Citrus Sinensis ID: 014791

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MAFHHNHLSQDLPLHHFTDQQQQQQQQPPSPPQQQHHQHQQSIETTAPNWLNSALLRSQQAQQQAAHFSDTNFLNLRTTANNNNSNNNNTASDSDASQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLKNANSENMNNASTNNKSEGVVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMMLIHV
ccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccc
cccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccEEEEEc
mafhhnhlsqdlplhhftdqqqqqqqqppsppqqqhhqhqQSIETTAPNWLNSALLRSQQAQQQAAhfsdtnflnlrttannnnsnnnntasdsdasqtpnqwlsrtsssllhrnhsdviddvtpanDSIIAAVESAdlknansenmnnastnnksegvvvesgadgvVNWQNARYKAEILSHPLYEQLLSAHVACLRiatpvdqlprIDAQLAQSQHVVSKYSalgagqglvtddKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLqsltgvspgegtgatmsdddedqvdsdanlfdgslegpdtmgfgplipteSERSLMERVRQELKHELKQGYKEKIVDIREEILRKRragklpgdttSVLKSWWqshskwpyptvspVTLLLRFLFKslplrhsmmlihv
MAFHHNHLSQDLPLHHFTDQQQQQQQQPPSPPQQQHHQHQQSIETTAPNWLNSALLRSQQAQQQAAHFSDTNFLNLRTTANNNnsnnnntasdsdasqtpNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESAdlknansenmnnastnnksegvVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGslegpdtmgfgpLIPTESERSLMERVRQELKhelkqgykekivDIREEIlrkrragklpgdttSVLKSwwqshskwpyptvSPVTLLLRFLFKslplrhsmmlihv
MAFHHNHLSQDLPLHHFTDqqqqqqqqppsppqqqhhqhqqsIETTAPNWLNSALLRSqqaqqqaaHFSDTNFLNLRttannnnsnnnntasdsdasQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLknansenmnnastnnkseGVVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSdddedqvdsdANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTlllrflfkslplrHSMMLIHV
***************************************************************************************************************************************************************VVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSL**********************************************************************YKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMML***
*************************************************WLNS****************************************************************************************************************************AEILSHPLYEQLLSAHVACLRIATPVDQLPRIDA***************************LDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQS***********************************************************************************************TTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMMLIHV
********SQDLPLHHF**************************ETTAPNWLNSALL***********FSDTNFLNLRTTANNNNSNNN***************LSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLKNANSENMNNASTNNKSEGVVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMMLIHV
********************************************TTAPNWLNSALLRSQQA****AHFSDTNFLNL**********************************************************************************************WQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSAL*AGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLT*************************************************SLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMMLIHV
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MAFHHNHLSQDLPLHHFTDQQQQQQQQPPSPPQQQHHQHQQSIETTAPNWLNSALLRSQQAQQQAAHFSDTNFLNLRTTANNNNSNNNNTASDSDASQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLKNANSENMNNASTNNKSEGVVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLRFLFKSLPLRHSMMLIHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query418 2.2.26 [Sep-21-2011]
P48000431 Homeobox protein knotted- yes no 0.870 0.844 0.700 1e-142
O04136427 Homeobox protein knotted- N/A no 0.873 0.854 0.700 1e-134
P48001393 Homeobox protein knotted- no no 0.779 0.829 0.647 1e-123
O22300426 Homeobox protein knotted- N/A no 0.822 0.807 0.606 1e-107
P48002383 Homeobox protein knotted- no no 0.782 0.853 0.536 1e-106
Q0J6N4374 Homeobox protein knotted- yes no 0.514 0.574 0.839 1e-104
Q0E3C3313 Homeobox protein knotted- yes no 0.516 0.690 0.756 6e-92
Q94LW4323 Homeobox protein knotted- yes no 0.519 0.671 0.733 2e-90
Q9FPQ8291 Homeobox protein knotted- no no 0.540 0.776 0.651 1e-83
P46606294 Homeobox protein HD1 OS=B N/A no 0.523 0.744 0.660 6e-82
>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/401 (70%), Positives = 310/401 (77%), Gaps = 37/401 (9%)

Query: 1   MAFHHNHLSQDLPLHHFTDQQQQQQQQPPSPPQQQHHQHQQSIETTAPNWLNSALLRSQQ 60
           MAFHHNHLSQDL  +HFTDQ Q    QPP PP QQ    Q   E   PNWLN+ALLRS  
Sbjct: 1   MAFHHNHLSQDLSFNHFTDQHQPPPPQPPPPPPQQQQHFQ---EAPPPNWLNTALLRSSD 57

Query: 61  AQQQAAHFSDTNFLNL-RTTANNNNSNNNNTASDSDASQTPNQWLSRTSSSLLHRNH--- 116
                   ++ NFLNL   TAN   ++++++ S + A+   NQWLSR SSS L RN+   
Sbjct: 58  --------NNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQWLSR-SSSFLQRNNNNN 108

Query: 117 ----SDVIDDVTPANDSIIAAVESADLKNANSENMNNASTNNKSEGVVVESGADGVVNWQ 172
                D IDDVT   D++I      ++K    EN N+             + ADGVV+WQ
Sbjct: 109 ASIVGDGIDDVTGGADTMI----QGEMKTGGGENKNDGGG---------ATAADGVVSWQ 155

Query: 173 NARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAG-QG 231
           NAR+KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVV+KYSALGA  QG
Sbjct: 156 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQG 215

Query: 232 LVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGT 291
           LV DDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 
Sbjct: 216 LVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGM 275

Query: 292 GATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYK 351
           GATMSDD+++QV+SDAN+FDG L   D +GFGPLIPTESERSLMERVRQELKHELKQGYK
Sbjct: 276 GATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMERVRQELKHELKQGYK 332

Query: 352 EKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
           EKIVDIREEILRKRRAGKLPGDTTSVLK+WWQSHSKWPYPT
Sbjct: 333 EKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373

Arabidopsis thaliana (taxid: 3702)
>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3 Back     alignment and function description
>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1 Back     alignment and function description
>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2 Back     alignment and function description
>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2 Back     alignment and function description
>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2 Back     alignment and function description
>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1 Back     alignment and function description
>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
356507510411 PREDICTED: homeobox protein knotted-1-li 0.808 0.822 0.655 1e-143
449455557455 PREDICTED: homeobox protein knotted-1-li 0.880 0.808 0.688 1e-141
312282373434 unnamed protein product [Thellungiella h 0.858 0.827 0.682 1e-141
15238743431 homeobox protein knotted-1-like 3 [Arabi 0.870 0.844 0.700 1e-140
79328660419 homeobox protein knotted-1-like 3 [Arabi 0.870 0.868 0.700 1e-140
111038269448 class II knotted-like homeobox protein [ 0.870 0.812 0.700 1e-140
210160856482 KNAT3-like transcription factor [Juglans 0.904 0.784 0.683 1e-139
21554222431 KNAT3 homeodomain protein [Arabidopsis t 0.870 0.844 0.698 1e-139
302398821437 HD domain class transcription factor [Ma 0.873 0.835 0.712 1e-139
336112103441 knox-like protein 3 [Arabidopsis lyrata] 0.866 0.820 0.695 1e-138
>gi|356507510|ref|XP_003522507.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information
 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/418 (65%), Positives = 305/418 (72%), Gaps = 80/418 (19%)

Query: 1   MAFHHNHLSQDLPLHHFTDQQQQQQQ---------QPPSPPQQQHHQHQQSIETTAPNWL 51
           MA+HHN   Q+LPLHHFTDQQQ   Q          P S P    HQ        APNWL
Sbjct: 1   MAYHHN--PQELPLHHFTDQQQHHNQPLVDNSLLSDPASKPASDPHQ-------PAPNWL 51

Query: 52  NSALLRSQQAQQQAAHFSDTN-----------------FLNLRTTANNNNSNNNNTASDS 94
           N+ALLR+        H++D N                 FLNL T+            SDS
Sbjct: 52  NNALLRT--------HYTDNNNNNNVNAANNNTNNGTNFLNLHTST-----------SDS 92

Query: 95  DASQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLKNANSENMNNASTNN 154
                  QWL+R    +L+RNHS+VIDDVT A DS +AA ES DLK              
Sbjct: 93  ------GQWLAR---PILNRNHSEVIDDVTGAGDSNMAAAESGDLK-------------- 129

Query: 155 KSEGVVVESGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLA 214
             +   VE G+DG++NWQNAR KAEIL+HPLYEQLLSAHVACLRIATPVDQLPRIDAQL 
Sbjct: 130 -GDAAAVEGGSDGLMNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLT 188

Query: 215 QSQHVVSKYSALGAGQGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWE 274
           QSQ+VV+KYSA G  Q +V DDKELDQF++HYVLLLCSFKEQLQQHVRVHAMEAVMACWE
Sbjct: 189 QSQNVVAKYSAFG--QAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWE 246

Query: 275 IEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSL 334
           IEQSLQSLTGVSPGEGTGATMSD++++QVDSDANLFDG+L+GPD+MGFGPLIPTE+ERSL
Sbjct: 247 IEQSLQSLTGVSPGEGTGATMSDEEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSL 306

Query: 335 MERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
           MERVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLK+WWQSHSKWPYPT
Sbjct: 307 MERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449455557|ref|XP_004145519.1| PREDICTED: homeobox protein knotted-1-like 3-like [Cucumis sativus] gi|449485171|ref|XP_004157089.1| PREDICTED: homeobox protein knotted-1-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|312282373|dbj|BAJ34052.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|15238743|ref|NP_197904.1| homeobox protein knotted-1-like 3 [Arabidopsis thaliana] gi|1346387|sp|P48000.1|KNAT3_ARATH RecName: Full=Homeobox protein knotted-1-like 3; AltName: Full=Protein KNAT3 gi|1045042|emb|CAA63130.1| KNAT3 homeobox protein [Arabidopsis thaliana] gi|4063731|gb|AAC98441.1| KNAT3 homeodomain protein [Arabidopsis thaliana] gi|332006030|gb|AED93413.1| homeobox protein knotted-1-like 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79328660|ref|NP_001031938.1| homeobox protein knotted-1-like 3 [Arabidopsis thaliana] gi|332006031|gb|AED93414.1| homeobox protein knotted-1-like 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|111038269|gb|ABH03531.1| class II knotted-like homeobox protein [Prunus persica] gi|215983122|gb|ACJ71731.1| class II knotted-like homeobox transcription factor [Prunus persica] Back     alignment and taxonomy information
>gi|210160856|gb|ACJ09316.1| KNAT3-like transcription factor [Juglans nigra] Back     alignment and taxonomy information
>gi|21554222|gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302398821|gb|ADL36705.1| HD domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|336112103|gb|AEI17370.1| knox-like protein 3 [Arabidopsis lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
TAIR|locus:2146945431 KNAT3 "KNOTTED1-like homeobox 0.791 0.767 0.675 1.9e-121
TAIR|locus:2184911393 KNAT4 "KNOTTED1-like homeobox 0.523 0.557 0.874 8.2e-110
TAIR|locus:2116632383 KNAT5 "KNOTTED1-like homeobox 0.538 0.587 0.718 1.6e-93
TAIR|locus:2015554291 KNAT7 "KNOTTED-like homeobox o 0.543 0.780 0.632 3.6e-73
TAIR|locus:2027089382 STM "SHOOT MERISTEMLESS" [Arab 0.267 0.293 0.291 1.2e-15
TAIR|locus:2128828398 KNAT1 "KNOTTED-like from Arabi 0.131 0.138 0.381 1.6e-14
TAIR|locus:2026810310 KNAT2 "KNOTTED-like from Arabi 0.126 0.170 0.377 3.5e-13
UNIPROTKB|P46609361 OSH1 "Homeobox protein knotted 0.198 0.229 0.395 5.4e-08
TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1122 (400.0 bits), Expect = 1.9e-121, Sum P(2) = 1.9e-121
 Identities = 237/351 (67%), Positives = 252/351 (71%)

Query:    44 ETTAPNWLNSALLRSXXXXXXXXHFSDTNFLNLRXXXXXXXXXXXXXX-XXXXXXQTPNQ 102
             E   PNWLN+ALLRS          ++ NFLNL                         NQ
Sbjct:    41 EAPPPNWLNTALLRSSD--------NNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQ 92

Query:   103 WLSRTSSSLLHRNHSDVIDDVTPANDSIIAAVESADLXXXXXXXXXXXXXXXXXXGVVVE 162
             WLSR SSS L RN+++   + +   D I      AD                   G    
Sbjct:    93 WLSR-SSSFLQRNNNN---NASIVGDGIDDVTGGADTMIQGEMKTGGGENKNDGGGA--- 145

Query:   163 SGADGVVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSK 222
             + ADGVV+WQNAR+KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVV+K
Sbjct:   146 TAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAK 205

Query:   223 YSALGAG-QGLVTDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQS 281
             YSALGA  QGLV DDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQS
Sbjct:   206 YSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQS 265

Query:   282 LTGVSPGEGTGATMSXXXXXXXXXXANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQE 341
             LTGVSPGEG GATMS          AN+FDG L   D +GFGPLIPTESERSLMERVRQE
Sbjct:   266 LTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMERVRQE 322

Query:   342 LKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
             LKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLK+WWQSHSKWPYPT
Sbjct:   323 LKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373
GO:0003677 "DNA binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0009722 "detection of cytokinin stimulus" evidence=IEP
GO:0071345 "cellular response to cytokine stimulus" evidence=IDA
GO:0048513 "organ development" evidence=RCA
GO:0009416 "response to light stimulus" evidence=IEP
TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04136KNAP3_MALDONo assigned EC number0.70090.87320.8548N/Ano
Q0J6N4KNOSD_ORYSJNo assigned EC number0.83940.51430.5748yesno
Q94LW4KNOSB_ORYSJNo assigned EC number0.73300.51910.6718yesno
Q0E3C3KNOS2_ORYSJNo assigned EC number0.75680.51670.6900yesno
O22300LET12_SOLLCNo assigned EC number0.60600.82290.8075N/Ano
P48000KNAT3_ARATHNo assigned EC number0.70070.87080.8445yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
pfam0379152 pfam03791, KNOX2, KNOX2 domain 6e-19
pfam0379045 pfam03790, KNOX1, KNOX1 domain 6e-17
pfam0378922 pfam03789, ELK, ELK domain 4e-05
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-04
>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain Back     alignment and domain information 
 Score = 79.6 bits (197), Expect = 6e-19
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 235 DDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 284
            D ELDQFM  Y  +L  +KE+L +       EA+    EIE  LQ+L G
Sbjct: 7   ADPELDQFMEAYCDVLVKYKEELSRPFD----EAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52
>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain Back     alignment and domain information
>gnl|CDD|217729 pfam03789, ELK, ELK domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 418
KOG0773342 consensus Transcription factor MEIS1 and related H 99.97
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 99.91
PF0379045 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN 99.84
KOG0774334 consensus Transcription factor PBX and related HOX 99.7
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.24
PF0378922 ELK: ELK domain ; InterPro: IPR005539 This domain 98.53
cd0008659 homeodomain Homeodomain; DNA binding domains invol 98.33
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 98.16
KOG0775304 consensus Transcription factor SIX and related HOX 97.68
PF0004657 Homeobox: Homeobox domain not present here.; Inter 97.59
KOG0773 342 consensus Transcription factor MEIS1 and related H 97.32
PF03792191 PBC: PBC domain; InterPro: IPR005542 Pbx proteins 94.93
KOG2252558 consensus CCAAT displacement protein and related h 88.39
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information 
Probab=99.97  E-value=3.2e-32  Score=264.93  Aligned_cols=242  Identities=19%  Similarity=0.197  Sum_probs=176.0

Q ss_pred             hhhhHHHHHHHhhCCChHHHHHHHHcchhccCCCcchhhHHHHHHhhhhhhhhhhccCCC-C--CCCCCChHHHHHHHHH
Q 014791          170 NWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGAG-Q--GLVTDDKELDQFMTHY  246 (418)
Q Consensus       170 ~~e~e~iKAkI~sHPlYp~LL~AyIdCqKVGAPpEvl~rLda~l~q~q~~~~k~sa~~~~-~--~~ig~DPELDQFMEaY  246 (418)
                      .+....+|+.+.+||+|..++.||++|++++.|.+.+.++++.+........++...... .  ..-+.+++|+.||..|
T Consensus        46 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k~  125 (342)
T KOG0773|consen   46 MVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSKL  125 (342)
T ss_pred             ccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchHH
Confidence            455667899999999999999999999999999999988777654433332222211110 0  1235889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCchhhhccCCCccCCCCC-CCCCCCCCCCC
Q 014791          247 VLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSL-EGPDTMGFGPL  325 (418)
Q Consensus       247 C~mL~KYKEELsrP~~~~a~EA~~F~~~IEsQL~sLt~~s~~egtga~~SddEdd~~~Sd~~~~dg~~-e~~D~~gf~pl  325 (418)
                      +.+|..++..|+..+.  -+++++++++|+..+...++..+....+.+...+.++...    ...+.. -..+.+|+.+.
T Consensus       126 ~~~ll~~~~~~~~~~~--~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~q~~~~~~~~~~~~~  199 (342)
T KOG0773|consen  126 EKILLAVITKLTLTQV--STWFANARRRLKKELKMTWGPTPLALDGISRHFSDLEKEK----AIGGQLSSSEELLGESEQ  199 (342)
T ss_pred             HHHHHHHHHHhhhhhH--HHHHHHHHHHHHhccCCCCCCccccccchhhhhhhhhhcc----cccccccccccccccccc
Confidence            9999999999999863  3899999999999999998766554443322221111100    000000 00111122221


Q ss_pred             CCchhhhhhh--HHHHHHHHHHHhhhhhhhhhhHHHHHHHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH--
Q 014791          326 IPTESERSLM--ERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR--  401 (418)
Q Consensus       326 ~p~e~erslm--er~DqELK~~LlrKYsg~l~~LkqEf~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~--  401 (418)
                      ...+.+...+  .+.++.++..|.+.++.++.....+..++|++|+||++++++|+.||+.|+.||||++.+|.+|+.  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T  279 (342)
T KOG0773|consen  200 DDSEDESGPSGSEPPLRLAKQSLRQQRSAYDGSGGKKQSKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT  279 (342)
T ss_pred             cccccccCcccccCCcccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc
Confidence            1111121111  344678899999999989888888888999999999999999999999999999999999999998  


Q ss_pred             --------Hhhccccccccccccc
Q 014791          402 --------FLFKSLPLRHSMMLIH  417 (418)
Q Consensus       402 --------NWFiNaRrR~~~~li~  417 (418)
                              |||||||+|+|+++|.
T Consensus       280 GLs~~Qv~NWFINaR~R~w~p~~~  303 (342)
T KOG0773|consen  280 GLSRPQVSNWFINARVRLWKPMIE  303 (342)
T ss_pred             CCCcccCCchhhhcccccCCchHH
Confidence                    9999999999999873

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 7e-09
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 2e-08
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 2e-08
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 4e-08
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 6e-08
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 1e-07
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 2e-07
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 7e-07
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 9e-07
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
            K + G LP   T+V++SW   H   PYPT
Sbjct: 7   GKNKRGVLPKHATNVMRSWLFQHIGHPYPT 36
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.41
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.36
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.33
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.17
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.05
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 98.98
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 98.93
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 98.9
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 98.89
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 98.85
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 98.17
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 98.04
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 97.99
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 97.89
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 97.65
1wh5_A80 ZF-HD homeobox family protein; structural genomics 97.57
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 97.5
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 97.44
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 97.39
3d1n_I151 POU domain, class 6, transcription factor 1; prote 97.35
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 97.33
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 97.32
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 97.31
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 97.31
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 97.29
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 97.29
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 97.29
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 97.27
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 97.23
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 97.15
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 97.12
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 97.08
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 97.06
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 97.0
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 96.98
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 96.93
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 96.9
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 96.89
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 96.88
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 96.85
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 96.82
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 96.81
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 96.8
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 96.77
3a02_A60 Homeobox protein aristaless; homeodomain, developm 96.76
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 96.65
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 96.64
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 96.62
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 96.61
3a01_A93 Homeodomain-containing protein; homeodomain, prote 96.6
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 96.5
1uhs_A72 HOP, homeodomain only protein; structural genomics 96.47
1e3o_C160 Octamer-binding transcription factor 1; transcript 96.37
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 96.36
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 96.36
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 96.26
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 96.25
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 96.25
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 96.18
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 96.09
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 96.09
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 96.07
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 95.94
2xsd_C164 POU domain, class 3, transcription factor 1; trans 95.94
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 95.88
2e19_A64 Transcription factor 8; homeobox domain, structura 95.73
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 95.65
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 95.51
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 95.2
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 94.26
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 93.32
1lfb_A99 Liver transcription factor (LFB1); transcription r 93.22
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 92.36
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 90.9
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 90.8
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 85.78
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 80.75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
Probab=99.41  E-value=3.3e-14  Score=117.58  Aligned_cols=48  Identities=23%  Similarity=0.389  Sum_probs=45.9

Q ss_pred             CCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccccc
Q 014791          369 KLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLI  416 (418)
Q Consensus       369 kLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li  416 (418)
                      -||++++++|++||..|..+||||++||..||+          |||+|+|+|+++++|
T Consensus        11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~   68 (89)
T 2lk2_A           11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML   68 (89)
T ss_dssp             CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence            589999999999999999999999999999998          899999999998875
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 418
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 2e-05
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 0.004
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVS 394
           K + G LP   T+V++SW   H   PYPT  
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTED 33
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.53
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.35
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.24
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 98.05
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 97.86
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 97.81
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 97.81
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 97.73
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 97.7
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 97.53
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 97.5
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 97.46
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 97.45
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 97.32
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 97.25
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 97.18
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 97.13
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 97.1
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 97.07
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 97.03
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 96.98
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 96.95
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 96.87
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 96.8
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 96.71
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 96.69
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 96.69
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 96.59
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 96.22
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 95.86
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 95.68
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 95.38
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=116.01  Aligned_cols=50  Identities=30%  Similarity=0.457  Sum_probs=47.5

Q ss_pred             HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791          363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS  412 (418)
Q Consensus       363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~  412 (418)
                      .||||++||++++.+|++||..|..+||||.+||..||.          |||+|+|+|++
T Consensus         2 ~krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL   61 (62)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence            367899999999999999999999999999999999998          89999999985
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure