  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754          107 PVYLLKLFC---LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG  180 (419)
Q Consensus       107 ~~~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~  180 (419)
                      ....|++.|   +++||+.+++..+|++.|+||.-....+.  + .--.|.|...        +.++..+.|.+.+.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~S--e-~~Isf~V~~~--------d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS--E-TNISLVVSEE--------DVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT--T-CCEEEEECST--------THHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCC--c-ceEEEEEeHH--------HHHHHHHHHHHHHH
Confidence            467899988   69999999999999999999995443222  2 2234555332        33455566666664

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.50  E-value=3.2  Score=28.29  Aligned_cols=32  Identities=13%  Similarity=0.217  Sum_probs=27.4

Q ss_pred             EEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 014754          110 LLKLFC---LDRKGLLHDVTQVLCELELSIQRVKV  141 (419)
Q Consensus       110 ~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~i  141 (419)
                      .|.++|   .++||+.+++..+|++.|+||.-...
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq   37 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQ   37 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeee
Confidence            577877   58999999999999999999995443