Citrus Sinensis ID: 014784

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

cccccccccccccccccccccEEEEEcccccccEEEEEEccEEEEHHHHHHcccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccEEEccHHHHHHHHHHHcccccccccccccccEEEEcccccEEEccccEEcccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHcccEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEccccccccHHHHHHHHHHcccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEccc

ccccEccccccccccccccccEEEEEEccEEEEEEEEEEccEEEEHHHHHHcccccccccccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHEcccHHHHccHHHHHHHEEEHHHEEEEcccccccEEEEcccHHHHHHHHHHHHcccccccccccccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc

malqsfievepdshfpiqnlpygvfkpepasvarpgvaiGEYVLDLSEiskaglfngpilkdsdcflqpnlnkflslgrPAWKEARDMLQKLLSSneatlrdnanlrqkslvpmgkvemllpmeigdytdffssmhhakncgtifrgpanavpanwfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsnfkYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSsneatlrdnanlrqkslvpmgkVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp

MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

*************HFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDML*********************LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****

*ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKED*CVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS*P

***QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMxxxxxxxxxxxxxxxxxxxxxSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		418	2.2.26 [Sep-21-2011]
A5PKH3		419	Fumarylacetoacetase OS=Bo	yes	no	0.980	0.978	0.588	1e-143
P16930		419	Fumarylacetoacetase OS=Ho	yes	no	0.980	0.978	0.586	1e-141
P25093		419	Fumarylacetoacetase OS=Ra	yes	no	0.980	0.978	0.579	1e-140
Q1ZXQ1		427	Fumarylacetoacetase OS=Di	yes	no	0.988	0.967	0.570	1e-138
P35505		419	Fumarylacetoacetase OS=Mu	yes	no	0.980	0.978	0.574	1e-138
Q00770		431	Fumarylacetoacetase OS=Em	yes	no	0.983	0.953	0.494	1e-109
O06724		301	Uncharacterized protein Y	yes	no	0.301	0.418	0.273	6e-06
O58377		230	Uncharacterized protein P	yes	no	0.418	0.760	0.248	3e-05
Q59050		237	Uncharacterized protein M	yes	no	0.198	0.350	0.279	9e-05
Q2KIB0		314	Fumarylacetoacetate hydro	no	no	0.373	0.496	0.293	0.0002

>sp\|A5PKH3\|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1	Back alignment and function desciption

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/416 (58%), Positives = 301/416 (72%), Gaps = 6/416 (1%)

Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK-DS 63
           SF+ V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GPIL    
Sbjct: 2   SFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKH--LFTGPILSGHQ 59

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
           D F +P LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP 
Sbjct: 60  DVFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPA 119

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
            IGDYTDF+SS HHA N G +FRG  NA+  NW HLP+ YHGRASSVV+SGT I RP GQ
Sbjct: 120 TIGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQ 179

Query: 184 FAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
             P  + PP +G  + LDFELEMA  VGPGN+LG+PI +++A +HIFG++LMNDWSARDI
Sbjct: 180 MRPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDI 239

Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
           Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +P+QDP+PLPYL       +DI+L
Sbjct: 240 QKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINL 299

Query: 304 EVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 361
            V +K  G   +  + RSNFK  YWT+ QQL HH++NGCNL+ GDLL +GTISGPEPES 
Sbjct: 300 SVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESF 359

Query: 362 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
           GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct: 360 GCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2

>sp\|P16930\|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	Back alignment and function description

>sp\|P25093\|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1	Back alignment and function description

>sp\|Q1ZXQ1\|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1	Back alignment and function description

>sp\|P35505\|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2	Back alignment and function description

>sp\|Q00770\|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3	Back alignment and function description

>sp\|O06724\|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1	Back alignment and function description

>sp\|O58377\|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1	Back alignment and function description

>sp\|Q59050\|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1	Back alignment and function description

>sp\|Q2KIB0\|FAHD2_BOVIN Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Bos taurus GN=FAHD2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		418
255559084		421	fumarylacetoacetate hydrolase, putative	0.995	0.988	0.849	0.0
224086373		419	predicted protein [Populus trichocarpa]	0.995	0.992	0.842	0.0
147771009		419	hypothetical protein VITISV_033628 [Viti	0.997	0.995	0.830	0.0
359495556		419	PREDICTED: fumarylacetoacetase-like [Vit	0.997	0.995	0.828	0.0
297844060		421	hypothetical protein ARALYDRAFT_471353 [	0.995	0.988	0.799	0.0
357447871		421	Fumarylacetoacetase [Medicago truncatula	0.995	0.988	0.791	0.0
22329501		421	fumarylacetoacetase [Arabidopsis thalian	0.995	0.988	0.796	0.0
449434018		430	PREDICTED: fumarylacetoacetase-like [Cuc	0.997	0.969	0.792	0.0
388508774		421	unknown [Lotus japonicus]	0.995	0.988	0.789	0.0
356555724		421	PREDICTED: fumarylacetoacetase-like [Gly	0.997	0.990	0.770	0.0

>gi\|255559084\|ref\|XP_002520564.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi\|223540224\|gb\|EEF41797.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/418 (84%), Positives = 382/418 (91%), Gaps = 2/418 (0%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
           MAL+SFIEV PDSHFPIQNLPYGVFKPEP S  RP VAIG+Y+LDLSEI+ AGLF+GP L
Sbjct: 1   MALKSFIEVHPDSHFPIQNLPYGVFKPEPTSTPRPAVAIGDYILDLSEITLAGLFDGPTL 60

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
           K+SDCFLQPNLNKF++LGRPAWKEAR  LQKLLSS E  LRD+ NLRQKSL+P+ KVEM+
Sbjct: 61  KNSDCFLQPNLNKFIALGRPAWKEARSTLQKLLSSTEPALRDDRNLRQKSLLPLSKVEMV 120

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP 180
           LP+ IGDYTDFFSSMHHAKNCGTIFRGP N +PANWFHLPIAYHGRASSVV+SGT IVRP
Sbjct: 121 LPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANWFHLPIAYHGRASSVVVSGTGIVRP 180

Query: 181 RGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSA 240
           RGQ  P+GNSP  FGPSQKLDFELEMAAVVGPGNELGKP+DVNEA DH+FG++LMNDWSA
Sbjct: 181 RGQGHPAGNSPLYFGPSQKLDFELEMAAVVGPGNELGKPVDVNEAGDHLFGLVLMNDWSA 240

Query: 241 RDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYD 300
           RDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACD+PKQDP PLPYLAEKISKNYD
Sbjct: 241 RDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAPKQDPHPLPYLAEKISKNYD 300

Query: 301 ISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEP 358
           ISLEVQIK AGKED+CVVTRSNFK  YWTLTQQLAHHTINGCNLR GDLLGTGTISGPEP
Sbjct: 301 ISLEVQIKAAGKEDACVVTRSNFKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGPEP 360

Query: 359 ESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
           ES GCLLELTWNGQKPLSL+G  RKFLEDGDEV F+G  KG+GY VGFGTC GKI+PS
Sbjct: 361 ESYGCLLELTWNGQKPLSLNGTERKFLEDGDEVIFSGCSKGDGYNVGFGTCFGKILPS 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224086373\|ref\|XP_002307870.1\| predicted protein [Populus trichocarpa] gi\|118481189\|gb\|ABK92546.1\| unknown [Populus trichocarpa] gi\|222853846\|gb\|EEE91393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147771009\|emb\|CAN77935.1\| hypothetical protein VITISV_033628 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495556\|ref\|XP_003635021.1\| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi\|297741817\|emb\|CBI33122.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297844060\|ref\|XP_002889911.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi\|297335753\|gb\|EFH66170.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357447871\|ref\|XP_003594211.1\| Fumarylacetoacetase [Medicago truncatula] gi\|87241152\|gb\|ABD33010.1\| Fumarylacetoacetase [Medicago truncatula] gi\|355483259\|gb\|AES64462.1\| Fumarylacetoacetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|22329501\|ref\|NP_172669.2\| fumarylacetoacetase [Arabidopsis thaliana] gi\|20334820\|gb\|AAM16166.1\| At1g12050/F12F1_8 [Arabidopsis thaliana] gi\|332190709\|gb\|AEE28830.1\| fumarylacetoacetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449434018\|ref\|XP_004134793.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi\|449516307\|ref\|XP_004165188.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388508774\|gb\|AFK42453.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|356555724\|ref\|XP_003546180.1\| PREDICTED: fumarylacetoacetase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		418
TAIR\|locus:2008845		421	FAH "AT1G12050" [Arabidopsis t	0.995	0.988	0.775	6.1e-181
UNIPROTKB\|F1NYW8		421	FAH "Uncharacterized protein"	0.980	0.973	0.596	1.7e-130
UNIPROTKB\|A5PKH3		419	FAH "Fumarylacetoacetase" [Bos	0.980	0.978	0.579	3.5e-130
UNIPROTKB\|F1MYZ7		419	FAH "Fumarylacetoacetase" [Bos	0.980	0.978	0.579	3.5e-130
UNIPROTKB\|F1RIF3		419	FAH "Uncharacterized protein"	0.980	0.978	0.581	1.1e-128
UNIPROTKB\|P16930		419	FAH "Fumarylacetoacetase" [Hom	0.980	0.978	0.576	3.6e-128
RGD\|61932		419	Fah "fumarylacetoacetate hydro	0.980	0.978	0.567	2.9e-126
MGI\|MGI:95482		419	Fah "fumarylacetoacetate hydro	0.980	0.978	0.564	5.5e-125
DICTYBASE\|DDB_G0271094		427	fah "fumarylacetoacetase" [Dic	0.988	0.967	0.560	7e-125
UNIPROTKB\|E2RS63		418	FAH "Uncharacterized protein"	0.983	0.983	0.566	2.4e-124

TAIR\|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1756 (623.2 bits), Expect = 6.1e-181, P = 6.1e-181
 Identities = 324/418 (77%), Positives = 363/418 (86%)

Query:     3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKD 62
             L+SFI+V  DSHFPIQNLPYGVFKPE  S  RP VAIG+ VLDLS IS+AGLF+G ILKD
Sbjct:     4 LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRPAVAIGDLVLDLSAISEAGLFDGLILKD 63

Query:    63 SDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
             +DCFLQPNLNKFL++GRPAWKEAR  LQ++LSSNE  LRDN  LR+KS   M KVEM++P
Sbjct:    64 ADCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEMIVP 123

Query:   123 MEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRG 182
             M IGDYTDFF+SMHHAKNCG +FRGP NA+  NWF LPIAYHGRASS+VISGTDI+RPRG
Sbjct:   124 MVIGDYTDFFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDIIRPRG 183

Query:   183 QFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD 242
             Q              +KLDFELEMAAVVGPGNELGKPIDVN AADHIFG++LMNDWSARD
Sbjct:   184 QGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDWSARD 243

Query:   243 IQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDIS 302
             IQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPF C +PKQDP PLPYLAEK S NYDIS
Sbjct:   244 IQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVNYDIS 303

Query:   303 LEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPES 360
             LEVQ+KP+G++DSCV+T+SNF+  YWT+TQQLAHHT+NGCNLR GDLLGTGTISGPEP+S
Sbjct:   304 LEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGPEPDS 363

Query:   361 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 418
              GCLLELTWNGQKPLSL+G T+ FLEDGD+VTF+G CKG+GY VGFGTC+GKIVPS P
Sbjct:   364 YGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGFGTCTGKIVPSPP 421

GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA

GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

UNIPROTKB\|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271094 fah "fumarylacetoacetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5PKH3	FAAA_BOVIN	3, ., 7, ., 1, ., 2	0.5889	0.9808	0.9785	yes	no
P35505	FAAA_MOUSE	3, ., 7, ., 1, ., 2	0.5745	0.9808	0.9785	yes	no
Q1ZXQ1	FAAA_DICDI	3, ., 7, ., 1, ., 2	0.5700	0.9880	0.9672	yes	no
P25093	FAAA_RAT	3, ., 7, ., 1, ., 2	0.5793	0.9808	0.9785	yes	no
P16930	FAAA_HUMAN	3, ., 7, ., 1, ., 2	0.5865	0.9808	0.9785	yes	no
Q00770	FAAA_EMENI	3, ., 7, ., 1, ., 2	0.4941	0.9832	0.9535	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.7.1.2	0.946
3rd Layer	3.7.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		418
PLN02856		424	PLN02856, PLN02856, fumarylacetoacetase	0.0
TIGR01266		415	TIGR01266, fum_ac_acetase, fumarylacetoacetase	0.0
pfam09298		101	pfam09298, DUF1969, Domain of unknown function (DU	1e-40
pfam01557		207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	2e-33
COG0179		266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	6e-32

>gnl\|CDD\|215461 PLN02856, PLN02856, fumarylacetoacetase	Back alignment and domain information

 Score =  787 bits (2034), Expect = 0.0
 Identities = 312/422 (73%), Positives = 349/422 (82%), Gaps = 4/422 (0%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
             L+SFI+V PDS FPIQNLPYGVF PE  +  RPGVAIG+YVLDLS +S+AGLF+GP+L
Sbjct: 3   SPLKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLL 62

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
            DSDCF QP LNKF+++GRPAWKEAR  LQ+LLS++E  LRDN+ LR+K+  PM  VEML
Sbjct: 63  SDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEML 122

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP 180
           LP  IGDYTDFFSS  HA N GT+FRGP NA+  NW HLPI YHGRASSVV SGTDI RP
Sbjct: 123 LPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRP 182

Query: 181 RGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 239
           RGQ  P  G+S P FGPS KLDFELEMAA VGPGNELGKPI VNEA DHIFG++LMNDWS
Sbjct: 183 RGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWS 242

Query: 240 ARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNY 299
           ARDIQ WEYVPLGPFLGKSF TT+SPWIVTLDALEPF CD+P QDP PLPYLAEK  K+Y
Sbjct: 243 ARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSY 302

Query: 300 DISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPE 357
           DISLEV IKPAG+  + VV RSNFK  YWTL QQLAHHT+NGCNLR GDLLG+GTISGPE
Sbjct: 303 DISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPE 362

Query: 358 PESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
           P SLGCLLELTW G + +SL  G  RKFLEDGDEV  +G+CKG+GY VGFGTCSGK++P+
Sbjct: 363 PGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPA 422

Query: 417 TP 418
            P
Sbjct: 423 LP 424

Length = 424

>gnl\|CDD\|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase	Back alignment and domain information

>gnl\|CDD\|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969)	Back alignment and domain information

>gnl\|CDD\|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	Back alignment and domain information

>gnl\|CDD\|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		418
PLN02856		424	fumarylacetoacetase	100.0
TIGR01266		415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	100.0
KOG2843		420	consensus Fumarylacetoacetase [Carbohydrate transp	100.0
COG0179		266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303		245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535		217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK10691		219	hypothetical protein; Provisional	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK12764		500	hypothetical protein; Provisional	100.0
PF01557		218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	100.0
TIGR02305		205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	100.0
TIGR03220		255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.84
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.78
PF09298		107	FAA_hydrolase_N: Fumarylacetoacetase N-terminal; I	99.67
TIGR02312		267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.59
COG3970		379	Fumarylacetoacetate (FAA) hydrolase family protein	99.47
TIGR03218		263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	99.23
COG3971		264	2-keto-4-pentenoate hydratase [Secondary metabolit	98.86
PF11010		194	DUF2848: Protein of unknown function (DUF2848); In	98.21
COG3802		333	GguC Uncharacterized protein conserved in bacteria	98.1
PF10370		50	DUF2437: Domain of unknown function (DUF2437); Int	85.28

>PLN02856 fumarylacetoacetase	Back alignment and domain information

Probab=100.00  E-value=2.1e-98  Score=762.41  Aligned_cols=416  Identities=75%  Similarity=1.301  Sum_probs=379.8

Q ss_pred             cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhH
Q 014784            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW   82 (418)
Q Consensus         3 ~~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~   82 (418)
                      ++|||+++++|||+|+|||||+|++.+++.+|+|+.+||+|+||+++...+++.+.......+|..++||+|+++|..+|
T Consensus         5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~   84 (424)
T PLN02856          5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW   84 (424)
T ss_pred             ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence            57999999999999999999999998777999999999999999999887777653212246889999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCCcccCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCee
Q 014784           83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA  162 (418)
Q Consensus        83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~  162 (418)
                      .++|+.|+.++++....++++..+....++|+++|+|++|+.+++|+||++|.+|+.|+|+.|++++++++|+|++.|++
T Consensus        85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~  164 (424)
T PLN02856         85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIG  164 (424)
T ss_pred             HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCE
Confidence            99999999999876655555555555678999999999999999999999999999999998888777788999999999


Q ss_pred             eecCCcccccCCCeeeCCCCCcCCCC-CCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchh
Q 014784          163 YHGRASSVVISGTDIVRPRGQFAPSG-NSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR  241 (418)
Q Consensus       163 f~k~~ssivg~g~~I~~P~~~~~~~~-~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaR  241 (418)
                      |+|++|||+++|++|.+|.++.++.+ ...|.|.+++++|||+|||+||||++++|++|++++|++|||||||+||||||
T Consensus       165 y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR  244 (424)
T PLN02856        165 YHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR  244 (424)
T ss_pred             EcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence            99999999999999999998765422 23488889999999999999999988789999999999999999999999999


Q ss_pred             hHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEec
Q 014784          242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS  321 (418)
Q Consensus       242 D~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~  321 (418)
                      |+|.||+.++||++||+|+|+|||||||.|+++++++..|..++..++||++.++.+++|+|+|.++.|+..|++++|++
T Consensus       245 DiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~  324 (424)
T PLN02856        245 DIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRS  324 (424)
T ss_pred             hhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcC
Confidence            99999999999999999999999999999999999888888889999999999988999999998876654488999999


Q ss_pred             CCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEe
Q 014784          322 NFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK  398 (418)
Q Consensus       322 ~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~  398 (418)
                      |++  +|+++|||+|++|++|+|+|||||+||||+|+++.+.||++|++++|++++++.++ .++||+|||+|+++++|.
T Consensus       325 nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~  404 (424)
T PLN02856        325 NFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCK  404 (424)
T ss_pred             CHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEEC
Confidence            998  99999999986799999999999999999999999999999999999999999888 799999999999999999


Q ss_pred             cCCceEeeeeeeeEEeeCCC
Q 014784          399 GNGYTVGFGTCSGKIVPSTP  418 (418)
Q Consensus       399 ~~~~~~~~G~~~~~v~~~~~  418 (418)
                      ++|.+||||+|+++|+||++
T Consensus       405 ~~g~~igfG~~~g~v~pa~~  424 (424)
T PLN02856        405 GDGYRVGFGTCSGKVLPALP  424 (424)
T ss_pred             CCCccEeeeeeeeEEecCCC
Confidence            99999999999999999974

>TIGR01266 fum_ac_acetase fumarylacetoacetase	Back alignment and domain information

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK12764 hypothetical protein; Provisional	Back alignment and domain information

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I	Back alignment and domain information

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit	Back alignment and domain information

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3	Back alignment and domain information

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	Back alignment and domain information

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	Back alignment and domain information

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase	Back alignment and domain information

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function	Back alignment and domain information

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		418
1hyo_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-135
1qco_A		423	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-135
1qqj_A		419	Crystal Structure Of Mouse Fumarylacetoacetate Hydr		1e-135
1qcn_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-130

>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421

Back alignment and structure

Iteration: 1

Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/416 (56%), Positives = 286/416 (68%), Gaps = 6/416 (1%) Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63 SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61 Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123 F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP Sbjct: 62 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121 Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183 IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQ 181 Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243 + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDI Sbjct: 182 MRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDI 241 Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303 Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L Sbjct: 242 QQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINL 301 Query: 304 EVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 361 V +K G + + RSNFK YWT+ QQL HH++NGCNLR GDLL +GTISG +PES Sbjct: 302 SVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 361 Query: 362 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+ Sbjct: 362 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417

PyMOL of 1hyo

>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423

Back alignment and structure

>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419

Back alignment and structure

>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		418
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-180
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	6e-34
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	3e-18
1wzo_A		246	HPCE; structural genomics, riken structural genomi	2e-14
3rr6_A		265	Putative uncharacterized protein; structural genom	2e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	5e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	1e-12
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	7e-14
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	4e-13
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	7e-13
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	2e-12
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	3e-12
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	2e-10

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421	Back alignment and structure

 Score =  507 bits (1306), Expect = e-180
 Identities = 234/418 (55%), Positives = 288/418 (68%), Gaps = 4/418 (0%)

Query: 2   ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
              SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I         + K
Sbjct: 1   GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59

Query: 62  DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
               F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M L
Sbjct: 60  HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119

Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPR 181
           P  IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP 
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPM 179

Query: 182 GQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241
           GQ  P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSAR
Sbjct: 180 GQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR 239

Query: 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 301
           DIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI
Sbjct: 240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDI 299

Query: 302 SLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 359
           +L V +K  G   +  + RSNFK  YWT+ QQL HH++NGCNLR GDLL +GTISG +PE
Sbjct: 300 NLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPE 359

Query: 360 SLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
           S G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 360 SFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		418
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	100.0
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	100.0
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A		288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A		265	Putative uncharacterized protein; structural genom	100.0
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	100.0
1wzo_A		246	HPCE; structural genomics, riken structural genomi	100.0
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	100.0
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	100.0
2wqt_A		270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	100.0

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A	Back alignment and structure

Probab=100.00  E-value=9.5e-89  Score=697.24  Aligned_cols=413  Identities=57%  Similarity=1.052  Sum_probs=359.7

Q ss_pred             cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhCCchh
Q 014784            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA   81 (418)
Q Consensus         3 ~~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~-~~~~~~~~~~~l~~fl~~g~~~   81 (418)
                      .+|||+++.+|+|+|+|||||+|++.+++.+|+|+++|++|+||+++..  .+..+. ....++|.+++|++||++|...
T Consensus         2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~   79 (421)
T 1hyo_A            2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA   79 (421)
T ss_dssp             -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred             CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence            4899999999999999999999998777889999999999999987754  222110 0123456778999999999989


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCCcccCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCe
Q 014784           82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPI  161 (418)
Q Consensus        82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~  161 (418)
                      |.++|+.++++++.....++++..+.....+++++|+|++|+.+++|+|||+|++|++|+++.|++++++.+|+|++.|+
T Consensus        80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv  159 (421)
T 1hyo_A           80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPV  159 (421)
T ss_dssp             HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCC
T ss_pred             HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcCCCCE
Confidence            99999999987764433233332222345689999999999999999999999999999998777666667899999999


Q ss_pred             eeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchh
Q 014784          162 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR  241 (418)
Q Consensus       162 ~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaR  241 (418)
                      +|+|++++++++|++|.+|.++.++.....|.+.+++++|||+||||||||++++|++|++++|++||+|||++||||+|
T Consensus       160 ~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaR  239 (421)
T 1hyo_A          160 GYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR  239 (421)
T ss_dssp             EEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEH
T ss_pred             EEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHH
Confidence            99999999999999999998765433333466667899999999999999997778999999999999999999999999


Q ss_pred             hHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEec
Q 014784          242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS  321 (418)
Q Consensus       242 D~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~  321 (418)
                      |+|.|++.+++|++||+|+|+|||||||+|++++++...|..++..++||.+.+++.++|+|++++|++++.+|+++|++
T Consensus       240 diQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~  319 (421)
T 1hyo_A          240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRS  319 (421)
T ss_dssp             HHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEE
T ss_pred             hhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEec
Confidence            99999998999999999999999999999999999988888999999999988777777777777665444459999999


Q ss_pred             CCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEe
Q 014784          322 NFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK  398 (418)
Q Consensus       322 ~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~  398 (418)
                      +++  +|+++|||+|++|++|+|+|||||+||||+|+++.+.||++|++++|++++++..+ +++|||+||+|++++.+.
T Consensus       320 ~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~  399 (421)
T 1hyo_A          320 NFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQ  399 (421)
T ss_dssp             ETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEE
T ss_pred             CHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEEC
Confidence            988  99999999998679999999999999999999999999999999999999999877 889999999999999887


Q ss_pred             cCCceEeeeeeeeEEeeCC
Q 014784          399 GNGYTVGFGTCSGKIVPST  417 (418)
Q Consensus       399 ~~~~~~~~G~~~~~v~~~~  417 (418)
                      ++|.+||||+|+|+|+|+.
T Consensus       400 ~~g~~igfG~~~~~V~~a~  418 (421)
T 1hyo_A          400 GDGYRVGFGQCAGKVLPAL  418 (421)
T ss_dssp             CSSCEEEEEEEEEEEECCC
T ss_pred             CCCceeeeeeeEEEEecCC
Confidence            8999999999999999985

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}	Back alignment and structure

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		418
d1hyoa2		298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-112
d1hyoa1		118	b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase,	1e-40
d1nkqa_		257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	1e-14
d1sawa_		217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	9e-06
d1gtta2		216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	0.001
d1gtta1		213	d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada	0.003

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  329 bits (844), Expect = e-112
 Identities = 178/295 (60%), Positives = 219/295 (74%), Gaps = 3/295 (1%)

Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 184
           IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP GQ 
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62

Query: 185 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 244
            P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63  RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122

Query: 245 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 304
            WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L 
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182

Query: 305 VQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 362
           V +K  G   +  + RSNFK  YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242

Query: 363 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
            +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297

PyMOL of d1hyoa2

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 118	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216	Back information, alignment and structure

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		418
d1hyoa2		298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	100.0
d1nr9a_		221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1sawa_		217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta1		213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta2		216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1hyoa1		118	Fumarylacetoacetate hydrolase, FAH, N-terminal dom	99.89
d1sv6a_		261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.63

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-75  Score=569.71  Aligned_cols=293  Identities=60%  Similarity=1.152  Sum_probs=269.4

Q ss_pred             cCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceece
Q 014784          125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL  204 (418)
Q Consensus       125 ~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~  204 (418)
                      +.+|+||||+++|++++|+.|+++.++++|+|++.|++|+|++||+++++++|.+|.+++.+..+..|.++++++||||+
T Consensus         3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~   82 (298)
T d1hyoa2           3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMEL   82 (298)
T ss_dssp             CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBE
T ss_pred             ccccceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeec
Confidence            46899999999999999998888777889999999999999999999999999999876554444456667799999999


Q ss_pred             EEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCC
Q 014784          205 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQD  284 (418)
Q Consensus       205 ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~  284 (418)
                      ||||||||++..||+|++++|++||+||||+||||+||+|..++.+++|++||+|+|++||||||++++.++....+..+
T Consensus        83 EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~d  162 (298)
T d1hyoa2          83 EMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQD  162 (298)
T ss_dssp             EEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCS
T ss_pred             eEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccchhcCcccccccccC
Confidence            99999999877799999999999999999999999999999998889999999999999999999999998887767777


Q ss_pred             CCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCC
Q 014784          285 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG  362 (418)
Q Consensus       285 ~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G  362 (418)
                      +....+++|..++.++|+|++++|+....||+.+|++|++  +|+++|+|+|++|++|||+|||||+||||+|+++++.|
T Consensus       163 p~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~G  242 (298)
T d1hyoa2         163 PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG  242 (298)
T ss_dssp             SCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCC
T ss_pred             ccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCC
Confidence            7888899998888888888888887766799999999988  99999999997689999999999999999999999999


Q ss_pred             ceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeCC
Q 014784          363 CLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  417 (418)
Q Consensus       363 ~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~  417 (418)
                      |.+|++++|++++++..+ +++|||+||+|+||++|+.+|.+||||+|+|+|+||.
T Consensus       243 d~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~  298 (298)
T d1hyoa2         243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  298 (298)
T ss_dssp             BHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             cEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence            999999999999998877 6789999999999999999999999999999999984

PyMOL of d1hyoa2

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure