Citrus Sinensis ID: 014838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MNGVVRVDPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSSSSEKSRSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHccccccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEEEcccccccccccEEEEEcccccccccEEEEccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEcHHHHHHHHcccccccccccccccccEEEEEccccEEEccccEEEEccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcEEEcccccccccccEEEEEEEEcccccccEEEEEccEcccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHcccHcEEEEEcccccEEEEEcHHHHHHHHcccccccccccccccccEEEEEEEccEEEccccEEEEEEEEEEEEEccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mngvvrvdppsrvfpepidhfdrlpDSVLLLVFNKigdvkalgrccvvsrrfhslvpqvdnvVVRVDCvisdddsssssseksrspfsnlFRYVFGGIVKPFQALGQLlgakrtqfhhnnqhlttsghapaafcassssgsgttlsvgsssaddeemdqggvthhsptqVLKNFNEIRFLrielpsgelgiddgVLLKWRADFGSTLDNCVILGAASVMNNVLAKALdigatdlpcvssnnnnsnnnntnvngatddngsipesfytnggLKLRVVWTISSLIAASARHYLLQPIIAEHKTldslvltdadgqgvlCMNREQLEElrvkplsassaskrtlVPALNMrlwyapylelpdgvvlkgatlvairpseqsaskkevsdgswvgsafeepyGTAAKMLVKRRTYCLEMNSF
Flexible Loop (DISEMBL)
mngvvrvdppsrvfpepidhfdrLPDSVLLLVFNKIGDVKALGRCCVVSrrfhslvpqvdnvvvRVDCVisdddsssssseksrspfsNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQggvthhsptqvlKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEelrvkplsassaskrtlvPALNMRLWYAPYLELPDGVVLKGATLVAirpseqsaskkevsdgswvgsafeepygtaAKMLVKRRTYCLEMNSF
Low Complexity Region (SEG)
MNGVVRVDPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQvdnvvvrvdcvisdddsssssseksrspfsNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCAssssgsgttlsvgsssADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCvssnnnnsnnnntnvnGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Disordered region (IsUnstruct)
****************PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVI*****************SNLFRYVFGGIVKPFQALGQLLGAKRTQFHH**************************************************QVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCV**************************SFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQL****************TLVPALNMRLWYAPYLELPDGVVLKGATLVAI****************WVGSAFEEPYGTAAKMLVKRRTYCL*****
Disordered Region (DISOPRED)
******************DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDC********************NLFRYVFGGIVKPFQALGQLLGA******************************************************SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASV******************************************IPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEE******************ALNMRLWYAPYLELPDGVVLKGATLVAIRP*************SWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Disordered Region (DISEMBL)
MNGVVRVDPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVI***************PFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFC*****************************HHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRP**************WVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Disordered Region (DISPRO)
*****************IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISD***********RSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGH***********************************HHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASV*****************************************SIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSA*SASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSA******DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGVVRVDPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSSSSEKSRSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q9FNK5	395	F-box protein At5g46170 O	yes	no	0.913	0.964	0.724	1e-154
O49508	380	F-box protein At4g18380 O	no	no	0.865	0.95	0.690	1e-145
Q9C534	379	F-box protein At1g30200 O	no	no	0.863	0.949	0.614	1e-137
Q9LM18	314	F-box protein At1g22220 O	no	no	0.731	0.971	0.317	8e-48
Q9C9S2	334	F-box protein At1g78100 O	no	no	0.784	0.979	0.307	1e-47

>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1

 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 307/424 (72%), Positives = 328/424 (77%), Gaps = 43/424 (10%)

Query: 4   VVRVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58
           + R DPPSR+ PEP     IDHFD LPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQ
Sbjct: 5   IPRSDPPSRIHPEPPQTLEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 64

Query: 59  VDNVVVRVDCVISDDDSSSSSSEKSRSPFSN-----LFRYVFGGIVKPFQALGQLLGAKR 113
           VDNVVVRVDCVISDDDSSS SS KSRS  S      +FR V GGIVKP QALGQ LG KR
Sbjct: 65  VDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKR 124

Query: 114 TQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKN 173
           +                    +   SGS ++    S   D  E++QGGVTHHSPTQVLKN
Sbjct: 125 SSS------------------SCGGSGSSSSSLSISGDDDGGEIEQGGVTHHSPTQVLKN 166

Query: 174 FNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATD 233
           F+EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVILGA+SV+              
Sbjct: 167 FDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVI------------PP 214

Query: 234 LPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ 293
            P   S   ++          +DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ
Sbjct: 215 NPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQ 274

Query: 294 PIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAP 353
           PIIAEHKTLDSLVLTD+DGQGVLCMNR+QLEELRVKPL+ASSASKRTLVPALNMRLWYAP
Sbjct: 275 PIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASSASKRTLVPALNMRLWYAP 334

Query: 354 YLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLE 413
            LELPDG VLKGATLVAIRPSE   SKKEVSD SWV SAFEEPY TAAKMLVKRRTYCLE
Sbjct: 335 TLELPDGTVLKGATLVAIRPSE---SKKEVSDISWVSSAFEEPYETAAKMLVKRRTYCLE 391

Query: 414 MNSF 417
           MNSF
Sbjct: 392 MNSF 395

Arabidopsis thaliana (taxid: 3702)

>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1

 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/414 (69%), Positives = 315/414 (76%), Gaps = 53/414 (12%)

Query: 11  SRVFPEP--IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDC 68
           SR+ PEP  IDHFD LPDS+LLL+FN IGDVKALGRC VVS+RFHSL+PQV+NV VRVDC
Sbjct: 13  SRIHPEPQEIDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDC 72

Query: 69  VISDDDSSSSSSEKSRSPFSN-----LFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHL 123
           VISDDDSSS  S+K RS  +      +FR VF    KP QALGQ L  KR+         
Sbjct: 73  VISDDDSSSLLSDKPRSASAASPFSAIFRLVF----KPLQALGQFL--KRSG-------- 118

Query: 124 TTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIE 183
                      +SS     +  S+  S  DD E++QGGVTHHSPTQVLKNF+EI+FL+IE
Sbjct: 119 -----------SSSLPSGSSPSSLLISGGDDGEIEQGGVTHHSPTQVLKNFDEIKFLKIE 167

Query: 184 LPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNN 243
           LPSGELGIDDGVLLKWRA+FGSTL+NCVILGA+SV                  +   N++
Sbjct: 168 LPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV------------------IPPTNSD 209

Query: 244 SNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD 303
               ++    A +DNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD
Sbjct: 210 KTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLD 269

Query: 304 SLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVL 363
           SLVLTD DGQGVLCMNR+QLEELRVKPLSASSASKRTLVPALNMRLWYAP LELPDG VL
Sbjct: 270 SLVLTDVDGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPSLELPDGTVL 329

Query: 364 KGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
           KGATLVAIRPSE   SKKEV D SWV SAF+EPYG AAKMLVKRRTYCLEMNSF
Sbjct: 330 KGATLVAIRPSE---SKKEVCDVSWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/436 (61%), Positives = 305/436 (69%), Gaps = 76/436 (17%)

Query: 1   MNGVVRVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSL 55
           M+ ++R DP SR+ PEP      DHFD LPDS+LLL+F+K+ DVK LGRCC+VSRRFHSL
Sbjct: 1   MSYLLRSDPVSRIHPEPQSLTSFDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSL 60

Query: 56  VPQVDNVVVRVDCVI--------------SDDDSSSSSSEKSRSPFSNLFRYVFGGIVKP 101
           VP V+NV+VRVDCVI              S + +S S +  +   FS LFR VF  I KP
Sbjct: 61  VPFVENVLVRVDCVISDDDSSSSDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKP 120

Query: 102 FQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGG 161
           FQ LGQ+LG KR+    +      +                               D+ G
Sbjct: 121 FQMLGQILGPKRSSSSFDASFSAIN-------------------------------DEIG 149

Query: 162 VTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNN 221
           VTHHSPTQVLKNF EIRFL+IELP+GELGI+DG+LLKWRADFGSTLDNC+ILGA+SV+  
Sbjct: 150 VTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGASSVIQ- 208

Query: 222 VLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISS 281
                                 SN+   + N   +DNG+IPESFYTNGGLKLRVVWTISS
Sbjct: 209 ----------------------SNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISS 246

Query: 282 LIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTL 341
           LIAASARHYLLQPII EHK+LD LVL+DADGQGVLCMNREQLEELRV PLSASSASKRTL
Sbjct: 247 LIAASARHYLLQPIINEHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASSASKRTL 306

Query: 342 VPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAA 401
           VPALNMRLWYAP L+LPDG VLKGATLVAIRPSE   SKKEV D SW+  AFEEP+GT A
Sbjct: 307 VPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE---SKKEVCDASWLSDAFEEPFGTVA 363

Query: 402 KMLVKRRTYCLEMNSF 417
           KML+KRRTYCLEMNSF
Sbjct: 364 KMLIKRRTYCLEMNSF 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1

 Score =  191 bits (485), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/409 (31%), Positives = 204/409 (49%), Gaps = 104/409 (25%)

Query: 18  IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSS 77
           +D FD LPD +++ + NK+GDVK L RC  +S+RF+SLVPQ +++ +R+D  +SD     
Sbjct: 1   MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVSD----- 55

Query: 78  SSSEKSRSPF-SNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCAS 136
                  SP  +++FR +F G+V              +      + +T +  +P+     
Sbjct: 56  -------SPVVTSIFRSLFNGLV--------------SLLSKPAKPITITTLSPSL---- 90

Query: 137 SSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVL 196
                                         P ++L  F+ IR L +ELP G++ ++ G  
Sbjct: 91  ------------------------------PFKILSRFDRIRNLDVELPGGDVKLEKGAA 120

Query: 197 LKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATD 256
           +KW+A+FG TL +CVI+   S            G    P               V G +D
Sbjct: 121 VKWKAEFGKTLKSCVIVAFRSA-----------GTVSSPVA-------------VEGESD 156

Query: 257 DNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVL 316
                   F T  GLK RVVWTIS+L+AAS+RHYL++ ++ EH+ ++SLV+ D + +G +
Sbjct: 157 AE------FVT--GLKTRVVWTISALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTV 208

Query: 317 CMNREQLEEL-----RVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAI 371
            MN E L+EL     RV+       +KR++VP++ M + +AP L+L  G+ L+ ATLV +
Sbjct: 209 VMNEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIV 268

Query: 372 RPSE---QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
           RPS    +     E++  ++VG      YG A   L+K +   LEMNSF
Sbjct: 269 RPSGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCKKNALEMNSF 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 201/407 (49%), Gaps = 80/407 (19%)

Query: 18  IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSS 77
           +D FD +PD V++ + N++GDVK L RC  VS+RF+SL  Q +++++++D ++   +S S
Sbjct: 1   MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDS 60

Query: 78  SSSEKSRSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASS 137
                  SP ++ FR +F  I                            G  P  F   +
Sbjct: 61  EID----SPIASFFRSLFKSI---------------------------HGLLPPIFSKPA 89

Query: 138 SSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLL 197
           +S    T S                   +P Q+L  F  IR L +EL  G++ ++ G  +
Sbjct: 90  NSDEILTRS-----------------PKTPAQILSGFERIRNLEVELYGGDVKLEKGAAV 132

Query: 198 KWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDD 257
           KW+A+FG TL +CVI+   S   N  A      AT+   V             V+G  + 
Sbjct: 133 KWKAEFGKTLKSCVIVAFRSATVNTSA------ATEAAAV-------------VDGVVES 173

Query: 258 NGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLC 317
           +           GLK RVVWTIS+L+AAS RHYL++ ++ +HK ++ L++ D+DG+G + 
Sbjct: 174 DSEFV------CGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVV 227

Query: 318 MNREQLEELRVKPL-----SASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIR 372
           M+   ++E R   +      +    +RT+VP++ M + +AP L L  G+ L+ ATLV +R
Sbjct: 228 MDAAGMKEYRETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVR 287

Query: 373 PSEQSASKKEVS--DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
           P+  ++   +V     ++ G   +  YG A   L+KRR   LEMNSF
Sbjct: 288 PTGVASDDNDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,389,019
Number of Sequences: 539616
Number of extensions: 6542622
Number of successful extensions: 87627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 37031
Number of HSP's gapped (non-prelim): 38448
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
225443916	399	PREDICTED: F-box protein At5g46170 isofo	0.916	0.957	0.730	1e-172
147818878	399	hypothetical protein VITISV_042179 [Viti	0.916	0.957	0.728	1e-172
297740746	398	unnamed protein product [Vitis vinifera]	0.841	0.881	0.703	1e-163
255557231	414	conserved hypothetical protein [Ricinus	0.937	0.944	0.728	1e-162
449439183	406	PREDICTED: F-box protein At5g46170-like	0.920	0.945	0.710	1e-162
224076904	398	f-box family protein [Populus trichocarp	0.896	0.939	0.714	1e-157
372477775	403	F-box family protein [Malus x domestica]	0.901	0.933	0.737	1e-157
356555516	385	PREDICTED: F-box protein At5g46170-like	0.901	0.976	0.741	1e-154
297791073	392	F-box family protein [Arabidopsis lyrata	0.901	0.959	0.730	1e-154
449433627	407	PREDICTED: F-box protein At5g46170-like	0.913	0.936	0.702	1e-153

>gi|225443916|ref|XP_002278480.1| PREDICTED: F-box protein At5g46170 isoform 1 [Vitis vinifera] gi|359483890|ref|XP_003633032.1| PREDICTED: F-box protein At5g46170 isoform 2 [Vitis vinifera]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 317/434 (73%), Positives = 345/434 (79%), Gaps = 52/434 (11%)

Query: 1   MNGVVRVDPPSRVFPEP-------------IDHFDRLPDSVLLLVFNKIGDVKALGRCCV 47
           M   +R DP +R++PEP             IDHFDRLPDS+LLLVFNKIGDVKALGRCCV
Sbjct: 1   MASSMRPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCV 60

Query: 48  VSRRFHSLVPQVDNVVVRVDCVISDDDSSSS--SSEKSRSPFSNLFRYVFGGIVKPFQAL 105
           VSRRFH+LVPQV+NVVVRVDCVISDD+SSS+  S EKSR PFS+LFR VFGGIVKP QAL
Sbjct: 61  VSRRFHTLVPQVENVVVRVDCVISDDESSSAAGSLEKSRGPFSHLFRLVFGGIVKPLQAL 120

Query: 106 GQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQ--GGVT 163
           GQ LG KR                       S+  + ++L+VG  S +D ++D   GGVT
Sbjct: 121 GQFLGPKR-----------------------SAPTTSSSLAVGGGSEEDGDVDHQTGGVT 157

Query: 164 HHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVL 223
           HHSPTQVLKNFNEIRFLRIELPSGELGI+DGVLLKWRADFGSTLDNCVILGAASV+    
Sbjct: 158 HHSPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVI---- 213

Query: 224 AKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLI 283
                      P   S   +S N+   V+   DDNGSIPESFYTNGGLKLRVVWTISSLI
Sbjct: 214 --------CPGPTKGSGVQDSGNDAFCVSNGGDDNGSIPESFYTNGGLKLRVVWTISSLI 265

Query: 284 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVP 343
           AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNR+QLEELRVKPLSASSASKRTLVP
Sbjct: 266 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVP 325

Query: 344 ALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKM 403
           ALNMRLWYAP+LELPDG+VLKGATLVAIRPSEQS +KKEVSDGSWV +AFEEPYGTAAKM
Sbjct: 326 ALNMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKM 385

Query: 404 LVKRRTYCLEMNSF 417
           LVKRRTYCLEMNSF
Sbjct: 386 LVKRRTYCLEMNSF 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818878|emb|CAN73778.1| hypothetical protein VITISV_042179 [Vitis vinifera]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 316/434 (72%), Positives = 344/434 (79%), Gaps = 52/434 (11%)

Query: 1   MNGVVRVDPPSRVFPEP-------------IDHFDRLPDSVLLLVFNKIGDVKALGRCCV 47
           M   +R DP +R++PEP             IDHFDRLPDS+LLLVFNKIGDVKALGRCCV
Sbjct: 1   MASSMRPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCV 60

Query: 48  VSRRFHSLVPQVDNVVVRVDCVISDDDSSSS--SSEKSRSPFSNLFRYVFGGIVKPFQAL 105
           VSRRFH+LVPQV+NVVVRVDCVISDD+SSS+  S EKSR PFS+LFR VFGGIVKP QAL
Sbjct: 61  VSRRFHTLVPQVENVVVRVDCVISDDESSSAAGSLEKSRGPFSHLFRLVFGGIVKPLQAL 120

Query: 106 GQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQ--GGVT 163
           GQ LG KR                       S+  + ++L+VG  S +D ++D   GGVT
Sbjct: 121 GQFLGPKR-----------------------SAPTTSSSLAVGGGSEEDGDVDHQTGGVT 157

Query: 164 HHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVL 223
           HHSPTQVLKNFNEIRFLRIELPSGELGI+DGVLLKWRADFGSTLDNCVILGAASV+    
Sbjct: 158 HHSPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVI---- 213

Query: 224 AKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLI 283
                      P   S   +S  +   V+   DDNGSIPESFYTNGGLKLRVVWTISSLI
Sbjct: 214 --------CPGPTKGSGVQDSGXDAFCVSNGGDDNGSIPESFYTNGGLKLRVVWTISSLI 265

Query: 284 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVP 343
           AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNR+QLEELRVKPLSASSASKRTLVP
Sbjct: 266 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVP 325

Query: 344 ALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKM 403
           ALNMRLWYAP+LELPDG+VLKGATLVAIRPSEQS +KKEVSDGSWV +AFEEPYGTAAKM
Sbjct: 326 ALNMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKM 385

Query: 404 LVKRRTYCLEMNSF 417
           LVKRRTYCLEMNSF
Sbjct: 386 LVKRRTYCLEMNSF 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740746|emb|CBI30928.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 304/432 (70%), Positives = 324/432 (75%), Gaps = 81/432 (18%)

Query: 1   MNGVVRVDPPSRVFPEP-------------IDHFDRLPDSVLLLVFNKIGDVKALGRCCV 47
           M   +R DP +R++PEP             IDHFDRLPDS+LLLVFNKIGDVKALGRCCV
Sbjct: 33  MASSMRPDPSTRIWPEPQNSPPPVMMMAEAIDHFDRLPDSLLLLVFNKIGDVKALGRCCV 92

Query: 48  VSRRFHSLVPQVDNVVVRVDCVISDDDSSSS--SSEKSRSPFSNLFRYVFGGIVKPFQAL 105
           VSRRFH+LVPQV+NVVVRVDCVISDD+SSS+  S EKSR PFS+LFR VFGGIVKP QAL
Sbjct: 93  VSRRFHTLVPQVENVVVRVDCVISDDESSSAAGSLEKSRGPFSHLFRLVFGGIVKPLQAL 152

Query: 106 GQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHH 165
           GQ L                                            D +   GGVTHH
Sbjct: 153 GQFLDG------------------------------------------DVDHQTGGVTHH 170

Query: 166 SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAK 225
           SPTQVLKNFNEIRFLRIELPSGELGI+DGVLLKWRADFGSTLDNCVILGAASV+      
Sbjct: 171 SPTQVLKNFNEIRFLRIELPSGELGIEDGVLLKWRADFGSTLDNCVILGAASVI------ 224

Query: 226 ALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAA 285
                     C      +   +N        DNGSIPESFYTNGGLKLRVVWTISSLIAA
Sbjct: 225 ----------CPGPTKGSGVQDN--------DNGSIPESFYTNGGLKLRVVWTISSLIAA 266

Query: 286 SARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPAL 345
           SARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNR+QLEELRVKPLSASSASKRTLVPAL
Sbjct: 267 SARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPAL 326

Query: 346 NMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLV 405
           NMRLWYAP+LELPDG+VLKGATLVAIRPSEQS +KKEVSDGSWV +AFEEPYGTAAKMLV
Sbjct: 327 NMRLWYAPHLELPDGIVLKGATLVAIRPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLV 386

Query: 406 KRRTYCLEMNSF 417
           KRRTYCLEMNSF
Sbjct: 387 KRRTYCLEMNSF 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557231|ref|XP_002519646.1| conserved hypothetical protein [Ricinus communis] gi|223541063|gb|EEF42619.1| conserved hypothetical protein [Ricinus communis]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 314/431 (72%), Positives = 336/431 (77%), Gaps = 40/431 (9%)

Query: 6   RVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVD 60
           R DP SR++PEP     IDHFDRLPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQVD
Sbjct: 5   RSDPASRIYPEPQSLSAIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVD 64

Query: 61  NVVVRVDCVISDDDSSSSSSEKSRSPFSN-------------LFRYVFGGIVKPFQALGQ 107
           NVVVRVDCVISDDD+S SSS        +             +FR VFGGIVKPFQALGQ
Sbjct: 65  NVVVRVDCVISDDDTSPSSSSDKSRSSGSSSSSSSSSAGFSSIFRLVFGGIVKPFQALGQ 124

Query: 108 LLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSP 167
            LG  R    +           P     +    S ++     +  D  E+DQGGVTHHSP
Sbjct: 125 FLGPTRRDMLN-----------PYPSSRNGLLSSSSSALSVGNEDDVGELDQGGVTHHSP 173

Query: 168 TQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVL-AKA 226
           TQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASV+NN   +K+
Sbjct: 174 TQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVINNAHNSKS 233

Query: 227 LDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAAS 286
             +    +P    NN NS++         DDNGSIPESFYTNGGLKLRVVWTISSLIAAS
Sbjct: 234 SHLLQETVP--DCNNGNSSSG--------DDNGSIPESFYTNGGLKLRVVWTISSLIAAS 283

Query: 287 ARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALN 346
           ARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALN
Sbjct: 284 ARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALN 343

Query: 347 MRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVK 406
           MRLWYAP LELPDG+VLKGATLVAIRPSEQS S+KEV D SWV +AFEEPYGTAAKMLVK
Sbjct: 344 MRLWYAPQLELPDGIVLKGATLVAIRPSEQSTSRKEVCDASWVSTAFEEPYGTAAKMLVK 403

Query: 407 RRTYCLEMNSF 417
           RRTYCLEMNSF
Sbjct: 404 RRTYCLEMNSF 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439183|ref|XP_004137366.1| PREDICTED: F-box protein At5g46170-like [Cucumis sativus] gi|449520084|ref|XP_004167064.1| PREDICTED: F-box protein At5g46170-like [Cucumis sativus]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 307/432 (71%), Positives = 341/432 (78%), Gaps = 48/432 (11%)

Query: 5   VRVDPPSRVFPEP-----------------IDHFDRLPDSVLLLVFNKIGDVKALGRCCV 47
           +R+D  S+++PEP                 IDHFDRLPDS+LLL+FNKIGDVKALGRCCV
Sbjct: 4   LRLDLTSKIYPEPDSLFSFNSSSISSTSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCV 63

Query: 48  VSRRFHSLVPQVDNVVVRVDCVISDDDSSSSSSE--KSRSPFSNLFRYVFGGIVKPFQAL 105
           VSRRFH LVPQV+NVVVRVDCVISDD+SSSSSS   KSR PF N+FR+VFGGIVKP QAL
Sbjct: 64  VSRRFHCLVPQVENVVVRVDCVISDDESSSSSSSSGKSRGPFFNIFRFVFGGIVKPLQAL 123

Query: 106 GQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHH 165
           GQ LG  R                       +SS S ++L+VG+   +D E+DQGGVTHH
Sbjct: 124 GQFLGQTRASS------------------TLASSSSTSSLAVGTD--EDGEIDQGGVTHH 163

Query: 166 SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAK 225
           SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGA+SV+     K
Sbjct: 164 SPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIQPGSIK 223

Query: 226 ALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAA 285
                    P ++ +N           GA+DDNGSIPESFYTNGGLKLRVVWTISSLIAA
Sbjct: 224 ---------PSIAQDNGTDGGFCMGNGGASDDNGSIPESFYTNGGLKLRVVWTISSLIAA 274

Query: 286 SARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPAL 345
           SARHYLLQPIIA+HKTLDSLVLTDADGQGVLCMN++QLEELRVKPLSASSASKRTLVPAL
Sbjct: 275 SARHYLLQPIIADHKTLDSLVLTDADGQGVLCMNKDQLEELRVKPLSASSASKRTLVPAL 334

Query: 346 NMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLV 405
           NMRLWYA +LELP+G++LKGATLVAIRPSEQSA+KK+VSD  W  +AFEEPY TAAKMLV
Sbjct: 335 NMRLWYATHLELPNGLILKGATLVAIRPSEQSAAKKDVSDCFWASTAFEEPYRTAAKMLV 394

Query: 406 KRRTYCLEMNSF 417
           KRRTYCLEMNSF
Sbjct: 395 KRRTYCLEMNSF 406

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076904|ref|XP_002305042.1| f-box family protein [Populus trichocarpa] gi|222848006|gb|EEE85553.1| f-box family protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 310/434 (71%), Positives = 332/434 (76%), Gaps = 60/434 (13%)

Query: 5   VRVDPP-SRVFPE--------------PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVS 49
           +R DPP S++ PE               IDHFDRLPDS+LL VFNKIGDVKALGRCCVVS
Sbjct: 4   LRADPPTSKIHPEAEAEATTSCFCSSSKIDHFDRLPDSLLLFVFNKIGDVKALGRCCVVS 63

Query: 50  RRFHSLVPQVDNVVVRVDCVISDDDSSSSSSEKSRSPFSNL-----FRYVFGGIVKPFQA 104
           RRFHSLVPQVDNVVVRVDCVISDDD+SSSSS       S+      FR VFGGI KPFQA
Sbjct: 64  RRFHSLVPQVDNVVVRVDCVISDDDTSSSSSSIKSHSSSSSGFSSIFRLVFGGISKPFQA 123

Query: 105 LGQLLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTH 164
           L Q+ G K                       +S +G+G +LSV +   DD E+DQ GVTH
Sbjct: 124 LSQMFGTK----------------------VNSRNGNGPSLSVAAD--DDMELDQAGVTH 159

Query: 165 HSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVM-NNVL 223
           HSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASV+ NN +
Sbjct: 160 HSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVITNNKI 219

Query: 224 AKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLI 283
           + A+                  N         DDNGSIPESFYTNGGLKLRVVWTISSLI
Sbjct: 220 SSAM---------------QQENAAAAAAADDDDNGSIPESFYTNGGLKLRVVWTISSLI 264

Query: 284 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVP 343
           AASARHYLLQPIIAEHKTLDSLVL DADGQGVLCMNREQLEELRVKPLSASSASKRTLVP
Sbjct: 265 AASARHYLLQPIIAEHKTLDSLVLADADGQGVLCMNREQLEELRVKPLSASSASKRTLVP 324

Query: 344 ALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKM 403
           ALNMRLWYAP+LELPDGVVLKGATLVAIRPSEQ+A+KK+VSD SWV + FEEPYGTAAKM
Sbjct: 325 ALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQAATKKDVSDVSWVSTTFEEPYGTAAKM 384

Query: 404 LVKRRTYCLEMNSF 417
           LVKRRTYCLEMNSF
Sbjct: 385 LVKRRTYCLEMNSF 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|372477775|gb|AEX97082.1| F-box family protein [Malus x domestica]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 312/423 (73%), Positives = 333/423 (78%), Gaps = 47/423 (11%)

Query: 11  SRVFPEPI-----DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVR 65
           S V+PEP      DHFDRLPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVR
Sbjct: 12  STVYPEPYSSVDDDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVR 71

Query: 66  VDCVISDDDSSSSSSEKS------RSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHN 119
           VDCVISDDDSS SS+  S      R+PFS LFR V GGIVKP QALGQLLG  R      
Sbjct: 72  VDCVISDDDSSPSSASSSSSSDKSRAPFSALFRLVLGGIVKPLQALGQLLGPNR------ 125

Query: 120 NQHLTTSGHAPAAFCASSSSGSGTTLSVG---SSSADDEEMDQGGVTHHSPTQVLKNFNE 176
                            S +GS + LSV    SS+ D   +DQ GVTHHSPTQVLKNFNE
Sbjct: 126 ----------------RSPNGSHSALSVDDPDSSATDSNSLDQSGVTHHSPTQVLKNFNE 169

Query: 177 IRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPC 236
           IRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGA+SV++    KA     +  P 
Sbjct: 170 IRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGASSVIHPGPTKA-----SLFPD 224

Query: 237 VSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 296
             S+   + NN       T+DNGSIP+SFYTNGGLKLRVVWTISSLIAASARHYLLQPII
Sbjct: 225 TGSDGLCATNNA----AVTEDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPII 280

Query: 297 AEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLE 356
           +EHKTLDSLVLTDADGQGVL MN +QLEELRVKPLSASSASKRTLVPALNMRLWYAP LE
Sbjct: 281 SEHKTLDSLVLTDADGQGVLHMNTDQLEELRVKPLSASSASKRTLVPALNMRLWYAPQLE 340

Query: 357 LPDGVVLKGATLVAIRPSEQS-ASKKEV-SDGSWVGSAFEEPYGTAAKMLVKRRTYCLEM 414
           LPDGVVLKGATLVAIRPSEQS  +KKEV SD SW+ +AFEEPYGTAAKMLVKRRTYCLEM
Sbjct: 341 LPDGVVLKGATLVAIRPSEQSLTAKKEVSSDLSWISTAFEEPYGTAAKMLVKRRTYCLEM 400

Query: 415 NSF 417
           NSF
Sbjct: 401 NSF 403

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555516|ref|XP_003546077.1| PREDICTED: F-box protein At5g46170-like [Glycine max]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 309/417 (74%), Positives = 332/417 (79%), Gaps = 41/417 (9%)

Query: 6   RVDPPSRVFPEP-IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVV 64
           R D   R+FPEP IDHFDRLPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQV+NVVV
Sbjct: 5   RADLECRIFPEPEIDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVV 64

Query: 65  RVDCVISDDDSSSSSSE--KSRSPFSNLFRYVFGGIVKPFQALGQLLGAKRTQFHHNNQH 122
           RVDCVISDDDSSSSS+   KSR PF NL R VFGGIVKP Q LGQ LG KR         
Sbjct: 65  RVDCVISDDDSSSSSAASDKSRGPFWNLLRLVFGGIVKPIQTLGQFLGPKRPSSSAA--- 121

Query: 123 LTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPTQVLKNFNEIRFLRI 182
                   A   A++S  S ++L+VGS    DE+ D GGVTHHSPTQVLKNFNEIR LRI
Sbjct: 122 --------ATATAATSPSSTSSLAVGS----DEDSD-GGVTHHSPTQVLKNFNEIRLLRI 168

Query: 183 ELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGATDLPCVSSNNN 242
           ELPSGELGI+DGVLLKWRADFGSTLDNCVILGA+SV +            DL   ++ N 
Sbjct: 169 ELPSGELGIEDGVLLKWRADFGSTLDNCVILGASSVFH----------PKDLTDPTTTNC 218

Query: 243 NSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTL 302
           N+N          DDNGSIP+SFYTNGGLKLRVVWTISSLIAASARHYLLQPII+EH TL
Sbjct: 219 NAN----------DDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHATL 268

Query: 303 DSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVV 362
           D+L+LTDADGQGVL MNREQLEELRVKPLSASSASKRTLVPALNMRLWYAP+LELP GVV
Sbjct: 269 DNLLLTDADGQGVLYMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPTGVV 328

Query: 363 LKGATLVAIRPSEQS--ASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
           LKGATLVAIRPSEQS   +KKE SD SWV +AFEEPY TAA MLVKRRTYCLEMNSF
Sbjct: 329 LKGATLVAIRPSEQSPNTAKKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791073|ref|XP_002863421.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297309256|gb|EFH39680.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 311/426 (73%), Positives = 331/426 (77%), Gaps = 50/426 (11%)

Query: 4   VVRVDPPSRVFPEP-----IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58
           + R DPPSR+ PEP     IDHFDRLPDS+LLLVFNKIGDVKALGRCCVVSRRFHSLVPQ
Sbjct: 5   IPRSDPPSRIHPEPPQTLEIDHFDRLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 64

Query: 59  VDNVVVRVDCVISDDDSSSSSSEKSRSPFSN-----LFRYVFGGIVKPFQALGQLLGAKR 113
           VDNVVVRVDCVISDDDSSS SS KSRS  S      +FR V GGIVKP QALGQ LG KR
Sbjct: 65  VDNVVVRVDCVISDDDSSSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKR 124

Query: 114 TQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDE--EMDQGGVTHHSPTQVL 171
           +                       S G   + S  S S DDE  E++QGGVTHHSPTQVL
Sbjct: 125 S-----------------------SCGGSGSSSSLSISGDDEGGEIEQGGVTHHSPTQVL 161

Query: 172 KNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALDIGA 231
           KNF+EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVILGA+SV+            
Sbjct: 162 KNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIQPN--------- 212

Query: 232 TDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYL 291
              P   S   +++         +DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYL
Sbjct: 213 ---PMRISQAVDTSTVVEASGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYL 269

Query: 292 LQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVPALNMRLWY 351
           LQPIIAEHKTLDSLVLTD+DGQGVLCMNREQLEELRVKPL+ASSASKRTLVPALNMRLWY
Sbjct: 270 LQPIIAEHKTLDSLVLTDSDGQGVLCMNREQLEELRVKPLAASSASKRTLVPALNMRLWY 329

Query: 352 APYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYC 411
           AP LELPDG VLKGATLVAIRPSE   SK+EVSD SWV SAFEEPY TAAKMLVKRRTYC
Sbjct: 330 APTLELPDGTVLKGATLVAIRPSE---SKREVSDISWVSSAFEEPYETAAKMLVKRRTYC 386

Query: 412 LEMNSF 417
           LEMNSF
Sbjct: 387 LEMNSF 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433627|ref|XP_004134599.1| PREDICTED: F-box protein At5g46170-like [Cucumis sativus]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 305/434 (70%), Positives = 337/434 (77%), Gaps = 53/434 (12%)

Query: 5   VRVDPPSRVFP--------------EPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSR 50
           +R DPP+R+F                  DHFDRLPDS+LLL+FN+IGDVKALGRCC VSR
Sbjct: 6   LRPDPPARIFSIQDGVFAQTYSRCNYSDDHFDRLPDSLLLLIFNRIGDVKALGRCCAVSR 65

Query: 51  RFHSLVPQVDNVVVRVDCVISDDDSSSSSSEKSRSP--FSNLFRYVFGGIVKPFQALGQL 108
           RFHS+V QVDNVVVRVDCVISDDD SS+SS   +S   FSNLFR V GGIVKP QALGQ 
Sbjct: 66  RFHSIVSQVDNVVVRVDCVISDDDFSSASSSSDKSRSGFSNLFRMVLGGIVKPLQALGQF 125

Query: 109 LGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTTLSVGSSSADDEEMDQGGVTHHSPT 168
           LG KR                     ++SSS S ++L+VG    +D E  Q GVTHHSPT
Sbjct: 126 LGPKRVTSSGLG--------------SASSSLSTSSLAVGRE--EDGESGQSGVTHHSPT 169

Query: 169 QVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVMNNVLAKALD 228
           QVLKNFNEIRFLRIELPSGELGIDDG+LLKWRADFGSTLDNCVILGAASV++        
Sbjct: 170 QVLKNFNEIRFLRIELPSGELGIDDGILLKWRADFGSTLDNCVILGAASVIH-------- 221

Query: 229 IGATDLPCVSSNNNNSNNNNTNV----NG-ATDDNGSIPESFYTNGGLKLRVVWTISSLI 283
                   V S N +   N T+     NG A DD+GSIPESFYTNGGLKLRVVWTISSLI
Sbjct: 222 --------VGSFNKHVQENGTDGFCSGNGPAADDSGSIPESFYTNGGLKLRVVWTISSLI 273

Query: 284 AASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLSASSASKRTLVP 343
           AASARHYLLQPIIAEHKTLD+LVLTDADGQG+LCMN++QLEELRVKPLSAS+ASKRTLVP
Sbjct: 274 AASARHYLLQPIIAEHKTLDNLVLTDADGQGMLCMNKDQLEELRVKPLSASTASKRTLVP 333

Query: 344 ALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSAFEEPYGTAAKM 403
           ALNMRLWYAP+LELP G+VLKGATLVAIRPSEQS +KKEVSDGSW+ +AFEEPYGTAAK+
Sbjct: 334 ALNMRLWYAPHLELPGGIVLKGATLVAIRPSEQSMTKKEVSDGSWLSNAFEEPYGTAAKI 393

Query: 404 LVKRRTYCLEMNSF 417
           LVKRRTYCLEMNSF
Sbjct: 394 LVKRRTYCLEMNSF 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2009822	379	AT1G30200 "AT1G30200" [Arabido	0.381	0.419	0.870	1.1e-119
TAIR|locus:2161383	395	AT5G46170 "AT5G46170" [Arabido	0.599	0.632	0.792	4.7e-103
TAIR|locus:2124524	380	AT4G18380 "AT4G18380" [Arabido	0.494	0.542	0.739	2e-96
TAIR|locus:2015046	314	AUF2 "AT1G22220" [Arabidopsis	0.369	0.490	0.407	7.1e-49
TAIR|locus:2194719	334	AUF1 "AT1G78100" [Arabidopsis	0.354	0.443	0.387	1.6e-47

TAIR|locus:2009822 AT1G30200 "AT1G30200" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 1.1e-119, Sum P(3) = 1.1e-119
 Identities = 141/162 (87%), Positives = 149/162 (91%)

Query:   256 DDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGV 315
             +DNG+IPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII EHK+LD LVL+DADGQGV
Sbjct:   221 EDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINEHKSLDRLVLSDADGQGV 280

Query:   316 LCMNREQLEELRVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSE 375
             LCMNREQLEELRV PLSASSASKRTLVPALNMRLWYAP L+LPDG VLKGATLVAIRPSE
Sbjct:   281 LCMNREQLEELRVTPLSASSASKRTLVPALNMRLWYAPELDLPDGTVLKGATLVAIRPSE 340

Query:   376 QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
                SKKEV D SW+  AFEEP+GT AKML+KRRTYCLEMNSF
Sbjct:   341 ---SKKEVCDASWLSDAFEEPFGTVAKMLIKRRTYCLEMNSF 379

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161383 AT5G46170 "AT5G46170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 210/265 (79%), Positives = 221/265 (83%)

Query:   153 DDEEMDQGGVTHHSPTQVLKNFNEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVI 212
             D  E++QGGVTHHSPTQVLKNF+EIR+LRIELPSGELGIDDGVLLKWRA+FGSTLDNCVI
Sbjct:   146 DGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVI 205

Query:   213 LGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFYTNGGLK 272
             LGA+SV+               P                   +DDNGSIPESFYTNGGLK
Sbjct:   206 LGASSVI------------PPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLK 253

Query:   273 LRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVKPLS 332
             LRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD+DGQGVLCMNR+QLEELRVKPL+
Sbjct:   254 LRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLA 313

Query:   333 ASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDGSWVGSA 392
             ASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEVSD SWV SA
Sbjct:   314 ASSASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRPSE---SKKEVSDISWVSSA 370

Query:   393 FEEPYGTAAKMLVKRRTYCLEMNSF 417
             FEEPY TAAKMLVKRRTYCLEMNSF
Sbjct:   371 FEEPYETAAKMLVKRRTYCLEMNSF 395

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010286 "heat acclimation" evidence=IEP

TAIR|locus:2124524 AT4G18380 "AT4G18380" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 156/211 (73%), Positives = 168/211 (79%)

Query:   207 LDNCVILGAASVMNNVLAKALDIGATDLPCXXXXXXXXXXXXXXXXGATDDNGSIPESFY 266
             +D+ V+L   +   + L   + +GA+ +                   A +DNGSIPESFY
Sbjct:   175 IDDGVLLKWRAEFGSTLENCVILGASSV--IPPTNSDKTEASSAPVAAVEDNGSIPESFY 232

Query:   267 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEEL 326
             TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTD DGQGVLCMNR+QLEEL
Sbjct:   233 TNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDVDGQGVLCMNRDQLEEL 292

Query:   327 RVKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVSDG 386
             RVKPLSASSASKRTLVPALNMRLWYAP LELPDG VLKGATLVAIRPSE   SKKEV D 
Sbjct:   293 RVKPLSASSASKRTLVPALNMRLWYAPSLELPDGTVLKGATLVAIRPSE---SKKEVCDV 349

Query:   387 SWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
             SWV SAF+EPYG AAKMLVKRRTYCLEMNSF
Sbjct:   350 SWVSSAFDEPYGVAAKMLVKRRTYCLEMNSF 380

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015046 AUF2 "AT1G22220" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 7.1e-49, Sum P(3) = 7.1e-49
 Identities = 68/167 (40%), Positives = 102/167 (61%)

Query:   259 GSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCM 318
             G     F T  GLK RVVWTIS+L+AAS+RHYL++ ++ EH+ ++SLV+ D + +G + M
Sbjct:   153 GESDAEFVT--GLKTRVVWTISALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVM 210

Query:   319 NREQLEELR-----VKPLSASSASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRP 373
             N E L+ELR     V+       +KR++VP++ M + +AP L+L  G+ L+ ATLV +RP
Sbjct:   211 NEEGLKELRNTEARVEDEERVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRP 270

Query:   374 SE---QSASKKEVSDGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
             S    +     E++  ++VG      YG A   L+K +   LEMNSF
Sbjct:   271 SGADFEVGDDAELATEAFVGDCM---YGEAVVALLKCKKNALEMNSF 314

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2194719 AUF1 "AT1G78100" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 60/155 (38%), Positives = 96/155 (61%)

Query:   270 GLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDADGQGVLCMNREQLEELRVK 329
             GLK RVVWTIS+L+AAS RHYL++ ++ +HK ++ L++ D+DG+G + M+   ++E R  
Sbjct:   180 GLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYRET 239

Query:   330 PLSASS-----ASKRTLVPALNMRLWYAPYLELPDGVVLKGATLVAIRPSEQSASKKEVS 384
              +   +       +RT+VP++ M + +AP L L  G+ L+ ATLV +RP+  ++   +V 
Sbjct:   240 EVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDDNDVE 299

Query:   385 --DGSWVGSAFEEPYGTAAKMLVKRRTYCLEMNSF 417
                 ++ G   +  YG A   L+KRR   LEMNSF
Sbjct:   300 LVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNK5	FB285_ARATH	No assigned EC number	0.7240	0.9136	0.9645	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
pfam12937	47	pfam12937, F-box-like, F-box-like	9e-05
pfam00646	48	pfam00646, F-box, F-box domain	6e-04

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56
             LPD +LL +F+ + D + L R  +V RR+  L 
Sbjct: 1  LSDLPDEILLQIFSYL-DPRDLLRLALVCRRWRELA 35

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56
               LPD +LL + +++ D K L R  +VS+R+ SLV
Sbjct: 1  FSLLDLPDDLLLEILSRL-DPKDLLRLSLVSKRWRSLV 37

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	97.74
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.11
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	96.95
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.79

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=97.74  E-value=7.1e-06  Score=58.51  Aligned_cols=35  Identities=34%  Similarity=0.644  Sum_probs=30.7

Q ss_pred             CCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838           21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        21 FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV   56 (417)
                      ...||++++..||+-+ |++.|.+|+.|||+|+.++
T Consensus         1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            3689999999999988 9999999999999999887

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.11  E-value=0.00015  Score=48.61  Aligned_cols=34  Identities=41%  Similarity=0.562  Sum_probs=30.8

Q ss_pred             CChhHHHHHHhhccCccccchhhhhcccccccccc
Q 014838           24 LPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ   58 (417)
Q Consensus        24 LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpq   58 (417)
                      ||++++..||..+ |.+.+.+|+.|||+|+.++..
T Consensus         1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999888 679999999999999998753

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=96.95  E-value=9.9e-05  Score=51.99  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=29.4

Q ss_pred             CCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        21 FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      |.+||++++..||+++. .+++.+|+.|||+|++++-
T Consensus         3 ~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred             HHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence            67899999999999985 5669999999999999874

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.12  E-value=0.016  Score=59.15  Aligned_cols=38  Identities=29%  Similarity=0.464  Sum_probs=34.8

Q ss_pred             CCCCCCChhHHHHHHhhcc----Cccccchhhhhcccccccc
Q 014838           19 DHFDRLPDSVLLLVFNKIG----DVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        19 D~FD~LPDsLlLlIFNKI~----DvKsLgRCsaVSKRF~SLV   56 (417)
                      ++|..|||++|+.||.++=    |.++|++|+.|||.|.-.+
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~  146 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA  146 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence            7899999999999999976    9999999999999998654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=0.034  Score=57.10  Aligned_cols=49  Identities=31%  Similarity=0.473  Sum_probs=40.2

Q ss_pred             CCCCCCCCChhHHHHHHhhccCccccchhhhhcccccccccceeeEEEEEe
Q 014838           17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVD   67 (417)
Q Consensus        17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpqvdnV~vrvD   67 (417)
                      |.-.||+||||+++.||.-+. -|+|-+-+.|+|||+.+... +.+-.+.|
T Consensus        94 pgv~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d-e~lW~~lD  142 (419)
T KOG2120|consen   94 PGVSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD-ESLWQTLD  142 (419)
T ss_pred             CCCCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc-ccceeeec
Confidence            335699999999999998776 58899999999999998875 44555665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 77/471 (16%), Positives = 131/471 (27%), Gaps = 182/471 (38%)

Query: 8   DPPSRVFP-EPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVR- 65
           D P  +   E IDH     D+V                     R F +L+ + + +V + 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVS-----------------GTLRLFWTLLSKQEEMVQKF 82

Query: 66  VDCVISDDDS--SSSSSEKSRSPFSNLFRYV------FGGI----------VKPFQALGQ 107
           V+ V+  +     S    + R P      Y+      +             ++P+  L Q
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 108 -LLGAKRTQFHHNNQHLTTSGHAPAAFCASSSSGSGTT---------------------- 144
            LL  +  +       +   G            GSG T                      
Sbjct: 143 ALLELRPAKN------VLIDGVL----------GSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 145 LSVGSSSADDEEMDQ-----------GGVTHHSPTQVLKNFNEI-----RFLRIE-LPSG 187
           L++ + ++ +  ++                    + +    + I     R L+ +   + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 188 ELGIDDGVLLK--WRA-DFGS-----TLDNCVI--LGAASVMN----------------N 221
            L + + V     W A +        T    V   L AA+  +                +
Sbjct: 247 LLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 222 VLAKALDIGATDLPCVSSNNNNSNNNNTNVNGATDDNGSIPESFYTNGGLKLRVVWTISS 281
           +L K LD    DLP      N                   P         +L       S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTN-------------------P--------RRL-------S 331

Query: 282 LIAASARH------YLLQPIIAEHKTL--DSL-VLTDADGQGVLCMNREQLEELRVKPLS 332
           +IA S R               +  T+   SL VL  A+        R+  + L V P  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-------YRKMFDRLSVFP-- 382

Query: 333 ASSASKRTLVPA--LNMRLWYAPYLELPDGVV--LKGATLVAIRPSEQSAS 379
                    +P   L   +W+         VV  L   +LV  +P E + S
Sbjct: 383 -----PSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 15 PEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSL 55
            P   +D LPD +LL +F+ +  +  L +   V +R++ L
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRL 42

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 6  RVDPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56
            +       E +++   LP+ +LL V  ++   + +  C +V  R+  LV
Sbjct: 36 LREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 8   DPPSRVFPEPIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVD 67
           DP  +             D V+  V   I D K      +V RR+  +  +    V    
Sbjct: 3   DPDIKRCKLSCVA---TVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL 59

Query: 68  CVISDDDSSSSS---------SEKSRSPFSNLFRYVFGGIVKPF 102
           C  +  D  S             K R+   NL    +GG V P+
Sbjct: 60  CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPW 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.08
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.62
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.3
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	93.13

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.02  E-value=1.2e-06  Score=62.45  Aligned_cols=40  Identities=30%  Similarity=0.457  Sum_probs=33.8

Q ss_pred             CCCCCCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      +.+.|+.|||+++..||..+ |++.|.||+.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999998 68999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.08  E-value=5e-05  Score=68.90  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=36.7

Q ss_pred             CCCCCCChhHHHHHHhhccCccccchhhhhcccccccccc
Q 014838           19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ   58 (417)
Q Consensus        19 D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVpq   58 (417)
                      |.+..||+++++.||+-+ |+++|.||+.|||+|+.|+-.
T Consensus        13 d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred             CChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence            899999999999999988 999999999999999998754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.06  E-value=0.00013  Score=70.19  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=35.5

Q ss_pred             CCCCCCChhHHHHHHhhccCccccc-hhhhhccccccccc
Q 014838           19 DHFDRLPDSVLLLVFNKIGDVKALG-RCCVVSRRFHSLVP   57 (417)
Q Consensus        19 D~FD~LPDsLlLlIFNKI~DvKsLg-RCsaVSKRF~SLVp   57 (417)
                      .....|||+|++.||..+ ++++|. ||+.|||||+.|+.
T Consensus        49 ~~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence            678999999999999998 789999 99999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.88  E-value=0.0002  Score=65.28  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             CCCCCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        18 ~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      .|.|+.||++|++.||.-+ |+++|.||+.|||+|+.++.
T Consensus        16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence            4999999999999999988 79999999999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.62  E-value=0.00036  Score=66.44  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CCCCCCCChhHHHHHHhhccCccccchhhhhccccccc
Q 014838           18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSL   55 (417)
Q Consensus        18 ~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SL   55 (417)
                      .|.|+.|||+++..||..+.+.+.+.||+.|||||+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.48  E-value=0.00027  Score=64.58  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=35.7

Q ss_pred             CCCCCCCChh----HHHHHHhhccCccccchhhhhccccccccc
Q 014838           18 IDHFDRLPDS----VLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        18 ~D~FD~LPDs----LlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      .|.|..||++    |++.||.-+ |+++|.||+.|||||+.++-
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence            3999999999    999999887 79999999999999998873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.24  E-value=0.00096  Score=59.18  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             CCCCCCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838           17 PIDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        17 ~~D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV   56 (417)
                      +...|+.|||+++..||..+ |.+.+.||+.|||||+.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~   43 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLA   43 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence            34679999999999999988 5568999999999999997

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.30  E-value=0.0031  Score=60.15  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             CCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838           23 RLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        23 ~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV   56 (417)
                      .|||+++..||..+.+.|.+.+|+.|||||+.+.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            6999999999999999999999999999998874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=93.13  E-value=0.011  Score=57.83  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             CCCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838           20 HFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        20 ~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV   56 (417)
                      .||.||+++++.||.-+ ++|.|.||..|||+|+.++
T Consensus         4 ~l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la   39 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETV   39 (312)
T ss_dssp             HHHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Confidence            37899999999999877 5777999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-05
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56
          +D LPD +LL +F+ +  +  L +   V +R++ L 
Sbjct: 1  WDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLA 35

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 18 IDHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVPQ 58
           D    LP  + L V + + + K L +     R +  L   
Sbjct: 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV 56
          D    LP  + L +FN +   + +     VS+ ++ ++
Sbjct: 4  DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKII 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.04
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.0
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.37

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.6e-09  Score=70.66  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=34.1

Q ss_pred             CCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           21 FDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        21 FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      |+.|||++++.||..+ |+++|.||+.|||||+.++.
T Consensus         1 f~~LP~eil~~If~~L-~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999 99999999999999998763

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=1.6e-07  Score=72.85  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             CCCCCCChhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        19 D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      |.|..||+||++.||..+ |+++|+||+.|||+|+.++.
T Consensus         4 D~~~~LP~Ell~~I~s~L-d~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTS-CHHHHHHHTTTCHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998 99999999999999998864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.8e-07  Score=69.17  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCCCCCChhHHHHHHhhccCccccchhhhhcccccccc
Q 014838           19 DHFDRLPDSVLLLVFNKIGDVKALGRCCVVSRRFHSLV   56 (417)
Q Consensus        19 D~FD~LPDsLlLlIFNKI~DvKsLgRCsaVSKRF~SLV   56 (417)
                      |.|..|||+|++.||.-+ |+++|+||+.|||||+.++
T Consensus        17 D~i~~LP~Eil~~Ils~L-d~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             STTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 9999999999999999985

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.8e-06  Score=64.75  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=35.3

Q ss_pred             CCCCCCC----hhHHHHHHhhccCccccchhhhhccccccccc
Q 014838           19 DHFDRLP----DSVLLLVFNKIGDVKALGRCCVVSRRFHSLVP   57 (417)
Q Consensus        19 D~FD~LP----DsLlLlIFNKI~DvKsLgRCsaVSKRF~SLVp   57 (417)
                      |.+..||    |||++.||+-+ |+++|+||+.|||+|+.++.
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~L-d~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHc
Confidence            8888888    69999999999 99999999999999999874