Citrus Sinensis ID: 014886
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | 2.2.26 [Sep-21-2011] | |||||||
| O34508 | 366 | L-Ala-D/L-Glu epimerase O | yes | no | 0.817 | 0.928 | 0.369 | 4e-49 | |
| Q9WXM1 | 345 | L-Ala-D/L-Glu epimerase O | yes | no | 0.742 | 0.895 | 0.367 | 8e-48 | |
| Q97MK4 | 358 | L-Ala-D/L-Glu epimerase O | yes | no | 0.786 | 0.913 | 0.342 | 2e-38 | |
| O33949 | 385 | Muconate cycloisomerase 1 | N/A | no | 0.841 | 0.909 | 0.270 | 1e-19 | |
| Q43931 | 370 | Muconate cycloisomerase 1 | yes | no | 0.742 | 0.835 | 0.249 | 8e-19 | |
| P51981 | 321 | L-Ala-D/L-Glu epimerase O | N/A | no | 0.706 | 0.915 | 0.298 | 7e-18 | |
| O34514 | 371 | o-succinylbenzoate syntha | no | no | 0.694 | 0.778 | 0.239 | 3e-14 | |
| P42428 | 372 | Chloromuconate cycloisome | no | no | 0.699 | 0.782 | 0.268 | 2e-13 | |
| P27099 | 370 | Chloromuconate cycloisome | N/A | no | 0.502 | 0.564 | 0.279 | 2e-12 | |
| P08310 | 375 | Muconate cycloisomerase 1 | yes | no | 0.733 | 0.813 | 0.265 | 2e-12 |
| >sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 | Back alignment and function desciption |
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Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 188/360 (52%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGV------VAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
S VLK PA+ S+ G + LL G+ S +AAVEMAL D A+ +
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGL 117
Query: 164 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRA 222
PL+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++
Sbjct: 118 PLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQE 177
Query: 223 IRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
IR V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+
Sbjct: 178 IRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT--- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D + ADES + ++++ AD+INIKL K G+ GA +I + A G+ M
Sbjct: 235 -DATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECM 293
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+G M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 294 VGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipeptides L-Ala-L-Asp, L-Ala-L-Leu, L-Ala-L-Met, and L-Ala-L-Ser. Is not able to epimerize other L-Ala-X dipeptides. Is also active with L-Ser-L-Glu and, oddly, L-Pro-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1 |
| >sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1 | Back alignment and function description |
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Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI 182
+F + L F S++AAV+ A +DA+++ + + L GG + I TD T+
Sbjct: 79 VRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTV 135
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN GY
Sbjct: 136 GIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQ 195
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
+EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+ DV
Sbjct: 196 KEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKFDVM 251
Query: 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H + G G
Sbjct: 252 RLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311
Query: 363 CFKFIDLDTPLLLSED 378
F+F DLD+ L+L E+
Sbjct: 312 AFEFHDLDSHLMLKEE 327
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other dipeptides; is most efficient with L-Ala-D/L-Phe, L-Ala-D/L-Tyr, and L-Ala-D/L-His. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0192 PE=1 SV=1 | Back alignment and function description |
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Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 18/345 (5%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
L+VPL PF A ++ V +V ++I G VG+G A VT + ++ ++ +
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITES--IEGAINN 68
Query: 116 EVLKESPAMALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
+ + M + ++ L + G+ S +AAV++AL D + PL++L GG
Sbjct: 69 YIKRSIVGMDIEDFEAILIKLDNCIVGN--TSAKAAVDIALYDLYGQRYGAPLYKLLGGF 126
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
N + TDITI + SP E + + K G+ TLK+KVGKN K DI+ +R IR A+ + +
Sbjct: 127 RNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVN 186
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
+DAN+G++P+EA+ L ++ G+ L EQPV + EGL V+ D + V A
Sbjct: 187 LRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMA 242
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D ++++ D+INIKL K G+ AL+I + G+ M+G M+E +++
Sbjct: 243 DESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVS 302
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395
+ A HL+A IDLD P+L S D V V GA+Y +N
Sbjct: 303 VTAAVHLAAAKRIITKIDLDGPVLCSRDDV-----VGGAMYDNSN 342
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the epimerization of L-Ala-D-Asp. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2 | Back alignment and function description |
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Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 177/377 (46%), Gaps = 27/377 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V ++ E ++VP I P ++ + ++ V +RI ++G VG GE + + ++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 106 TAMVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+K + +LK A G+ + GL G++FA R+AVE AL DA A+ +
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLG 123
Query: 163 MPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLK 214
+PL LFGG V+ T+ + T + AE A ++R KLK+G + L
Sbjct: 124 VPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSRALA 178
Query: 215 EDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+D+ + AI +A+ +D N+ + EA+ ++ + V L EQP+ ++ G
Sbjct: 179 DDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAG 236
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVV 332
L ++ +A+ V + ADE+ D + ADV +K+A+ G L GA + +
Sbjct: 237 LKRLTDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVAAIA 292
Query: 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVY 391
A+ ++L G M+E + + L + G K+ +L PLLL+E+ + + V
Sbjct: 293 LAANIDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYENFVL 352
Query: 392 KFTNARGHGGFLHWDNI 408
G G L WD I
Sbjct: 353 HLPQGPGLGITLDWDKI 369
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Catalyzes a syn cycloisomerization. Acinetobacter lwoffii (taxid: 28090) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1) GN=catB PE=3 SV=2 | Back alignment and function description |
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Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 166/337 (49%), Gaps = 28/337 (8%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+++P I P ++ + + V I+I +G VGWGEA + + ++ VKA+
Sbjct: 10 VDIPTIRPHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDT 69
Query: 116 E----VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
+L + + ++ + G++FA + A++ AL++ AK +++P+ L GG
Sbjct: 70 YFKPLLLSIKAPLNVAQTLKLIRKSINGNRFA--KCAIQTALLEIQAKRLNVPVSELLGG 127
Query: 172 VSNTITTDITIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAI 223
+P++ + + AE + T KLK+G N L+ D++ + AI
Sbjct: 128 RIRD-----RLPVLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHVIAI 182
Query: 224 -RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
+A+ P+ S +D N + E V+ +++L + G+ L EQP ++ + L ++
Sbjct: 183 KKALGPEISVRVDVNRAWSELECVKGIQQLQDGGID--LIEQPCAIENTDALARLTA--- 237
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
+F V++ ADE D +I K + ADV +K+ + G++ A E+ ++ R +G++L
Sbjct: 238 -RFDVAIMADEVLTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGISLYG 296
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSE 377
G M+E + + H + +F +L PLLL++
Sbjct: 297 GTMLEGPVGSIASAHAFSTFETLEFGTELFGPLLLTQ 333
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Catalyzes a syn cycloisomerization. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG PE=1 SV=2 | Back alignment and function description |
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Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 64 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+DAN
Sbjct: 121 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 231 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 289 LVPQVS---FADLDGPTWLAVD 307
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala-L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Escherichia coli (strain K12) (taxid: 83333) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168) GN=menC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 150/313 (47%), Gaps = 24/313 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTA--MVKASEACEVLKES---PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
T M+K V+ P+ S+ G++ A +A +E A+ D A
Sbjct: 62 IGTCLHMLKDFFIPNVVGREFNHPSEVPDSL-----ARYKGNRMA--KAGLESAVWDIYA 114
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
K + L GG + + + + + + + Y+K+G+ +K+K+ +D+E
Sbjct: 115 KKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDVE 172
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD H+
Sbjct: 173 LVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDIVDHRHLQ 229
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGL 337
K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ + +
Sbjct: 230 KHLK----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHM 285
Query: 338 NLMIGGMVETRLA 350
+ GGM+ET ++
Sbjct: 286 QVWCGGMLETGIS 298
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Converts SHCHC to OSB. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 3 |
| >sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 25/316 (7%)
Query: 76 NVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKASEACEVLKESPAMALGSVFG 131
+V IR+ G VG GE+ P P + + + A + A V+ E PA+ +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAIQATINHYLAPLVVGE-PALDASRIMA 81
Query: 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA 191
+ G + G+ FA +A +EMAL+DAV K V P+ L GG + P+ +
Sbjct: 82 KLHGRVAGNAFA--KAGIEMALLDAVGKIVDAPIHVLLGGRFRD-RLSVAWPLATGDVNQ 138
Query: 192 ELASKYR-----KQGFTTLKLKVGK-NLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQE 244
E+ +R K G KLK+G L +D+ AI + + +S +D NE +
Sbjct: 139 EVDEAFRMLEAGKAG--AFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWDEPT 196
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
+ L L GV + EQPV R + + + + A+ + DE +SL D ++
Sbjct: 197 TMRALAPLEAAGVE--IIEQPVARWNLDAMARIHRQARSMLLI----DEGVQSLHDASEV 250
Query: 305 VKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
VK A ++++K+ K G + A + ++ A G+++ +G +ET + L+A +
Sbjct: 251 VKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIES 310
Query: 364 FKF-IDLDTPLLLSED 378
+ ++ PLL+ ED
Sbjct: 311 LPYGGEVIGPLLIEED 326
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Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|P27099|TCBD_PSESQ Chloromuconate cycloisomerase OS=Pseudomonas sp. (strain P51) GN=tcbD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
++KL + G+ L++ V A+G++ G M+++ + A H+ A L +
Sbjct: 265 AFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPY 320
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Pseudomonas sp. (strain P51) (taxid: 65067) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 27/332 (8%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---SEACEVLK 119
P +A + V IR+ S+G G GEA + + + +KA + L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------V 172
PA + + + L G+ FA ++ +E AL+DA K + +P+ L GG V
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDSLEV 140
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSS 231
+ T+ + T + AEA + R + F KLK+G N L +D++ + AI+ DS+
Sbjct: 141 AWTLASGDTARDI--AEAQHMLEIRRHRVF---KLKIGANPLAQDLKHVVAIKRELGDSA 195
Query: 232 FI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+ +D N+ + +A+ + L + G+ L EQP+ R + G ++ + +
Sbjct: 196 SVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRSGQVRLNQ----RSPAPIM 249
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEVVRASGLNLMIGGMVETRL 349
ADES S++D + A + +K+AK G A L ++ A+G+ L G M+E +
Sbjct: 250 ADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGSI 309
Query: 350 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
+ H L + +L PLLL+E+ V
Sbjct: 310 GTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 341
|
Catalyzes a syn cycloisomerization. Pseudomonas putida (taxid: 303) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | ||||||
| 225456012 | 420 | PREDICTED: l-Ala-D/L-Glu epimerase [Viti | 0.983 | 0.973 | 0.776 | 0.0 | |
| 297734245 | 401 | unnamed protein product [Vitis vinifera] | 0.915 | 0.950 | 0.821 | 0.0 | |
| 224118774 | 387 | predicted protein [Populus trichocarpa] | 0.930 | 1.0 | 0.799 | 0.0 | |
| 356512290 | 387 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.930 | 1.0 | 0.791 | 1e-174 | |
| 356525058 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.930 | 0.875 | 0.786 | 1e-173 | |
| 449439093 | 432 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.918 | 0.884 | 0.766 | 1e-169 | |
| 255567834 | 375 | muconate cycloisomerase, putative [Ricin | 0.843 | 0.936 | 0.817 | 1e-166 | |
| 357133316 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.899 | 0.846 | 0.711 | 1e-155 | |
| 242052167 | 439 | hypothetical protein SORBIDRAFT_03g00667 | 0.903 | 0.856 | 0.702 | 1e-154 | |
| 18401824 | 410 | cytochrome P450, family 77, subfamily A, | 0.942 | 0.956 | 0.684 | 1e-153 |
| >gi|225456012|ref|XP_002277056.1| PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/420 (77%), Positives = 359/420 (85%), Gaps = 11/420 (2%)
Query: 1 MLSVGFYL--PFNNIKPQ--KPICQMASSPP-------AAAAPTSFSFKNLTQTFTVDVQ 49
M +GF L F KP+ KP SSP A A PT+F FKNL +TFTVDVQ
Sbjct: 1 MALIGFSLHSQFLCSKPRTSKPRRIGPSSPSGSAVVKMAVATPTTFGFKNLIETFTVDVQ 60
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
RAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGCVGWGE P+LP VTAE+Q TAM
Sbjct: 61 RAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGEGPILPFVTAENQATAMA 120
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
KA+E CEVL+ PAM LG + G + LPGH+FASVRA VEMALIDAVA S+ +PLWRLF
Sbjct: 121 KAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMALIDAVANSMGIPLWRLF 180
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
GGVSN ITTDITIPIVSPA+AAELA+KYRKQGF TLKLKVGKNL DIEVL+AIR HPD
Sbjct: 181 GGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKNLNADIEVLQAIRVAHPD 240
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQPVHRDDWEGLGHVS +A+DK+GVSV
Sbjct: 241 CLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWEGLGHVSKVARDKYGVSV 300
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRL 349
AADESCRSL DVKKIV+GNLA+VINIKLAKVGVLGALEII+ RA+GL+LMIGGMVETRL
Sbjct: 301 AADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAARAAGLDLMIGGMVETRL 360
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
AMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY+VSGAVYKFTNARGHGGFLHWDNIA
Sbjct: 361 AMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYKFTNARGHGGFLHWDNIA 420
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734245|emb|CBI15492.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/381 (82%), Positives = 344/381 (90%)
Query: 28 AAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC 87
A A PT+F FKNL +TFTVDVQRAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGC
Sbjct: 2 AVATPTTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGC 61
Query: 88 VGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRA 147
VGWGE P+LP VTAE+Q TAM KA+E CEVL+ PAM LG + G + LPGH+FASVRA
Sbjct: 62 VGWGEGPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRA 121
Query: 148 AVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 207
VEMALIDAVA S+ +PLWRLFGGVSN ITTDITIPIVSPA+AAELA+KYRKQGF TLKL
Sbjct: 122 GVEMALIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKL 181
Query: 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
KVGKNL DIEVL+AIR HPD FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQPVH
Sbjct: 182 KVGKNLNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVH 241
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327
RDDWEGLGHVS +A+DK+GVSVAADESCRSL DVKKIV+GNLA+VINIKLAKVGVLGALE
Sbjct: 242 RDDWEGLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALE 301
Query: 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS 387
II+ RA+GL+LMIGGMVETRLAMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY+VS
Sbjct: 302 IIDAARAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVS 361
Query: 388 GAVYKFTNARGHGGFLHWDNI 408
GAVYKFTNARGHGGFLHWDNI
Sbjct: 362 GAVYKFTNARGHGGFLHWDNI 382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118774|ref|XP_002317902.1| predicted protein [Populus trichocarpa] gi|222858575|gb|EEE96122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/389 (79%), Positives = 350/389 (89%), Gaps = 2/389 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MA S P ++F F++L +TF VDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRI
Sbjct: 1 MAGSNPKQV--STFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRI 58
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELS+GCVGWGEAP+LP VTAEDQ TAM+KA EACE+LK S +M LG V V+ +LPGH+
Sbjct: 59 ELSDGCVGWGEAPILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHE 118
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FASVRA VEMALIDAVAKS+++PLW LFGG S++ITTDITIPIVS AEAAELASKYRKQG
Sbjct: 119 FASVRAGVEMALIDAVAKSINVPLWILFGGASDSITTDITIPIVSSAEAAELASKYRKQG 178
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNLKEDIEVL+AIRAVHPD FILDANEGYKP+EA+EVLE+L++MGVTP+L
Sbjct: 179 FQTLKLKVGKNLKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVTPIL 238
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDWEGLGHV+HIAK K+GVSVAADESCRSL D K+I+KGNLADVINIKLAKVG
Sbjct: 239 FEQPVHRDDWEGLGHVTHIAKGKYGVSVAADESCRSLVDAKRIIKGNLADVINIKLAKVG 298
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+G LEIIE R SGL+LMIGGMVETRLAMGFAGHL+AG GCFKFIDLDTPLLLSEDPVL
Sbjct: 299 VVGGLEIIEEARTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSEDPVL 358
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNIAW 410
+GYEVSGAVYKFT+A+GH GFL WDN+ W
Sbjct: 359 EGYEVSGAVYKFTDAQGHAGFLDWDNVLW 387
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512290|ref|XP_003524853.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/388 (79%), Positives = 347/388 (89%), Gaps = 1/388 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AAA T F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRLD+VENVAIR+
Sbjct: 1 MASATPTAAAIT-FGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRV 59
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAMVKASEAC L++ PA+ LGS+ G +AG+LPGHQ
Sbjct: 60 ELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQ 119
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FAS RA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY K+G
Sbjct: 120 FASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEG 179
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNL DIEVL+AIR HP FILDANEGY +EAV+VLEKL++MG+TPVL
Sbjct: 180 FKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVL 239
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLAKVG
Sbjct: 240 FEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVG 299
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+DPVL
Sbjct: 300 VMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVL 359
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 360 EGYEVSGATYKFTNARGHGGFLHWDNLA 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525058|ref|XP_003531144.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 305/388 (78%), Positives = 345/388 (88%), Gaps = 1/388 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AA P +F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRL +VENVAIR+
Sbjct: 56 MASATPTAA-PITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVAIRV 114
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAM KASEAC L+ PA+ LGS+ G +AG+LPGHQ
Sbjct: 115 ELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILPGHQ 174
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FASVRA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY K+G
Sbjct: 175 FASVRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEG 234
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNL DIEVL+AIR HP+ FILDANEGY +EAVEVLEKL++M +TPVL
Sbjct: 235 FKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLTPVL 294
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLAKVG
Sbjct: 295 FEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLAKVG 354
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+DPVL
Sbjct: 355 VMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVL 414
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 415 EGYEVSGATYKFTNARGHGGFLHWDNLA 442
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439093|ref|XP_004137322.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] gi|449497562|ref|XP_004160436.1| PREDICTED: LOW QUALITY PROTEIN: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/386 (76%), Positives = 341/386 (88%), Gaps = 4/386 (1%)
Query: 28 AAAAP----TSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIEL 83
AAAAP S FKNL +TFTV+VQRAENR LNVPLI PFTIA+SRL+ VENVAIRIEL
Sbjct: 46 AAAAPADSRNSLGFKNLMETFTVNVQRAENRTLNVPLIEPFTIASSRLEMVENVAIRIEL 105
Query: 84 SNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFA 143
SNGCVGWGEAP+LP VTAEDQ TAM KA E CE+L++ P LGS ++ LPGH+FA
Sbjct: 106 SNGCVGWGEAPILPFVTAEDQSTAMAKAEEVCELLRQRPPSTLGSAMMQISETLPGHEFA 165
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFT 203
SVRA VEMALIDAVA S+++PLW+LFGGVS++ITTDITIPI S + AA+LA+KYR QGF
Sbjct: 166 SVRAGVEMALIDAVANSINIPLWKLFGGVSDSITTDITIPITSASNAAKLAAKYRDQGFK 225
Query: 204 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
TLKLKVGK+LK DIEVL++IR VHPD FILDANEGY +EA++VLEKL+E+GVTP LFE
Sbjct: 226 TLKLKVGKDLKSDIEVLKSIRMVHPDCEFILDANEGYDTEEAIQVLEKLHELGVTPTLFE 285
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
QPVHRD+WEGLG+VS +A+DK+GVSVAADESCRS+DDVK+IV+G+LADVINIKLAKVGVL
Sbjct: 286 QPVHRDNWEGLGNVSRVARDKYGVSVAADESCRSVDDVKRIVEGDLADVINIKLAKVGVL 345
Query: 324 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG 383
GA+EIIEV R SGL+LMIGGMVETRLAMGF+GHL+AGLGCFK+IDLDTPLLLSEDPV G
Sbjct: 346 GAIEIIEVARGSGLSLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDTPLLLSEDPVHGG 405
Query: 384 YEVSGAVYKFTNARGHGGFLHWDNIA 409
YEVSGAVYKFTN++GHGG+LHWDNIA
Sbjct: 406 YEVSGAVYKFTNSQGHGGYLHWDNIA 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567834|ref|XP_002524895.1| muconate cycloisomerase, putative [Ricinus communis] gi|223535858|gb|EEF37519.1| muconate cycloisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/351 (81%), Positives = 317/351 (90%)
Query: 35 FSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP 94
F F++L +T TVDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRIELSNGC GWGE P
Sbjct: 16 FGFRDLMETLTVDVERAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSNGCAGWGETP 75
Query: 95 VLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALI 154
+LP VTAEDQ TAMVKA EACE+LK SP M LGS+ + +LPGHQFASVRA VEMALI
Sbjct: 76 ILPFVTAEDQPTAMVKAREACELLKSSPPMTLGSLLEKIGAILPGHQFASVRAGVEMALI 135
Query: 155 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK 214
DAVA S+ +PLWRLFGGVS++ITTDITIPIVSP EAAELASKYRKQGF TLKLKVGKNLK
Sbjct: 136 DAVANSIGIPLWRLFGGVSDSITTDITIPIVSPTEAAELASKYRKQGFKTLKLKVGKNLK 195
Query: 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274
DIEVL+AIRAV+PD FILDANEGYKP+EA+EVLEKL+EM VTP+LFEQPVHRDDWEGL
Sbjct: 196 ADIEVLQAIRAVYPDCLFILDANEGYKPKEAIEVLEKLHEMQVTPILFEQPVHRDDWEGL 255
Query: 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRA 334
GHV+ IAK K+GVSVAADESCR L DVKKIV+GNLADVINIKLAKVGV+ ALEIIE+ RA
Sbjct: 256 GHVTSIAKGKYGVSVAADESCRGLIDVKKIVEGNLADVINIKLAKVGVVEALEIIELARA 315
Query: 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYE 385
S L+LMIGGMVETRLAMGFAGHL+AGLGCFKF+DLDTPLLL+EDPV GYE
Sbjct: 316 SRLDLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPLLLAEDPVHGGYE 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133316|ref|XP_003568272.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/374 (71%), Positives = 307/374 (82%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
+F F+ L +TF+VDV AE RPL+VPL APFTIA+SRL+ V NVA+R+ELS+G VGWGEA
Sbjct: 64 TFGFEALKETFSVDVSAAEARPLDVPLAAPFTIASSRLESVSNVAVRVELSSGAVGWGEA 123
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
PVLP VTAEDQ A+ AC L +P+ LG+V VA LPGH FAS RA VEMA+
Sbjct: 124 PVLPSVTAEDQPAALAAVGRACAKLAGAPSAPLGAVLEDVAAALPGHAFASARAGVEMAV 183
Query: 154 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL 213
IDAVA S+ +PLWRLFGG SN++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVGKNL
Sbjct: 184 IDAVANSIRVPLWRLFGGASNSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 243
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDDWEG
Sbjct: 244 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWEG 303
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
L VS A +K+ V+VAADESCR L D +KI+ GNL+ VINIKLAK+GVLGALE+I+ R
Sbjct: 304 LRDVSTAAMEKYRVAVAADESCRGLLDAQKIINGNLSHVINIKLAKLGVLGALEVIDAAR 363
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393
+G+ LMIGGMVETR+AMGFAGHL+AGLGCF FIDLDTPLLLSEDPV GYE SG +YKF
Sbjct: 364 KAGIALMIGGMVETRIAMGFAGHLAAGLGCFSFIDLDTPLLLSEDPVYGGYEASGPLYKF 423
Query: 394 TNARGHGGFLHWDN 407
TNARGHGGFLH DN
Sbjct: 424 TNARGHGGFLHLDN 437
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052167|ref|XP_002455229.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] gi|241927204|gb|EES00349.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/376 (70%), Positives = 310/376 (82%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
SF F L +TF+VDV A+ RPL+VPL APFTIA+SRL V NVA+R+EL +G VGWGEA
Sbjct: 62 SFGFDALKETFSVDVAAADARPLDVPLAAPFTIASSRLVAVSNVAVRVELRSGAVGWGEA 121
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
PVLP VTAEDQ A+ A AC L+++ A LG++ VA +LPGH FAS RA VEMAL
Sbjct: 122 PVLPSVTAEDQPAALDAAGRACAALEDASAAPLGALLQDVASVLPGHAFASARAGVEMAL 181
Query: 154 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL 213
IDAVA S+ +PLWRLFGG S+++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVGKNL
Sbjct: 182 IDAVANSIRIPLWRLFGGASDSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 241
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDDW+G
Sbjct: 242 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWDG 301
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
L VS +A +K+ V+VAADESCRSL D +KI++GNLA VINIKLAK+G+LGALEII+ R
Sbjct: 302 LRDVSSVAMEKYKVAVAADESCRSLLDAQKIIQGNLAHVINIKLAKLGILGALEIIDAAR 361
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393
+ ++LMIGGMVETR+AMGFAGHL+AGLGCF F+DLDTPLLLSEDPV GYE G +YKF
Sbjct: 362 KANISLMIGGMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVYGGYEAFGPLYKF 421
Query: 394 TNARGHGGFLHWDNIA 409
TNARGHGGFLH DN A
Sbjct: 422 TNARGHGGFLHLDNDA 437
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401824|ref|NP_566605.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] gi|13878121|gb|AAK44138.1|AF370323_1 unknown protein [Arabidopsis thaliana] gi|17104793|gb|AAL34285.1| unknown protein [Arabidopsis thaliana] gi|332642553|gb|AEE76074.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/402 (68%), Positives = 329/402 (81%), Gaps = 10/402 (2%)
Query: 8 LPFNNIKPQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIA 67
L F N P+ PI M+ + FK LT+ FTV V +AENR LNV L++PFTIA
Sbjct: 18 LNFQN-SPKSPITVMSKTS---------KFKTLTENFTVRVLKAENRELNVALLSPFTIA 67
Query: 68 TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALG 127
+SRLD V NVAIRIEL++G VGWGEAP+LP VTAEDQ AMVKA EA E L+E P M LG
Sbjct: 68 SSRLDSVSNVAIRIELNDGFVGWGEAPILPSVTAEDQIMAMVKAREASEFLRELPEMKLG 127
Query: 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP 187
+V + LPGHQFASVRA +EMA+IDA AKSV +PLW+LFGG S+TITTDITIPIVSP
Sbjct: 128 NVLQEIGRFLPGHQFASVRAGMEMAMIDAAAKSVRVPLWKLFGGASSTITTDITIPIVSP 187
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 247
AEA+ LASKYRK+GF TLKLKVGKNLK DIEVL+AIRAVHP SFILDANEGY+ +EAV+
Sbjct: 188 AEASVLASKYRKRGFETLKLKVGKNLKADIEVLQAIRAVHPTCSFILDANEGYQTEEAVK 247
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
VLE L+EM VTPVLFEQPVHRD+WEGL HV+ AK++FGVS+AADESCR L D+KKI++G
Sbjct: 248 VLETLHEMKVTPVLFEQPVHRDNWEGLSHVTRTAKNRFGVSIAADESCRGLTDLKKIIEG 307
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
N+ DV+NIKLAK G+L +LE+IE+ R+SG+ LMIGGMVETRLAMGF+GHL+AGLGCF+FI
Sbjct: 308 NIVDVVNIKLAKTGILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAGLGCFRFI 367
Query: 368 DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
DLDTPLLL++DPV GY+ GAVY+F + GHGG+L W+++A
Sbjct: 368 DLDTPLLLADDPVQGGYKACGAVYEFKDEGGHGGYLQWNDVA 409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 416 | ||||||
| UNIPROTKB|Q81PF7 | 350 | BAS2659 "Mandelate racemase/mu | 0.766 | 0.911 | 0.345 | 1.5e-42 | |
| TIGR_CMR|BA_2850 | 350 | BA_2850 "mandelate racemase/mu | 0.766 | 0.911 | 0.345 | 1.5e-42 | |
| TIGR_CMR|BA_0339 | 369 | BA_0339 "mandelate racemase/mu | 0.754 | 0.850 | 0.258 | 4.2e-31 | |
| UNIPROTKB|Q71WQ8 | 374 | LMOf2365_2493 "N-acylamino aci | 0.658 | 0.732 | 0.299 | 1.8e-25 | |
| UNIPROTKB|P51981 | 321 | ycjG "L-Ala-D/L-Glu epimerase" | 0.706 | 0.915 | 0.301 | 8.1e-23 | |
| TIGR_CMR|SPO_3606 | 321 | SPO_3606 "mandelate racemase/m | 0.536 | 0.694 | 0.351 | 2.9e-20 | |
| TIGR_CMR|SPO_1594 | 368 | SPO_1594 "mandelate racemase/m | 0.701 | 0.793 | 0.257 | 6e-19 | |
| UNIPROTKB|Q81K98 | 368 | BAS4746 "N-acylamino acid race | 0.687 | 0.777 | 0.262 | 4.8e-17 | |
| TIGR_CMR|BA_5107 | 368 | BA_5107 "N-acylamino acid race | 0.687 | 0.777 | 0.262 | 4.8e-17 | |
| UNIPROTKB|O34514 | 371 | menC "o-succinylbenzoate synth | 0.694 | 0.778 | 0.246 | 1.5e-16 |
| UNIPROTKB|Q81PF7 BAS2659 "Mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 117/339 (34%), Positives = 181/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA-----SVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
L + +G LL Q + S +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 389
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_2850 BA_2850 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 117/339 (34%), Positives = 181/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA-----SVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
L + +G LL Q + S +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 389
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_0339 BA_0339 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 85/329 (25%), Positives = 169/329 (51%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA--MVKASE 113
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++ ++K +
Sbjct: 11 IRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTL 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-V 172
A ++ ++P M + + ++ + G + +AA+++A D + K ++ P+++L GG
Sbjct: 71 APALIGQNP-MNIEKIHDMMDNTIYG--VPTAKAAIDIACFDIMGKKLNQPVYQLIGGRY 127
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSS 231
+ I P E AE A+ ++G+ + K+KVG N+KED++ + A+R V D +
Sbjct: 128 HEEFPITHVLSIADPEEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIA 187
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+D N+G+K + L L +G + EQPV DD + + H+ + K + +
Sbjct: 188 IRVDVNQGWK--NSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDLPLM 241
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349
DE + ++++I+ + AD +NIKL K G + A+++ +G+ +G MVE+ +
Sbjct: 242 IDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSV 301
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
A H++ ++L PL ++D
Sbjct: 302 ASSAGFHVAFSKKIITSVELTGPLKFTKD 330
|
|
| UNIPROTKB|Q71WQ8 LMOf2365_2493 "N-acylamino acid racemase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 89/297 (29%), Positives = 151/297 (50%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM-VKASEA 114
+PLIAPF + L+ + I + G G+GE LP T E TA+ +
Sbjct: 13 LPLIAPFKTSYGELNSKDFYIIELVNEEGIRGYGELEAFPLPDYTEETLGTAISIIKQHL 72
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 174
+L + V + + G++ A +AAVE+A+ DA AK+ + L ++ G +
Sbjct: 73 LPILAQKEIRTPEEV-NQMFSWIQGNEMA--KAAVELAVWDAFAKNEKLSLAKMIGAKKD 129
Query: 175 TITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFI 233
+I ++I + AEA +L S+Y +G+ +KLK+ K+DI+ ++A+R P+ S +
Sbjct: 130 SIAVGVSIGVQHSAEALVQLVSQYMDEGYERVKLKIAP--KKDIQFVKAVREKFPNLSLM 187
Query: 234 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI-AKDKFGVSVAAD 292
DAN Y ++ + +L++L + + EQP D+ V H + K + D
Sbjct: 188 ADANSAYNREDFL-LLKELDHFNLE--MIEQPFGTKDF-----VEHAWLQKKLKTRICLD 239
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR-ASGLNLMI--GGMVE 346
E+ RSLDD+K+ +N+KLA+VG G E +++ R S NL++ GGM+E
Sbjct: 240 ENIRSLDDLKQAHMLGSCQAVNLKLARVG--GMSEALKIARYCSDNNLLVWCGGMLE 294
|
|
| UNIPROTKB|P51981 ycjG "L-Ala-D/L-Glu epimerase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 8.1e-23, P = 8.1e-23
Identities = 97/322 (30%), Positives = 148/322 (45%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 64 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L + V AIR PD++ I+DAN
Sbjct: 121 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMV--AIRTAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGVA--MLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 231 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 289 LVPQVS---FADLDGPTWLAVD 307
|
|
| TIGR_CMR|SPO_3606 SPO_3606 "mandelate racemase/muconate lactonizing enzyme family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 86/245 (35%), Positives = 120/245 (48%)
Query: 136 LLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTITTDITIPIVSPAEAAELA 194
LLP + R AV+ AL D +K W L G T T+ + +P A
Sbjct: 76 LLPA---GAARNAVDCALWDLESKRAGKRAWDLAGLPAPGPEITAYTLSLDTPDAMQAQA 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254
+K + LK+K+G +D+ L A+RA PD+ I+DANEG+ + ++ L
Sbjct: 133 AKNAHRPL--LKIKLGT--PDDMPRLEAVRAGAPDAKIIIDANEGWSAEVYADLAPHLVR 188
Query: 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314
+GV L EQP+ E L I ++ V V ADESC + + KG DV+N
Sbjct: 189 LGVA--LVEQPLPAGQDEAL-----IGMER-PVPVCADESCHDRASLAAL-KGKY-DVVN 238
Query: 315 IKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL 373
IKL K G L ALE+ A G ++M+G MV + LAM A ++ G DLD PL
Sbjct: 239 IKLDKTGGLTEALELRRAALAEGYDIMVGCMVGSSLAMAPATLVAQGA---LVTDLDGPL 295
Query: 374 LLSED 378
LL+ED
Sbjct: 296 LLAED 300
|
|
| TIGR_CMR|SPO_1594 SPO_1594 "mandelate racemase/muconate lactonizing enzyme, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 6.0e-19, P = 6.0e-19
Identities = 80/311 (25%), Positives = 145/311 (46%)
Query: 56 LNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+++PL P+ ++ RL + ++ +++E G GWGE H + E
Sbjct: 11 VDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIE 70
Query: 114 ACE--VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
VL P L V + LPGH +A ++ ++MA D ++ +P+ L GG
Sbjct: 71 TMAPFVLGLDPRRLL-DVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIADLMGG 127
Query: 172 VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 230
S T + + S E + +YR++G+ +K+G +++ DI +R + +
Sbjct: 128 GSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIRKPG 187
Query: 231 SFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+L D N G+ Q+A+ V+ ++ V +FEQP E L ++ I + V
Sbjct: 188 EIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQP-----GETLDDIAAI-RPLHSAPV 238
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETR 348
+ DE +L D ++ + LA+V IKL +VG L A + ++ A G+++ + +
Sbjct: 239 SVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATGGSV 298
Query: 349 LAMGFAGHLSA 359
LA A HL+A
Sbjct: 299 LADAEALHLAA 309
|
|
| UNIPROTKB|Q81K98 BAS4746 "N-acylamino acid racemase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 81/308 (26%), Positives = 145/308 (47%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEAC--EVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+TA+ + ++LK S + S+F + ++ A +A +E A+ D AK
Sbjct: 61 VKTALHVLQDFLLPDLLKAEISHPNEVPSLFQHIKR----NRMA--KAGIEGAVWDLYAK 114
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEV 219
L L GG + I + I I + + KY ++G+ K+K+ D E+
Sbjct: 115 RQKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYEL 172
Query: 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
L+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H +
Sbjct: 173 LKEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQ 226
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLN 338
+ K K + DES SL+D + + ++NIK +VG L +++I +
Sbjct: 227 LQK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIP 285
Query: 339 LMIGGMVE 346
+ GGMVE
Sbjct: 286 VWCGGMVE 293
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| TIGR_CMR|BA_5107 BA_5107 "N-acylamino acid racemase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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Score = 230 (86.0 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 81/308 (26%), Positives = 145/308 (47%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEAC--EVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+TA+ + ++LK S + S+F + ++ A +A +E A+ D AK
Sbjct: 61 VKTALHVLQDFLLPDLLKAEISHPNEVPSLFQHIKR----NRMA--KAGIEGAVWDLYAK 114
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEV 219
L L GG + I + I I + + KY ++G+ K+K+ D E+
Sbjct: 115 RQKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYEL 172
Query: 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
L+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H +
Sbjct: 173 LKEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQ 226
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLN 338
+ K K + DES SL+D + + ++NIK +VG L +++I +
Sbjct: 227 LQK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIP 285
Query: 339 LMIGGMVE 346
+ GGMVE
Sbjct: 286 VWCGGMVE 293
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| UNIPROTKB|O34514 menC "o-succinylbenzoate synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 77/313 (24%), Positives = 154/313 (49%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTA--MVKASEACEVL-KE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
T M+K V+ +E P+ S+ G++ A +A +E A+ D A
Sbjct: 62 IGTCLHMLKDFFIPNVVGREFNHPSEVPDSL-----ARYKGNRMA--KAGLESAVWDIYA 114
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
K + L GG + + + + + + + Y+K+G+ +K+K+ +D+E
Sbjct: 115 KKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDVE 172
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD + H
Sbjct: 173 LVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDI--VDH-R 226
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGL 337
H+ K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ + +
Sbjct: 227 HLQKH-LKTAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHM 285
Query: 338 NLMIGGMVETRLA 350
+ GGM+ET ++
Sbjct: 286 QVWCGGMLETGIS 298
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O34508 | AEEP_BACSU | 5, ., 1, ., 1, ., n, 1 | 0.3694 | 0.8173 | 0.9289 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017730001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (420 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00025552001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (647 aa) | • | 0.481 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 416 | |||
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 1e-119 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 2e-61 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 9e-53 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 2e-43 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 9e-40 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 2e-35 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 1e-29 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 8e-29 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 2e-25 | |
| PRK15129 | 321 | PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provi | 2e-25 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 1e-23 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 2e-21 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 3e-16 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 3e-15 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 4e-15 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 9e-14 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 3e-13 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 4e-13 | |
| pfam13378 | 111 | pfam13378, MR_MLE_C, Enolase C-terminal domain-lik | 1e-12 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 2e-12 | |
| cd03327 | 341 | cd03327, MR_like_2, Mandelate racemase (MR)-like s | 2e-10 | |
| cd03329 | 368 | cd03329, MR_like_4, Mandelate racemase (MR)-like s | 1e-09 | |
| cd03325 | 352 | cd03325, D-galactonate_dehydratase, D-galactonate | 1e-08 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 1e-06 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 1e-05 | |
| pfam02746 | 117 | pfam02746, MR_MLE_N, Mandelate racemase / muconate | 4e-05 | |
| cd03322 | 361 | cd03322, rpsA, The starvation sensing protein RpsA | 3e-04 | |
| PRK14017 | 382 | PRK14017, PRK14017, galactonate dehydratase; Provi | 3e-04 | |
| cd03326 | 385 | cd03326, MR_like_1, Mandelate racemase (MR)-like s | 0.001 | |
| cd03323 | 395 | cd03323, D-glucarate_dehydratase, D-Glucarate dehy | 0.003 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-119
Identities = 135/328 (41%), Positives = 190/328 (57%), Gaps = 14/328 (4%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ RP +PL PFTIA + ENV + IEL G G+GEA P VT E ++ +
Sbjct: 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLA 59
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
L L + + LLPG + RAAV++AL D AK + +PL++L+
Sbjct: 60 ALKSVRPALIGGDPR-LEKLLEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLW 116
Query: 170 GGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP 228
GG + + TD TI I +P A A K K+GF LK+K+G +L++DIE +RAIR P
Sbjct: 117 GGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAP 176
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
D+ +DAN+G+ P+EAVE+L +L E+GV L EQPV D +GL ++ +DK +
Sbjct: 177 DARLRVDANQGWTPEEAVELLRELAELGVE--LIEQPVPAGDDDGLAYL----RDKSPLP 230
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ ADESC S D ++ G D INIKL K G+ AL I ++ RA+GL +M+G MVE+
Sbjct: 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVES 290
Query: 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLL 375
L++ A HL+A F+DLD PLLL
Sbjct: 291 SLSIAAAAHLAA--AKADFVDLDGPLLL 316
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The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 2e-61
Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 32/363 (8%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHV--TAEDQQTAM--- 108
P+ VPL PF + + V + I +G VGWGEA E + +
Sbjct: 9 IPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEAEAVLLAPL 68
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+ + ++ + + G + +AV++AL D K++ +P+++L
Sbjct: 69 LIGRDPFDIERIWQKLYRAGFAR------RGGITMAAISAVDIALWDLAGKALGVPVYKL 122
Query: 169 FGGVSNTITTDITIPI---VSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
GG AAE A + GF LKLKVG ED+E +RA+R
Sbjct: 123 LGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALR 182
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++DAN G+ +EA+ + L E G+ E+P+ DD EGL +
Sbjct: 183 EAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLE--WIEEPLPPDDLEGLRELRA---- 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+AA ES + D +++++ D++ LA+V G+ AL+I A G +M+G
Sbjct: 237 ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAA--LAEGFGVMVG 294
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDP-----VLDGYEVSGAVYKFTNAR 397
VE +++ A HL+A L F DL+ PL L++D V + V G + +
Sbjct: 295 PHVEGPISLAAALHLAAALP--NFGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGP 352
Query: 398 GHG 400
G G
Sbjct: 353 GLG 355
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Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 9e-53
Identities = 92/319 (28%), Positives = 141/319 (44%), Gaps = 59/319 (18%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E P+ +PL P A+ L ++V +R+ +G VGW EA
Sbjct: 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT---------------- 44
Query: 111 ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+AAV+MAL D K + +P++ L G
Sbjct: 45 -----------------------------------KAAVDMALWDLWGKRLGVPVYLLLG 69
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPD 229
G + + + + PAE AE A + + GF T KLKVG++ D+ V+ A+R AV D
Sbjct: 70 GYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDD 129
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ +DAN G+ P++A+ L L ++G+ EQP+ DD EG ++ +
Sbjct: 130 AELRVDANRGWTPKQAIRALRALEDLGLD--YVEQPLPADDLEGRAALA----RATDTPI 183
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETR 348
ADES + D + + AD +NIK AK G L A ++ V A GL +M+G M+E+
Sbjct: 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243
Query: 349 LAMGFAGHLSAGLGCFKFI 367
L HL+A L
Sbjct: 244 LGTLANAHLAAALRAVTLP 262
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Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-43
Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 29/308 (9%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM 108
E + +PL PF + L++ E + + + G G+GE P T E TA
Sbjct: 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAW 60
Query: 109 VKASEACEVLKESPA-MALGSVFG---VVAGLL---PGHQFASVRAAVEMALIDAVAKSV 161
+LK+ + LG F V+ L G+ A +A +EMA+ D AK+
Sbjct: 61 -------HILKDYLLPLLLGREFSHPEEVSERLAPIKGNNMA--KAGLEMAVWDLYAKAQ 111
Query: 162 SMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVL 220
L + GG ++I ++I I E + +Y ++G+ +KLK+ D+E L
Sbjct: 112 GQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIKPGW--DVEPL 169
Query: 221 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
+A+R PD + DAN Y + +L++L E G+ ++ EQP+ DD + H + +
Sbjct: 170 KAVRERFPDIPLMADANSAYTLADI-PLLKRLDEYGL--LMIEQPLAADDL--IDH-AEL 223
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNL 339
K + DES +S +D +K ++ +INIK +VG L AL+I ++ + G+ +
Sbjct: 224 QK-LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPV 282
Query: 340 MIGGMVET 347
GGM+E+
Sbjct: 283 WCGGMLES 290
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NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 9e-40
Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 27/339 (7%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKA 111
+++P P A + + V +R+ S+G VG GEA P P E +T A++
Sbjct: 10 VDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDR 69
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
A +L A +G+ ++ + G+ FA +AA+EMAL+DA + + +P+ L GG
Sbjct: 70 YLA-PLLIGRDATNIGAAMALLDRAVAGNLFA--KAAIEMALLDAQGRRLGLPVSELLGG 126
Query: 172 VSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
+ + + S AEA E+ R + F KLK+G +D+ + AI
Sbjct: 127 RVRD-SLPVAWTLASGDTERDIAEAEEMLEAGRHRRF---KLKMGARPPADDLAHVEAIA 182
Query: 225 AVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
D S +D N+ + A+ L +L GV L EQPV R++ +GL +
Sbjct: 183 KALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLR----S 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ V + ADES D ++ + ADV ++K+AK G+ A ++ + A+G+ L G
Sbjct: 237 RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296
Query: 343 GMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
M+E+ + + HL A L F +L PLLL+ED +
Sbjct: 297 TMLESSIGTAASAHLFATLPSLPFGCELFGPLLLAEDLL 335
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This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 100/375 (26%), Positives = 173/375 (46%), Gaps = 25/375 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q E ++VP I P +AT+ + + V +RI +G +G+GE + + +
Sbjct: 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPE 60
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+KA + VL A + ++ + ++ G++FA +AAV+ AL DA A+ + +P
Sbjct: 61 TIKANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRFA--KAAVDTALHDAQARRLGVP 118
Query: 165 LWRLFGGVSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LKEDI 217
+ L GG + D+T + S AEA E + R + F KLK+G +D+
Sbjct: 119 VSELLGGRVRD-SVDVTWTLASGDTDRDIAEAEERIEEKRHRSF---KLKIGARDPADDV 174
Query: 218 EVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ AI +A+ +S +D N + + A+ L +L + GV L EQP ++ E L
Sbjct: 175 AHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVE--LIEQPTPAENREALAR 232
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
++ +F V + ADES D I K + ADV +K K G+L + +I + A+
Sbjct: 233 LT----RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAA 288
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFT 394
G+ L G M+E + + H A F +L PLLL ++ + + +
Sbjct: 289 GIALYGGTMLEGPIGTIASAHFFATFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLP 348
Query: 395 NARGHGGFLHWDNIA 409
G G + D +
Sbjct: 349 QGPGLGVEVDEDKVN 363
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 76/311 (24%), Positives = 131/311 (42%), Gaps = 23/311 (7%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQTAM--VKA 111
++ P +PF + L+ + + I + G G+GE A P T E T ++
Sbjct: 3 VSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIED 62
Query: 112 SEACEVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ KE P+ AL V L G A +A +EMAL D K S L
Sbjct: 63 FFEPNINKEFEHPSEALELVRS-----LKGTPMA--KAGLEMALWDMYHKLPSFSLAYGQ 115
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
G + + + + + + + G+ +KLK+ + ++++ R P
Sbjct: 116 GKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKITPQI--MHQLVKLRRLRFPQ 173
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++DANE Y Q+ L++L + + E+P DD L + +
Sbjct: 174 IPLVIDANESYDLQD-FPRLKELDRYQL--LYIEEPFKIDDISMLDEL----AKGTITPI 226
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETR 348
DES SLDD + +++ VINIK ++G L + I+ + G + IGGM+ET
Sbjct: 227 CLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIDTCKEHGAKVWIGGMLETG 286
Query: 349 LAMGFAGHLSA 359
++ F L++
Sbjct: 287 ISRAFNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 91/363 (25%), Positives = 155/363 (42%), Gaps = 37/363 (10%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
L P + V +R+ +G GWGEA A ++ A ++
Sbjct: 9 VLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYP---GGRPSAVAAAIEDLLAPLLI 65
Query: 119 KESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGGVS- 173
P + ++ + G ++ A AV++AL D K+ +P+++L GG
Sbjct: 66 GRDPL-DIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVR 124
Query: 174 -------NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVL 220
+ D + P E AE A + +GFT +KLKVG ++L+ED+ +
Sbjct: 125 DRVRVYASGGGYDDS-----PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV 179
Query: 221 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
RA+R AV PD ++DAN + EA+ + L E FE+PV DD EGL +
Sbjct: 180 RAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD--LFWFEEPVPPDDLEGLARL-- 235
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 338
+ V +AA E+ + + + +++ D+I + KV G+ A +I + A G+
Sbjct: 236 --RQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVR 293
Query: 339 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL-LSEDPVLDGYEVSGAVYKFTNAR 397
+ G + + + HL+A L F ++ L L ED + E+ +
Sbjct: 294 VAPHGA-GGPIGLAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRP 352
Query: 398 GHG 400
G G
Sbjct: 353 GLG 355
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 71/321 (22%), Positives = 122/321 (38%), Gaps = 94/321 (29%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E + +P PF +A D + V +++ +G VGWGE
Sbjct: 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGE------------------ 42
Query: 111 ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
V + ++MAL D AK++ +PL L G
Sbjct: 43 ----------------------------------VISGIDMALWDLAAKALGVPLAELLG 68
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPD 229
G + IE +RA+R A PD
Sbjct: 69 G--------------GSRDRVPAYGS--------------------IERVRAVREAFGPD 94
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ +DAN + P+EA+ ++ L + G E+P DD EG + + G+ +
Sbjct: 95 ARLAVDANGAWTPKEAIRLIRALEKYG--LAWIEEPCAPDDLEGYAALR----RRTGIPI 148
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 348
AADES ++DD + ++ D++ IK +VG + + ++ A G+ +M+ G +E+
Sbjct: 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208
Query: 349 LAMGFAGHLSAGLGCFKFIDL 369
+ A HL+A L + I+
Sbjct: 209 IGTAAALHLAAALPNDRAIET 229
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 100/322 (31%), Positives = 149/322 (46%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TIT 177
P + G + LLP + R AV+ AL D A+ L +L G T+T
Sbjct: 64 SVVPQLEKGLTREALQKLLPA---GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVT 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR+ PD++ I+DAN
Sbjct: 121 TAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLIS--ERMVAIRSAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
+K + KG +++NIKL K G L AL + RA G LM+G M+ T A+ A
Sbjct: 231 RSSLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + +F DLD P L+ D
Sbjct: 289 LVPQV---RFADLDGPTWLAVD 307
|
Length = 321 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 83/312 (26%), Positives = 123/312 (39%), Gaps = 65/312 (20%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P ++PL P + RL + + +R+E G VGWGE LP
Sbjct: 4 YPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------- 47
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
+ +E AL + A V R
Sbjct: 48 -------------------------------LAFGIESALANLEALLVGFTRPR------ 70
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDS-S 231
N I + +P A E + Y G+ T+KLKVG + +ED+ LRA+R P
Sbjct: 71 NRIPVNALLPAGDAAALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPADAK 129
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN G+ +EA+ LE L + + EQP+ DD L + GV +A
Sbjct: 130 LRLDANGGWSLEEALAFLEALAAGRIEYI--EQPLPPDDLAEL------RRLAAGVPIAL 181
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES R LDD + + +K A +G LE+ E RA G+ ++ +E+ +
Sbjct: 182 DESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIG 241
Query: 351 MGFAGHLSAGLG 362
+G HL+A L
Sbjct: 242 LGALAHLAAALP 253
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-21
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 187 PAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 244
P E AE A + + GF +K+KVG ED+ + A+R AV PD+ ++DAN + +E
Sbjct: 1 PEELAEAARRAVAEAGFRAVKVKVGGGPLEDLARVAAVREAVGPDADLMVDANGAWTAEE 60
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
A+ LE L E+G+ E+PV DD EGL +
Sbjct: 61 AIRALEALDELGLE--WIEEPVPPDDLEGLAELRR 93
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 20/238 (8%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG------WGEAPVLPHV 99
V + R +NVP+ P + + V I + G G + A +
Sbjct: 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFTYTPAALKSLK 60
Query: 100 TAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRAAVEMALIDAV 157
D A++ E AL F ++ GL+ A ++MA DA+
Sbjct: 61 QLLDDMAALLVGEPLAPAELER---ALAKRFRLLGYTGLV-----RMAAAGIDMAAWDAL 112
Query: 158 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKED 216
AK +PL +L GG + + + A E A ++GF +K K+G ED
Sbjct: 113 AKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADED 172
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ V+R+IR AV ++D N+ EA+E + L + G+T + E+P + D+EG
Sbjct: 173 LAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI--EEPTLQHDYEG 228
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 20/203 (9%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--------SPAEAAELASKYR 198
+AV++AL D A+ + +PL RL G +++ P+ E S +
Sbjct: 97 SAVDIALWDLKARLLGLPLARLLGRAHDSV------PVYGSGGFTSYDDDRLREQLSGWV 150
Query: 199 KQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257
QG +K+K+G++ + D + + A R A+ PD+ +DAN Y ++A+ + + GV
Sbjct: 151 AQGIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV 210
Query: 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317
T FE+PV DD GL V + G+ +AA E +L +++++ + DV+ +
Sbjct: 211 T--WFEEPVSSDDLAGLRLVR--ERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADV 266
Query: 318 AKV-GVLGALEIIEVVRASGLNL 339
+ GV G L+ + A ++L
Sbjct: 267 TRCGGVTGFLQAAALAAAHHVDL 289
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIR-AVHPDSSFILDA 236
T+P V A+ E+ +++ G T K+KV G+ L +D+ + A+R A+ PD +DA
Sbjct: 84 TVPAVDAAQVPEVLARF--PGCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDA 141
Query: 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVSVAADES 294
N G+ EAV L G + EQP V +A + + GV +AADES
Sbjct: 142 NGGWSVDEAVAAARALDADGPLEYV-EQPC--------ATVEELAELRRRVGVPIAADES 192
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354
R +D ++ + ADV +K+A +G G +++ GL +++ ++T + +
Sbjct: 193 IRRAEDPLRVARAGAADVAVLKVAPLG--GVRAALDIAEQIGLPVVVSSALDTSVGIAAG 250
Query: 355 GHLSA---------GLGCFKFI--DLDTPLLLSEDPVLDGY 384
L+A GL D+ PLL PV DG+
Sbjct: 251 LALAAALPELDHACGLATGGLFEEDVADPLL----PV-DGF 286
|
Length = 327 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 55/234 (23%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRL--------------FGGVSNTITTDITIPIVSPAEA- 190
AAV A+ D AK+ PLW+L F +++ +T + + I+ +
Sbjct: 111 TAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTPEEALEILRRGQPG 170
Query: 191 ------------------------------AELASKYRKQGFTTLKLKVGKNLKEDIEVL 220
L + QGFT KLKVG +L++DI
Sbjct: 171 KAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC 230
Query: 221 RAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
R R V PD+ ++DAN+ + EA+E +++L E P E+P DD LGH +
Sbjct: 231 RLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFK--PWWIEEPTSPDDI--LGHAA- 285
Query: 280 IAKD--KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 331
I K + VA E C++ K++++ DV+ I ++G G E + V
Sbjct: 286 IRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLG--GVNENLAV 337
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 72/313 (23%), Positives = 118/313 (37%), Gaps = 36/313 (11%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+P AP L + E + +R+ G GWGE LP E + +A +
Sbjct: 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTET----LAEALD 55
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
C L E + G A + +VA L L G
Sbjct: 56 FCRALIEE--------------ITRGDIEAI------DDQLPSVAFGFESALIELESGDE 95
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSS 231
++ + ++ + A L + K GF T K KVG L + ++ + PD +
Sbjct: 96 LPPASNYYVALLPAGDPALLLLRSAKAEGFRTFKWKVGVGELAREGMLVNLLLEALPDKA 155
Query: 232 FI-LDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ LDAN G P EA + L+ L + F E+P+ D +S ++ G ++
Sbjct: 156 ELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDAD-----EMSAFSEA-TGTAI 209
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGAL-EIIEVVRASGLNLMIGGMVETR 348
A DES L + + IK A +G L ++ + GL + + E+
Sbjct: 210 ALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESS 269
Query: 349 LAMGFAGHLSAGL 361
+A+G L+A L
Sbjct: 270 IALGQLARLAAKL 282
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 30/254 (11%)
Query: 20 CQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQV--ENV 77
CQ A + +S + F + E + L AP T A+ Q E
Sbjct: 905 CQAAEHALGILSESSCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGF 964
Query: 78 AIRIELSNGCVGWGE-APVLPHVT----AEDQQTAMV------KASEACEVLKESPAMAL 126
+ + L +G VG+GE AP+ H E+Q ++ K S +LK S + +
Sbjct: 965 ILSLSLEDGSVGFGEVAPLEIHEEDLLDVEEQLRFLLHVIKGAKISFMLPLLKGSFSSWI 1024
Query: 127 GSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL---FGGVSNTITTDITIP 183
S G+ P F SVR +EMA+++A+A L + + N ++
Sbjct: 1025 WSELGIP----PSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSHSVQ 1080
Query: 184 IV-------SPAEAAELASKYRKQGFTTLKLKVGKNLK--EDIEVLRAIR-AVHPDSSFI 233
I SP E A +A K ++GF+ +KLKVG+ + +D V++ +R AV
Sbjct: 1081 ICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELR 1140
Query: 234 LDANEGYKPQEAVE 247
DAN + +EA+E
Sbjct: 1141 ADANRNWTYEEAIE 1154
|
Length = 1655 |
| >gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-12
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
ES SL D +++++ D+I + +V G+ AL+I + A G+ + GM E +
Sbjct: 1 GESLYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAPHGM-EGGIG 59
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEV 386
+ + HL+A L F ++ P LL +D + V
Sbjct: 60 LAASLHLAAALPNFDILEYV-PYLLPDDLLTGPPPV 94
|
This domain appears at the C-terminus of many of the proteins that carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746 domains. EC:4.2.1.40. Length = 111 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 219 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
+ A+R AV PD +DAN + P+EA+ + L G+ E+P+ DD EGL +
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGLL--WIEEPLPPDDLEGLAEL 58
Query: 278 SHIAKDKFGVSVAAD 292
+ + +AA
Sbjct: 59 ----RRATPIPIAAG 69
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 148 AVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA-EAAELASKYRKQGFTTL 205
AV++AL D + K P+++L GG + I + + E + A +Y K+G+ +
Sbjct: 80 AVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGM 139
Query: 206 KLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257
K++ G L++++E++RAIR AV D +LD + A+++ L +
Sbjct: 140 KMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYE- 198
Query: 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313
E+P+ DD EG + G+ ++ E ++ K++++G D++
Sbjct: 199 -LRWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDIL 249
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 341 |
| >gnl|CDD|239445 cd03329, MR_like_4, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRK 199
V++AL D K + +P+ RL GG ++T+ D + SP A+ A + +
Sbjct: 97 GLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEECKA 156
Query: 200 QGFTTLKLK--VGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 256
G+ +KL ++ D++ A+R AV PD + D Y +A+ + L E+G
Sbjct: 157 LGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELG 216
Query: 257 VTPVLFEQP 265
+E P
Sbjct: 217 FF--WYEDP 223
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 368 |
| >gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 45/269 (16%)
Query: 77 VAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS-------- 128
+ ++IE G VGWGE V + + V+A+ ++E +G
Sbjct: 15 LFVKIETDEGVVGWGEPTV-------EGKARTVEAA-----VQELEDYLIGKDPMNIEHH 62
Query: 129 -----VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITI 182
G G G S + ++ AL D K + +P+ +L GG V + + I
Sbjct: 63 WQVMYRGGFYRG---GPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWI 119
Query: 183 PIVSPAEAAELASKYRKQGFTTLK---------LKVGKNLKEDIEVLRAIR-AVHPDSSF 232
P++ AE A R+ GFT +K + K + +E + A+R AV PD
Sbjct: 120 GGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDI 179
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+D + A ++ ++L + E+PV ++ E L ++ + + +A
Sbjct: 180 GVDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIA----ARTTIPIATG 233
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E S D K++++ D+I ++ G
Sbjct: 234 ERLFSRWDFKELLEDGAVDIIQPDISHAG 262
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 352 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 39/315 (12%)
Query: 53 NRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKA 111
RP PL + R E + +R+ G +GWGE AP LP +E + A+
Sbjct: 11 QRPFRQPLQTAHGLWRIR----EGIILRLTDETGKIGWGEIAP-LPWFGSETLEEAL--- 62
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW-RLFG 170
C+ L +F + L P QF +A+E +++ + L
Sbjct: 63 -AFCQQLPGEITPE--QIFSIPDAL-PACQFG-FESALENESGSRSNVTLNPLSYSALLP 117
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRA-IRAVHP 228
+ A + +QG+ T K K+G L++++++ + +
Sbjct: 118 ---------------AGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPA 162
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGV 287
+ LDAN G +EA L+ + F EQP+ D ++ + +S +
Sbjct: 163 GAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLS----QDYQT 218
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
+A DES +L +++ + + IK A G L + + L+ + + ET
Sbjct: 219 PIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR--QFCQQHPLDAVFSSVFET 276
Query: 348 RLAMGFAGHLSAGLG 362
+ A L+A L
Sbjct: 277 AIGRKAALALAAELS 291
|
Length = 320 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 65/254 (25%)
Query: 148 AVEMALIDAVAKSVSMPLWRLFGGVSNTIT-----------------TDITIPIVSPAEA 190
V +A+ A A S+ +PL+R GG++ + DI ++ P A
Sbjct: 112 GVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGA 171
Query: 191 AELASKYRK--QGFTTLK--LK-------VG------KNLKEDIEVL----RAIRAVH-- 227
R + F LK LK VG NLK + E L AI
Sbjct: 172 ESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYE 231
Query: 228 --PDSSFILD--ANEGYK------------PQEAVEVLEKL---YEMGVTPVLFEQPVHR 268
D + LD A+E YK +E +E +L Y + V E P+
Sbjct: 232 PGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI----VSIEDPLSE 287
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALE 327
DDWEG ++ DK + V D + +KK ++ A+ I IK ++G L LE
Sbjct: 288 DDWEGFAELTKRLGDKVQI-VGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLE 346
Query: 328 IIEVVRASGLNLMI 341
I + + +G +I
Sbjct: 347 AINLAKDAGYTAVI 360
|
Length = 423 |
| >gnl|CDD|217212 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 23/122 (18%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
+ P +A + Q V +RIE S G VG GEA A +
Sbjct: 10 GWPLRPIQMAFGTVQQQSLVIVRIETSEGVVGIGEATSYGGR--------------AETI 55
Query: 118 LKESPAMALGSVFGVVAGLLPG-----HQFA----SVRAAVEMALIDAVAKSVSMPLWRL 168
+ G A + ++ A S +AA++MAL D AK +++PL L
Sbjct: 56 KAILDDHLAPLLIGRDAANISDLWQLMYRAALGNMSAKAAIDMALWDLKAKVLNLPLADL 115
Query: 169 FG 170
G
Sbjct: 116 LG 117
|
SCOP reports fold similarity with enolase N-terminal domain. Length = 117 |
| >gnl|CDD|239438 cd03322, rpsA, The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTI------TTDITIPIVSPAEAAELASKYRKQ 200
AAV+MAL D K+ MPL++L GG S + IP E E ++ Q
Sbjct: 86 AAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIP-----ELLEAVERHLAQ 140
Query: 201 GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVE 247
G+ +++++ K + A+R +L D + P +A
Sbjct: 141 GYRAIRVQLPK-------LFEAVREKFGFEFHLLHDVHHRLTPNQAAR 181
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. Length = 361 |
| >gnl|CDD|184455 PRK14017, PRK14017, galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 65/297 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS--EACEVL-KESPA--------MALG 127
++IE G VGWGE PV+ + + V+A+ E + L + P M G
Sbjct: 18 LKIETDEGIVGWGE-PVV------EGRARTVEAAVHELADYLIGKDPRRIEDHWQVMYRG 70
Query: 128 SVF--GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPI 184
+ G + S A ++ AL D K++ +P+ L GG V + I I
Sbjct: 71 GFYRGGPI--------LMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGG 122
Query: 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLK---------EDIEVLRAIR-AVHPDSSFIL 234
PA+ AE A ++GFT +K+ + L+ + + A+R AV P+ +
Sbjct: 123 DRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGV 182
Query: 235 DANEG--YKPQEAV--EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
D + G +KP V + LE M + E+PV ++ E L ++ + +A
Sbjct: 183 DFH-GRVHKPMAKVLAKELEPYRPMFI-----EEPVLPENAEALPEIAAQT----SIPIA 232
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
E S D K++++ D+I L+ G G I E + I M E
Sbjct: 233 TGERLFSRWDFKRVLEAGGVDIIQPDLSHAG--G---ITECRK-------IAAMAEA 277
|
Length = 382 |
| >gnl|CDD|239442 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 38/239 (15%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS------PAE-----AAELAS 195
A++MA+ DAVAK +PL+RL D +P+ + P + E+
Sbjct: 111 GALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDDLGRLRDEMRR 170
Query: 196 KYRKQGFTTLKLKVG-KNLKEDIE-VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLY 253
Y +G+T +K+K+G L ED+ + A+ + + +DAN + + A+ + L
Sbjct: 171 -YLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALA 229
Query: 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK-GNLA-- 310
G+ +E+P D+ ++ D + +A E+ SL D + +++ G +
Sbjct: 230 PYGL--RWYEEPGDPLDYALQAELA----DHYDGPIATGENLFSLQDARNLLRYGGMRPD 283
Query: 311 -DVINIKLA-KVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL-----SAGLG 362
DV+ G+ L +++V+ A G + R GHL +AGLG
Sbjct: 284 RDVLQFDPGLSYGLPEYLRMLDVLEAHGWS--------RRRFFPHGGHLMSLHIAAGLG 334
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 385 |
| >gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 34/140 (24%)
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGG--------------VSNTITTDITIP---- 183
V A E+AL+D + +++ +P+ L GG + TD+ P
Sbjct: 102 TVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTDLPYPWFRD 161
Query: 184 ----------IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSF 232
+V A AA + GF + KLK G E+ IE ++A+ P +
Sbjct: 162 RWGEALTPEGVVRLARAA-----IDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARL 216
Query: 233 ILDANEGYKPQEAVEVLEKL 252
LD N + + A+ + ++L
Sbjct: 217 RLDPNGAWSLETAIRLAKEL 236
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 99.97 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.94 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.9 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.87 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.72 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.72 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.67 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.58 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.42 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.3 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.27 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.08 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.06 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 98.84 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.81 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.68 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.62 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 98.17 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.53 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.23 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.16 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.1 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.94 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.83 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.81 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.8 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 96.78 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.76 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.74 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.72 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.62 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.5 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 96.38 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.31 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 96.15 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.03 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 95.98 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 95.94 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.81 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 95.46 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.17 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 95.13 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 95.08 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 94.96 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 93.81 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 93.7 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.97 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 92.92 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.83 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 92.7 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 92.64 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 92.28 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 91.85 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 91.72 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.49 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 91.47 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 91.44 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 91.39 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.25 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 91.11 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 90.94 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 90.91 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 90.91 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.76 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.75 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 90.74 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 90.69 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 90.64 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 90.3 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 90.23 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 90.13 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.97 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.35 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 89.13 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.03 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 89.01 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 88.77 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 88.76 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 88.71 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.64 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 88.5 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 88.39 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 88.36 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 88.12 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 88.11 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 87.4 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 87.35 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 87.27 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 87.14 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 86.93 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 86.88 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 86.55 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 86.43 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 86.36 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 86.31 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 86.25 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 85.92 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 85.91 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 85.31 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 85.28 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 84.96 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 84.93 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 84.4 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 84.28 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 84.11 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 84.09 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 83.8 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 83.67 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 83.55 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 83.42 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 82.98 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 82.84 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 82.39 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 82.34 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 82.25 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 82.23 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 82.16 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 81.71 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 81.67 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 81.55 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.35 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 81.22 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 81.11 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 81.09 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 80.91 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 80.44 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 80.38 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 80.35 |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-72 Score=559.28 Aligned_cols=358 Identities=25% Similarity=0.392 Sum_probs=321.2
Q ss_pred EeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHH-HHHHHHhCCCCC
Q 014886 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (416)
Q Consensus 48 I~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (416)
|++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+. |.+++++...+...++ .++|.|+|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999875 4566666554444444 478999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH-HcCC
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-KQGF 202 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~-~~G~ 202 (416)
+++.+++.+.....+. ..+++|||+||||++||.+|+|+|+||||. ++++++|++++..++++..++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999998887654443 347999999999999999999999999997 67899999888777776666666655 5899
Q ss_pred CEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 203 TTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 203 ~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
+.||+|+| .++++|+++|+++|+. +++++|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 99999998 4789999999999997 7999999999999999999999999999987 59999999999999999875
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaa 359 (416)
++++||++||+++++.+++++++.+++|++|+|++|+| ++++++++++|+++|+++++||+++|+|+.++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 360 GLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 360 a~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++..+ .|+++++.+.++++.+++.++||++.+|++||||+++|++.+++|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~~~~~ 367 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVNFYRR 367 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHHHhhc
Confidence 9998777 57777766667888888999999999999999999999999999975
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-71 Score=554.15 Aligned_cols=356 Identities=26% Similarity=0.398 Sum_probs=321.9
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
||++|+++++++|++.||.++.++.+.++.++|||+|++|.+||||+.+.+ ++++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998753 455565554444454 47899999999
Q ss_pred CCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC-
Q 014886 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG- 201 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G- 201 (416)
.+++.+|+.+.+...++ ..+++||||||||++||.+|+|+|+||||+ ++++++|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999887654443 347999999999999999999999999997 67899999888778888888888999999
Q ss_pred CCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|+.||+|+| .++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHHHHh
Confidence 999999999 4788999999999998 6799999999999999999999999999987 59999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 359 AGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 359 aa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
+++++..+ +|++++..+.++++.+++.++||++.+|++||||+++|++.+++
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~ 365 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVRR 365 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhcC
Confidence 99998766 67777666667888788899999999999999999999999875
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=534.25 Aligned_cols=348 Identities=20% Similarity=0.269 Sum_probs=304.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 69999999999999999999999998889999999999999999999653 3344443333344568999999975 5
Q ss_pred HHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
.+++++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++++|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666766665432 12 22246899999999999999999999999999988999999988888889999999999999
Q ss_pred CCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|++||+|+| .+++.|+++|+++|+. ||++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 999999998 4688999999999998 7999999999999999999999999999987 59999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + .++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 78999999999999999999999999999999999998 999999999999999999999852 2 468999
Q ss_pred ccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
+++++..++|+.. +..+++..++.++||++.+|++||||+++|++++++|+
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~ 355 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVRKYL 355 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHHhhC
Confidence 9999887776421 22344566789999999999999999999999999985
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=531.06 Aligned_cols=347 Identities=25% Similarity=0.401 Sum_probs=309.2
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCCCCCHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (416)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. |++++++...+...+++ +.|.|+|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5789999999999999999999999999999999999999999864 56777776655555554 68999999999999
Q ss_pred HHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCH-HHHHHHHHHHHHcCCCEEE
Q 014886 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLK 206 (416)
Q Consensus 128 ~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~K 206 (416)
.+++.+.+ ..++ +.+++||||||||++||.+|+|+|+||||.++++++|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99998876 3443 458999999999999999999999999998889999999887765 8899999999999999999
Q ss_pred EecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 207 iKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
+|++ ++.|+++|++||+..++++|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~--~~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIK--PGWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecC--hHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 9996 4689999999999855999999999999999985 7999999987 59999999999999999874 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-cCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 366 FI-DLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 366 ~~-e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
+. +++... .+.+|++.+++.++||++.+|++||||+++|++.+++
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~~ 354 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALKK 354 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhcC
Confidence 43 443322 3456787778899999999999999999999999875
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-68 Score=533.26 Aligned_cols=350 Identities=19% Similarity=0.228 Sum_probs=302.6
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC-CC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (416)
||++|+++++.+|++.||+++.++...++.++|||+|++|++||||++.. .+... .+.++++.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999887777789999999999999999997531 12222 23457888888877 57
Q ss_pred HHHHHHHHHhhCC--CC-----------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec--------
Q 014886 126 LGSVFGVVAGLLP--GH-----------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 183 (416)
Q Consensus 126 ~~~~~~~l~~~~~--g~-----------~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~-------- 183 (416)
.+.+|+.|.+... ++ ....+++||||||||++||.+|+|||+||||+ ++++++|+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 7888988875431 11 13568999999999999999999999999996 77899998642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 014886 184 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (416)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~ 248 (416)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|++.+++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 2477888899988885 699999999984 6789999999999987799999999999999999999
Q ss_pred HHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHH
Q 014886 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~ 327 (416)
+++|++ ++ .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++
T Consensus 233 ~~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 87 49999998 8999999875 78999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChh
Q 014886 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (416)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~ 406 (416)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.+++.++||++.+|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999998765 3432232223445567788999999999999999999999
Q ss_pred hHHhhhc
Q 014886 407 NIAWGLQ 413 (416)
Q Consensus 407 ~l~~~~~ 413 (416)
.+++|.+
T Consensus 384 ~l~~~~~ 390 (395)
T cd03323 384 KLAKAHE 390 (395)
T ss_pred HHHHHHH
Confidence 9999964
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-68 Score=528.42 Aligned_cols=339 Identities=22% Similarity=0.308 Sum_probs=294.3
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (416)
||++|+++.+++|++.||..+..++..++.++|||+| +|++||||+.. .++....+ .+.+.|.|+|+|+.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~~-----~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTYA-----DAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCCC-----hHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999997666556678899999997 79999998632 23222222 1347899999999999
Q ss_pred HHHHHHHHhhC---C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHHHHc
Q 014886 127 GSVFGVVAGLL---P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 200 (416)
Q Consensus 127 ~~~~~~l~~~~---~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~ 200 (416)
+.+|+.|.+.. . +.....|++||||||||++||.+|+|||+||||.++++++|++++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 99999997642 1 1222368999999999999999999999999998889999988653 3678899999999999
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 201 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 201 G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
||++||+|+|.++++|+++|+++|++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999987 59999999999999999975
Q ss_pred hhhcc--CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 280 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 280 ~~r~~--~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
+ +++||++||++++.++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7899999999999999999999999999999999998 99999999999999999999984 358899
Q ss_pred HHccCCCCceecCcCCc-ccccCCCCcceeEeCcEEEcCC-CCCcccccCh
Q 014886 357 LSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHW 405 (416)
Q Consensus 357 laaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~-~PGlGield~ 405 (416)
+++++||+.+.|+..+. .+.++++.+++.++||++.+|+ +||||+++|+
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 99999998777754322 2334566677888999999987 7999999997
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=527.88 Aligned_cols=343 Identities=18% Similarity=0.201 Sum_probs=293.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (416)
|||++|+++.+ . ..++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999754 1 1135689999999999999998532 1221 122223 3588999999999
Q ss_pred CHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHc
Q 014886 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (416)
Q Consensus 125 ~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (416)
+++.+|+.+.+.. ++.....+++||||||||++||.+|+|||+||||+ ++++++|.+....+++++.+++++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~ 141 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLEL 141 (404)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999996631 23233458999999999999999999999999996 6789999765555788888999999999
Q ss_pred CCCEEEEecCC-C----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHH
Q 014886 201 GFTTLKLKVGK-N----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (416)
Q Consensus 201 G~~~~KiKvG~-~----------------------------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~ 244 (416)
||++||+|+|. + ++.|+++|++||+. |+++.|++|+|++|++++
T Consensus 142 Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~ 221 (404)
T PRK15072 142 GYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIE 221 (404)
T ss_pred CCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHH
Confidence 99999999972 1 14457899999997 799999999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++
T Consensus 222 A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit 295 (404)
T PRK15072 222 AARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT 295 (404)
T ss_pred HHHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH
Confidence 9999999999987 59999999999999999975 78999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
++++++++|+++|+++++|++. +|+++.++++|+++++|++.++|+..+..+..+++..++.++||++.+|++||||++
T Consensus 296 ~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~ 375 (404)
T PRK15072 296 HLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVD 375 (404)
T ss_pred HHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCee
Confidence 9999999999999999999875 699999999999999999887777654333456777788999999999999999999
Q ss_pred cChhhHHhhhc
Q 014886 403 LHWDNIAWGLQ 413 (416)
Q Consensus 403 ld~~~l~~~~~ 413 (416)
+|++++++|..
T Consensus 376 ~d~~~l~~~~~ 386 (404)
T PRK15072 376 FDEKLAAKYPY 386 (404)
T ss_pred ECHHHHhhCCC
Confidence 99999999853
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=519.83 Aligned_cols=345 Identities=19% Similarity=0.265 Sum_probs=297.7
Q ss_pred EEeEEEEEEEEeccccceee----cCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~----a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
||++|+++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . .. .....+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~~--~~~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---TD--PALVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---hH--HHHHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 11 1112245789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC-------CCHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELAS 195 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~-------~~~~~~~~~~~ 195 (416)
+.+++.+|+.|.+...+.. ..|++||||||||++||.+|+|||+||||.+++|++|++++. .+++++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~ 152 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT-DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAE 152 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHH
Confidence 9999999999987655532 358999999999999999999999999998889999987632 37889999999
Q ss_pred HHHHcCCCEEEEecCCC--hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHH
Q 014886 196 KYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (416)
Q Consensus 196 ~~~~~G~~~~KiKvG~~--~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (416)
+++++||++||+|++.+ +++|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++++ .|+|||++++|++
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~ 230 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGF--FWYEDPLREASIS 230 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCC--CeEeCCCCchhHH
Confidence 99999999999998743 68999999999997 8999999999999999999999999999987 4999999999999
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~-~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
++++|++ ++++||++||++++ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 231 ~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------ 300 (368)
T cd03329 231 SYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------ 300 (368)
T ss_pred HHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------
Confidence 9999874 78999999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHccCCCCceecC--cCCcccccC-----CCCcceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 351 MGFAGHLSAGLGCFKFIDL--DTPLLLSED-----PVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~--~~p~~~~~d-----~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
.++++|++++++|..+.|. ..|.....+ ...+++.++||++.+|++|||||++|++++++|
T Consensus 301 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 368 (368)
T cd03329 301 GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIERN 368 (368)
T ss_pred HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHhhC
Confidence 4688999999999888773 333321111 112345568999999999999999999999876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=520.83 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=289.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++. + ..++|||+|++|++||||+...+ +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 799999998762 1 13899999999999999986321 1222 2223356899999999999
Q ss_pred HHHHHHHHHhh--CCCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~--~~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
++.+|+.+... .++. ....|++|||||||||+||.+|+|||+||||+ ++++++|.+++..+++++.+++++++++|
T Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~G 139 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERG 139 (382)
T ss_pred HHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998652 2232 23458999999999999999999999999996 67899998877778999999999999999
Q ss_pred CCEEEEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 202 FTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 202 ~~~~KiKvG~---------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
|++||+|+|. ++++|+++|+++|+. ||+++|++|+|++|+.++|+++++.|+++++ .|||||++++|+
T Consensus 140 f~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 217 (382)
T PRK14017 140 FTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRP--MFIEEPVLPENA 217 (382)
T ss_pred CCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCC--CeEECCCCcCCH
Confidence 9999999963 357899999999998 7999999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++|||+++.+++.++++.+++|++|+|++|+| ++++++++++|+++|+++++|++.+ +++
T Consensus 218 ~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~ 292 (382)
T PRK14017 218 EALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIA 292 (382)
T ss_pred HHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHH
Confidence 99999975 78999999999999999999999999999999999998 9999999999999999999999865 899
Q ss_pred HHHHHHHHccCCCCceecCc--CCccccc---CCCC--cceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 351 MGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+++++|++++++++.+.|.. ..+.... +.+. .++.++||++.+|++|||||++|+++|++|..
T Consensus 293 ~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l~~~~~ 362 (382)
T PRK14017 293 LAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKVRERAK 362 (382)
T ss_pred HHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHHHHhhh
Confidence 99999999999887654421 1111111 1122 46788999999999999999999999999865
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=513.49 Aligned_cols=344 Identities=20% Similarity=0.258 Sum_probs=288.9
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECC---C--ceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~---G--~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
++++.+++|+++||.++.++++.++.++|||+||+ | ++||||+.. + +...... ..+.+.|.|+|+||.+
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~----~~~~~~~-i~~~~~p~LiG~dp~~ 76 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-G----RYAQGGL-LRERFIPRLLAAAPDS 76 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-C----chhHHHH-HHHHHHHHhcCCChHH
Confidence 56778889999999999999999999999999999 9 999999862 1 1111111 1234789999999984
Q ss_pred ----------HHHHHHHHHhhC--CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CceeeeeEeec---
Q 014886 126 ----------LGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP--- 183 (416)
Q Consensus 126 ----------~~~~~~~l~~~~--~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~------~~~v~~~~~~~--- 183 (416)
++.+|+.|.... .++ ....|+|||||||||++||.+|+|||+||||+ ++++++|++.+
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~ 156 (385)
T cd03326 77 LLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYY 156 (385)
T ss_pred hhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCC
Confidence 499999996531 222 22458999999999999999999999999985 35899998754
Q ss_pred -CCCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 184 -IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 184 -~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
..+++++.+++++++++||++||+|+|. ++++|+++|+++|+. ||++.|++|+|++||.++|+++++.|+++++ .
T Consensus 157 ~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~ 234 (385)
T cd03326 157 PGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--R 234 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--C
Confidence 3467888899999999999999999984 788999999999997 8999999999999999999999999999987 5
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEeCCCCCc-hHHHHHHHHHHHHc
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVVRAS 335 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~----d~v~~k~~k~G-i~~~l~i~~~A~~~ 335 (416)
|||||++++|++++++|++ ++++||++||+++++.+++++++.+++ |++|+|++|+| ++++++++++|+++
T Consensus 235 ~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~ 310 (385)
T cd03326 235 WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAH 310 (385)
T ss_pred EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHc
Confidence 9999999999999999975 789999999999999999999999987 99999999997 99999999999999
Q ss_pred CCc---EEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 336 GLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 336 gi~---~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
|++ +++|+ +..+++|+++++++ .++|.........+.+.+++.++||++.+|++||||+|+|++++++|.
T Consensus 311 gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~~~~~ 383 (385)
T cd03326 311 GWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELAAEMR 383 (385)
T ss_pred CCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHHHHHh
Confidence 998 77765 35688999998885 233321111101123346678899999999999999999999999987
Q ss_pred c
Q 014886 413 Q 413 (416)
Q Consensus 413 ~ 413 (416)
+
T Consensus 384 ~ 384 (385)
T cd03326 384 E 384 (385)
T ss_pred c
Confidence 4
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-65 Score=507.27 Aligned_cols=340 Identities=26% Similarity=0.379 Sum_probs=301.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (416)
||++|+++++++|++.| .++.+.++.++|||+|++|++||||+.+.+. .+. ....+++ ++|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5566778999999999999999999987542 222 2333454 899999999999
Q ss_pred HHHHHHHHHhhCCCC----hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCC--CHHHHHHHHHHHH
Q 014886 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 198 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~----~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~--~~~~~~~~~~~~~ 198 (416)
++.+|+.+.+...++ ....+++||||||||++||.+|+|+|+||||. ++++++|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 999999997654322 23568999999999999999999999999998 7899999887655 6888999999999
Q ss_pred HcCCCEEEEecCCC------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 199 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 199 ~~G~~~~KiKvG~~------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++||+.||||+|.+ +++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++++
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999954 68999999999997 7899999999999999999999999999987 599999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++|+| ++++++++++|+++|+++++|++.+ +|+
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999875 68999999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 351 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
.++++|++++++++.++|++.+. .+..+++.+++.++||++.+|++||||+|
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999998888876543 23345667788999999999999999986
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-65 Score=506.96 Aligned_cols=335 Identities=17% Similarity=0.185 Sum_probs=287.0
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (416)
||++|+++.. .| . ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~~----~---------~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-CP----G---------RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-CC----C---------CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999654 22 1 246899999999999999985321 1222 222333 4789999999999
Q ss_pred HHHHHHHHHhh--CC-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGL--LP-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~--~~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
++.+|+.|... +. +.....+++||||||||++||.+|+|||+||||+ ++++++|.+.+..+++++.+++++++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~G 141 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQG 141 (361)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998653 12 2222458999999999999999999999999996 67899997766667888889999999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
|++||+|+ +++|+++|+. |+++.|++|+|++||+++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 142 f~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~- 211 (361)
T cd03322 142 YRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRL--FWMEDPTPAENQEAFRLIRQ- 211 (361)
T ss_pred CCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCC--CEEECCCCcccHHHHHHHHh-
Confidence 99999998 8899999997 7899999999999999999999999999987 49999999999999999975
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHH
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hla 358 (416)
++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|++
T Consensus 212 ---~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~la 288 (361)
T cd03322 212 ---HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLD 288 (361)
T ss_pred ---cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 999999999999999999999987 5999999999999
Q ss_pred ccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++++.+.|+........+++.+++.++||++.+|++||||+++|++++++|..
T Consensus 289 a~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~~~~~ 343 (361)
T cd03322 289 LWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAAKFPY 343 (361)
T ss_pred hhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHhhCCC
Confidence 9998876666432111224666778899999999999999999999999999953
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=501.52 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=282.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (416)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 146899999999999999997521 12222 2234558999999999999
Q ss_pred HHHHHHHHhh--CCCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCC
Q 014886 127 GSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGF 202 (416)
Q Consensus 127 ~~~~~~l~~~--~~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 202 (416)
+.+++.+... ..++ ....+++||||||||++||.+|+|+|+||||+ ++++++|.+++..+++++.+++++++++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf 139 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGF 139 (352)
T ss_pred HHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998542 2232 23468999999999999999999999999995 678999988877788888899999999999
Q ss_pred CEEEEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHH
Q 014886 203 TTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (416)
Q Consensus 203 ~~~KiKvG~---------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (416)
++||+|+|. ++++|+++|+++|+. +|++.||+|+|++|++++|+++++.|+++++ .|||||++++|++
T Consensus 140 ~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~ 217 (352)
T cd03325 140 TAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRL--LFIEEPVLPENVE 217 (352)
T ss_pred CEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCC--cEEECCCCccCHH
Confidence 999999983 467899999999997 7999999999999999999999999999987 4999999999999
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.
T Consensus 218 ~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~ 292 (352)
T cd03325 218 ALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIAL 292 (352)
T ss_pred HHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHH
Confidence 9999975 78999999999999999999999999999999999997 99999999999999999999997 899999
Q ss_pred HHHHHHHccCCCCceecCc--CCccccc----CCCC-cceeEeCcEEEcCCCCCcccccC
Q 014886 352 GFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 352 ~a~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~~~~p~~PGlGield 404 (416)
++++|++++++++.+.|+. .+....+ +++. .++.++||++.+|++||||+++|
T Consensus 293 ~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 293 AASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999999887655432 2211111 1333 57889999999999999999987
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=494.23 Aligned_cols=319 Identities=19% Similarity=0.279 Sum_probs=272.9
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (416)
||++|+++. ..++|||+|++|++||||+.+. . .. ...+ +.+.|.|+|++|.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 789999853 2589999999999999998431 1 11 1223 34889999999999
Q ss_pred HHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec-CCCHHHHHHHHHHHHH
Q 014886 126 LGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-IVSPAEAAELASKYRK 199 (416)
Q Consensus 126 ~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 199 (416)
++.+|+.|.+.. .+ .....+++||||||||++||.+|+|||+||||+ ++++++|++.. ..+++++.++++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~ 133 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLK 133 (341)
T ss_pred HHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999996632 12 222358999999999999999999999999996 66899998753 4678889999999999
Q ss_pred cCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 200 QGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 200 ~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
+||++||+|+|. ++++|+++|++||+. ||++.|++|+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 134 ~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 211 (341)
T cd03327 134 EGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDI 211 (341)
T ss_pred cCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCH
Confidence 999999999973 357999999999997 8999999999999999999999999999987 599999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 212 ~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------ 281 (341)
T cd03327 212 EGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------ 281 (341)
T ss_pred HHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------
Confidence 99999975 78999999999999999999999999999999999997 99999999999999999999973
Q ss_pred HHHHHHHHccCCCCceecCcC--Ccc----cccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 351 MGFAGHLSAGLGCFKFIDLDT--PLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~~--p~~----~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
.++++|++++++|+.+.|+.. +.. +..+++.+++.++||++.+|++||||+|+|
T Consensus 282 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 458899999999987777532 110 124556667788999999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=499.33 Aligned_cols=355 Identities=28% Similarity=0.392 Sum_probs=302.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccC-cccHHHHHHHHHHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~-~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
|+|.+|+.+++.+|+..||..+.++.+.+..++|+|+|++|++||||+.+..... .+. ... ..+.+.++|+++.
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~---~~~--~~~~~~l~g~d~~ 75 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEE---AEA--VLLAPLLIGRDPF 75 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccchhh---hhH--HHHHHHhcCCCHH
Confidence 5788999999999999999999888888999999999999999999999853221 111 111 1468899999999
Q ss_pred CHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeecC-C-CHHHHHHHHHHHH
Q 014886 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI-V-SPAEAAELASKYR 198 (416)
Q Consensus 125 ~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~~-~-~~~~~~~~~~~~~ 198 (416)
+++.+|+.+.... .++...++++|||+||||++||.+|+|||+||||.. +.+++|.+... . +++...+.++.+.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~ 155 (372)
T COG4948 76 DIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALV 155 (372)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987642 122234689999999999999999999999999986 47888877764 2 4555566666667
Q ss_pred HcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHH
Q 014886 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (416)
Q Consensus 199 ~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (416)
++||+.+|+|+| .+.+.|+++|+++|++ +++++|++|+|++||+++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~ 233 (372)
T COG4948 156 ELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRE 233 (372)
T ss_pred hcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHH
Confidence 799999999999 4456999999999998 6699999999999999999999999999986 59999999999999999
Q ss_pred hHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 014886 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (416)
Q Consensus 277 l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~ 355 (416)
|++ .+.+||++||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++
T Consensus 234 l~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~ 307 (372)
T COG4948 234 LRA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAAL 307 (372)
T ss_pred HHh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHH
Confidence 975 55699999999999999999999999999999999998 9999999999998888877776 5999999999
Q ss_pred HHHccCCCCceecCcCCcccc-----cCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 356 HLSAGLGCFKFIDLDTPLLLS-----EDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 356 hlaaa~~~~~~~e~~~p~~~~-----~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
|++++.+++ .+++++..+. .+++.+++..+||++.+|++||||+++|++.+++|....
T Consensus 308 hla~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~~~~~~~~ 370 (372)
T COG4948 308 HLAAALPNF--GDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDALAKYRVRY 370 (372)
T ss_pred HHhhccchh--hhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHHHhccccc
Confidence 999988654 3444444332 236777778899999999999999999999999998654
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=501.35 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=276.9
Q ss_pred EEEeEEEEEEEEeccccceeecCc--eeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~--~~~~~~~~iV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
+||++|+++.+++|+++|+..+.. +....+.++|||+||+ |++||||+..... +.+. ....++.++|.|+|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~---~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI---VCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH---HHHHHHHHHHHhCCCC
Confidence 589999999999999999855433 3344578999999999 9999999864321 1122 2222355899999999
Q ss_pred CCCHHHHHHHHHhhCC--------C---ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-C-----------------
Q 014886 123 AMALGSVFGVVAGLLP--------G---HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-S----------------- 173 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~--------g---~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~----------------- 173 (416)
+.+++.+++.+++.+. + .....|++||||||||++||.+|+|||+||||. +
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988544444433221 1 111358999999999999999999999999994 2
Q ss_pred ------------------------ceeeeeEee-c--CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh
Q 014886 174 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226 (416)
Q Consensus 174 ------------------------~~v~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~ 226 (416)
+++++|.+. + ..+++++.+++++++++||++||+|+|.++++|+++|+++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467788642 2 3477889999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC---CCeEEeCCCCCCHHHHH
Q 014886 227 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 302 (416)
Q Consensus 227 -g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~---~iPIa~dEs~~~~~d~~ 302 (416)
||++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++ ++ ++||++||++++.++++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 8999999999999999999999999999987 59999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC---------CCCceecCcCC
Q 014886 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL---------GCFKFIDLDTP 372 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~---------~~~~~~e~~~p 372 (416)
++++.+++|++|+|++|+| ++++++++++|+++|+++++|+ ++++.++++|.++.+ ++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 567766666544321 121 233211
Q ss_pred cccccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 373 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 373 ~~~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
+..+++.+++.++||++.+|++||||+|+.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 113445677899999999999999999973
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=500.40 Aligned_cols=349 Identities=18% Similarity=0.227 Sum_probs=286.5
Q ss_pred EEeEEEEEEEEeccccceeecCc-eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~-~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
-|+.+++.++..- ..++-...| .-+..+.++|+|+|++|++||||+.+ .+... ..++.++|.|+|+++.+
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 5 VVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKPLGE 75 (441)
T ss_pred EEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCCHHH
Confidence 4677777666322 122222221 12256899999999999999999853 23222 22356899999999999
Q ss_pred HHHHHHHHHhhCC-------CCh------hhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CceeeeeEe---ec----
Q 014886 126 LGSVFGVVAGLLP-------GHQ------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP---- 183 (416)
Q Consensus 126 ~~~~~~~l~~~~~-------g~~------~~~a~said~ALwDl~gk~~g~pl~~LLG-g~-~~~v~~~~~---~~---- 183 (416)
++.+|+.|..... +.. ...|+|||||||||++||.+|+|||+||| |. ++++++|.+ ++
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999966431 211 23689999999999999999999999999 64 678998854 11
Q ss_pred ----------------------CCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCC
Q 014886 184 ----------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEG 239 (416)
Q Consensus 184 ----------------------~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~ 239 (416)
..+++++.++++++++ +||++||+|+|. +.++|+++|+++|++++++.|++|+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1367888888888776 599999999995 5689999999999988899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++.+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 6 49999999998 899999874 78999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccc--cCCCCcceeEeCcEEEc
Q 014886 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 316 k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~~~~ 393 (416)
|+.++|++++++++++|+++|+++++|++.+++++.++++|+++++++.. .+++.++.+. ++++++++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99766799999999999999999999998889999999999999988632 3444443222 35667778899999999
Q ss_pred CCCCCcccccChhhHHhhh
Q 014886 394 TNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 394 p~~PGlGield~~~l~~~~ 412 (416)
|++|||||++|++++++|.
T Consensus 388 p~~PGLGve~d~~~l~~~~ 406 (441)
T TIGR03247 388 PDKPGLGVEIDMDAVDAAH 406 (441)
T ss_pred CCCCCCCceeCHHHHHHHH
Confidence 9999999999999999983
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=470.25 Aligned_cols=317 Identities=23% Similarity=0.317 Sum_probs=277.9
Q ss_pred EEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHH
Q 014886 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (416)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (416)
|++++|+++||.++.++++.++.++|||+|++|++||||+.+. |.+++++...+...+.+ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4688999999999999999999999999999999999999864 55667766654444544 5889999 999999999
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
+.+... .++ +.+++||||||||++||..|+|+|+||||.++++++|.+++..+++++.+++++++++||+.||+|++
T Consensus 80 ~~~~~~-~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRSL-KGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHHc-cCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 988653 443 35799999999999999999999999999888999999988889999999999999999999999996
Q ss_pred CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 211 ~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
. +.|+++++++|+.+|+++|++|+|++|+.+++ +++++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 3 67999999999988899999999999999986 56899999987 59999999999999999975 7899999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecC
Q 014886 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL 369 (416)
Q Consensus 291 ~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~ 369 (416)
+||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|+.++++|+|++.++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765433343
Q ss_pred c-CCcccccCCCCcc
Q 014886 370 D-TPLLLSEDPVLDG 383 (416)
Q Consensus 370 ~-~p~~~~~d~~~~~ 383 (416)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 3234455555443
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=478.03 Aligned_cols=315 Identities=17% Similarity=0.232 Sum_probs=258.7
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhC--CCC--hhhHHHH
Q 014886 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVRA 147 (416)
Q Consensus 72 ~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~--~~~~a~s 147 (416)
+.++.++|||+|++|++||||+.. ++.. .....+.+.|.|+|+++.+++.+|++|.+.. .++ ....|++
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~-----~~~~--~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~s 126 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTA-----GEMG--AFIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTIS 126 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCC-----cHHH--HHHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHH
Confidence 456789999999999999999643 1221 1111234789999999999999999997632 222 2235899
Q ss_pred HHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC--C-----ChhHHHHH
Q 014886 148 AVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDIEV 219 (416)
Q Consensus 148 aid~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG--~-----~~~~d~~~ 219 (416)
|||||||||+||.+|+|||+||||. ++++++|.+.. .++ . +.++||+++|+|++ + ++++|+++
T Consensus 127 aIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~ 197 (394)
T PRK15440 127 CVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNAAM 197 (394)
T ss_pred HHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHHHH
Confidence 9999999999999999999999996 67899997532 222 1 23689999999994 2 45899999
Q ss_pred HHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCH
Q 014886 220 LRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298 (416)
Q Consensus 220 v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~ 298 (416)
|+++|++ |+++.||+|+|++||+++|++++++|+++++ .|||||++++|++++++|++. ..+++||+.||+++++
T Consensus 198 v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l--~wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~~~ 273 (394)
T PRK15440 198 VADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGL--KWIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEATL 273 (394)
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--cceeCCCCcccHHHHHHHHHh--CCCCCceecCCCccCH
Confidence 9999997 8999999999999999999999999999997 499999999999999999851 1244899999999999
Q ss_pred HHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC--Cc--
Q 014886 299 DDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-- 373 (416)
Q Consensus 299 ~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~--p~-- 373 (416)
++++++++.+++|++|+|++||| +++++|++++|+++|+++++|+. .++++|++++.+|+.++|+.. |.
T Consensus 274 ~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~ 347 (394)
T PRK15440 274 QGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDAD 347 (394)
T ss_pred HHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcccc
Confidence 99999999999999999999997 99999999999999999999962 357889999999988888521 11
Q ss_pred ---ccccCCCCcceeEeCcEEEcC--CCCCcccccChhhHHhhh
Q 014886 374 ---LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 374 ---~~~~d~~~~~~~~~~G~~~~p--~~PGlGield~~~l~~~~ 412 (416)
....+.+.+.+.++||++.+| ++||||+|+|++++.++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~~~~p 391 (394)
T PRK15440 348 TVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRP 391 (394)
T ss_pred ccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHHhhCC
Confidence 011122223367889999999 999999999999996654
|
|
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=460.62 Aligned_cols=317 Identities=29% Similarity=0.403 Sum_probs=275.5
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|+++||.++.++++.++.++|||+ ++|.+||||+.|.+.++ |+.+.+...+..+.|.|+ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~-~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCC-CCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 68999999999887764 776666665666788886 1 1122222
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
. . .+ ++ +.+++||||||||++||..|+|+|+||||. ++++++|++++..+++++.+++++++++||++||+|
T Consensus 79 ~-~---~~-~~--~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 Q-K---LL-PA--GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred H-h---hc-cC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 1 12 22 458999999999999999999999999996 568999999988899999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 209 vG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
++. +.|+++|+++|+..+++.|++|||++|+.++|+++++.|+++++ .|||||++++|+++++++ .+++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 974 46899999999987789999999999999999999999999987 599999999998887764 35899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++|||++++.++.++. +++|++|+|++|+| ++++++++++|+++|+++++|||+||+++.++++|+ .|+..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999999984 78999999999998 999999999999999999999999999999999999 3667788
Q ss_pred cCcCCcccccCCCCcceeEeCcEEEc
Q 014886 368 DLDTPLLLSEDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 368 e~~~p~~~~~d~~~~~~~~~~G~~~~ 393 (416)
|++++..+.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9998877777874 568899998753
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=457.12 Aligned_cols=311 Identities=42% Similarity=0.661 Sum_probs=280.1
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|+++|+.++.++...++.++|||+|+ |++||||+.+.+.+++++...+...++.+.|.|+|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 47899999999999999999999999999999999 999999999877666676655555566679999999999 9999
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh-CCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LL-Gg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
++.+.....++ +.+++||||||||++||.+|+|+|+|| |+.+.++++|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPGN--GAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccCC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 99997654433 458999999999999999999999995 455678999988888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 209 vG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
+|.+++.|+++|+++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999983399999999999999999999999999987 59999999999999999874 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|+.++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 3455
Q ss_pred cCcCC
Q 014886 368 DLDTP 372 (416)
Q Consensus 368 e~~~p 372 (416)
|++++
T Consensus 309 ~~~~~ 313 (316)
T cd03319 309 DLDGP 313 (316)
T ss_pred eccCc
Confidence 55543
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=429.44 Aligned_cols=257 Identities=35% Similarity=0.563 Sum_probs=244.0
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (416)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57899999999999999999999999999999999999999975
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
++||||||||+.||.+|+|+++|+|+.++++++|++++..+++++.+++++++++||++||+|+|
T Consensus 45 ---------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg 109 (265)
T cd03315 45 ---------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG 109 (265)
T ss_pred ---------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 68999999999999999999999999888999999988888899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeE
Q 014886 211 KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (416)
Q Consensus 211 ~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPI 289 (416)
.++++|+++|++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ ++++||
T Consensus 110 ~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipi 183 (265)
T cd03315 110 RDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPI 183 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCE
Confidence 8889999999999998 7899999999999999999999999999987 59999999999999999875 789999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 014886 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 290 a~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|++++++++|++++++..
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 259 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRAV 259 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999988743
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=417.11 Aligned_cols=289 Identities=24% Similarity=0.308 Sum_probs=249.2
Q ss_pred EEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014886 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (416)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l 133 (416)
|++++|++.||.++.++.+.++.++|||+ ++|++||||+.|.|+|++|+...+...+..+.+.++|+++.++.+
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46889999999999999999999999999 569999999999999999998887777777888888877553321
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-C
Q 014886 134 AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 212 (416)
Q Consensus 134 ~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~ 212 (416)
..+++++||||||||+.||. +.|. ...+...+++..+++++..++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12457999999999999997 2221 12223346677788888776665 7999999999994 7
Q ss_pred hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 213 LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 213 ~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
++.|+++|++||+. +++++|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 89999999999997 6789999999999999999999999997 776 5999999765 78888874 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++|||+++.+++.++++.+++|++|+|++|+| ++++++++++|+++|+++++||++||+|+.++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877766
Q ss_pred cCcCCcc
Q 014886 368 DLDTPLL 374 (416)
Q Consensus 368 e~~~p~~ 374 (416)
.++++..
T Consensus 289 ~~~~~~~ 295 (307)
T TIGR01927 289 VGFTTAL 295 (307)
T ss_pred CCccHHH
Confidence 6666543
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-54 Score=411.18 Aligned_cols=250 Identities=32% Similarity=0.463 Sum_probs=231.2
Q ss_pred EEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014886 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (416)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (416)
+++++++|+++||.++.++++.++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999998632
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 132 ~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
+++||||||||+.||..| ||. ++++++|.+++..++ +..+++++++++||++||+|+|
T Consensus 48 -------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg 106 (263)
T cd03320 48 -------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG 106 (263)
T ss_pred -------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC
Confidence 589999999999999999 665 678999999888777 5557788888999999999998
Q ss_pred C-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 211 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 211 ~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
. ++++|+++|+++|+. +++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++++ +++|
T Consensus 107 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~P 178 (263)
T cd03320 107 ATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVP 178 (263)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCC
Confidence 4 678999999999998 6799999999999999999999999999987 5999999999999998873 6899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
|++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|++++++|+++++|+.
T Consensus 179 Ia~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 179 IALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999998874
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=407.81 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=250.5
Q ss_pred eEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHH
Q 014886 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (416)
Q Consensus 49 ~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (416)
++|+++++++|++.||.++.++++.++.++|+|+ ++|++||||+.|.|+|++|+...+...+....+.+.+.+.....
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~~- 79 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDEL- 79 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCcccccc-
Confidence 4799999999999999999999999999999997 78999999999999999999888776666544334444333211
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 129 ~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
...+.+++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 80 -----------~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 80 -----------SQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred -----------ccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 12346789999999999999999987521 334556788888888876 899999999
Q ss_pred cC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 209 vG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
+| .++++|+++|++||+..+++.|++|+|++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 99 57899999999999987899999999999999999999999998 876 599999964 456777764 7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++||++|||+++.. +...+ .+++|++|+|++|+| ++++++++++|+++|+++++|||+||+|+.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 567999999999998 999999999999999999999999999999999999999855
Q ss_pred CceecCcCCcccccCCC
Q 014886 364 FKFIDLDTPLLLSEDPV 380 (416)
Q Consensus 364 ~~~~e~~~p~~~~~d~~ 380 (416)
..++.++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 55677887776666654
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=407.08 Aligned_cols=283 Identities=20% Similarity=0.298 Sum_probs=236.7
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||+.|.|.|++|+...+...++.+.|.+.+. ++
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 577999999999999999999999999999999999999999999999999998877765554444544321 11
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
..+... ++.+++|||+|+.|+.+|..+. ....++++.. +.+++++.+++++++++||++||+|+
T Consensus 78 -~~~~~~-----~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~--i~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIPDA-----LPACQFGFESALENESGSRSNV--------TLNPLSYSAL--LPAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhhhc-----CCHHHHHHHHHHHHHhcccccC--------CcCCCceeee--cCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 112111 2357999999944455554321 1123444433 34567888899999999999999999
Q ss_pred CC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 210 G~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
|. ++++|+++|++||+. ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 95 578999999999998 7899999999999999999999999998 676 59999999999999999874 7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++||++|||++++.|+.++++.+++|++|+|++|+| ++++ .++|+++|+++++||++||+|+.++++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999998 8754 47899999999999999999999999999999886
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=406.20 Aligned_cols=286 Identities=17% Similarity=0.227 Sum_probs=243.9
Q ss_pred eeeEEEEEEEECCCceEEEEeccCCccCccc-------HHHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhC-CCChhh
Q 014886 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQFA 143 (416)
Q Consensus 73 ~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 143 (416)
..+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+|+.+++.+++.|.... .+....
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 357999999999999999999873 566653 444445555 4799999999999999999998753 221124
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhC------CCCceeeeeEeecC---CCHHHHHHHHHHHHHcC-CCEEEEecCCCh
Q 014886 144 SVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGKNL 213 (416)
Q Consensus 144 ~a~said~ALwDl~gk~~g~pl~~LLG------g~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~G-~~~~KiKvG~~~ 213 (416)
++++|||+||||++||..|+|+|+||| +.++++|+|.+++. .+++++...+++++++| |+.|| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 578999999999999999999999998 55678999999874 56899999999999998 99999 899765
Q ss_pred h-------HHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHh----CCCCceeeecCCCCCC----HH
Q 014886 214 K-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD----WE 272 (416)
Q Consensus 214 ~-------~d~~~v~avr~~g~~~~L~vDaN~------~w~~~~A~~~~~~L~~----~~l~~~~iEeP~~~~d----~~ 272 (416)
. ++.++|+++|+.+++..|++|+|+ +||+++|+++++.|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 4 444667777744668899999998 9999999999999986 553 9999999865 99
Q ss_pred HHHHhHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHH
Q 014886 273 GLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRL 349 (416)
Q Consensus 273 ~~~~l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~i 349 (416)
++++|++.+ ++.+++||++||++++++|++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||++
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 999997521 1236899999999999999999999999999999999998 999999999999999999999986 9999
Q ss_pred HHHHHHHHHccCCC
Q 014886 350 AMGFAGHLSAGLGC 363 (416)
Q Consensus 350 g~~a~~hlaaa~~~ 363 (416)
+.++++|++++.+.
T Consensus 363 ~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 363 SAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998764
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=405.13 Aligned_cols=287 Identities=17% Similarity=0.254 Sum_probs=231.7
Q ss_pred eEEEEEEEECCCceEEEEeccC--CccCcccH----HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhC-CCCh-hhHH
Q 014886 75 ENVAIRIELSNGCVGWGEAPVL--PHVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQ-FASV 145 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~~a 145 (416)
+.++|||+|++|++||||+.+. +..++++. ..+...++ .++|.|+|+|+.+++.+|+.|.+.. .|+. ...+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aa 92 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAI 92 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhH
Confidence 6899999999999999998753 11122322 22333344 4789999999999999999997643 2332 2357
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHhC-----CC-CceeeeeEeecCC---CHHHHHHHHHHHHH---------cCCCEEEE
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTLKL 207 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LLG-----g~-~~~v~~~~~~~~~---~~~~~~~~~~~~~~---------~G~~~~Ki 207 (416)
+||||+||||++||.+|+|||+||| |. +.++++|.+++.. ..+++.++++++++ +||+.+|+
T Consensus 93 ksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~K~ 172 (369)
T cd03314 93 RYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGEKL 172 (369)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHHHH
Confidence 8999999999999999999999999 42 5689999876543 34666666555553 36666665
Q ss_pred ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHhC-C-CCceeeecCCCCCC----HHHHH
Q 014886 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEGLG 275 (416)
Q Consensus 208 KvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~----w--~~~~A~~~~~~L~~~-~-l~~~~iEeP~~~~d----~~~~~ 275 (416)
|. ++++|.++|+++|..|+++.|++|+|++ | |+++|+++++.|+++ + + +.|||||++++| +++++
T Consensus 173 ~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~~a 249 (369)
T cd03314 173 LE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIERMA 249 (369)
T ss_pred HH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHHHH
Confidence 54 4578899999999448999999999986 6 999999999999975 2 2 369999999865 89999
Q ss_pred HhHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHH
Q 014886 276 HVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMG 352 (416)
Q Consensus 276 ~l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~ 352 (416)
+|++.. ++.+++||++||+++++++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++. +++++.+
T Consensus 250 ~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~a 329 (369)
T cd03314 250 ALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISAR 329 (369)
T ss_pred HHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHH
Confidence 997521 1125899999999999999999999999999999999998 999999999999999999999874 9999999
Q ss_pred HHHHHHccCCCC
Q 014886 353 FAGHLSAGLGCF 364 (416)
Q Consensus 353 a~~hlaaa~~~~ 364 (416)
+++|+++++++.
T Consensus 330 a~lHlaaa~~~~ 341 (369)
T cd03314 330 VTVHVALATRAD 341 (369)
T ss_pred HHHHHHHhcCCc
Confidence 999999988764
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=463.50 Aligned_cols=312 Identities=24% Similarity=0.308 Sum_probs=257.5
Q ss_pred cccCceeeEEEeEEEEEEEEeccccceeecCce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH----
Q 014886 38 KNLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---- 111 (416)
Q Consensus 38 ~~~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~--~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~---- 111 (416)
...++.+.|||++|+++++++|++.||.++.++ ...++.++|+|+|++|.+||||+.|.+. ++|+...+...+
T Consensus 923 ~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~ 1001 (1655)
T PLN02980 923 SIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLL 1001 (1655)
T ss_pred ccccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHH
Confidence 356778899999999999999999999999875 3468999999999999999999998754 345433222111
Q ss_pred --------HHHHHHHhCCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc---------
Q 014886 112 --------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN--------- 174 (416)
Q Consensus 112 --------~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~--------- 174 (416)
..+.|.|+|+++ +.++..+.. ..+..++++++||||||||+.||..|+|+|+||||.++
T Consensus 1002 ~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~~~~ 1077 (1655)
T PLN02980 1002 HVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSH 1077 (1655)
T ss_pred HHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceecccc
Confidence 123577777743 223444421 11223467999999999999999999999999988432
Q ss_pred eeeeeEee-cCCCHHHHHHHHHHHHHcCCCEEEEecCC--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 014886 175 TITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 175 ~v~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvG~--~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
.++++..+ +..+++++.+++++++++||++||+|+|. ++++|+++|++||++ |++++||+|||++|+.++|+++++
T Consensus 1078 ~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~~~~ 1157 (1655)
T PLN02980 1078 SVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGS 1157 (1655)
T ss_pred ceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34555444 35588999999999999999999999994 688999999999997 789999999999999999999999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCCCCCc-hHH
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG-VLG 324 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d-----~~~~i~~~a~d~v~~k~~k~G-i~~ 324 (416)
+|+++++ .|||||++ +.+++++|++ ++++||++||++++..+ ++++++.++ +++++|++++| +++
T Consensus 1158 ~L~~~~i--~~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~-~~i~iK~~~~GGit~ 1228 (1655)
T PLN02980 1158 LVKSCNL--KYIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPGI-VAVVIKPSVVGGFEN 1228 (1655)
T ss_pred HHhhcCC--CEEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCCC-eEEEeChhhhCCHHH
Confidence 9999987 59999997 4678888864 78999999999998754 677777764 58899999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 325 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 325 ~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++++++|+++|+++++||++||+||+++++|+|+.++.
T Consensus 1229 ~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~ 1267 (1655)
T PLN02980 1229 AALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLEM 1267 (1655)
T ss_pred HHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999999998743
|
|
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=377.76 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.0
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (416)
|+++++++|++.||.++.++.+.++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4788999999999999999999999999999999999999998
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
++||||||||+.||.+|+|+|+||||+ ++++++|.+
T Consensus 44 ---------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~---------------------------- 80 (229)
T cd00308 44 ---------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS---------------------------- 80 (229)
T ss_pred ---------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH----------------------------
Confidence 689999999999999999999999996 568888864
Q ss_pred CCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 210 GKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 210 G~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
+++|+++|+. +++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 81 -------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~p 147 (229)
T cd00308 81 -------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIP 147 (229)
T ss_pred -------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCC
Confidence 8899999998 7899999999999999999999999999986 59999999999999999975 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+.+.
T Consensus 148 Ia~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~ 227 (229)
T cd00308 148 IAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAI 227 (229)
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhh
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999987765
Q ss_pred c
Q 014886 368 D 368 (416)
Q Consensus 368 e 368 (416)
|
T Consensus 228 e 228 (229)
T cd00308 228 E 228 (229)
T ss_pred c
Confidence 5
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=350.88 Aligned_cols=287 Identities=26% Similarity=0.372 Sum_probs=238.9
Q ss_pred EEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014886 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (416)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (416)
+.+.|++||+..| ..++.|+.++++ |-.||||.+|.+.|+.|... .+
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~~----------~~-------------- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEAA----------AW-------------- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHHH----------HH--------------
Confidence 4567888887544 446788999998 99999999999888765210 00
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 014886 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 211 (416)
Q Consensus 132 ~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~ 211 (416)
..+++|.|-. |-|- ..+++|++|.+++..+++++.+.++++ .||+++|||+|.
T Consensus 60 -------------~~~~~~~~~~-------~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~ 112 (327)
T PRK02901 60 -------------LASAIEAAYG-------GPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAE 112 (327)
T ss_pred -------------HHHHHHhhhc-------cCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECC
Confidence 1344554421 1121 345789999998888887776666654 699999999973
Q ss_pred ---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 212 ---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 212 ---~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
++++|+++|++||+. ||+..|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++ +++
T Consensus 113 ~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~ 184 (327)
T PRK02901 113 PGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVG 184 (327)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCC
Confidence 689999999999998 79999999999999999999999999 77886 599999974 888999875 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|+||+++++|+++++++..
T Consensus 185 vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~ 261 (327)
T PRK02901 185 VPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELD 261 (327)
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998 988887 57899999999999999999999999999999876
Q ss_pred e-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 366 F-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 366 ~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+ +++++...+..|+ ..++.++||++.+|+ +++|++.+++|..+.
T Consensus 262 ~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l~~~~~~~ 306 (327)
T PRK02901 262 HACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARLAALAADP 306 (327)
T ss_pred cccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHHHhccCCH
Confidence 5 6776544455677 677899999999998 899999999998654
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=329.60 Aligned_cols=300 Identities=22% Similarity=0.286 Sum_probs=233.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMV 109 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~ 109 (416)
|+|++|..+.+- .++| ++.|.|+|+|++|.+|+|+++.. ..|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 589999988862 2333 46799999999999999997531 0144555666666
Q ss_pred HHH-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc---eeeeeEe
Q 014886 110 KAS-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 181 (416)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~---~v~~~~~ 181 (416)
.++ .+.|.|+|+|+.+.+.+++.|.+.. .++....+++|||||+||+.||..|+|||+||||..+ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 665 4899999999999999999997531 1111146899999999999999999999999999643 4555554
Q ss_pred ecC----CCHHHH------------HHHHHHHHHcCCCEEEE---------ecC------CChhHHHHHHHHHHHh----
Q 014886 182 IPI----VSPAEA------------AELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 226 (416)
Q Consensus 182 ~~~----~~~~~~------------~~~~~~~~~~G~~~~Ki---------KvG------~~~~~d~~~v~avr~~---- 226 (416)
++. ..+.++ .+++.+...++|+.+|. ++| ++++.|.++|+.||++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111111 13444455567888886 355 3567899999999986
Q ss_pred ----CCCcEEEEeCC-------C-------CCCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--
Q 014886 227 ----HPDSSFILDAN-------E-------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 285 (416)
Q Consensus 227 ----g~~~~L~vDaN-------~-------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-- 285 (416)
|+++.|+||+| + .|+.+++++++.. +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 67899999993 4 3566777766444 566886 69999999999999999985 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 014886 286 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 286 ~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~-~~~~es~ig~~a~~hlaaa~~ 362 (416)
.+||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|+++..+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 567999999999999999999999998 99999999999999998665 889999999888888887654
Q ss_pred C
Q 014886 363 C 363 (416)
Q Consensus 363 ~ 363 (416)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=319.64 Aligned_cols=283 Identities=21% Similarity=0.314 Sum_probs=225.0
Q ss_pred eeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhh
Q 014886 74 VENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 136 (416)
++++.|+|+|++|.+|+|++++. . .|+++++..++..+++ +.|.|+|+++.+.+.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 46899999999999999998641 1 2566777777777764 78999999999999999988653
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc-ee--eeeEeecC-----C--C-------H--HHHHHH
Q 014886 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TI--TTDITIPI-----V--S-------P--AEAAEL 193 (416)
Q Consensus 137 ~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~-~v--~~~~~~~~-----~--~-------~--~~~~~~ 193 (416)
. .++..+.+++|||||+||+.||.+|+|||++|||..+ .+ |.|..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2 1222246899999999999999999999999999644 44 44432221 1 1 1 222356
Q ss_pred HHHHHHcCCCEEE-----------EecC------CChhHHHHHHHHHHHh--------CCCcEEEEeC------------
Q 014886 194 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 236 (416)
Q Consensus 194 ~~~~~~~G~~~~K-----------iKvG------~~~~~d~~~v~avr~~--------g~~~~L~vDa------------ 236 (416)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6677788898888 3344 4567899988888873 3489999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--CCeEEeCCC-CCCHHHHHHHHHc
Q 014886 237 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKG 307 (416)
Q Consensus 237 -----N~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~ 307 (416)
|+.||.++++++++.| +++++ .|||||++++|++++++|++ ++ .+||++||+ ++++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4558889999988886 56886 69999999999999999986 44 899999996 5789999999999
Q ss_pred CCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 014886 308 NLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 308 ~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~-~~~~es~ig~~a~~hlaaa~~ 362 (416)
+++|++++|++++| ++++++++++|+++|+++++ |++.||.....+.+|++.+.+
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 99999999999998 99999999999999999977 778788887666666655444
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=315.93 Aligned_cols=285 Identities=21% Similarity=0.299 Sum_probs=217.8
Q ss_pred eeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhh
Q 014886 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 136 (416)
.+++.|+|+|++|.+|+++++... .|.+.++..++..+++ +.|.|+|++|.+.+.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 367999999999999999975421 1233344556655654 78999999999999999999653
Q ss_pred --CCCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee---c-C-----CCHHHH---------HHH
Q 014886 137 --LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---P-I-----VSPAEA---------AEL 193 (416)
Q Consensus 137 --~~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~---~-~-----~~~~~~---------~~~ 193 (416)
.++. ....+++|||||+||+.||.+|+|||+||||. +.++|++... + . .+.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1111 12368999999999999999999999999996 4466666432 1 1 123332 233
Q ss_pred HHHHHHcCCCEEE--Ee-------cC------CCh---hHHHHH----HHHHHHh-CCCcEEEEeCCC--C---------
Q 014886 194 ASKYRKQGFTTLK--LK-------VG------KNL---KEDIEV----LRAIRAV-HPDSSFILDANE--G--------- 239 (416)
Q Consensus 194 ~~~~~~~G~~~~K--iK-------vG------~~~---~~d~~~----v~avr~~-g~~~~L~vDaN~--~--------- 239 (416)
+.+...+||+.+| +| +| +++ +++++. +++++.. |+++.|++|+|. .
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3344447899999 44 45 222 233343 3333334 678999999983 2
Q ss_pred -------CCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--CCeEEeCCCC-CCHHHHHHHHHcC
Q 014886 240 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 308 (416)
Q Consensus 240 -------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs~-~~~~d~~~~i~~~ 308 (416)
|+.++|+++++. ++++++ .|||||++.+|++++++|++ ++ .+||++||+. +++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 688986 59999999999999999975 56 7999999985 4699999999999
Q ss_pred CCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEE-EccCCchHHHHHHHHHHHccCCCC
Q 014886 309 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 309 a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~-~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
++|++++|++++| ++++++++++|+++|+.++ .|++.||.++..+.+|+++..+..
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~i 386 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQI 386 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCcc
Confidence 9999999999998 9999999999999999955 688889999999999998876543
|
Alternate name: enolase |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=269.75 Aligned_cols=299 Identities=19% Similarity=0.238 Sum_probs=226.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCc----------eEEEEeccCC----ccCcccHHHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP----HVTAEDQQTAMVKA 111 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~----------~G~GE~~~~~----~~~~e~~~~~~~~~ 111 (416)
|+|++|..+.+- .|+| +++|.|+|+|++|. +|++|+.... .|.+..+..++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 699999988862 2333 46799999999998 7999985431 14455666677666
Q ss_pred H-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCC-CceeeeeEe-
Q 014886 112 S-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT- 181 (416)
Q Consensus 112 ~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LL---Gg~-~~~v~~~~~- 181 (416)
+ .+.|.|+|+++.+.+.+.+.|.... .+...+.++.||+||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 5 4899999999999999888886542 12223568999999999999999999999999 774 445666541
Q ss_pred -e--cC------------------CCHHHH-------HHHHHHHHHc--CCCEEEEecC------CChhHHHHHHHHHHH
Q 014886 182 -I--PI------------------VSPAEA-------AELASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIRA 225 (416)
Q Consensus 182 -~--~~------------------~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~~~~~d~~~v~avr~ 225 (416)
+ +. .+..+. .....+.++. |... ..+| ++++.+.+.++.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 10 111121 1111222221 3321 1233 345566666666665
Q ss_pred h----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHh-CCCCceeeecCCCCCCHHHHH
Q 014886 226 V----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 226 ~----g--~~~~L~vDaN~~--------w---------------~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~ 275 (416)
+ | +++.|.+|+..+ | |.++++++.+.|.+ |++ .|||||++.+|+++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 3 3 579999998543 3 78899999999755 886 6999999999999999
Q ss_pred HhHHhhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMG 352 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~-~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~ 352 (416)
+|++ +..+||++||+. +++.+++++++.+++|++++|++++| ++++++++++|+++|+++++++ +.||+++.+
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9975 688999999996 88999999999999999999999998 9999999999999999999965 999999999
Q ss_pred HHHHHHccCCCC
Q 014886 353 FAGHLSAGLGCF 364 (416)
Q Consensus 353 a~~hlaaa~~~~ 364 (416)
+.+|+|+..+..
T Consensus 406 Adlava~~~~~i 417 (457)
T PLN00191 406 ADLAVGLATGQI 417 (457)
T ss_pred HHHHHHhCCCcc
Confidence 999999887643
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=251.57 Aligned_cols=297 Identities=21% Similarity=0.287 Sum_probs=213.7
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCc----------eEEEEeccCC-----ccCcccHHHHHH
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (416)
+|+|++|..+.+- .|+| +++|.|+|+|++|. +|++|+.... .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4799999988762 2333 46799999999998 9999985422 244556666776
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHhhCC----------CChhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCCC--
Q 014886 110 KASE-ACEVLKESPAMALGSVFGVVAGLLP----------GHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 173 (416)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----------g~~~~~a~said~ALwDl~gk~~g~pl~~LL---Gg~~-- 173 (416)
.+++ +.|.|+|+++.+.+.+.+.|.+.+. +...+.++.|++||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 6654 7999999999999999888866211 1122568999999999999999999999999 6641
Q ss_pred -c--eeeeeEeecC--------------------CCHHHH-------HHHHHHHHHc--CCCEEEEecC------CChhH
Q 014886 174 -N--TITTDITIPI--------------------VSPAEA-------AELASKYRKQ--GFTTLKLKVG------KNLKE 215 (416)
Q Consensus 174 -~--~v~~~~~~~~--------------------~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~~~~~ 215 (416)
. ++|.+..+.. .+..+. ....++.++. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 1 3455542221 111111 1112222222 3321 1233 23344
Q ss_pred HHHHHHHH----HHhC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHhCCCCceeeec
Q 014886 216 DIEVLRAI----RAVH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 264 (416)
Q Consensus 216 d~~~v~av----r~~g--~~~~L~vDaN~------------------------~w~~~~A~~~~-~~L~~~~l~~~~iEe 264 (416)
+.+.++.+ .++| +++.|.+|+.. .++.+|.+++. +.++++++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 44444444 4443 46888888743 25566666643 67889986 69999
Q ss_pred CCCCCCHHHHHHhHHhhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEE
Q 014886 265 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~ 340 (416)
|++.+|++++++|++ ++ .+||+.||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 577999999999999999999999998 9999999999999999999
Q ss_pred EccCC-chHHHHHHHHHHHccCCC
Q 014886 341 IGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 341 ~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+++.. ||. ..+.+|||.++..
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 96654 555 5677799988764
|
|
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=205.36 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=210.7
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCCHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALGS 128 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~ 128 (416)
+..+|++.+|+....-.-...+.+|++++|++. .++..||||..|+|+||.|+.+.+..+... +-.++.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 467899999999988888888889999999998 467999999999999999987766544322 223444433222
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHHHHcCCCEEE
Q 014886 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFTTLK 206 (416)
Q Consensus 129 ~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~K 206 (416)
+.+++...++.||+-.+.+-.-. .|. |...|+ .+|+++......+ .|-+.-|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeKvAK 132 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEKVAK 132 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccceeee
Confidence 23467788999999888763211 111 223333 5788876655544 7999999
Q ss_pred EecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh-CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 207 LKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 207 iKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
+||| ...-+|=..+..+.++.||..|++|||.+|++..|..|++...+ +.-.+.|+||||...+ .-++++ +.
T Consensus 133 vKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~a--eSr~Fa----~e 206 (321)
T COG1441 133 VKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRA--ESRAFA----RE 206 (321)
T ss_pred eeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChH--HHHHHH----Hh
Confidence 9999 34456777788888999999999999999999999999998864 3223469999998642 234443 47
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
++|.||.|||+... ||..--+ ..+..+++|++.+| +..+.+.++.|+++|+..++++.+||++|+...+.+|+-+
T Consensus 207 TgIAIAWDEs~rea-dF~~e~e-~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 207 TGIAIAWDESLREA-DFAFEAE-PGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred cCeeEeecchhccc-ccccccC-CCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 99999999998874 4543333 34789999999999 8899999999999999999999999999999999998853
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=173.08 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=99.5
Q ss_pred eEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCCHH
Q 014886 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (416)
Q Consensus 49 ~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (416)
.+|+++++.+|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +.+.. ...+.+ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~---~~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETV---ASALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHH---HHHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHH---HHHHHHHHHHHHhcCCHHHHH
Confidence 5788999999999 999999999999999999999999999999998654 23332 233344 78999999999999
Q ss_pred HHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 014886 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (416)
Q Consensus 128 ~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG 170 (416)
.+++.+.+...++ ..|++||||||||++||..|+|+|+|||
T Consensus 77 ~~~~~~~~~~~~~--~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN--PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH--HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999998766553 5689999999999999999999999998
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=167.02 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=95.6
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCc
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 370 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~ 370 (416)
||+++++++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ +++++.++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCCc---ceeEeCcEEEcCC-CCCcccc
Q 014886 371 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 402 (416)
Q Consensus 371 ~p~~~~~d~~~~---~~~~~~G~~~~p~-~PGlGie 402 (416)
|+.. +|++.+ ++. +||++.+|+ +||||||
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4332 556552 445 999999999 9999997
|
... |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-14 Score=141.00 Aligned_cols=296 Identities=22% Similarity=0.326 Sum_probs=199.6
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--C-------------ccCcccHHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P-------------HVTAEDQQTAMVKA 111 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~-------------~~~~e~~~~~~~~~ 111 (416)
+|++|..+.+ -.|+|. .+|=|+|+|++|..|.+-++.- . .|.+..+..++..+
T Consensus 3 ~I~~i~aReI--------lDSRGn----pTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREI--------LDSRGN----PTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEE--------EcCCCC----ceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 5777776664 233333 6788999999999988754421 0 12223445566666
Q ss_pred HH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-c--eeeeeEeec
Q 014886 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-N--TITTDITIP 183 (416)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~--~v~~~~~~~ 183 (416)
+. ++|.|+|.+..+...+-+.|...- .++..+.++-|+.||.--+.+..+|+|||++|||.. . ++|....+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 64 789999999999887777775532 122235678999999999999999999999999963 2 444433222
Q ss_pred C-----CC---------H---HHHH----------HHHHHH-HHcCCCEEEEecC------CCh---hHHHHH-HHHHHH
Q 014886 184 I-----VS---------P---AEAA----------ELASKY-RKQGFTTLKLKVG------KNL---KEDIEV-LRAIRA 225 (416)
Q Consensus 184 ~-----~~---------~---~~~~----------~~~~~~-~~~G~~~~KiKvG------~~~---~~d~~~-v~avr~ 225 (416)
. .. | ..+. ....++ .++|..+- +| +++ ++.++. ++++.+
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfAP~l~~~eeald~i~~Aie~ 227 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFAPNLKSNEEALDILVEAIEE 227 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccCCCCCccHHHHHHHHHHHHH
Confidence 1 00 0 1111 111111 23444333 33 223 344554 456667
Q ss_pred hC--C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 226 VH--P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 226 ~g--~--~~~L~vDaN~--------------~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
++ + ++.|.+|+.. .++.++-+++...| ++|++ ..||+|+..+||+++++|.+.+ ...
T Consensus 228 agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~k 303 (423)
T COG0148 228 AGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDK 303 (423)
T ss_pred hCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCe
Confidence 64 3 4788899742 34555666655554 78885 6899999999999999998632 123
Q ss_pred CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 287 VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 287 iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+-|..|.- ++++.-+++-++.|+++.+-+|+..+| +++++..+.+|+.+|+..++++.. ||. -...+|||.++..
T Consensus 304 vqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~a 381 (423)
T COG0148 304 VQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNA 381 (423)
T ss_pred EEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCC
Confidence 67777755 678888999999999999999999999 999999999999999999887643 333 2345577776643
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=145.46 Aligned_cols=281 Identities=15% Similarity=0.180 Sum_probs=193.8
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC---ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
+|++|..+.+ -.|+|. ++|=|+|+|++| .|.+-++... .|. ..+..++..++. ++|.|+|.+
T Consensus 3 ~I~~i~aReI--------lDSRGn----PTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVA--------VLRGGK----YSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEE--------EcCCCC----ceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 6888887765 234443 678889999999 7777766521 233 335556666664 799999999
Q ss_pred CCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Ccee--eeeEeecCCC------HHH
Q 014886 123 AMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTI--TTDITIPIVS------PAE 189 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v--~~~~~~~~~~------~~~ 189 (416)
+.+...+-+.|-..- .+...+.|+-|+.||..-+.+...|+|||++|||. ...+ |....+...+ |.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 998888877775421 11222467899999999999999999999999884 3333 3332232221 222
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChhHHHHH-HHHHHHhC--C--CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 190 AAELASKYRKQGFTTLKLKVGKNLKEDIEV-LRAIRAVH--P--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~-v~avr~~g--~--~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
..+-+ .=|..+|=-+-.+.++-++. ++++.++| + ++.+.+|+...++.++-+ +.+++|++ .+||
T Consensus 149 a~~~~-----ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEIT-----DVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhhH-----HHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 11111 11222321111245666665 55666665 2 588999998557887765 77889986 6999
Q ss_pred CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc
Q 014886 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
|+..+ ++++++++ +...+.|..|.-..|-... +.++++.+-+|+..+| ++++++.+.+|+++|..+++++
T Consensus 218 p~~E~--~gw~~lt~---~g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIA---GTHGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHh---cCCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99855 99999986 2346888888776655433 7899999999999999 9999999999999999998876
Q ss_pred CC-chHHHHHHHHHHHccCCC
Q 014886 344 MV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 344 ~~-es~ig~~a~~hlaaa~~~ 363 (416)
.. ||. -...+|||.++..
T Consensus 289 RSGETe--D~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESA--DEALPHLAVGLRC 307 (341)
T ss_pred CCCCCc--chhHHHHHHHhCC
Confidence 43 332 3456677777643
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=119.10 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 219 ~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
||++||++ ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999996 39999999999999999975 789999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-13 Score=133.89 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=190.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCce-----EEEEeccCC------cc-CcccHHHHHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (416)
..+.|++|..+.+- .|+|. +.|=|+|++++|.. -.||+..+. +| .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrGn----PTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAGE----TVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCCC----eeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34668888877752 33332 56777888988843 011443221 12 2233434443
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC--------Cceeeee
Q 014886 112 SEACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 179 (416)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~--------~~~v~~~ 179 (416)
+.+.|.|+|.++.+...+-+.|.... ..+..++++-|+.||..-+.|+..++|||++||+. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 45899999999999877777665432 12223568999999999999999999999999873 1223322
Q ss_pred --Ee------------------ecC----CCHHHHHHHH-H--HHHHcCCCEEEEecC-------C---ChhHHHHH-HH
Q 014886 180 --IT------------------IPI----VSPAEAAELA-S--KYRKQGFTTLKLKVG-------K---NLKEDIEV-LR 221 (416)
Q Consensus 180 --~~------------------~~~----~~~~~~~~~~-~--~~~~~G~~~~KiKvG-------~---~~~~d~~~-v~ 221 (416)
.. +|. .+..+..+.. + ..+..|+. .-+| + +.++-++. .+
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 11 111 1222211111 1 11112322 1222 1 23455554 44
Q ss_pred HHHHhC--C--CcEEEEeCCC--C--------------------------------CCHHHHHHHHHHH-HhCC--CCce
Q 014886 222 AIRAVH--P--DSSFILDANE--G--------------------------------YKPQEAVEVLEKL-YEMG--VTPV 260 (416)
Q Consensus 222 avr~~g--~--~~~L~vDaN~--~--------------------------------w~~~~A~~~~~~L-~~~~--l~~~ 260 (416)
+++++| | ++.|.+|+-. - .|.+|-+++.+.| ++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 566664 3 4677777421 1 3456666655544 6786 4 5
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC--HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCC
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS--LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~--~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi 337 (416)
+||+|+..+||+++++|++.+ ...+-|..|.-..| +.-+++.++.++++.+.+|++.+| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 899999999999999998743 23578888865444 888999999999999999999999 9999999999999999
Q ss_pred cEE---EccCCchHHHHHHHHHHHccCC
Q 014886 338 NLM---IGGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 338 ~~~---~~~~~es~ig~~a~~hlaaa~~ 362 (416)
.++ +++. |+ .-...+|||.++.
T Consensus 426 ~~v~v~vShR--SG-eD~~IAdLAVa~g 450 (518)
T PTZ00378 426 RAVTVLVQTL--AG-NAATAAHLAVAMG 450 (518)
T ss_pred cEEccccCCC--cC-CccHHHHHHHHcC
Confidence 987 6553 22 3556778887764
|
|
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-12 Score=116.14 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=183.2
Q ss_pred eeEEEEEEEECCCceEEEEeccCC--ccCc-ccH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhCCCChh-hHH
Q 014886 74 VENVAIRIELSNGCVGWGEAPVLP--HVTA-EDQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQF-ASV 145 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~~--~~~~-e~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~-~~a 145 (416)
.+.+-|.+...+|.+=||.|...- +..+ +.+ +.....++ .+.|.|+|+|....-...+-+..+..++.. .+.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtAv 129 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTAV 129 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHHH
Confidence 357778888889999999987531 1111 111 12222333 368999999876544333223333333332 357
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHh----CCC--CceeeeeEeecCC---CHHHHHHHHHHHHHcC-CCEEEEecCCChh-
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLF----GGV--SNTITTDITIPIV---SPAEAAELASKYRKQG-FTTLKLKVGKNLK- 214 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LL----Gg~--~~~v~~~~~~~~~---~~~~~~~~~~~~~~~G-~~~~KiKvG~~~~- 214 (416)
+.++..||.|+.+-+.+.--.+.+ +-. .++||+|...+.. ..+.|.-..-..+..| ++.+. ++|.+-+
T Consensus 130 rYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve-~~G~dG~~ 208 (410)
T COG3799 130 RYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVE-ELGFDGEK 208 (410)
T ss_pred HhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHH-HhCCchHH
Confidence 889999999999877765443332 222 2356655433221 1122211111111122 11111 2333322
Q ss_pred ------HHHHHHHHHHHhCCCcEEEEeCCCC------CCHHHHHHHHHHHHhC--CCCceeeecCCCCC----CHHHHHH
Q 014886 215 ------EDIEVLRAIRAVHPDSSFILDANEG------YKPQEAVEVLEKLYEM--GVTPVLFEQPVHRD----DWEGLGH 276 (416)
Q Consensus 215 ------~d~~~v~avr~~g~~~~L~vDaN~~------w~~~~A~~~~~~L~~~--~l~~~~iEeP~~~~----d~~~~~~ 276 (416)
|-.+|+..++--+..-.|-+|..+. +++.....++..|++. ++ +.+||-|.... +++.+++
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~a~ 287 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLLAA 287 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHHHH
Confidence 3333333322223345789998864 5676667788888642 33 35999999753 4666666
Q ss_pred hHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHH
Q 014886 277 VSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGF 353 (416)
Q Consensus 277 l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a 353 (416)
++..+ +..+++.|.+||.|.+.+|+..+.++++++++|+|..-+| +.+..+.+.+|+.+.+..+.|+ +.||.++...
T Consensus 288 i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~ 367 (410)
T COG3799 288 ITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSART 367 (410)
T ss_pred HHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhh
Confidence 66532 3467899999999999999999999999999999999999 9999999999999999988866 5699999999
Q ss_pred HHHHHccCC
Q 014886 354 AGHLSAGLG 362 (416)
Q Consensus 354 ~~hlaaa~~ 362 (416)
++|++.+..
T Consensus 368 cvHValAt~ 376 (410)
T COG3799 368 CVHVALATR 376 (410)
T ss_pred hhhhhhhhc
Confidence 999987653
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-11 Score=107.80 Aligned_cols=162 Identities=19% Similarity=0.355 Sum_probs=107.3
Q ss_pred cC-CCEEEEecCCChhHHHHHHHHHH----HhC-C--CcEEEEeCCCCC------CHHHHHHHHHHHHh--CCCCceeee
Q 014886 200 QG-FTTLKLKVGKNLKEDIEVLRAIR----AVH-P--DSSFILDANEGY------KPQEAVEVLEKLYE--MGVTPVLFE 263 (416)
Q Consensus 200 ~G-~~~~KiKvG~~~~~d~~~v~avr----~~g-~--~~~L~vDaN~~w------~~~~A~~~~~~L~~--~~l~~~~iE 263 (416)
+| |..+. |+|.+-+.=.+.|+=++ +.+ + .-.|-+|..+.. +++....++..|++ .++. ..||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~-L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFK-LRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCe-eeee
Confidence 45 77888 99965444444433333 222 3 357899998743 57777778877764 2332 4999
Q ss_pred cCCCCCC----HHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCC
Q 014886 264 QPVHRDD----WEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (416)
Q Consensus 264 eP~~~~d----~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi 337 (416)
.|+...+ ++.++.|++.++ +.+++.|.+||.|.|++|++.+.+++++|++|+|..-+| +..+.+..-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 566777776544 467899999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CCchHHHHHHHHHHHccCCC
Q 014886 338 NLMIGG-MVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 338 ~~~~~~-~~es~ig~~a~~hlaaa~~~ 363 (416)
..+.|+ +.||..+...++|+|.|...
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~p 217 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATRP 217 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT-
T ss_pred ceeecccccccchhHHHHHHHHHhcCH
Confidence 999876 55999999999999987653
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=103.14 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=177.0
Q ss_pred eEEEEEEEECCCce----------EEEEeccC-----CccCcccHHHHHHHHHH-HHHHHhCC--CCCCHHHHHHHHHhh
Q 014886 75 ENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAGL 136 (416)
Q Consensus 75 ~~~iV~v~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~~ 136 (416)
++|-|.++|+.|+. |.=|+-.+ ..|.+..+..++..+++ +.|.|++. ++.+...+-+.|..+
T Consensus 18 PTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~L 97 (433)
T KOG2670|consen 18 PTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIEL 97 (433)
T ss_pred CceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHhc
Confidence 56778888887732 33332211 12334455666666664 78999987 666666666666432
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC---CCc----eeeeeEeecCC--------------------
Q 014886 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN----TITTDITIPIV-------------------- 185 (416)
Q Consensus 137 ~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg---~~~----~v~~~~~~~~~-------------------- 185 (416)
- .....+.|+-|+.+|..-+-+-..|+|||+.+.. ..+ +||.+..+...
T Consensus 98 DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~ 177 (433)
T KOG2670|consen 98 DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGAD 177 (433)
T ss_pred cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheecccCch
Confidence 1 1112246899999999999999999999988753 222 23333222111
Q ss_pred CHHHH-------HHHHHHHHHcCCCEEEEecC------CCh---hHHHHH-HHHHHHhC--CCcEEEEeCCC--------
Q 014886 186 SPAEA-------AELASKYRKQGFTTLKLKVG------KNL---KEDIEV-LRAIRAVH--PDSSFILDANE-------- 238 (416)
Q Consensus 186 ~~~~~-------~~~~~~~~~~G~~~~KiKvG------~~~---~~d~~~-v~avr~~g--~~~~L~vDaN~-------- 238 (416)
+-++. -...+.....-|..---.|| +++ ++-++. +++++++| .+++|-+|...
T Consensus 178 sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgk 257 (433)
T KOG2670|consen 178 SFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGK 257 (433)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCCc
Confidence 00110 11111112222222223343 233 445554 34566664 46888888531
Q ss_pred -------------C-CCHHHHHH-HHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHH
Q 014886 239 -------------G-YKPQEAVE-VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVK 302 (416)
Q Consensus 239 -------------~-w~~~~A~~-~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~ 302 (416)
. ++.++..+ +-.-+.+|++ .-||+|+..+||+.+..+.. ..++.|..|. .++++..+.
T Consensus 258 YDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpkri~ 331 (433)
T KOG2670|consen 258 YDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPKRIA 331 (433)
T ss_pred ccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHHHHH
Confidence 2 24555444 4444578886 69999999999999998764 5789998775 588899999
Q ss_pred HHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccC
Q 014886 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGL 361 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~ 361 (416)
++++..+|+.+-+|+..+| ++++++.+.+|++.|..+|++... ||. -.+.++|..++
T Consensus 332 ~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETe--DtFIaDL~VGl 390 (433)
T KOG2670|consen 332 TAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETE--DTFIADLVVGL 390 (433)
T ss_pred HHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcc--cchHHHhhhhh
Confidence 9999999999999999999 999999999999999999987643 332 22344554444
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=106.99 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC------------ChhH-------------HHHHHHHHHHh-CCCcEEEEeCC-----
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK------------NLKE-------------DIEVLRAIRAV-HPDSSFILDAN----- 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~------------~~~~-------------d~~~v~avr~~-g~~~~L~vDaN----- 237 (416)
++.+.++.+.+.||..|+|+.+. +... ..+.|++||+. |+++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34666777888999999999852 2223 38899999997 78999999955
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCceeee-----------cCC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
++|+.++++++++.|+++++. ||| .|+ +..+.+.++++++ .+++||+.++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 899999999999999999874 999 466 3345566666653 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.+.+|+|++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999854
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-09 Score=97.26 Aligned_cols=142 Identities=21% Similarity=0.310 Sum_probs=118.0
Q ss_pred HHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCc
Q 014886 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDS 230 (416)
Q Consensus 167 ~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~ 230 (416)
.+++......|+..++...+++++.+.++.+.+.||..++|++|. +++...+.++++|+..+ .
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 344444556777888888899999999988888899999999873 56677888999998744 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHHHhCCCCceee-------ec-CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 231 SFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 231 ~L~vDaN~~w~~~-~A~~~~~~L~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
.+.++.|.+|+.+ ++.++++.|++.++. +| ++ +..+.+++..+++++ ..++||.++..+.+.+++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 8899999999876 899999999999875 78 76 666667877777764 678999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 014886 302 KKIVKGNLADVINI 315 (416)
Q Consensus 302 ~~~i~~~a~d~v~~ 315 (416)
.++++.+.+|.+++
T Consensus 199 ~~~l~~~gad~V~i 212 (231)
T cd02801 199 LRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHhcCCCEEEE
Confidence 99999877899876
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=95.94 Aligned_cols=166 Identities=19% Similarity=0.376 Sum_probs=108.4
Q ss_pred cCCCHHHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEeCCC-------CCCHHHHHHHHHH-
Q 014886 183 PIVSPAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE-------GYKPQEAVEVLEK- 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~~G~~~~KiKvG~~~~~d~~~v~avr~~g--~~~~L~vDaN~-------~w~~~~A~~~~~~- 251 (416)
++.++++..+.+.++ .+.||+. +|+++-|+... +-+ .+-+..++... ..|.++-+++...
T Consensus 75 ~~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~l 145 (295)
T PF00113_consen 75 NIDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDL 145 (295)
T ss_dssp SBSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHH
Confidence 345677766665555 3478877 77776432111 112 12344444433 3578887775555
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~ 329 (416)
+++|++ ..||+|+..+||+++++|++.+. -.+-|..|. .++++..+.+.++.++++.+.+|+..+| ++++++++
T Consensus 146 i~~YPI--vsIEDpf~edD~e~w~~lt~~~g--~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~ 221 (295)
T PF00113_consen 146 IKKYPI--VSIEDPFDEDDWEGWAKLTKRLG--DKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAV 221 (295)
T ss_dssp HHHS-E--EEEESSS-TT-HHHHHHHHHHHT--TTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHH
T ss_pred HHhcCe--EEEEccccccchHHHHHHHHhhh--cceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHH
Confidence 478985 69999999999999999987432 238888886 4677888999999999999999999999 99999999
Q ss_pred HHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 330 EVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
.+|+++|..+++++.. || .-...+|||.++..
T Consensus 222 ~~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a 254 (295)
T PF00113_consen 222 KLAKSAGWGVVVSHRSGET--EDTFIADLAVGLGA 254 (295)
T ss_dssp HHHHHTT-EEEEE--SS----S--HHHHHHHHTT-
T ss_pred HHHHHCCceeeccCCCCCc--CchhHHHHHhccCc
Confidence 9999999999987754 33 23466788887754
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=94.56 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------C----hhHHHHHHHHHHHh-CCCcEEEEeCC-----
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFILDAN----- 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~----~~~d~~~v~avr~~-g~~~~L~vDaN----- 237 (416)
+..+.++++.+.||..|-|..+. + ++-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34666777788999999998761 1 23456789999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCceeee-------cCCCC---C----C-----HHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D----D-----WEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~---~----d-----~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
++|+.++++++++.|++.++. ||| +|... + + ++..++++ +++++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 689999999999999999874 998 66532 1 0 23334444 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
++++.++++.+.+|+|.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=90.25 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC------------Ch-------------hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK------------NL-------------KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~------------~~-------------~~d~~~v~avr~~-g~~~~L~vDaN------ 237 (416)
..+.++.+.+.||..|+|+.+. +. +...+.|++||+. ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4556677788999999999861 11 2237889999997 78888988887
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeee-------cCCC---------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
++|+.++++++++.|++.++. ||+ +|.. ..+++..++++ +.+++||++.+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIK----KAVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHH----HHCCCCEEEeCCCCCHHHH
Confidence 458999999999999999974 884 6543 23344455554 3678999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 014886 302 KKIVKGNLADVINI 315 (416)
Q Consensus 302 ~~~i~~~a~d~v~~ 315 (416)
.++++.+.+|++.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988999865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-07 Score=89.71 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCCEEEEecC----------C-----------C----hhHHHHHHHHHHHh-CCCcEEE-----EeCC-
Q 014886 190 AAELASKYRKQGFTTLKLKVG----------K-----------N----LKEDIEVLRAIRAV-HPDSSFI-----LDAN- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG----------~-----------~----~~~d~~~v~avr~~-g~~~~L~-----vDaN- 237 (416)
..+.|+.+.+.||..|+|+.+ + + .+...+.|++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 455667778899999999873 1 1 35567889999997 7776664 5654
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-----ceeeecCCCCCC--------HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998742 125688876431 22334454 4789999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.+.+|++++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999855
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-05 Score=64.15 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=76.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (416)
+|++|..+.+ -.++|. .++=|+|.+++|..|.+-++.. ..|.+..+..++..
T Consensus 1 ~I~~v~~r~I--------lDsrG~----PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREI--------LDSRGN----PTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEE--------E-TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEE--------EcCCCC----ceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 4677776664 234443 6888999999998888877542 11233456677777
Q ss_pred HHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LL 169 (416)
++. +.|.|+|.++.+...+-+.|...- ..+..+.+.-|+.+|++-+.++..|+|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 765 789999999999888877775432 11222467899999999999999999999976
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0053 Score=60.41 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=101.9
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC-CCcEEEEeCCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDANE 238 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g-~~~~L~vDaN~ 238 (416)
.|+...+...+|+++.+.++.+.+.||..+-|.+|. +++.-.+.++++|+.. +++.+.|=-.-
T Consensus 63 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 63 TLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 455567777899999998888888999999999872 3445566678888874 45666666555
Q ss_pred CCC-HHHHHHHHHHHHhCCCCce-----eeecCCCC--CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 239 GYK-PQEAVEVLEKLYEMGVTPV-----LFEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 239 ~w~-~~~A~~~~~~L~~~~l~~~-----~iEeP~~~--~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+|+ .+++.++++.+++.|+... .-+|-... -|++..+++++ +.++||.+.=.+.+.+++.++++.+.+
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 775 4568899999999776421 12332221 25666677654 678999999999999999999988889
Q ss_pred CEEEeCCC
Q 014886 311 DVINIKLA 318 (416)
Q Consensus 311 d~v~~k~~ 318 (416)
|.|.+=-+
T Consensus 219 DgVmiGRg 226 (312)
T PRK10550 219 DAVMIGRG 226 (312)
T ss_pred CEEEEcHH
Confidence 99987433
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=58.11 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=98.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++...+...+|+++.+.++...+.||..+-+.+|- +++.-.+.++++|+.. ++.+.+=-+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 33456667799999888887778899999999882 3555666677888763 334444444667
Q ss_pred CH--HHHHHHHHHHHhCCCCceee-------ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 241 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 241 ~~--~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+. .++.++++.+++.|+. +| +|-.. ..+++..+++++ ++++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 54 3678999999998864 55 33322 245666666653 678999999999999999999987678
Q ss_pred CEEEeCCCCC
Q 014886 311 DVINIKLAKV 320 (416)
Q Consensus 311 d~v~~k~~k~ 320 (416)
|++++=-+-+
T Consensus 219 dgVmiGR~~l 228 (321)
T PRK10415 219 DALMIGRAAQ 228 (321)
T ss_pred CEEEEChHhh
Confidence 9998854333
|
|
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0044 Score=53.55 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=61.4
Q ss_pred eeEEEEEEEECCCceEEEEeccC--CccCc-ccH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhCCCCh-hhHH
Q 014886 74 VENVAIRIELSNGCVGWGEAPVL--PHVTA-EDQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQ-FASV 145 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~--~~~~~-e~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~a 145 (416)
-+.+.|-+..+||.+.||.|... .+..+ +.+ ...+..++ .+.|.|+|++.....++.+.+.....|.. ..+.
T Consensus 50 gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtAi 129 (159)
T PF05034_consen 50 GESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTAI 129 (159)
T ss_dssp EEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HHH
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhHH
Confidence 46888999999999999999863 11111 211 22223333 47899999999998888887776654432 2467
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LL 169 (416)
+-+|..||+|+.+|..+.-..+.+
T Consensus 130 RYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 130 RYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHhHHHHHHHHHHHHcCCcHHHHH
Confidence 899999999999999987665544
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.018 Score=56.98 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=108.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+..-+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|++++++.+++.+.|=-.-+|
T Consensus 68 p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~ 147 (323)
T COG0042 68 PVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGW 147 (323)
T ss_pred CEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEeccc
Confidence 4455667788988888888888999999999998 256777788999999855788888888899
Q ss_pred CHHH--HHHHHHHHHhCCCCceee---------ecCCCCCCHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcC
Q 014886 241 KPQE--AVEVLEKLYEMGVTPVLF---------EQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 241 ~~~~--A~~~~~~L~~~~l~~~~i---------EeP~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
+..+ +..+++.+++.++...++ ..| -||+..+++++ ..+ +||.+.-.+.+.++.++.++..
T Consensus 148 d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 148 DDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred CcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 7665 778899998877642222 233 46888888875 455 9999999999999999999988
Q ss_pred CCCEEEeCCCCCc
Q 014886 309 LADVINIKLAKVG 321 (416)
Q Consensus 309 a~d~v~~k~~k~G 321 (416)
.+|.+.+--+-.|
T Consensus 221 g~DgVMigRga~~ 233 (323)
T COG0042 221 GADGVMIGRGALG 233 (323)
T ss_pred CCCEEEEcHHHcc
Confidence 8999988544444
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.018 Score=55.85 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=95.6
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-----------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
.|+..++...+++++.+.++.+.+.|+..+-+.++. +++.-.+.+++||+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 355566766788888888888888899999998871 2233445678888764 6778888888899999
Q ss_pred HHHHHHHHHhCCCCceeeecC---------------CCCC-------------CHHHHHHhHHhhhccC--CCeEEeCCC
Q 014886 245 AVEVLEKLYEMGVTPVLFEQP---------------VHRD-------------DWEGLGHVSHIAKDKF--GVSVAADES 294 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP---------------~~~~-------------d~~~~~~l~~~~r~~~--~iPIa~dEs 294 (416)
..++++.+++.++. +|.=+ .... .++..++++ +.. ++||.+.=-
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998764 55521 0000 122223333 355 799999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 014886 295 CRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.+.+++.+++..| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999988 788765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.043 Score=54.80 Aligned_cols=120 Identities=21% Similarity=0.322 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc--EEEEeC----C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILDA----N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~--~L~vDa----N 237 (416)
..+.|+.+.+.||..+-|..+. +++ --++.|++||+. ++++ .+++-. .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 4555677788999999999831 222 234678899997 6664 455554 3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCceeee-------cC------CCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 EGYKPQEAVEVLEKLYEMG-VTPVLFE-------QP------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~-l~~~~iE-------eP------~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
++++.++++++++.|++.+ +. ||+ ++ .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4589999999999999986 54 554 11 111 1133333443 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
+++..++++.+.+|.+.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.068 Score=50.24 Aligned_cols=131 Identities=14% Similarity=0.217 Sum_probs=93.2
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++..++...+++++.+.++.. +.++..+-|.+|- +++.-.+.++++++. +..+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 455677778999987776654 5689999988762 555566667777754 334444444445
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCC---CHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+..+..++++.+++.++...-+.+=.+.. +++.++++++ .. ++||.+.=.+.+.+|+.++++.| +|.+++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 55667899999999887645666544322 4666666654 55 49999999999999999999976 688876
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.04 Score=55.83 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCEEEEec---CC-------------------Chh----HHHHHHHHHHHh-CCCcEEE--EeC-----
Q 014886 191 AELASKYRKQGFTTLKLKV---GK-------------------NLK----EDIEVLRAIRAV-HPDSSFI--LDA----- 236 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKv---G~-------------------~~~----~d~~~v~avr~~-g~~~~L~--vDa----- 236 (416)
.+.|+.+.+.||..|.|.. |. +++ --++.|++||++ ++++.+. +.+
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 5556677789999999997 41 122 235678899987 6774433 322
Q ss_pred -------------CCCCCHHHHHHHHHHHHhCCCCceeeec-------CC---CCCC-HHH-HHHhHHhhhccCCCeEEe
Q 014886 237 -------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 237 -------------N~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~r~~~~iPIa~ 291 (416)
+++++.++++++++.|++.++. ||+= +. ++.. ..+ +..+.+.+++..++||.+
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 310 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM 310 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE
Confidence 3478999999999999988764 5531 11 0000 000 111222233467899999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 292 DESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
-=.+.++++..++++.+.+|.|.+
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeee
Confidence 889999999999999999999855
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.1 Score=51.86 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.2
Q ss_pred HHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C
Q 014886 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 228 (416)
Q Consensus 167 ~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~ 228 (416)
.++.-.....|+...+...+|+++.+.++.+.+.||..+-|.+|. +++.-.+.++++|+.. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 334333334456667778899999888888888899999988871 3445567788888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee--------cC--------CCCCCHHHHHHhHHhhhcc-CCCeEE
Q 014886 229 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 290 (416)
Q Consensus 229 -~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~r~~-~~iPIa 290 (416)
.+++++-....-+.+++.++++.+++.|+. +|. |- +++-+++..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223467788999999988865 442 11 12345666666653 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 291 ADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 291 ~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+.=.+.+++|+.++++ + +|.+++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9888999999999987 4 8988773
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.018 Score=56.57 Aligned_cols=142 Identities=23% Similarity=0.362 Sum_probs=95.0
Q ss_pred HhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------CChhHHHHHHHHHHHhCCCcE
Q 014886 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSS 231 (416)
Q Consensus 168 LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------~~~~~d~~~v~avr~~g~~~~ 231 (416)
++......-|+..-+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|+++++..+ ..
T Consensus 46 ~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~p 124 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IP 124 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SE
T ss_pred cccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cc
Confidence 3333333345556677788998888777666669999999998 256667778888888744 67
Q ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCCceee-------ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 232 FILDANEGYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 232 L~vDaN~~w~--~~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
+.+--.-+|+ .++.+++++.|++.|+. +| +|-.. +.||+.++++++ ..++||.+.=.+.+.+|+
T Consensus 125 vsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 125 VSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPEDA 198 (309)
T ss_dssp EEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHHH
T ss_pred eEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHHH
Confidence 7777777776 77889999999999874 44 33332 457888888875 678999999999999999
Q ss_pred HHHHHcCCCCEEEeC
Q 014886 302 KKIVKGNLADVINIK 316 (416)
Q Consensus 302 ~~~i~~~a~d~v~~k 316 (416)
.++++.-.+|.+.+=
T Consensus 199 ~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 199 ERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHCCCH-SSEEEES
T ss_pred HHHHHhcCCcEEEEc
Confidence 999887458998763
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.071 Score=52.64 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=93.5
Q ss_pred eeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 014886 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 238 (416)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~ 238 (416)
..|+...+...+++++.+.++.+.+.||..+-|..|. +++.-.+.+++||+.. ++.+.+-...
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRI 140 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEc
Confidence 4455667778899999999988888999999998872 2233455677777753 2444444444
Q ss_pred CCCH--HHHHHHHHHHHhCCCCceeee-------cCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 239 GYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 239 ~w~~--~~A~~~~~~L~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
+|+. .+..++++.|++.++. +|- +-.+ +.+++..++++ +..++||.+.=.+.+.+++.++++.+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 5542 3467888999888764 332 1111 12455555555 36789999999999999999999777
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.+++
T Consensus 215 gad~Vmi 221 (319)
T TIGR00737 215 GCDGVMI 221 (319)
T ss_pred CCCEEEE
Confidence 7899987
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.069 Score=52.22 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=93.1
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcC-CCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
.|+..++...++++..+.++++.+.| +..+-|.++ .+++.-.+.+++||+.. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 34556777778999999898888888 999998653 23455667788888865 5667776653 44
Q ss_pred HHHHHHHHHHHhCCCCceeee---------------cCC-------------CCCCHHHHHHhHHhhhccCCCeEEeCCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 294 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~r~~~~iPIa~dEs 294 (416)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778889999887753 221 111 111233344443 467899999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeCC
Q 014886 295 CRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
+.+.+++.+++..| +|.+++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999988 69988743
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.064 Score=53.89 Aligned_cols=120 Identities=27% Similarity=0.372 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L~vDaN------ 237 (416)
..+.|+.+.+.||..|-|+.+. ++ .--.+.|++||++ ++++.+.+=-|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3555677778999999999752 22 2235678999997 78864443222
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCceeeec-------C-CCCCCHHHHHHhHHhhhccCCCeEEeCCCC----------
Q 014886 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQ-------P-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 295 (416)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P-~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~---------- 295 (416)
++.+++++.++++.|++.++. ||+= | ....++.-.++++ +..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCccccccccccc
Confidence 247889999999999988764 4532 2 2211222223333 4678898876555
Q ss_pred --------CCHHHHHHHHHcCCCCEEEe
Q 014886 296 --------RSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 296 --------~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++++..++++.|.+|.+.+
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeehh
Confidence 58899999999998998743
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.16 Score=50.17 Aligned_cols=142 Identities=13% Similarity=0.197 Sum_probs=96.1
Q ss_pred HhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C-
Q 014886 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P- 228 (416)
Q Consensus 168 LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~- 228 (416)
+|.-.....|+...+...+++++.+.++.+.+.||..+-|.+|- +++.-.+.|++++++. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44333334456667778899999888888878899999999872 3455566788888863 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee--------cCCC--------CCCHHHHHHhHHhhhccC-CCeEEe
Q 014886 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QPVH--------RDDWEGLGHVSHIAKDKF-GVSVAA 291 (416)
Q Consensus 229 ~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP~~--------~~d~~~~~~l~~~~r~~~-~iPIa~ 291 (416)
.+++++-.+..=+.+.+.++++.+++.++. +|. |-+. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 345554211111346788999999988864 442 2221 125655555553 44 799998
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.=.+.+.+|+.+.+. + +|.+++=-
T Consensus 201 NGdI~s~~da~~~l~-g-~dgVMigR 224 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-H-VDGVMVGR 224 (318)
T ss_pred ECCcCCHHHHHHHHh-C-CCEEEECH
Confidence 889999999999885 4 89998743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.21 Score=47.06 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=89.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-C---------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~---------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+...+...+++++.+.++...+ +...+-|.+| + +++.-.+.++++|+. ++.+.+=-...|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 34455666788888877776644 4588888877 1 345556678888875 455666555568
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCC--CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~--~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+ ++..++++.+++.++...-+..=. ..-|++..+++ +.++||.+.=.+.+.+++.++++.| +|.+++--+
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 778889999998876421111111 12244444443 1579999999999999999999987 899987543
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.19 Score=48.99 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=90.5
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.+++||+.. ++.+.+--+ .+.++
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~~ 167 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVTD 167 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCchh
Confidence 4556666678888888888888889999999765 23445556788888864 455655543 33446
Q ss_pred HHHHHHHHHhCCCCceee-------------e--cCCC-------------CCCHHHHHHhHHhhhccCCCeEEeCCCCC
Q 014886 245 AVEVLEKLYEMGVTPVLF-------------E--QPVH-------------RDDWEGLGHVSHIAKDKFGVSVAADESCR 296 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~i-------------E--eP~~-------------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~ 296 (416)
..++++.+++.++. .| + .|.. +..++..++++ +..++||...=.+.
T Consensus 168 ~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~ 241 (296)
T cd04740 168 IVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIA 241 (296)
T ss_pred HHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCC
Confidence 77888888887653 22 1 1210 01123333443 46789999999999
Q ss_pred CHHHHHHHHHcCCCCEEEeCCC
Q 014886 297 SLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 297 ~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+++.++++.| +|.+++=-.
T Consensus 242 ~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 242 SGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CHHHHHHHHHcC-CCEEEEchh
Confidence 999999999998 699987544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.11 Score=51.66 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHhC--C-CcEEEEe--CCCCC
Q 014886 191 AELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVH--P-DSSFILD--ANEGY 240 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~g--~-~~~L~vD--aN~~w 240 (416)
.+.|+.+.+.||..+-|..+. +++. -.+.|++||++. + .+++..+ .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 555667778999999999861 2222 345678888863 2 1334332 34578
Q ss_pred CHHHHHHHHHHHHhCCCCceeeec--------CCC---CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
+.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||..-=.+.++++..++++.|.
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 999999999999988764 5531 111 1123323334 3467899988888999999999999998
Q ss_pred CCEEEe
Q 014886 310 ADVINI 315 (416)
Q Consensus 310 ~d~v~~ 315 (416)
+|.|.+
T Consensus 299 ~D~V~~ 304 (337)
T PRK13523 299 ADLIFI 304 (337)
T ss_pred CChHHh
Confidence 898743
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.15 Score=56.54 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEeC----C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA----N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L--~vDa----N 237 (416)
..+.++.+++.||..|-|..+. ++ .--++.+++||++ ++++.+ ++-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3555677788999999999761 22 2345678899997 666433 3332 4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------CCCCCCHHHH-HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
++|+.++++++++.|++.++. ||+= +.+.. ...+ ..+.+.+++..++||..-=.+.++++..++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 679999999999999998864 5541 11100 0001 1122223346789999988999999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.+.+
T Consensus 710 ~~D~v~~ 716 (765)
T PRK08255 710 RADLCAL 716 (765)
T ss_pred CcceeeE
Confidence 9999865
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.21 Score=50.17 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc--EEEEe---C-C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILD---A-N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~--~L~vD---a-N 237 (416)
..+.++++++.||..+-|+-.. +++ --++.|++||++ +++. .+++= . +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3556677888999999999741 222 346779999998 7763 34432 2 2
Q ss_pred -CCCCHHHHHHHHHHHHhCC-CCce----eeecCCCCCCHH--HH-HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 -EGYKPQEAVEVLEKLYEMG-VTPV----LFEQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~-l~~~----~iEeP~~~~d~~--~~-~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.+|+.+++.++++.|++.+ +... |-.++-..-... ++ ...+...+....+|+.+--.+++++...++++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 4321 222221111111 11 1112122346679999998999999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.|-+
T Consensus 311 ~aDlVa~ 317 (363)
T COG1902 311 RADLVAM 317 (363)
T ss_pred CCCEEEe
Confidence 8898743
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.29 Score=49.29 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc-EEEEe-------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS-SFILD------- 235 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~-~L~vD------- 235 (416)
..+.|+.+++.||..+-|+.+. +++ --++.|++||++ +++. -+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556677788999999999751 121 235678899997 6653 33442
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCceeeecCCCCC--CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 236 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 236 aN~~w~~~~-A~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
..++++.++ ++++++.|++.++. ||+=-.... ...-...+.+.+++.+++||...-. .+++...++++.|.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 235688888 89999999988764 665222100 0000111222233467889887655 48999999999999999
Q ss_pred EEe
Q 014886 313 INI 315 (416)
Q Consensus 313 v~~ 315 (416)
|.+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 854
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.27 Score=47.96 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=98.7
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHc--CCCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
|+..++...+++++.+.++.+.+. ++..|-+.+| .+++.-.+.++++|+.. +..+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 445566667889988888777654 3889999887 13455566788888764 4567766654 44
Q ss_pred HHHHHHHHHHHhCCCCceeee---------------cCCCCC---------C----HHHHHHhHHhhhccCCCeEEeCCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFE---------------QPVHRD---------D----WEGLGHVSHIAKDKFGVSVAADES 294 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~~~~---------d----~~~~~~l~~~~r~~~~iPIa~dEs 294 (416)
++..++++.+++.++. +|. +|.... . ++..+++ ++..++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~GG 242 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVGG 242 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEECC
Confidence 6778899999988764 442 110000 0 1222333 3467899999989
Q ss_pred CCCHHHHHHHHHcCCCCEEEeCCCCC--c-h-HHH-HHHHHHHHHcCCc
Q 014886 295 CRSLDDVKKIVKGNLADVINIKLAKV--G-V-LGA-LEIIEVVRASGLN 338 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~k~~k~--G-i-~~~-l~i~~~A~~~gi~ 338 (416)
+.+.+++.+++..| +|.+++=-.-+ | + ... ..+.++.+++|..
T Consensus 243 I~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 243 ITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999999988 79988643322 2 2 222 2355566666653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.26 Score=49.41 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCEEEEecC---------------------CChhH----HHHHHHHHHHh-C----CCcEEEE--eC-
Q 014886 190 AAELASKYRKQGFTTLKLKVG---------------------KNLKE----DIEVLRAIRAV-H----PDSSFIL--DA- 236 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG---------------------~~~~~----d~~~v~avr~~-g----~~~~L~v--Da- 236 (416)
..+.|+++.+.||..+-|..+ .+++. -.+.|++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 455667778899999999864 12222 34568889987 6 5655443 32
Q ss_pred ---CCCCCHHHHHHHHHHHHhCCCCceeee-------cCCC---CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 237 ---NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 237 ---N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
.++++.++.+++++.|++.++. ||+ .+.. .......+.+++.. ..++||.+-=.+.++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3577899999999999998874 665 1111 11122233343211 13789998778899999999
Q ss_pred HHHcCCCCEE
Q 014886 304 IVKGNLADVI 313 (416)
Q Consensus 304 ~i~~~a~d~v 313 (416)
+++.+ +|.+
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99875 6765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.41 Score=45.43 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=79.6
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEEE-------ecC-------CChhHHHHHHHHHHHh--C-CCcEE--EEeCCCC--
Q 014886 181 TIPIVSPAEAAELASKYRKQGFTTLKL-------KVG-------KNLKEDIEVLRAIRAV--H-PDSSF--ILDANEG-- 239 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~G~~~~Ki-------KvG-------~~~~~d~~~v~avr~~--g-~~~~L--~vDaN~~-- 239 (416)
..+..+++++.+.++++.+.|...+|| |.| .+.++-+++|++++++ . +++.| +.|+-..
T Consensus 77 ~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~ 156 (243)
T cd00377 77 DTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE 156 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence 344557777888889999999999999 222 2567888899999986 3 35443 5677544
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
...++|++.++...+.|-...|+|-|. +.+.++++.+ +.+.|+..-
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 679999999999999987777999886 4566777764 578888865
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.71 Score=46.62 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCC----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDAN---- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~--~L~vDaN---- 237 (416)
..+.|+.+.+.||..+-|+.+. ++ .--.+.|++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 3556677788999999999762 11 2235678999997 7775 4444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCC-----ceeeecC-CC----CC--CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 238 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
+.++.++++++++.|++. +. .-+.+.. .. +. .++..+++ ++..++||..-=.+.++++..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0112211 10 11 12222333 3467899998878999999999
Q ss_pred HHHcCCCCEEEe
Q 014886 304 IVKGNLADVINI 315 (416)
Q Consensus 304 ~i~~~a~d~v~~ 315 (416)
+++.+.+|.|.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999855
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.82 Score=45.57 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeCC-----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~-~~L~vDaN----- 237 (416)
..+.++.+.+.||..+-|..+. ++ .--.+.|++||++ +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3556677788999999999762 11 2235678889987 654 34444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCceeeec--CC-----CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.+.+.++.+++++.|++.++. +|+= .. ....++..++++ +.+++||..-=.+. +++..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 135889999999999987753 5542 11 112333344444 46789999877776 88999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.|.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 8999854
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.58 Score=44.57 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------------
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-------------- 239 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN~~-------------- 239 (416)
+|+....+..+.+++ +++...|... +-+|...-+|.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 344555566676654 4455667655 4567555567788888888753 57889997532
Q ss_pred C---CHHHHHHHHHHHHhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 240 Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 240 w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
| +..+..++++.+++.++...-+ ..+.. .|++.++++++ .+++||.+.=-+.+.+++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 2345678889999887651112 12222 24565666653 678999988889999999999998878
Q ss_pred CEEEeCCCC-CchHHHHHHHHHHHHcCCcE
Q 014886 311 DVINIKLAK-VGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 311 d~v~~k~~k-~Gi~~~l~i~~~A~~~gi~~ 339 (416)
|.+.+--.. .|-.....+.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 887553222 24123456678888898875
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.77 Score=42.35 Aligned_cols=97 Identities=11% Similarity=0.231 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++.+.++.|-+.++. .+|=++...+. +.++++++ +.-++.|-+| ++.+.++++++++.|+ +++ +-|+
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~---~~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~- 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRK---EVPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPG- 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCC-
Confidence 789999999999999986 99999976553 44555653 1224566665 7899999999999985 776 2222
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+ ..++++.|+++|+++++|+++-|.+.
T Consensus 89 --~--~~~v~~~~~~~~i~~iPG~~TptEi~ 115 (204)
T TIGR01182 89 --L--TPELAKHAQDHGIPIIPGVATPSEIM 115 (204)
T ss_pred --C--CHHHHHHHHHcCCcEECCCCCHHHHH
Confidence 2 24678999999999999998766544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.64 Score=45.48 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
|.+....-+++|++.|.++ +==-++. ++-+.+++++ +++++|+.+|=... ..-+.+..+.| +|-+.++|+.
T Consensus 34 Dv~aTv~QI~~L~~aG~dI--VRvtv~~~e~A~A~~~Ik----~~~~vPLVaDiHf~-~rla~~~~~~g-~~k~RINPGN 105 (361)
T COG0821 34 DVEATVAQIKALERAGCDI--VRVTVPDMEAAEALKEIK----QRLNVPLVADIHFD-YRLALEAAECG-VDKVRINPGN 105 (361)
T ss_pred cHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHHH----HhCCCCEEEEeecc-HHHHHHhhhcC-cceEEECCcc
Confidence 4555566677787777643 3323332 2344555555 47899999997765 55555666665 8999999999
Q ss_pred Cc-hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 320 VG-VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 320 ~G-i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
+| -.....+++.|+++|+++-+|-..
T Consensus 106 ig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 106 IGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 99 567889999999999999886654
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.7 Score=40.69 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.++|.++++.|-+.|+. .+|=.+...+ .+.+++|++..+++. ++-|-+| ++.|.++++.+++.|+ +++.- |+
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA-~FiVs-P~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGA-NFIVT-PL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 789999999999999986 9999997643 445666653222222 2444444 8899999999999985 77632 22
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+. ..+++.|+++|+++++|+++-|-+-
T Consensus 100 ---~~--~~v~~~~~~~~i~~iPG~~TpsEi~ 126 (222)
T PRK07114 100 ---FN--PDIAKVCNRRKVPYSPGCGSLSEIG 126 (222)
T ss_pred ---CC--HHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 11 4568999999999999999766544
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.4 Score=43.70 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHH
Q 014886 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (416)
Q Consensus 227 g~~~~L~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~ 302 (416)
|.+..+.|-. |.. -+.+..++-+++|++.|.+ .+==-++. ++.+.+++++ +++++|+.+|=. ++..-+.
T Consensus 23 Gg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl 95 (360)
T PRK00366 23 GGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLAL 95 (360)
T ss_pred CCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHH
Confidence 4455555543 222 2456667777778877764 34334432 2334455554 478999999976 4555556
Q ss_pred HHHHcCCCCEEEeCCCCCc-hH-HHHHHHHHHHHcCCcEEEccC
Q 014886 303 KIVKGNLADVINIKLAKVG-VL-GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~-~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..++.| +|.+.++|+.+| .. ...++++.|+++|+++-+|..
T Consensus 96 ~a~~~G-~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 96 AAAEAG-ADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred HHHHhC-CCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 667766 799999999998 45 578899999999999988654
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.6 Score=40.10 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++.+.++.|-+-|+. .+|=++...+ ++.++++++ +.-++-|-+| ++.+.++++++++.|+ +++.- |+.
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~---~~~~~~vGAG-TVl~~e~a~~ai~aGA-~FivS-P~~ 85 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA---EVEEAIVGAG-TILNAKQFEDAAKAGS-RFIVS-PGT 85 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CCC
Confidence 789999999999999986 9999998654 344555543 1223445554 7899999999999995 76532 221
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
-.++++.|+++|+++++|+++-|.+-.
T Consensus 86 -----~~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 86 -----TQELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred -----CHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 245788999999999999997665543
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.5 Score=40.43 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.++|+.+++.|-+-|+. -||=|+...+ .+..+.+++ +.-++-|-+| ++-+.+++.++++.|+-=+|.|
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~---~~p~~lIGAG-TVL~~~q~~~a~~aGa~fiVsP---- 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAK---EFPEALIGAG-TVLNPEQARQAIAAGAQFIVSP---- 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHH---hCcccEEccc-cccCHHHHHHHHHcCCCEEECC----
Confidence 689999999999999985 8999998765 345566654 2223555555 7889999999999996333333
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
|++ -++++.|..+|+++++|+++-|-+
T Consensus 93 -~~~--~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 93 -GLN--PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -CCC--HHHHHHHHhCCCcccCCCCCHHHH
Confidence 222 457899999999999999865443
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.69 Score=46.15 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCCC---
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~--~L~vDaN~--- 238 (416)
..+.|+.+++.||..+-|+.+. ++ .--++.|++||+. +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556677788999999999851 22 2246678999997 7775 56666653
Q ss_pred -CCCHHHHHHHHHHHHhCCCCce------e--eecCCC--CCCHHHH--HHhHHhhhccCCCeEEeCCCCCCHHHHHHHH
Q 014886 239 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i 305 (416)
+++.++..++++.+++.++... + ...|.. +.+.... ..+.+..++.+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 4466777777777765432210 1 122322 1111100 0122223346789999998999998899999
Q ss_pred HcCCCCEEEe
Q 014886 306 KGNLADVINI 315 (416)
Q Consensus 306 ~~~a~d~v~~ 315 (416)
+.|.+|.+-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999854
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.3 Score=43.54 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+..++-+++|++.|.+ .+==-++. ++.+.++.++ +.+++|+.+|=..... -....++.| +|-+.++|+.
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd~~-lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFDYR-LAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCCcH-HHHHHHHhc-cCeEEECCCC
Confidence 456666777778877764 33333332 2233445554 4789999999775433 334455555 7999999999
Q ss_pred Cc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 320 VG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 320 ~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+| -....++++.|+++|+++-+|..
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 56788999999999999988654
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=13 Score=36.91 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+++++..+.++......+..+-+-+|.. ++|.++++++.+..++. -|.||..++++... +++++.+++.
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~-------- 148 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREA-------- 148 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHh--------
Confidence 4677777777666545455666667643 58999999999963333 47789999987654 4555555442
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-------CCCC----Cc---hHHHHHHH
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-------KLAK----VG---VLGALEII 329 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~-------k~~k----~G---i~~~l~i~ 329 (416)
+ -+++|.+| ++.|.+..+.+++.| +|++.+ -.++ +| ++.-.+.+
T Consensus 149 --~------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 149 --W------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred --C------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 0 13455555 567788899999988 588752 1122 23 34456788
Q ss_pred HHHHHcCCcEEEccCC
Q 014886 330 EVVRASGLNLMIGGMV 345 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~ 345 (416)
+.|+.+|++++-.+-+
T Consensus 207 ~~a~~~gvpiIADGGi 222 (346)
T PRK05096 207 DAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHHHHcCCCEEecCCc
Confidence 8999999999875543
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=7.6 Score=38.48 Aligned_cols=117 Identities=15% Similarity=0.298 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCC--CEEEEecC-CChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCce---
Q 014886 188 AEAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV--- 260 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~--~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~--- 260 (416)
.+..+++.++++.|. ..+-|.+. .....-.+.|+.+|+..|+..+++ |.- |.++|.+. .+.|+...
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l----~~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVREL----ENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHH----HHcCcCEEEEC
Confidence 344677888899966 99988776 344566677999999999888887 665 77776554 34554311
Q ss_pred ------eeecCCC---CCCH--HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 261 ------LFEQPVH---RDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 261 ------~iEeP~~---~~d~--~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++|++.. ..|| ..++++++ ...+||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 2465442 2233 23555543 4579999999999999999999998 4777664
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.49 E-value=7.9 Score=37.78 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred eeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG-~--------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+..++... +++++.+.++.+.+.|+..+-+.++ + +++.-.+.++++++.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 444555444 8888888888776679999999887 1 2233444566776642 2333333222
Q ss_pred CHHHHHHHHHHHHhCCCCceee----------------ecCCCC-----------------CCHHHHHHhHHhhhccC--
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVHR-----------------DDWEGLGHVSHIAKDKF-- 285 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i----------------EeP~~~-----------------~d~~~~~~l~~~~r~~~-- 285 (416)
+.++..++++.+++.++. .| +.|.+. -.++..++++ ++.
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 233566788888887654 22 223220 0133344444 356
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
.+||...=-+.+.+|+.+++..| +|.+|+--.
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta 283 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCTA 283 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEcee
Confidence 79999999999999999999988 588887544
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.47 E-value=8.7 Score=38.74 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-----ecCC--CCCCHHHHHHhHHhhhcc
Q 014886 212 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-----EQPV--HRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 212 ~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i-----EeP~--~~~d~~~~~~l~~~~r~~ 284 (416)
+++.-.+++++||+.+=.+++++ +...+.++++.+.+.++....+ +|=. ...++..+.++.+ +
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~ 186 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG----E 186 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH----H
Confidence 34555677888888642244555 2345667788888877652222 1100 1234666666653 5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-----------hHHHHHHHHHHHH-------cC---CcEEEcc
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-----------VLGALEIIEVVRA-------SG---LNLMIGG 343 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-----------i~~~l~i~~~A~~-------~g---i~~~~~~ 343 (416)
.++||..+. +.+..+..++++.| +|++. .+..| +..+..+.+.+++ .| ++++-.+
T Consensus 187 ~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdG 262 (369)
T TIGR01304 187 LDVPVIAGG-VNDYTTALHLMRTG-AAGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADG 262 (369)
T ss_pred CCCCEEEeC-CCCHHHHHHHHHcC-CCEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 689999844 89999999999977 78887 22211 1112233333322 33 8888877
Q ss_pred CCchHHHHHHHHHH
Q 014886 344 MVETRLAMGFAGHL 357 (416)
Q Consensus 344 ~~es~ig~~a~~hl 357 (416)
-+.++-.++.++.+
T Consensus 263 GI~tg~di~kAlAl 276 (369)
T TIGR01304 263 GIETSGDLVKAIAC 276 (369)
T ss_pred CCCCHHHHHHHHHc
Confidence 77666555555443
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.44 E-value=5.3 Score=37.64 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCC------CCCHH---HHHHHHHHHHhCCCCcee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~------~w~~~---~A~~~~~~L~~~~l~~~~ 261 (416)
+.++++++.|..++=+-.- .-+|-++++.+.+. +..+-+.+|++. +|... +..++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rViiGt~--av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVIIGTA--AVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEEecc--eecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4467788899988654332 24677888888888 455778899986 67432 567788888887764 33
Q ss_pred e------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEeCCCCCc-h--HHHHHHH
Q 014886 262 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 329 (416)
Q Consensus 262 i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~-~a~d~v~~k~~k~G-i--~~~l~i~ 329 (416)
| |==+.--|++.+++|+. .+.+|+.+-=-+.+..|++.+-+. |..+++.=+.-..| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 3 22333346777888875 679999988889999999998888 67777766655555 4 4555443
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.1 Score=40.33 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC----------CChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 252 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG----------~~~~~d~~~v~avr~~g~----~~~L~vDaN~~w~~~~A~~~~~~L 252 (416)
.++..+.++++. .+...+-+.++ .+++.-.+.+++||+... ++.+.+=-...|+.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 455666555543 34677888775 123444567888887532 455665555567777888999999
Q ss_pred HhCCCCceeee--c----------CCCCC-------------CHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHH
Q 014886 253 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 253 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i 305 (416)
++.++. +|. - |.... .++..++++ +.. ++||.+-=-+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 443 1 11100 022233333 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 014886 306 KGNLADVINI 315 (416)
Q Consensus 306 ~~~a~d~v~~ 315 (416)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 877 688876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=2.2 Score=39.56 Aligned_cols=97 Identities=12% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.-+.++|+++++.|.+.++. .||=++...+ ++.++.+++ +.-++-|-+| ++.+.++++..++.|+ +++..-
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~---~~p~~~IGAG-TVl~~~~a~~a~~aGA-~FivsP- 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAK---EVPEALIGAG-TVLNPEQLAQAIEAGA-QFIVSP- 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHH---HCCCCEEEEe-eccCHHHHHHHHHcCC-CEEECC-
Confidence 45789999999999999986 9999987654 333445543 2234555555 7778899999999995 776431
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 318 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 318 ~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
|+.+ .+++.|++++++++||+++-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 2233 6788899999999999986444
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.11 E-value=3.7 Score=39.24 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDV 301 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~ 301 (416)
..|+.++-+++++.|.+.|+. .||= |...++++.+++++.. ..+..++ ..-...+..++
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHHH
Confidence 346789999999999999985 8887 5555666767776542 2234443 33334567888
Q ss_pred HHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEcc
Q 014886 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 302 ~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~ 343 (416)
.++.+.| +|.+.+-....=.....+++..|+++|+.+.+.-
T Consensus 92 ~~a~~~g-~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 92 KMAADLG-VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHcC-CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 7988874432115567889999999999886644
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=5.1 Score=37.98 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=92.7
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEeCCC------------CCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE------------GYK 241 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g--~~~~L~vDaN~------------~w~ 241 (416)
+|+....+..+.+++ +++.+.|...+ -+|...-.+.+.++.+.+.+ ..+.+.+|... +|.
T Consensus 75 ipv~~~GGi~s~~~~----~~~l~~Ga~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDA----RRLLRAGADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHH----HHHHHcCCCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 344445556666554 44555676554 55644445667888888874 34667788643 232
Q ss_pred ---HHHHHHHHHHHHhCCCCceeeecCCC------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 242 ---PQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 242 ---~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
.....++++.+++.++. .++=.++. -.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 11445677778777764 23222222 235666777764 56899998888999999999987633666
Q ss_pred EEeC-CCCCchHHHHHHHHHHHHcCCcE
Q 014886 313 INIK-LAKVGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 313 v~~k-~~k~Gi~~~l~i~~~A~~~gi~~ 339 (416)
+.+- .-.-|-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 5542 22224222345567777888875
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=90.91 E-value=11 Score=33.50 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=84.6
Q ss_pred eeeeEeecCCC----HHHHHHHHHHHHHcCCCEEEEecC----CC--hhHHHHHHHHHHHhC-CCcEEEEeCCCCC--CH
Q 014886 176 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVG----KN--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 242 (416)
Q Consensus 176 v~~~~~~~~~~----~~~~~~~~~~~~~~G~~~~KiKvG----~~--~~~d~~~v~avr~~g-~~~~L~vDaN~~w--~~ 242 (416)
+++...++..+ .++..+.++++.+.|...+.+-.. .+ .+.-.+.++++++.. .++.+++..+-.+ +.
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 45555555555 778888999999999999998654 11 344466677787763 5788888776443 56
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
++..+.++.+++.++. +|-..... .+++.++++.+.. ..++|+...-...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7767777767777764 77665542 2677777765421 11456644333446777888888774
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=90.91 E-value=4.8 Score=42.69 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=98.3
Q ss_pred eeeeEeecCCCHHH-------HHHHHHHHHHcCCCEEEEecC--CChh--------HHHHHHHHHHHh-CCC-cEEEEeC
Q 014886 176 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNLK--------EDIEVLRAIRAV-HPD-SSFILDA 236 (416)
Q Consensus 176 v~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~KiKvG--~~~~--------~d~~~v~avr~~-g~~-~~L~vDa 236 (416)
+|+....++.+.++ ..+.++++...|...+=|.-. .+++ .+.+.|+.+.+. |.+ +.+.||+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 44444444455433 367788899989876554322 1221 245788888888 455 7888997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHhCCCCceeeecCCCCC------CHHH
Q 014886 237 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHRD------DWEG 273 (416)
Q Consensus 237 N~~----------------------------------w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------d~~~ 273 (416)
... | +--++.++++++++++.. +.+=-=+..| |++-
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 643 2 123678899999998864 4443344332 5666
Q ss_pred HHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-CCCCCchHHHHHHHHHHHHcCCcE
Q 014886 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 274 ~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~-k~~k~Gi~~~l~i~~~A~~~gi~~ 339 (416)
+++++. ..++||.+-=-+.+++|+.++++.+.+|..-. .+-..+-....++-...++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 68999999888999999999998654555432 121222112233445566677765
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=4 Score=37.92 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccC----CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~----~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.++++++++.|-+-|+. .+|=++...+ ++.++++++ +. ++-|-+| ++.|.++++++++.|+ +++.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-
Confidence 899999999999999986 8999998654 344555553 33 2445555 8899999999999995 7763
Q ss_pred CCCCCchHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 316 k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
-|+. -.++++.|+++|+++++|++..+.+
T Consensus 94 sP~~-----~~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 94 SPSF-----NRETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred CCCC-----CHHHHHHHHHcCCCEECCcCCHHHH
Confidence 2222 1456788999999999999865554
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=5.3 Score=37.43 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKPQ---EAVEVLEK 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDaN------~~w~~~---~A~~~~~~ 251 (416)
+..+.++ ++.+.+.|... +-+|...-.|.+.++.+++. ++ .+-+.+|+. .+|+.+ ...++++.
T Consensus 84 Gi~~~~~----~~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAED----AASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 4445544 34556678874 56674444566778888887 43 345678865 355321 33566777
Q ss_pred HHhCCCCceee-----ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 252 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 252 L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++....+ +......+++.++++++ ...+||.+.=-+.+.+++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777542222 11222345676777764 6789999999999999999988777 466555
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=6.8 Score=38.19 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~~ 244 (416)
|..++..+...++++.+.|...+-|. .| .+.++=+++|++++++ ++++-| |.|+-.....++
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 44588888888999999999888762 23 2456677889988886 455443 568876677999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
|++.++...+.|-...|+|-|-. .+.++++.+ +.+.|+..
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTE---LEMYRRFAD----AVKVPILA 207 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC---HHHHHHHHH----hcCCCEEE
Confidence 99999999998877779988653 566677764 56778754
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.69 E-value=7 Score=39.43 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=49.0
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC---------CCc--hHHHHHHHHHH---HHc
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---------KVG--VLGALEIIEVV---RAS 335 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~---------k~G--i~~~l~i~~~A---~~~ 335 (416)
++..+.++.+ +.++||..+. +.+.++++++++.| +|++.+-.. ..| +...-.+.+.+ +++
T Consensus 175 ~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 175 EPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred CHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 4555555543 4589998854 89999999999977 688855421 112 11222233333 333
Q ss_pred -------CCcEEEccCCchHHHHHHHHHH
Q 014886 336 -------GLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 336 -------gi~~~~~~~~es~ig~~a~~hl 357 (416)
+++++..+-+.++-.++.++.+
T Consensus 249 l~~~~~~~vpVIAdGGI~~~~diakAlal 277 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGTSGDIAKAIAC 277 (368)
T ss_pred hhhhcCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 6899887766666555554443
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=90.64 E-value=6.4 Score=38.25 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=75.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHH
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQ 243 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~ 243 (416)
-|..++.++...++++.+.|...+-|. .| .+.++=+++|++++++ .+++-| |.|+-.....+
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 345568888888999999999887663 23 2456678889999986 345433 56988777899
Q ss_pred HHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
+|++-++...+.|-...|+|-|.+ .+.++++.+ +.+.|+.
T Consensus 162 eAI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 162 AAIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLL 201 (285)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEE
Confidence 999999999998877679987654 455666664 5667874
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.30 E-value=15 Score=33.90 Aligned_cols=141 Identities=13% Similarity=0.234 Sum_probs=94.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+-|++.+.+.... ....+.++.+++.+++ ++.|=+-.-.+.+++... .+.+.. |
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--E
Confidence 344578888999999999999999998753 2455678888887653 466777778888876443 335543 7
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHc--CCc
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS--GLN 338 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~--gi~ 338 (416)
+=-|....+. ... + +..++++..| ++|+.++.+..+.| +|++.+=+.. +|+.... .+.+-. .++
T Consensus 87 ivsp~~~~~v--~~~-~----~~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ip 153 (206)
T PRK09140 87 IVTPNTDPEV--IRR-A----VALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVP 153 (206)
T ss_pred EECCCCCHHH--HHH-H----HHCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCe
Confidence 7667543322 222 2 2468898887 99999999999887 5999874432 4533222 333334 588
Q ss_pred EEEccC
Q 014886 339 LMIGGM 344 (416)
Q Consensus 339 ~~~~~~ 344 (416)
++.-+-
T Consensus 154 vvaiGG 159 (206)
T PRK09140 154 VFAVGG 159 (206)
T ss_pred EEEECC
Confidence 876553
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.23 E-value=12 Score=37.28 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=100.5
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 237 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~-~~~L~vDaN 237 (416)
|.-.-++..+|+.+.+.++-....+ +.|-|.+|- +++---+.|.+|++.. | .++||+=
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~-- 151 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF-- 151 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--
Confidence 4455677889999887776555555 788888872 3444556788888752 3 2345542
Q ss_pred CCCCHHHHHHHHHHHHhCCCCce-------eeecC-CCCCCHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPV-------LFEQP-VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~-------~iEeP-~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
=+.++.+++++.+++.|.... +.+-+ ..+-||+.++.+++ ... +|+.+.=++.++.|+.+.++.-
T Consensus 152 --~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~~t 225 (358)
T KOG2335|consen 152 --VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLKYT 225 (358)
T ss_pred --CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHHHh
Confidence 457778888999998876421 12322 44567888888875 455 9999999999999999999844
Q ss_pred CCCEEEeC------CC-----CCch--HH-HHHHHHHHHHcCC
Q 014886 309 LADVINIK------LA-----KVGV--LG-ALEIIEVVRASGL 337 (416)
Q Consensus 309 a~d~v~~k------~~-----k~Gi--~~-~l~i~~~A~~~gi 337 (416)
.+|+|..- |. ..+. .+ ..+-..+|++++-
T Consensus 226 G~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 226 GADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred CCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 46777531 11 1111 12 2456778888873
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.13 E-value=2.6 Score=42.45 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 213 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 213 ~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
-++|..|++.+.++|-+ -+.+|..|+.+.-+ +++++.+++ -.| ...|.+|
T Consensus 249 re~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~----------~yP------------------~l~ViaG 298 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKE----------TYP------------------DLQIIAG 298 (503)
T ss_pred ccchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHh----------hCC------------------Cceeecc
Confidence 36777788777776544 46778888887655 455554433 222 2334444
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEe-----------CCCCCc---hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 293 ESCRSLDDVKKIVKGNLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 293 Es~~~~~d~~~~i~~~a~d~v~~-----------k~~k~G---i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
++.|.++.+.+|.+| +|++.+ +++-|| .+.-.+++++|+.+|++|+-.+.+
T Consensus 299 -NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi 363 (503)
T KOG2550|consen 299 -NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGI 363 (503)
T ss_pred -ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCc
Confidence 456778889999988 587754 455566 455679999999999999876643
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=16 Score=33.86 Aligned_cols=143 Identities=13% Similarity=0.244 Sum_probs=100.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
+-..+.++..+.++.+.+-|++.+-|-... ..-.+.++++++.+++. ++.|=+-.-.|.+++.+. .+.|..
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--
Confidence 334578888999999999999999998863 35667888888876442 688999999999987554 346653
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHcC-Cc
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASG-LN 338 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~g-i~ 338 (416)
|+=-|.-..+. .+.+ ++.++|+.-| +.|+.++.+..+.| +|++.+=+.. .|. +.++ .+..-+. ++
T Consensus 91 FivsP~~~~~v---~~~~----~~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~-~~ik--~l~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFNRET---AKIC----NLYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGP-SFIK--AIKGPLPQVN 157 (213)
T ss_pred EEECCCCCHHH---HHHH----HHcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCH-HHHH--HHhhhCCCCE
Confidence 77788765443 2222 2568999885 56889999999887 6999986544 353 2222 2233343 88
Q ss_pred EEEccCC
Q 014886 339 LMIGGMV 345 (416)
Q Consensus 339 ~~~~~~~ 345 (416)
+++-+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8775543
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=17 Score=33.35 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=100.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.|+.+++.+|+ +.|=+-.-.|.+++.+. -+.|.+ |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~a----i~aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDA----AKAGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHH----HHcCCC--E
Confidence 334578888999999999999999998863 3456678888887774 77888889999987554 346654 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHcCCcEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+=-|.-..+. .+. + ++.++|..-| +.|+.++...++.| ++++.+=|.. +|....+|...- =--+++++
T Consensus 80 ivSP~~~~~v--i~~-a----~~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~-plp~~~l~ 148 (201)
T PRK06015 80 IVSPGTTQEL--LAA-A----NDSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSS-PLAGTFFC 148 (201)
T ss_pred EECCCCCHHH--HHH-H----HHcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHh-hCCCCcEE
Confidence 8888754433 332 2 2568999876 67899999999998 5998888864 442333332211 12378888
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
+.+-+
T Consensus 149 ptGGV 153 (201)
T PRK06015 149 PTGGI 153 (201)
T ss_pred ecCCC
Confidence 87654
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=89.13 E-value=2.7 Score=38.55 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
-+.+++.+.++.|-+-++. .+|=.+...+. +.++++++ +.-++-|-+| ++.|.++++++++.|+ +++.- |
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~---~~p~~~vGAG-TV~~~e~a~~a~~aGA-~FivS-P- 87 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRK---EFPDLLVGAG-TVLTAEQAEAAIAAGA-QFIVS-P- 87 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHH---HHTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-S-
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHH---HCCCCeeEEE-eccCHHHHHHHHHcCC-CEEEC-C-
Confidence 3578899999999999985 89999986653 34444544 2335666565 7899999999999995 66532 1
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++ .-++++.|+++|+++++|+++-|.+..
T Consensus 88 --~~--~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 88 --GF--DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp --S----HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 22 246789999999999999997666543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=89.03 E-value=8.9 Score=35.65 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=78.6
Q ss_pred eeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC---HHHHHH
Q 014886 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK---PQEAVE 247 (416)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN------~~w~---~~~A~~ 247 (416)
+.+..+..+.++ ++++.+.|... +=+|...-.+.+.++.+.+.+ ..+.+.+|.. .+|. .....+
T Consensus 77 v~~~GGI~~~ed----~~~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e 150 (233)
T PRK00748 77 VQVGGGIRSLET----VEALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAED 150 (233)
T ss_pred EEEcCCcCCHHH----HHHHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHH
Confidence 333444555554 44556678654 456644444555566666654 3467788874 2341 123345
Q ss_pred HHHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 248 VLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.+++.+.. .++=-.. .-.|++.++++++ .+++||...=-+.+.+|+.++.+.+.+|.+.+
T Consensus 151 ~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 151 LAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 67777776543 2222222 2235777777764 56899999888999999999999886787755
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.01 E-value=24 Score=34.40 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=86.4
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHc---CCCEEEEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~KiKvG~-----------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~ 241 (416)
.|+..++... ++++.+.+++..+. |...|-+.++. +++.-.+.+++|++.. ++.+.+=-.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 3455666666 88888877777654 68999998871 3445555677777753 2344444444467
Q ss_pred HHHHHHHHHHHHhC--CCCc-e-----------ee--ecCCC--CC----------CHHHHHHhHHhhhccC--CCeEEe
Q 014886 242 PQEAVEVLEKLYEM--GVTP-V-----------LF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 291 (416)
Q Consensus 242 ~~~A~~~~~~L~~~--~l~~-~-----------~i--EeP~~--~~----------d~~~~~~l~~~~r~~~--~iPIa~ 291 (416)
.++..++++.+.+. ++.- . -+ +.|.- .. .+..++.++. ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66667788877766 3210 0 01 22211 11 1223333332 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
-=-+.+.+|+.+++..| +|.+|+=-+-
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta~ 275 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTAL 275 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchhh
Confidence 88899999999999987 5999886543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.77 E-value=7.9 Score=37.18 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCC------------CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
|-.|+.++.+++++.|++.|++ +||==++.. +.+.++++.+..+.++.+-....-...+..++...
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 3456899999999999999985 999765432 14555666542111223333333333456777776
Q ss_pred HHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccC
Q 014886 305 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 305 i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
.+.+ +|++.+-....-+..+++++..|+++|+.+.++-+
T Consensus 92 ~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 92 SGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred hcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6655 78877754433377889999999999999877643
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=88.76 E-value=17 Score=35.96 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=94.0
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC---Ch--------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK---NL--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~---~~--------~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
.|+.+++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.+++||+.. ++.+.+=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 345566666778888888888878899999999862 11 12246677888753 3445544433332 4
Q ss_pred HHHHHHHHHhCCCCce-----eeecCCCCC------C---------HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 245 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
...+++.+++.++.-. +..-....+ . ...++.+++ +++..++||.+.=-+.+.+|+.++
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777776554210 111111000 0 011222222 234668999998899999999999
Q ss_pred HHcCCCCEEEeCCCCC--c---hHH-HHHHHHHHHHcCCc
Q 014886 305 VKGNLADVINIKLAKV--G---VLG-ALEIIEVVRASGLN 338 (416)
Q Consensus 305 i~~~a~d~v~~k~~k~--G---i~~-~l~i~~~A~~~gi~ 338 (416)
+..| +|.+|+=-+-. | +.. ...+.++.+++|..
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9987 59998864432 3 222 23456667777764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=88.71 E-value=7.6 Score=38.61 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
..|+.++.+++++.|++.|+. .||= +....+++.++++.+... +..+-..+.=...+..+++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 456899999999999999985 8998 444456777777654321 22222223223457889999
Q ss_pred HHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc
Q 014886 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 304 ~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
+.+.| +|.+.+-.. +. .....+.+.+|++.|..+...-
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 88887 788886543 33 5567889999999999976543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.64 E-value=6.8 Score=36.41 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=79.4
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-C-CcEEEEeCCC------CC---CHHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDANE------GY---KPQEAVEV 248 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~-~~~L~vDaN~------~w---~~~~A~~~ 248 (416)
...+..++++ ++++.+.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+..++
T Consensus 78 ~~GgI~~~e~----~~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T cd04732 78 VGGGIRSLED----IERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEEL 151 (234)
T ss_pred EeCCcCCHHH----HHHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHH
Confidence 3344456544 45566678654 456755556777788887774 3 4666777542 23 12344567
Q ss_pred HHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 249 LEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++.+++.+.. .++=-.+ ...+++.++++++ .+++||...=-+.+.+|+.++++.| +|.+.+
T Consensus 152 ~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 152 AKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 7778777654 3333333 2235677777764 6789999999999999999999876 566654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=88.50 E-value=20 Score=33.01 Aligned_cols=142 Identities=15% Similarity=0.269 Sum_probs=100.7
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.++.+++.+|+ +.|=+-.-.|.+++.+.. +.|-+ |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~----~aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAV----DAGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHH----HcCCC--E
Confidence 334578889999999999999999988853 4566778888888874 788888999999976553 35643 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHH-HHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~-i~~~A~~~gi~~ 339 (416)
+=-|....+ ..+.+ ++.++|..-| +.|+.++...++.| +|++.+=|.. .|....+| +..-- -++++
T Consensus 84 ivsP~~~~~---v~~~~----~~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGLTPE---LAKHA----QDHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCCCHH---HHHHH----HHcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 877765332 22322 2568998884 78999999999998 5998888866 45233332 22222 47888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+-+
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 886654
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=88.39 E-value=20 Score=35.47 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=85.4
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------~~-~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
+|+.+++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.+++|++.. ++.+.+=-+..+ .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 455667777788888888888888899999997651 11 12345667777753 355665544434 34
Q ss_pred HHHHHHHHHhCCCCceeeec--CCC--CCCHH------------------HHHHhHHhhhccCCCeEEeCCCCCCHHHHH
Q 014886 245 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDWE------------------GLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEe--P~~--~~d~~------------------~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~ 302 (416)
..++++.+++.++. .|-- -+. .-|++ .++.+++ +++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 55777888877653 2211 000 01111 1222222 2346689999988999999999
Q ss_pred HHHHcCCCCEEEeCC
Q 014886 303 KIVKGNLADVINIKL 317 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~ 317 (416)
+++..| +|.+|+=-
T Consensus 256 e~l~aG-A~~V~v~t 269 (334)
T PRK07565 256 KMLLAG-ADVVMIAS 269 (334)
T ss_pred HHHHcC-CCceeeeh
Confidence 999988 69988753
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=17 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCEEEEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-----
Q 014886 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--~~--~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (416)
++++.+.+.|...+=+-... .+ +...+.++.+++. +++.++++.+ +.+++. .+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCC--EEEcCCc
Confidence 44667778898866654432 12 4555677788876 7888988876 666653 34455543 33
Q ss_pred --ecC---CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 --EeP---~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.. ....+++.+++++. ..++||..+=-+.+..++.++++.| +|++.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 211 12234555666653 5689999988999999999999988 688866
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=8.9 Score=36.60 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred HHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHhCCC
Q 014886 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN~~-----------w---~~~~A~~~~~~L~~~~l 257 (416)
++++.+.|+..+ -+|...-++...++.+.+.++ .+.+.+|...+ | +.....++++.+++.++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 455566788754 455434456677777777643 46788896543 3 12234677788888765
Q ss_pred Cceee------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHH-HcCCCCEEE
Q 014886 258 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV-KGNLADVIN 314 (416)
Q Consensus 258 ~~~~i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i-~~~a~d~v~ 314 (416)
. ..+ ++...-.|++.++++++ ..++||.+.=-+.+.+|+.+++ +.| +|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~G-vdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLG-ADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCC-CCEEE
Confidence 4 233 23333346787888764 6789999998999999999998 455 56554
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=88.11 E-value=13 Score=36.39 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=71.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcE--EEEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSS--FILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~--L~vDaN~~w~~~~ 244 (416)
|..++.++...++++.+.|.-.+-|. .| .+.++=+++|++++++ .+++- -|.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 44455557777888999999888763 22 1456667889888886 34543 3679987778999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeE
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPI 289 (416)
|++.++...+.|-...|+|-|.. .+.++++.+ +.+.|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999988877679987644 455677764 455666
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.40 E-value=11 Score=37.50 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC----------CChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG----------~~~~~d~~~v~avr~~g~----~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
..++..+.++++. .+...+-+.++ .+.+.-.+.+++||+... ++.+.+=-+-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4577777777664 46788888775 133455567888998643 36777666666888888899999
Q ss_pred HHhCCCCce-----e-----eecCCC-------------CCCHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHHH
Q 014886 252 LYEMGVTPV-----L-----FEQPVH-------------RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 252 L~~~~l~~~-----~-----iEeP~~-------------~~d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i~ 306 (416)
+++.++.-. + ++.+.. +-.++..++++ ++. ++||.+-=-+.+.+|+.+++.
T Consensus 234 l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~l~ 309 (344)
T PRK05286 234 ALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEKIR 309 (344)
T ss_pred HHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 988765311 1 111100 00122223333 345 689998888999999999998
Q ss_pred cCCCCEEEeC
Q 014886 307 GNLADVINIK 316 (416)
Q Consensus 307 ~~a~d~v~~k 316 (416)
.| +|.||+-
T Consensus 310 aG-Ad~V~v~ 318 (344)
T PRK05286 310 AG-ASLVQIY 318 (344)
T ss_pred cC-CCHHHHH
Confidence 77 6877663
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=87.35 E-value=17 Score=34.16 Aligned_cols=130 Identities=20% Similarity=0.209 Sum_probs=82.2
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCC-----------CCC--
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDAN-----------EGY-- 240 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN-----------~~w-- 240 (416)
+|+.+..++.+.+++ +++.+.|...+ -+|...-++.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 344555566676554 44455687654 455444455566666666543 477889865 234
Q ss_pred -CHHHHHHHHHHHHhCCCCceee---ec--CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 -KPQEAVEVLEKLYEMGVTPVLF---EQ--PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 -~~~~A~~~~~~L~~~~l~~~~i---Ee--P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+..+..++++.+++.++...-+ .. .....+++.++++.+ .+++|+.+.=-+.+++++.++++...+|.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 2445678888888877641111 11 112235666677653 5789999988899999999999875577776
Q ss_pred e
Q 014886 315 I 315 (416)
Q Consensus 315 ~ 315 (416)
+
T Consensus 222 v 222 (243)
T cd04731 222 A 222 (243)
T ss_pred E
Confidence 5
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=87.27 E-value=14 Score=34.32 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCC------CCCCH---HHHHHHHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKP---QEAVEVLEK 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDaN------~~w~~---~~A~~~~~~ 251 (416)
+..+.++ ++++.+.|...+ =+|...-.|.+.+..+.+. +. .+-+.+|.. .+|.. ....++++.
T Consensus 80 GI~~~ed----~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 153 (230)
T TIGR00007 80 GIRSLED----VEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKR 153 (230)
T ss_pred CcCCHHH----HHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHH
Confidence 4445444 455667888754 4554344566667776665 43 366677765 23421 233567777
Q ss_pred HHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 252 LYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 252 L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++. .++=-.+ ...|++.++++++ ..++||.+.=-+.+.+|+.++.+.| +|.+.+
T Consensus 154 ~~~~g~~-~ii~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 154 LEELGLE-GIIYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred HHhCCCC-EEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 7777654 2332222 2235676777764 5789999998999999999988876 577655
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.14 E-value=16 Score=35.42 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcE----EE-E----e----CCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSS----FI-L----D----ANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~----L~-v----D----aN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++. |- + | ....+ ++++|.+|++...-
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tgv 167 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGC 167 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCc
Confidence 3455667889999999766 4677888887777652 11211 11 1 1 11224 59999999987642
Q ss_pred CCCCc-------eeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 MGVTP-------VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ~~l~~-------~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
--+.+ .|-. |.-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 168 D~LAvaiGt~HG~Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi~ 229 (283)
T PRK07998 168 DMLAVSIGNVHGLEDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYKV-AKVNIA 229 (283)
T ss_pred CeeehhccccccCCCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcCC-cEEEEC
Confidence 10100 1322 4567888888875 67999884 566667788999999884 444553
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=86.93 E-value=35 Score=33.95 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+++++..+++++....-...+-+-+|.. +.|.+|++++.++++.. -|.||..++++... ++.++.+.+. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 4677766666554333334455566632 58999999999986554 47789999987543 3444444331 1
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-------CCC----Cc---hHHHHHHH
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-------LAK----VG---VLGALEII 329 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k-------~~k----~G---i~~~l~i~ 329 (416)
| +.+|..| ++.|.++.+++++.| +|++.+- .++ +| ++...+++
T Consensus 149 -p--------------------~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 -P--------------------EHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred -C--------------------CCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 1 2445444 567889999999988 5887543 122 12 23345667
Q ss_pred HHHHHcCCcEEEccCC
Q 014886 330 EVVRASGLNLMIGGMV 345 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~ 345 (416)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 7777778898876654
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=86.88 E-value=13 Score=34.66 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC-C-cEEEEeCCCC------------C---CH
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-D-SSFILDANEG------------Y---KP 242 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~-~-~~L~vDaN~~------------w---~~ 242 (416)
+..+..+.+++ +++.+.|+..+ -+|...-.+.+.++.+.+.++ . +.+.+|.... | +.
T Consensus 79 ~~ggi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~ 152 (232)
T TIGR03572 79 VGGGIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATG 152 (232)
T ss_pred EECCCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCC
Confidence 33444455543 34556787764 455434456677777777643 3 5667886542 3 23
Q ss_pred HHHHHHHHHHHhCCCCceeeec-----CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++.++++.+++.++....+-. -....+++.++++++ ..++||.+.=-+.+..++.+.+....+|.+.+
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4467888888888764111111 112234666777653 67899999888999999999444434677654
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.55 E-value=36 Score=33.72 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---c
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 264 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---e 264 (416)
+..+.++.+++.|.+.+-+... .+.+.-.+.++.+++.+|++.+++ ...-+.++|.+. .+.+.. +|= -
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 3456677788899998887764 233455678899999888888887 333566766544 345543 321 0
Q ss_pred C-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
| ....++..+..+.+.. ...++||.++--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 1 1122444455554322 24579999999999999999999988 488776
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=12 Score=35.16 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=78.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC--HHHHHHHHHHH
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKL 252 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN------~~w~--~~~A~~~~~~L 252 (416)
.++.+.++ ++++.+.|.. |+-+|...-.|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+
T Consensus 82 GGirs~ed----v~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l 155 (241)
T PRK14024 82 GGIRDDES----LEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERL 155 (241)
T ss_pred CCCCCHHH----HHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHH
Confidence 34445544 5667778887 4556644445666666666653 3455667763 2564 33557788888
Q ss_pred HhCCCCceee------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 014886 253 YEMGVTPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (416)
Q Consensus 253 ~~~~l~~~~i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~ 315 (416)
++.++. .++ ++-....|++.++++.+ ..++||.+.=-+.+.+|+.++.+. ..+|.+.+
T Consensus 156 ~~~G~~-~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 156 DSAGCS-RYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HhcCCC-EEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 888764 222 33333346888888764 578999998889999999988642 23666654
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=86.36 E-value=23 Score=32.79 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=80.5
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCC
Q 014886 218 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295 (416)
Q Consensus 218 ~~v~avr~~g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~ 295 (416)
+.++.+++.. ..+.+-++ +.+.++.++.++.|.+. + ..+||=|+...-++..++|+ +.++++.+. .+
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~-----~~gi~v~~T-~V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLS-----EEGIKTNVT-AI 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHH-----HcCCceeeE-Ee
Confidence 4566666653 33555565 45777777777777665 4 25999999874444445554 237888766 47
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCC---c---hHHHHHHHHHHHHcCCc---EEEccC
Q 014886 296 RSLDDVKKIVKGNLADVINIKLAKV---G---VLGALEIIEVVRASGLN---LMIGGM 344 (416)
Q Consensus 296 ~~~~d~~~~i~~~a~d~v~~k~~k~---G---i~~~l~i~~~A~~~gi~---~~~~~~ 344 (416)
++..+.....+.| ++++.|-+.++ | +.-..++..+++.+|++ ++.+..
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 8999999999998 59999988883 3 44467899999999988 555554
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=86.31 E-value=30 Score=32.59 Aligned_cols=170 Identities=24% Similarity=0.260 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCh------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~------~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (416)
+.++..+.++.+.+.|+..+-+-.+... +.+.+.++.+++.+++.++.+.+... .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6777778888888889888777666444 67788899999887777776655443 3445556666653
Q ss_pred eeeecCCCCC--------------CHHHHHHhHHhhhccCCCeEEeCC-CCC----CHHHH----HHHHHcCCCCEEEeC
Q 014886 260 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SCR----SLDDV----KKIVKGNLADVINIK 316 (416)
Q Consensus 260 ~~iEeP~~~~--------------d~~~~~~l~~~~r~~~~iPIa~dE-s~~----~~~d~----~~~i~~~a~d~v~~k 316 (416)
++-=+++.. +++...+..+.++ +.++.+...= ..+ ++..+ +.+.+.| +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333332 2222222221122 4466666542 333 33333 3344556 6777776
Q ss_pred CCCCc-hH--HHHHHHHH-HHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 317 LAKVG-VL--GALEIIEV-VRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 317 ~~k~G-i~--~~l~i~~~-A~~~g-i~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
-+ .| .+ +..+++.. .+..+ +++-+|+-...+++. +-.++|......++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~--an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAV--ANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH--HHHHHHHHcCCCEEE
Confidence 54 36 44 34444444 44455 778887764444443 333444333344444
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=86.25 E-value=13 Score=36.96 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHH
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDD 300 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d 300 (416)
+..|+.++.+++++.|.+.|+. .||= |....+++.++.++.. ..+..++ +.=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 3456899999999999999985 8887 1222356666666432 2234444 3333457889
Q ss_pred HHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 301 VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 301 ~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+..+.+.| +|++.+-. .+. ....++.+.+|+++|+.+...-+
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99988887 68877653 334 55678899999999999876443
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.92 E-value=47 Score=34.99 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---cCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (416)
.+.++.+++.|...+-|-.. .+...-++.|+.+|+.+|++.+++ ..-.|.++|.... +.|.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 67788889999999988874 222334678999999888888877 4556777765543 45653 552 121
Q ss_pred C-----------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
. ..++..+.++++.. ++.++||..|--+.+..|+.+++..|+ |.+++--..
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~GA-~~Vm~G~~~ 376 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALGA-DCVMLGSLL 376 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcCC-CEEEECchh
Confidence 0 11333434443322 356899999999999999999999984 888774433
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.91 E-value=17 Score=34.23 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCC------CCCH---HHHHHHHHHHHhCCCCcee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN~------~w~~---~~A~~~~~~L~~~~l~~~~ 261 (416)
+.++++.+.|...+ -+|...-+|.+.++.+.+.+ ..+-+.+|+.. +|.. -+..++++.++++++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 34566777887664 55654456788888888885 45778899843 3532 2335677777777653 33
Q ss_pred eecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 262 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 262 iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|=--+.. .|++-++++.+ .+++||...=-+.+.+|+.++.+.| ++.+.+
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 3333332 25666677653 5789999988899999999999877 455543
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=85.31 E-value=30 Score=33.60 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE------e-c---C-------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKL------K-V---G-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 242 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~Ki------K-v---G-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN-~~w~~ 242 (416)
.++..+...++++.+.|...+-| | . | .+.++=+++|++++++ ++++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 57888888899999999998888 1 1 1 2456667788888875 455544 56764 35679
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhcc-CCCeEEe
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAA 291 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~-~~iPIa~ 291 (416)
++|++.+++..+.|-...|+|-+. .+.+.++++.+.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999887767998422 2355566665422110 0357654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.28 E-value=10 Score=36.38 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec--CC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 312 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a---~d~ 312 (416)
.++.++.+++++.|.+.|+. .||= |. .+++++.++.+.+ ...++.+..== -.+..++..+.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~---~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIAR---EVLNAEICGLA-RAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHH---hCCCCEEEEEc-cCCHhhHHHHHHhCCCCCCCE
Confidence 56899999999999999985 8887 54 4556666666653 12345554311 134678888887763 677
Q ss_pred EEeCCC----------CCc----hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 313 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 313 v~~k~~----------k~G----i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
+.+=.+ +++ +....+++..|+++|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766322 122 23456789999999999998876543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=84.96 E-value=18 Score=33.15 Aligned_cols=143 Identities=16% Similarity=0.298 Sum_probs=93.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.|+.+++.+|+ +.|=+-.-.|.+++.+..+ .|.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 445678888899999999999999988863 3446778888888886 5677888889988766543 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC-chHHHHHHHHHHHHcCCcEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~-Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+=-|.-..+ +.+.+. +.++|..-| +.|+.++..+++.| ++++.+=|... |....+|...- ---+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~-p~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRG-PFPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHT-TTTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhc-cCCCCeEE
Confidence 878864333 223332 458898875 68999999999998 59998888764 74444443321 12368888
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86644
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.93 E-value=21 Score=37.57 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=70.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHH
Q 014886 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 231 ~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i 305 (416)
+|+|-+--+-+.++ .+.++.|-+.++. .||=-... ..++.++++++ .. ++||.+| ++.|.++++.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 55554433334444 6777788787864 67743321 12345566553 33 6899998 889999999999
Q ss_pred HcCCCCEEEeCCC-----------CCc---hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 306 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 306 ~~~a~d~v~~k~~-----------k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+.| +|++.+-.+ -+| ++...++++.|+++|++++..+-+.++
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~ 356 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS 356 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH
Confidence 998 599865421 133 233457888899999999995444343
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=84.40 E-value=13 Score=35.25 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC-------------C--CHHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG-------------Y--KPQEAVEVLE 250 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~-------------w--~~~~A~~~~~ 250 (416)
+++++...++++.+.|-..+||.=+ .+-+++|+++++++==+-=++|+... . ..+++++-++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 5688888899999999999998854 34567888888874112335777311 1 2568889999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.+++.|....|+|-+ +.+..+++++ +.++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988776799965 3555677764 67889875
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.28 E-value=9.5 Score=34.73 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecC--CC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 313 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~--d~~~~i~~~a~d~v 313 (416)
..+.++|.++++.+ +.++ .|||-. +. +.-++.++.+++ ...+..+..|=.+.+.. ++..+.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v--~~iev~~~l~~~~g~~~i~~l~~---~~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYV--DIIEIGTPLIKNEGIEAVKEMKE---AFPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCe--eEEEeCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 35789999999999 6676 499995 32 223445555553 12356777776555654 677888888 5888
Q ss_pred EeCCCCCchHHHHHHHHHHHHcCCcEEEc
Q 014886 314 NIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 314 ~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~ 342 (416)
.+...- +.....++.+.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 776543 2223467888999999999875
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=84.11 E-value=8.5 Score=35.51 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeec---CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+++++..++...+-+++.+.|+|. ...+-+.+-.+++++ .+++|+..|=-+.+.++++++++.| +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 6789999999999988888789998 333345566666654 6689999999999999999998887 687754
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=12 Score=36.23 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=46.1
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++..+||++. ....+.+.+.++++.| ++.+|+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3568898854 3457888899999987 799999998875 3457899999999999873
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=83.80 E-value=27 Score=35.51 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeC----C-
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA----N- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~-~~L~vDa----N- 237 (416)
..+.|+++++.||..|-|+.+. ++ .--++.|++||++ +++ +-+++-. +
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 3556677788999999999751 12 1235678999997 666 3344432 1
Q ss_pred --CCCCHHHHHHHHHHHHhC------CCCceeeecCCC-----------CCCHH-HHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWE-GLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~------~l~~~~iEeP~~-----------~~d~~-~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
..-+.++++.+.+.|+.. ++ .+|+==.. ..... ....+.+.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777752 23 23331110 00000 01112222334677888876666 5
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
.++..++++.|.+|.|-+
T Consensus 324 ~~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 324 RELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 678888999998998744
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.67 E-value=15 Score=35.77 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=47.3
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|-+..- +..++++.++|+++|+.+
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3668999966 4566899999999987 799999999874 556899999999999987
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=83.55 E-value=13 Score=35.97 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=47.2
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++- ....+.+++.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+
T Consensus 66 ~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 66 ERASVPVALHLDHGSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4668999965 4556889999999998 899999999874 556899999999999987
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=83.42 E-value=44 Score=32.51 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+++...+.++.+++.++. .|+==+.. ..++.++++++ ++++||..-+. .+.++.+.+.+.| +|++.
T Consensus 127 ~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~v-~s~~~a~~a~~~G-~d~I~ 198 (299)
T cd02809 127 DREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKGI-LTPEDALRAVDAG-ADGIV 198 (299)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEeec-CCHHHHHHHHHCC-CCEEE
Confidence 455555555665555543 44422111 12455666653 67899998764 7788898888887 68877
Q ss_pred eCCC--C---CchHHHHHHHHHHHHc--CCcEEEccCCchHHHHHHHHH
Q 014886 315 IKLA--K---VGVLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 315 ~k~~--k---~Gi~~~l~i~~~A~~~--gi~~~~~~~~es~ig~~a~~h 356 (416)
+.-. + .|...+..+.++++.. +++++..+-+.++.....++.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 6431 1 2333344455555655 499988777766655544443
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=82.98 E-value=39 Score=31.15 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEEecCC--Chh--HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee--ec-
Q 014886 192 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 264 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--~~~--~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--Ee- 264 (416)
++++.+.+.|-..+=+.... .+. ...+.++++++.+ ++.++++.+ +++++.+ +.+.++. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~~----a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEALN----AAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHHH----HHHcCCC--EEEccCc
Confidence 45677778898876664431 122 5556777888877 788888654 6676533 4445653 44 20
Q ss_pred ---C----CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 265 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 265 ---P----~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ ....+++.++++++ ..++||...=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 01124555666653 5689999988899999999999988 788765
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=82.84 E-value=29 Score=33.03 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCCCC---CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
..|+.++.+++++.|.+.|+. .||=-+|. .+++.++.+.+ ...+..+..- .-.+..++..+.+.| ++.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999985 89984442 23455555543 2334545433 224678888888876 68777
Q ss_pred eCCCCC--------c------hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 315 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 315 ~k~~k~--------G------i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+=.+.. | +....+++..|+++|+.+.++++..+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 135 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR 135 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC
Confidence 632211 1 234567899999999999888876543
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=20 Score=34.80 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=45.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++. ....+.+.+.+.++.| ++.+++|-+..- +..++++.++|+.+|+.+
T Consensus 71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 71 ARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4678899865 3466788899999987 799999988764 445789999999999987
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=82.34 E-value=16 Score=35.38 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.1
Q ss_pred ccCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~-iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.+ +||++. ....+.+.+++.++.| ++.+++|.+... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3556 899976 5556788889999887 799999999886 3347899999999999764
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.25 E-value=14 Score=35.95 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=47.5
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3668999976 4466789999999998 799999999875 5568999999999999873
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.23 E-value=44 Score=34.66 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee---ec
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---EQ 264 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---Ee 264 (416)
+..+.++.+++.|...+-|-.. .+-..-.+.|+.+|+.+|+..+++ -...|.++|....+ .|.. +| =-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 3456677788899999988874 222445566888888888887776 44557777765544 4443 33 11
Q ss_pred C-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
| +-..++..+.++++.. +..++||.+|--+.+..|+.+++..|+ +.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~GA-~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAGA-DAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 2 1112334444443322 256899999999999999999999984 887763
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=82.16 E-value=24 Score=35.77 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=69.4
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+| .|+.++-+++++.|.+.|+. .||= |... ++++.++.+.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 5565 47899999999999999985 8996 5333 34455666543 2223334332 33457889988888
Q ss_pred CCCCEEEeCCCC--------Cc------hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 308 ~a~d~v~~k~~k--------~G------i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
| ++.+.+=... .| +....+.+.+|++.|+.+.++++..+
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 7 5776653221 11 23355689999999999988765433
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=81.71 E-value=51 Score=34.50 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee----
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (416)
+..+.++.++++|.+.+=+... ...+.-++.++.+++.+|++.+++| ..-|.+++..+. +.|.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~----~~G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLL----EAGAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHH----HhCCC--EEEECCc
Confidence 3456778888999999888876 3346677789999988999999983 244666665544 34432 333
Q ss_pred -------cCC---CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 264 -------QPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 264 -------eP~---~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.-+ -........++.+.++ ..++||.+|--+.+..|+.+.+..|+ |.+.+
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA-~~vm~ 356 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGA-SNVMV 356 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCC-CEEee
Confidence 111 1112222223322222 44899999999999999999999985 66654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.67 E-value=21 Score=34.72 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EEE-E--------eCCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SFI-L--------DANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L~-v--------DaN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.+++.+.+.+. .-++ .|- | +...-| ++++|.+|.++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 3455678899999999977 5778888888877652 1111 110 1 112226 59999999987631
Q ss_pred ----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.|. |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~Gi-~KiNi~ 233 (285)
T PRK07709 171 DCLAPALGSVHGP---YKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLGT-SKINVN 233 (285)
T ss_pred CEEEEeecccccC---cCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 222 43445 457777888764 67899985 456666788999999884 334554
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=81.55 E-value=17 Score=34.35 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=85.1
Q ss_pred cCCC-HHHHHHHHHHHHHcCCCEEEEe---cC------CChhHHHHHHHHHHHh--CCCcE--EEEeCCC--CCCHHHHH
Q 014886 183 PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSS--FILDANE--GYKPQEAV 246 (416)
Q Consensus 183 ~~~~-~~~~~~~~~~~~~~G~~~~KiK---vG------~~~~~d~~~v~avr~~--g~~~~--L~vDaN~--~w~~~~A~ 246 (416)
|..+ +..+...++++.+.|.-.+-|. .| .++++=+++|++++++ .+++- -|-|+.. ....++|+
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 4444 8889999999999999888664 32 2567788899999986 35654 4678854 66789999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.++...+.|....|+|-+.. .+.++++.+ +.+.|+..-.. ....++.++.+.| +..+..
T Consensus 159 ~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~ 218 (238)
T PF13714_consen 159 ERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSY 218 (238)
T ss_dssp HHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEE
T ss_pred HHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEE
Confidence 999999999877678888854 444667664 45788877553 3224566666666 455543
|
... |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.35 E-value=24 Score=34.23 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=47.1
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++. ....+.+.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3678999965 4566899999999998 799999999875 556899999999999877
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=81.22 E-value=38 Score=34.65 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=90.2
Q ss_pred eeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG-~--------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++..++... +++++.+.++.+.+.|+..|-+.++ + +++.-.+.++++++.. ++.+.|=-.-
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-- 177 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-- 177 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC--
Confidence 344555555 7888888888887889999998876 1 2233444566666642 3444444432
Q ss_pred CHHHHHHHHHHHHhCCCCcee------------ee----cC-CCCC--------------CHHHHHHhHHhhhccC---C
Q 014886 241 KPQEAVEVLEKLYEMGVTPVL------------FE----QP-VHRD--------------DWEGLGHVSHIAKDKF---G 286 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~------------iE----eP-~~~~--------------d~~~~~~l~~~~r~~~---~ 286 (416)
+..+...+++.+++.++.-.- +| .| +... .++..++++ ++. +
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~----~~~~~~~ 253 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIA----RDPETRG 253 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHH----hccccCC
Confidence 233355677878776643111 12 13 1110 122233333 344 7
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--c--hH-H-HHHHHHHHHHcCC
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--G--VL-G-ALEIIEVVRASGL 337 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~--G--i~-~-~l~i~~~A~~~gi 337 (416)
+||.+-=-+.+.+|+.+++..| +|.||+=-+-. | +. . ...+.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999988899999999999988 58888764432 4 22 1 1234456666764
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=81.11 E-value=27 Score=35.17 Aligned_cols=103 Identities=22% Similarity=0.386 Sum_probs=70.1
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+| .|+.++-+++++.|.+.|+. .||= |.. +++++.++.+.+ ......|+.-= -.+..++..+++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~~-r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSLA-RALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEEc-ccCHHHHHHHHHc
Confidence 5555 45889999999999999985 8997 654 345655666653 23345555321 3568899999988
Q ss_pred CCCCEEEeCCC-----------CC--c-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 308 NLADVINIKLA-----------KV--G-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 308 ~a~d~v~~k~~-----------k~--G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
| ++.+.+=.. +. . +..+.+.+.+|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 7 677776211 11 1 34467889999999999877643
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=81.09 E-value=26 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=47.0
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4668999965 4567889999999998 799999999874 456889999999999987
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=80.91 E-value=31 Score=34.74 Aligned_cols=106 Identities=15% Similarity=0.233 Sum_probs=69.3
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCceeeecCCC--C-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQPVH--R-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEeP~~--~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+|+ |+.++-+++++.|.+.|+. .||==+| . .+++..+.+.+ ...+..++.= .-.+..++..+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVA---LGLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHH---cCCCcEEEEE-cCCCHHHHHHHHcC
Confidence 55554 7899999999999999985 9999443 2 23455666653 1223334321 22467888888887
Q ss_pred CCCCEEEeCCCCC--------c------hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 308 NLADVINIKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 308 ~a~d~v~~k~~k~--------G------i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
| ++.+.+=.... | +....+++++|+++|+.+.+++...+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~ 137 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS 137 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC
Confidence 6 56665443321 1 22345789999999999988876543
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=80.44 E-value=54 Score=31.12 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=73.8
Q ss_pred eecCCCHHHHHHHHHHHHHc-CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 181 TIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+.+..+.+|.+..++-.++. |-+-+|+.|-.|. .+-.+.|++.++. -.++..+- -+.=|+. .+++|++
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlp--yc~dd~~----~ar~l~~ 142 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLP--YCTDDPV----LAKRLED 142 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEE--EeCCCHH----HHHHHHH
Confidence 55667778766655555554 5788999985322 2334455555554 23333330 0111344 4566677
Q ss_pred CCCCceeeecC----CC----CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 MGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ~~l~~~~iEeP----~~----~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++.. .+ -| +- ..+.+-++.+++ ..++||..|=-+.+++|+.+.++.|+ |.+.+-
T Consensus 143 ~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelGA-dgVlV~ 204 (248)
T cd04728 143 AGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELGA-DAVLLN 204 (248)
T ss_pred cCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 7754 55 33 11 123555566653 56899999999999999999999995 776553
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=80.38 E-value=34 Score=33.20 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EE----------EEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SF----------ILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L----------~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++ .| ..+.+ ..+ ++++|.+|.++.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH
Confidence 4456778899999999977 5678888887777652 1111 11 11112 225 599999998865
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 166 gvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi~ 230 (282)
T TIGR01858 166 GVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELGI-CKVNVA 230 (282)
T ss_pred CcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 31 232 45555 457888888875 67899885 456666788999998874 334443
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=82 Score=33.19 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~g~~~~L~vDaN~----~w~--~~~A-~~~~ 249 (416)
.+.+++...++.+.+.||..+-+--|.. -+.+.+|++++|+..++.+|..=..+ +|. +++. ..++
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 3678888888888889999988864422 25688999999999888777543332 232 2333 4477
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC---CeEEe-CCCCCCHHHHH----HHHHcCCCCEEEeCCCCCc
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG 321 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~---iPIa~-dEs~~~~~d~~----~~i~~~a~d~v~~k~~k~G 321 (416)
+...+.++.+.-|=+|+.. .+.+....+..++... .-|+. .-..++.+.+. ++.+.| +|.+.++=+- |
T Consensus 104 ~~a~~~Gidi~RIfd~lnd--v~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-G 179 (499)
T PRK12330 104 EKSAENGMDVFRVFDALND--PRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-A 179 (499)
T ss_pred HHHHHcCCCEEEEEecCCh--HHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-c
Confidence 7777888876778888864 4444333222222111 12322 12356666543 455566 6888887654 6
Q ss_pred -hH--HHHHHHHHHHH-c--CCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 322 -VL--GALEIIEVVRA-S--GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 322 -i~--~~l~i~~~A~~-~--gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
++ .+.++....++ . ++++.+|+-...+++.+ -.++|.-....++|
T Consensus 180 ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~A--n~laAieAGad~vD 230 (499)
T PRK12330 180 LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLV--SLMKAIEAGVDVVD 230 (499)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHH--HHHHHHHcCCCEEE
Confidence 43 44555544444 4 69999998755555443 34444333344444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 416 | ||||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 2e-58 | ||
| 3ik4_A | 365 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-57 | ||
| 3s5s_A | 389 | Crystal Structure Of Putative Mandelate RacemaseMUC | 6e-54 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 2e-50 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 6e-49 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 2e-47 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 9e-36 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 1e-32 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 6e-29 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 1e-22 | ||
| 1jpd_X | 324 | L-Ala-DL-Glu Epimerase Length = 324 | 4e-19 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 7e-19 | ||
| 3eez_A | 378 | Crystal Structure Of A Putative Mandelate RacemaseM | 3e-18 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 4e-18 | ||
| 3rit_A | 356 | Crystal Structure Of Dipeptide Epimerase From Methy | 7e-18 | ||
| 3fcp_A | 381 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 1e-17 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 1e-17 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 3e-17 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 4e-17 | ||
| 2zc8_A | 369 | Crystal Structure Of N-Acylamino Acid Racemase From | 5e-17 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 3e-16 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 4e-16 | ||
| 2ggj_A | 375 | The Mutant Y218c Of Deinococcus Radiodurans N-Acyla | 5e-16 | ||
| 2ggg_A | 375 | The Mutant A68c-D72c Of Deinococcus Radiodurans N-A | 6e-16 | ||
| 1r0m_A | 375 | Structure Of Deinococcus Radiodurans N-Acylamino Ac | 7e-16 | ||
| 2ggi_A | 375 | The Mutant E149c-A182c Of Deinococcus Radiodurans N | 1e-15 | ||
| 2pgw_A | 384 | Crystal Structure Of A Putative Muconate Cycloisome | 1e-15 | ||
| 1bkh_A | 369 | Muconate Lactonizing Enzyme From Pseudomonas Putida | 2e-14 | ||
| 2muc_A | 373 | Muconate Cycloisomerase Variant F329i Length = 373 | 2e-14 | ||
| 1muc_A | 373 | Structure Of Muconate Lactonizing Enzyme At 1.85 An | 2e-14 | ||
| 3muc_A | 369 | Muconate Cycloisomerase Variant I54v Length = 369 | 2e-14 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 2e-14 | ||
| 1f9c_A | 372 | Crystal Structure Of Mle D178n Variant Length = 372 | 7e-14 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 9e-14 | ||
| 1sja_A | 368 | X-Ray Structure Of O-Succinylbenzoate Synthase Comp | 1e-13 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 2e-13 | ||
| 4izg_A | 391 | Crystal Structure Of An Enolase (mandelate Racemase | 2e-13 | ||
| 4h83_A | 388 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-13 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 6e-13 | ||
| 4gfi_A | 329 | Crystal Structure Of Efi-502318, An Enolase Family | 7e-13 | ||
| 4e8g_A | 391 | Crystal Structure Of An Enolase (Mandelate Racemase | 8e-13 | ||
| 4a6g_A | 368 | N-Acyl Amino Acid Racemase From Amycalotopsis Sp. T | 1e-12 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 2e-12 | ||
| 2chr_A | 370 | A Re-Evaluation Of The Crystal Structure Of Chlorom | 3e-12 | ||
| 3bjs_A | 428 | Crystal Structure Of A Member Of Enolase Superfamil | 4e-12 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 1e-11 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 1e-11 | ||
| 3i6t_A | 381 | Crystal Structure Of Muconate Cycloisomerase From J | 2e-11 | ||
| 1wue_A | 386 | Crystal Structure Of Protein Gi:29375081, Unknown M | 3e-11 | ||
| 3i6e_A | 385 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 4e-11 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 6e-11 | ||
| 3no1_A | 398 | Crystal Structure Of Mandelate Racemase/muconate La | 7e-11 | ||
| 3msy_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-10 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 2e-10 | ||
| 2rdx_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-10 | ||
| 3t8q_A | 370 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-10 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 1e-09 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 2e-09 | ||
| 3ct2_A | 382 | Crystal Structure Of Muconate Cycloisomerase From P | 3e-09 | ||
| 4a35_A | 441 | Crystal Structure Of Human Mitochondrial Enolase Su | 3e-09 | ||
| 4h1z_A | 412 | Crystal Structure Of Putative Isomerase From Sinorh | 3e-09 | ||
| 2hne_A | 436 | Crystal Structure Of L-fuconate Dehydratase From Xa | 7e-09 | ||
| 2hxt_A | 441 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 8e-09 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 1e-08 | ||
| 2ppg_A | 399 | Crystal Structure Of Putative Isomerase From Sinorh | 1e-08 | ||
| 2oz8_A | 389 | Crystal Structure Of Putative Mandelate Racemase Fr | 3e-08 | ||
| 2ps2_A | 371 | Crystal Structure Of Putative Mandelate RacemaseMUC | 3e-08 | ||
| 1yey_A | 444 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 3e-08 | ||
| 2hxu_A | 441 | Crystal Structure Of K220a Mutant Of L-Fuconate Deh | 3e-08 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 1e-07 | ||
| 1mra_A | 359 | Mandelate Racemase Mutant D270n Co-Crystallized Wit | 1e-07 | ||
| 4dye_A | 398 | Crystal Structure Of An Enolase (Putative Sugar Iso | 1e-07 | ||
| 1dtn_A | 359 | Mandelate Racemase Mutant D270n Co-crystallized Wit | 1e-07 | ||
| 3uxk_A | 383 | P. Putida Mandelate Racemase Co-Crystallized With T | 1e-07 | ||
| 1mns_A | 357 | On The Role Of Lysine 166 In The Mechanism Of Mande | 2e-07 | ||
| 1mdr_A | 359 | The Role Of Lysine 166 In The Mechanism Of Mandelat | 2e-07 | ||
| 3n4e_A | 393 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-07 | ||
| 1mdl_A | 359 | Mandelate Racemase Mutant K166r Co-Crystallized Wit | 3e-07 | ||
| 2oqh_A | 385 | Crystal Structure Of An Isomerase From Streptomyces | 8e-07 | ||
| 2pce_A | 386 | Crystal Structure Of Putative Mandelate RacemaseMUC | 8e-07 | ||
| 2gdq_A | 382 | Crystal Structure Of Mandelate Racemase/muconate La | 2e-06 | ||
| 2qgy_A | 391 | Crystal Structure Of An Enolase From The Environmen | 3e-06 | ||
| 2oqy_A | 391 | The Crystal Structure Of Muconate Cycloisomerase Fr | 3e-06 | ||
| 3hpf_A | 391 | Crystal Structure Of The Mutant Y90f Of Divergent G | 3e-06 | ||
| 2pge_A | 377 | Crystal Structure Of Menc From Desulfotalea Psychro | 4e-06 | ||
| 3mwc_A | 400 | Crystal Structure Of Probable O-Succinylbenzoic Aci | 4e-06 | ||
| 3u4f_A | 388 | Crystal Structure Of A Mandelate Racemase (Muconate | 2e-05 | ||
| 4e4f_A | 426 | Crystal Structure Of Enolase Pc1_0802 (Target Efi-5 | 3e-05 | ||
| 3toy_A | 383 | Crystal Structure Of Enolase Brado_4202 (Target Efi | 3e-05 | ||
| 2ozt_A | 332 | Crystal Structure Of O-Succinylbenzoate Synthase Fr | 3e-05 | ||
| 3h7v_A | 330 | Crystal Structure Of O-Succinylbenzoate Synthase Fr | 3e-05 | ||
| 2nql_A | 388 | Crystal Structure Of A Member Of The Enolase Superf | 7e-05 | ||
| 4dn1_A | 408 | Crystal Structure Of An Enolase (Mandelate Racemase | 8e-05 | ||
| 4gir_A | 422 | Crystal Structure Of An Enolase Family Member From | 1e-04 | ||
| 3p3b_A | 392 | Crystal Structure Of Galacturonate Dehydratase From | 1e-04 | ||
| 3mzn_A | 450 | Crystal Structure Of Probable Glucarate Dehydratase | 3e-04 | ||
| 3v5c_A | 392 | Crystal Structure Of The Mutant E234a Of Galacturon | 3e-04 | ||
| 3n4f_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-04 | ||
| 3cyj_A | 372 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 7e-04 | ||
| 3tj4_A | 372 | Crystal Structure Of An Enolase From Agrobacterium | 7e-04 |
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
| >pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Herpetosiphon Aurantiacus Length = 365 | Back alignment and structure |
|
| >pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM CELLULOSUM Length = 389 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase Length = 324 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme From Silicibacter Pomeroyi Length = 378 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From Methylococcus Capsulatus Complexed With Mg And Dipeptide L-Arg-D-Lys Length = 356 | Back alignment and structure |
|
| >pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Klebsiella Pneumoniae Length = 381 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From Thermus Thermophilus Hb8 Length = 369 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid Racemase At 1.3 : Insights Into A Flexible Binding Pocket And Evolution Of Enzymatic Activity Length = 375 | Back alignment and structure |
|
| >pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase From Sinorhizobium Meliloti 1021 Length = 384 | Back alignment and structure |
|
| >pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 369 | Back alignment and structure |
|
| >pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i Length = 373 | Back alignment and structure |
|
| >pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms Resolution Length = 373 | Back alignment and structure |
|
| >pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v Length = 369 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant Length = 372 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed With N-Acetylmethionine Length = 368 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (target Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine (product) Length = 391 | Back alignment and structure |
|
| >pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME (Efi Target:502127) Length = 388 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens With Homology To Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With Ordered Loop) Length = 329 | Back alignment and structure |
|
| >pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (Target Nysgrc-012907) With Bound Mg Length = 391 | Back alignment and structure |
|
| >pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp. Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl Methionine Length = 368 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate Cycloisomerase Length = 370 | Back alignment and structure |
|
| >pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Polaromonas Sp. Js666 Length = 428 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Jannaschia Sp. Length = 381 | Back alignment and structure |
|
| >pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member Of Enolase Superfamily From Enterococcus Faecalis V583 Length = 386 | Back alignment and structure |
|
| >pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi. Length = 385 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From A Marine Actinobacterium In Complex With Magnesium Length = 398 | Back alignment and structure |
|
| >pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From A Marine Actinobacterium Length = 379 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Nubinhibens Ism Length = 379 | Back alignment and structure |
|
| >pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME Family Protein From Hoeflea Phototrophica Length = 370 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Pseudomonas Fluorescens Length = 382 | Back alignment and structure |
|
| >pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase Superfamily Member 1 (Enosf1) Length = 441 | Back alignment and structure |
|
| >pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti, Open Loop Conformation (Target Efi-502104) Length = 412 | Back alignment and structure |
|
| >pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 436 | Back alignment and structure |
|
| >pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And D-Erythronohydroxamate Length = 441 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti Length = 399 | Back alignment and structure |
|
| >pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Mesorhizobium Loti Length = 389 | Back alignment and structure |
|
| >pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Aspergillus Oryzae Length = 371 | Back alignment and structure |
|
| >pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 444 | Back alignment and structure |
|
| >pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And L-Fuconate Length = 441 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With (S)-Atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase, Target Efi- 502095) From Streptomyces Coelicolor, No Mg, Ordered Loop Length = 398 | Back alignment and structure |
|
| >pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With (s)-atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The Intermediate Analogue Benzohydroxamate Length = 383 | Back alignment and structure |
|
| >pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (R)-Alpha-Phenylglycidate Length = 357 | Back alignment and structure |
|
| >pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (r)-alpha-phenylglycidate Length = 359 | Back alignment and structure |
|
| >pdb|3N4E|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING From Paracoccus Denitrificans Pd1222 Length = 393 | Back alignment and structure |
|
| >pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)- Mandelate Length = 359 | Back alignment and structure |
|
| >pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces Coelicolor A3(2) Length = 385 | Back alignment and structure |
|
| >pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseovarius Nubinhibens Ism Length = 386 | Back alignment and structure |
|
| >pdb|2GDQ|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From Bacillus Subtilis At 1.8 A Resolution Length = 382 | Back alignment and structure |
|
| >pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental Genome Shotgun Sequencing Of The Sargasso Sea Length = 391 | Back alignment and structure |
|
| >pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From Oceanobacillus Iheyensis Length = 391 | Back alignment and structure |
|
| >pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent Galactarate Dehydratase From Oceanobacillus Iheyensis Complexed With Mg And Galactarate Length = 391 | Back alignment and structure |
|
| >pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila Lsv54 Length = 377 | Back alignment and structure |
|
| >pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid Synthet Kosmotoga Olearia Length = 400 | Back alignment and structure |
|
| >pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate Lactonizing Enzyme Family Protein) From Roseovarius Nubinhibens Length = 388 | Back alignment and structure |
|
| >pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240) From Pectobacterium Carotovorum Subsp. Carotovorum Pc1 Length = 426 | Back alignment and structure |
|
| >pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium And Acetate Bound Length = 383 | Back alignment and structure |
|
| >pdb|2OZT|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 Length = 332 | Back alignment and structure |
|
| >pdb|3H7V|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 Complexed With Mg In The Active Site Length = 330 | Back alignment and structure |
|
| >pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily From Agrobacterium Tumefaciens Length = 388 | Back alignment and structure |
|
| >pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) With Bound Mg And Formate Length = 408 | Back alignment and structure |
|
| >pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) With Homology To Mannonate Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound (Ordered Loops, Space Group P41212) Length = 422 | Back alignment and structure |
|
| >pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With D-Tartrate Length = 392 | Back alignment and structure |
|
| >pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From Chromohalobacter Salexigens Dsm 3043 Length = 450 | Back alignment and structure |
|
| >pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With Mg Length = 392 | Back alignment and structure |
|
| >pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10 Length = 392 | Back alignment and structure |
|
| >pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME- Like Protein From Rubrobacter Xylanophilus Length = 372 | Back alignment and structure |
|
| >pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium Tumefaciens (Efi Target Efi-502087) No Mg Length = 372 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 373 bits (959), Expect = e-128
Identities = 129/363 (35%), Positives = 189/363 (52%), Gaps = 7/363 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q +N+PL PF IA+ NV ++++L++G +G GEA P V+ E Q
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGT 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
L + + ++ A R +EMA++DA+ + MPL
Sbjct: 67 SAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAA--RCGLEMAMLDALTRHYHMPLHV 124
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV 226
FGGVS + TD+TI AA A +G ++K+K ++ D+ LRAI
Sbjct: 125 FFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQA 184
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P + I+D N GY + A+ + VLFEQP+ R+DW G+ V+ + G
Sbjct: 185 APTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA----QSG 240
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
+VAADES RS DV +I + A VINIKL K GV L++I + +A+GL LMIGGMVE
Sbjct: 241 FAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGMVE 300
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ LAM F+ +L+AG G F FIDLDTPL ++E P + G+ +G + + GHG L
Sbjct: 301 SILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLEGH 360
Query: 407 NIA 409
+
Sbjct: 361 HHH 363
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-124
Identities = 135/386 (34%), Positives = 201/386 (52%), Gaps = 18/386 (4%)
Query: 25 SPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS 84
S + F+++T T+ + PL++PL PF IA+ + N+ + +EL+
Sbjct: 8 SSGVDLGTENLYFQSMTAPTTI--RALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELT 65
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFAS 144
+G G+GEA P E Q A A +++ + + + L A
Sbjct: 66 DGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVREWRRIALALPALPGMTGSA- 124
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204
R A+E A++DA+ + +PLW FGG + ++ TD+TI S AA A +G TT
Sbjct: 125 -RCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTT 183
Query: 205 LKLKVG---------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 255
+K+K+G + ++ D+ + AIR V P + ILD N GY +A+ +L+ L
Sbjct: 184 IKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVH 243
Query: 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315
G+ P LFEQPV +DD EGL + V VAADES S D ++ + DV+NI
Sbjct: 244 GIVPALFEQPVAKDDEEGLRRL----TATRRVPVAADESVASATDAARLARNAAVDVLNI 299
Query: 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLL 375
KL K G++ AL+I + R +GL+LMIGGMVE+ LAM + +AG G F+F+DLDTPL L
Sbjct: 300 KLMKCGIVEALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFL 359
Query: 376 SEDPVLDGYEVSGAVYKFTNAR-GHG 400
+E+P G G T GHG
Sbjct: 360 AENPFDGGMTYHGGTIDLTLIEAGHG 385
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-123
Identities = 116/348 (33%), Positives = 177/348 (50%), Gaps = 7/348 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + PF I S + NV + I L +G G+GEA V E +
Sbjct: 4 IVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEAL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + E++ +F + L G +AAV+ A +DA+++ + +
Sbjct: 64 LAIENAVREMITGIDVRNYARIFEITDRL-FGFPSL--KAAVQFATLDALSQELGTQVCY 120
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 227
L GG + I TD T+ I + + A K ++GF +K+KVG+NLKEDIE + I V
Sbjct: 121 LLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVT 180
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
+ +I+DAN GY +EAVE +Y+ G+ ++EQPV R+D EGL V +
Sbjct: 181 RGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFV----RFHSPF 236
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
VAADES R+ DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+
Sbjct: 237 PVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGES 296
Query: 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395
L + + H + G G F+F DLD+ L+L E+ + G + +
Sbjct: 297 SLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKD 344
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-123
Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 7/355 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R L++PL PF IA ++ N+ + +EL++G +G+GEA LP E Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
A E + S A A +V + G + R A+E A++DA+ K MPLW
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASGGG-AGAARCAIETAILDALTKRAGMPLWA 125
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAV 226
FGG +TTDITI SP A E A + GF LK+KVG D + AI A
Sbjct: 126 FFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAA 185
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P +S ILD N G EA+ ++ +G L EQPV RDDW+G+ V+ + G
Sbjct: 186 APGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR----RAG 241
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
V VAADES S +DV ++ A V+NIKL K G+ AL+I V RA+GL LMIGGMVE
Sbjct: 242 VDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGGMVE 301
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR-GHG 400
+ LAM + +AGLG F F+DLDTPL L+E+P G+ G R GHG
Sbjct: 302 SVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-118
Identities = 91/357 (25%), Positives = 158/357 (44%), Gaps = 12/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + R + PL P+ IA +++++N+ + I ++G +G G A HVT E +
Sbjct: 3 IADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEAC 62
Query: 108 M-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ L L + +A LP A RAA++MAL D VA+ + +PL
Sbjct: 63 HAALDHDRLGWLMGRDIRTLPRLCRELAERLPAAPAA--RAALDMALHDLVAQCLGLPLV 120
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
+ G +++ T +TI I E A ++ GF LK+K+ + ++D E LR +
Sbjct: 121 EILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLHET 180
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ + +D N+ Y + + + E+G+ EQP + L +
Sbjct: 181 LAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE--FIEQPFPAGRTDWLRALPK----AI 234
Query: 286 GVSVAADESCRSLDDVKKIVKGNLA-DVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+AADES D + A + NIKL K G+ A I + +G++LM G
Sbjct: 235 RRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC 294
Query: 344 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
M E+R+++ A H + +++DLD L+ D G+ + + T G G
Sbjct: 295 MDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-116
Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 12/366 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + E V L PF I+ L NV +RI ++G +G+GE + E TA
Sbjct: 3 ITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTA 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + L + + + S ++ ++ G+ ++A +AL D A+ +PL+
Sbjct: 63 FIVGQYLAKGLIGTSCLDIVSNSLLMDAIIYGNSCI--KSAFNIALYDLAAQHAGLPLYA 120
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
GG I TD T+ I P + A A + +K GF +K+KVG + + D+E +R IR A
Sbjct: 121 FLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREA 180
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ +DAN+G+ + A+E L L + E+PV R+ + L +
Sbjct: 181 AGDSITLRIDANQGWSVETAIETLTLLEPYNIQ--HCEEPVSRNLYTALPKIRQ----AC 234
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ + ADESC + D +++++ D N+KL+K G+ AL II + + + + +GG
Sbjct: 235 RIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGF 294
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHGGFL 403
+E+RL A H++ + D DTPL+ DPV G + + G G
Sbjct: 295 LESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGY 354
Query: 404 HWDNIA 409
D ++
Sbjct: 355 QKDYLS 360
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-116
Identities = 126/357 (35%), Positives = 181/357 (50%), Gaps = 10/357 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
L ++ + LL G+ A +AAVEMAL D A+ +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR- 224
++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR
Sbjct: 121 QMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRK 180
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V D
Sbjct: 181 RVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKV----TDA 236
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+ ADES + ++++ AD+INIKL K G+ GA +I + A G+ M+G
Sbjct: 237 TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGS 296
Query: 344 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 297 MIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 340 bits (875), Expect = e-115
Identities = 82/357 (22%), Positives = 163/357 (45%), Gaps = 11/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + + +PL F A + ++++A+ + L NG G+G AP +T + Q
Sbjct: 5 IIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGM 64
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
E V+ S + + + A + A+++A D +AK + +
Sbjct: 65 QYIIREIFAPVILGSDLSDYKQTLELAFKKVMFNSAA--KMAIDLAYHDLLAKEQDISVA 122
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
+L G +N+I TD++I + AE + + FT +K+K G + DI++L+A+
Sbjct: 123 KLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNE 182
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ F DAN+G+ + + +E++ + + + EQPV D + + ++
Sbjct: 183 FSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEITK----FS 238
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ V ADES D ++++ ++INIKLAK G+L A +I ++ ++G++ M+G M
Sbjct: 239 NIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCM 298
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHG 400
+E+ + + DLD +++D D + + N +G G
Sbjct: 299 MESPAGILATASFALAED-ITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFG 354
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-115
Identities = 112/357 (31%), Positives = 175/357 (49%), Gaps = 12/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+++ R + L FTIA ++ ++ + IE G VG+GE +T E
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGT 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + + + + V+ + A +AA+++A D + + +PL++
Sbjct: 63 LETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAA--KAAIDIACYDLMGQKAQLPLYQ 120
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AV 226
L GG N + TDIT+ I P A+ A + K GF TLK+KVG ++ DI ++AIR AV
Sbjct: 121 LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV 180
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
D LDAN+ + P++AV+ ++ L + + L EQPV R D EGL +V +
Sbjct: 181 GFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVKRRDLEGLKYV----TSQVN 234
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMV 345
++ ADESC D ++VK DVINIKL K G+ AL+I ++ +G+ MIG M
Sbjct: 235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMA 294
Query: 346 -ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG-AVYKFTNARGHG 400
ET + + A HL+A DLD L PV G + + + A G G
Sbjct: 295 EETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLG 351
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 297 bits (764), Expect = 5e-99
Identities = 101/354 (28%), Positives = 164/354 (46%), Gaps = 24/354 (6%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + L FT+AT +V + IE G G+GEA +P E ++ ++
Sbjct: 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEIE-YEGVTGYGEA-SMPPYLGETVES-VM 58
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ + + S L + V L P A +AAV++AL D V K + P ++++
Sbjct: 59 NFLKKVNLEQFSDPFQLEDILSYVDSLSPKDTAA--KAAVDIALHDLVGKLLGAPWYKIW 116
Query: 170 GG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP 228
G T +T TI I +P K F LK+K+G++ D E++ IR+
Sbjct: 117 GLNKEKTPSTTFTIGIDTPDVVRAKT-KECAGLFNILKVKLGRD--NDKEMIETIRS-VT 172
Query: 229 DSSFILDANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
D +DAN+G+K ++ A++++ L E G+ + EQP+ ++ + + V + +
Sbjct: 173 DLPIAVDANQGWKDRQYALDMIHWLKEKGIV--MIEQPMPKEQLDDIAWV----TQQSPL 226
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 346
V ADES + L DV + INIKL K G+ A +++ + A G+ +M+G M E
Sbjct: 227 PVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTE 284
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
T A+ A S F DLD LL+S D G EV + G G
Sbjct: 285 TSCAISAASQFSPA---VDFADLDGNLLISNDRF-KGVEVVNGKITLNDLPGIG 334
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 6e-99
Identities = 67/378 (17%), Positives = 130/378 (34%), Gaps = 35/378 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R ++ P + L +R++ +G G GE ++P ++ + ++
Sbjct: 6 ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEEQIGR 64
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGH---------------------QFASVRAA 148
+ L+ + L G +F ++R A
Sbjct: 65 ELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFA 124
Query: 149 VEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208
+EMAL+D ++ F I + I + A E +G+ LKLK
Sbjct: 125 LEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLK 184
Query: 209 VGK-NLKEDIEVLRAIRAVHP--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
+G + ++ +L IR +DAN + P A + L++L + + EQP
Sbjct: 185 IGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHLH--SIEQP 242
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV--KGNLADVINIKLAKV-GV 322
+ + W + + +++A DE L ++ I +K + + G
Sbjct: 243 IRQHQWSEMAAL----CANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGF 298
Query: 323 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLD 382
A + IE+ R G+ I +E+ L + +A L T L + +
Sbjct: 299 HYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-S 357
Query: 383 GYEVSGAVYKFTNARGHG 400
V G + + H
Sbjct: 358 NLAVDGGLLGVSEGHHHH 375
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 1e-98
Identities = 93/334 (27%), Positives = 146/334 (43%), Gaps = 28/334 (8%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ + PL PF IA + V + +E G G GE P E + M
Sbjct: 5 RTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVM 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+++ P + G + +LP A R A++ AL D A+ L L
Sbjct: 63 A------QIMSVVPQLEKGLTREELQKILP-AGAA--RNALDCALWDLAARRQQQSLADL 113
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 227
G + T+ T T+ I +P + A AS + G LK+K+ + E + AIR
Sbjct: 114 IGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAV 171
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
PD++ I+DANE ++ + + L ++GV + EQP+ D L + H +
Sbjct: 172 PDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PL 223
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 346
+ ADESC + ++K + +++NIKL K G+ AL + RA G +LM+G M+
Sbjct: 224 PICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLC 281
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
T A+ A L F DLD P L+ D
Sbjct: 282 TSRAISAALPLVPQ---VSFADLDGPTWLAVDVE 312
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 3e-97
Identities = 75/359 (20%), Positives = 146/359 (40%), Gaps = 15/359 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ P ++P P A+ + E+V +R+ +G VG EAP P E Q
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ + L +A G+ A +AA++MA+ DA+ +S+ + +
Sbjct: 63 VAVIEQYFAPALIGLTLTEREVAHTRMART-VGNPTA--KAAIDMAMWDALGQSLRLSVS 119
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLKVGKN-LKEDIEVLRAIR 224
+ GG ++ + + P + A + R+ G T K+KVG+ ++ D V+RA+R
Sbjct: 120 EMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALR 179
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+D N G+ E++ + ++ ++ + E+ DD +
Sbjct: 180 ERFGDAIELYVDGNRGWSAAESLRAMREMADLDLL--FAEELCPADDVLSRRRL----VG 233
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343
+ + ADES + DV + V G A I+IK A+ G G+ + + GL++++G
Sbjct: 234 QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGN 293
Query: 344 MVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
++ ++ +L L +S+D + ++S G G
Sbjct: 294 QIDGQIGTACTVSFGTAFERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLG 352
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 293 bits (751), Expect = 2e-96
Identities = 92/359 (25%), Positives = 163/359 (45%), Gaps = 18/359 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE A LP T E
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 81
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+A++ E +L + + + + + G++ A +AAVE+A+ DA AK
Sbjct: 82 SAILIIKEQLLPLLAQRKIRKPEEIQELFS-WIQGNEMA--KAAVELAVWDAFAKMEKRS 138
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L ++ G +I ++I + E +L ++Y QG+ +KLK+ N +DI+ + A+
Sbjct: 139 LAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAV 196
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P S + DAN Y ++ + L++L + + + EQP D+ + +
Sbjct: 197 RKSFPKLSLMADANSAYNREDFLL-LKELDQYDL--EMIEQPFGTKDFVDHAWL----QK 249
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE+ RS+ DV++ IN+KLA+V G+ AL+I E + + + G
Sbjct: 250 QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCG 309
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
GM+E + L+A D+ + +ED V +E++ K G G
Sbjct: 310 GMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIG 368
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 4e-95
Identities = 84/336 (25%), Positives = 159/336 (47%), Gaps = 13/336 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++
Sbjct: 5 AIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFH 64
Query: 110 KASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
L M + + ++ + G A +AA+++A D + K ++ P+++L
Sbjct: 65 TLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTA--KAAIDIACFDIMGKKLNQPVYQL 122
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AV 226
GG + I P AE A+ ++G+ + K+KVG N+KED++ + A+R V
Sbjct: 123 IGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERV 182
Query: 227 HPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
D + +D N+G+K + L L + + EQPV DD + + H+ + K
Sbjct: 183 GNDIAIRVDVNQGWKNSANTLTALRSLGHLNID--WIEQPVIADDIDAMAHI----RSKT 236
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ + DE +S ++++I+K AD +NIKL K G+ A+++ +G+ +G M
Sbjct: 237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSM 296
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
VE+ +A H++ ++L PL ++D
Sbjct: 297 VESSVASSAGFHVAFSKKIITSVELTGPLKFTKDIG 332
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 1e-94
Identities = 75/353 (21%), Positives = 126/353 (35%), Gaps = 32/353 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R + R PL P T A + +R+E G VG+GE LP +E +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADI- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ ++ P + + LP QF A ++ + P+ L
Sbjct: 63 ------ALCQQLPGHLTPEIMATIPEALPAAQFG--FATAWQSVGRLPYRVRPWPICALL 114
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR-AVH 227
G S A E + ++G TT K KVG + +E+ +L+A+ A+
Sbjct: 115 G---------------SGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLAALP 159
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFG 286
P + LDAN + A L G + + EQP+ D W+ L ++
Sbjct: 160 PGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLA----QTVT 215
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
++A DES S +V++ V IK A G +L ++ L+ +E
Sbjct: 216 TAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALE 275
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
+A HL + P+L +++ + GH
Sbjct: 276 GAIARTAIFHLLETWQPCHALGFGVDRWR-SAPLLTTLTAYERLWERLDQEGH 327
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 4e-94
Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 19/368 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE R L +PL F + + + +R+ G G GE LP E
Sbjct: 3 IEAAELRILELPLKFRFETSFGVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYREETVA 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A E + ++ +A G+ A +A +EMA D AK++ P
Sbjct: 62 GARYLLEEVFLPRVLGRDLPNPEALREALAPF-RGNPMA--KAVLEMAFFDLWAKALGRP 118
Query: 165 LWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
LW++ GGV + +++ I S + + ++ ++G+ +KLK+ D EVL+A+
Sbjct: 119 LWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIKPG--WDYEVLKAV 176
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P+++ DAN Y + L++L E+ + EQP+ DD + +
Sbjct: 177 REAFPEATLTADANSAYSLANLAQ-LKRLDELRL--DYIEQPLAYDDLLDHAKL----QR 229
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES + +K ++ V N+K A++ G +L + + ++G+ L +G
Sbjct: 230 ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMG 289
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM+E + HL+ G K D+ + ED V + E + G G
Sbjct: 290 GMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGV 349
Query: 402 FLHWDNIA 409
L +
Sbjct: 350 HLKLPFVE 357
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 5e-91
Identities = 79/368 (21%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE P E
Sbjct: 22 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 81
Query: 106 TAM-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T + +L V + + GH +AA+E A+ D AK
Sbjct: 82 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEV-KGHWMG--KAALETAIWDLYAKRQQKS 138
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L FG I I++ I + ++G+ +KLK+ D+E + I
Sbjct: 139 LTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVALI 196
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P+ ++DAN Y + + L++L + + EQP DD+ + +
Sbjct: 197 RQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQLA--MIEQPFAADDFLDHAQL----QR 249
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE+ RSL D + + IN+K+ +V G+ AL+I + + L + +G
Sbjct: 250 ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLG 309
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM E+ + ++ D+ ED + + + + G G
Sbjct: 310 GMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGV 369
Query: 402 FLHWDNIA 409
L N+
Sbjct: 370 TLSQTNLL 377
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 1e-90
Identities = 86/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+Q L++PL P A + + + + +++ ++G GW E L P T E
Sbjct: 3 LQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTD 62
Query: 106 TAMVKASE-------ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
TA V + G++ + AA+EMA+ D A
Sbjct: 63 TAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMS--VAAIEMAVWDWYA 120
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDI 217
PL L GG + + T+ + + + +QGF +KLK+ D
Sbjct: 121 ARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAPG--RDR 178
Query: 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
++A+R +PD + DAN Y+P++A VL +L + EQP+ DDW L +
Sbjct: 179 AAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDLQ--FIEQPLPEDDWFDLAKL 235
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 336
+ V DES RS+ ++K + A V+N+K ++ G L ++V +G
Sbjct: 236 ----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAG 291
Query: 337 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYE-VSGAVYKFT 394
+ +GGM ET + +A DL + +D + + V V +
Sbjct: 292 MAAWVGGMYETGVGRVHGLIAAALPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVP 351
Query: 395 NARGHGGFLHWDNIA 409
G ++ D +
Sbjct: 352 QCAGVADWVDRDAVR 366
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 5e-89
Identities = 78/357 (21%), Positives = 135/357 (37%), Gaps = 14/357 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ L +P+++ R+ E V +R+ G G+GEA T + +
Sbjct: 12 AMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYA 71
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
++ ++ A + A +AA++ AL+D + ++P+W L
Sbjct: 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEA--KAALDSALLDLAGRISNLPVWAL 129
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV 226
GG +TI +I L + R G +KLK G ++ DI L I
Sbjct: 130 LGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARD 189
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P+ +D N+G + EAV + + + EQPV +E + + +
Sbjct: 190 FPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPD--FIEQPVRAHHFELMARL----RGLTD 243
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMV 345
V + ADES +D+ + + D ++IK+ K G+ A + + A GL G M
Sbjct: 244 VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMF 303
Query: 346 ETRLAMGFAGHLSAGLGCFKFI--DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
E LA H+ A L+ED + + V + G G
Sbjct: 304 EAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLG 360
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 2e-88
Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 16/361 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AEDQQT 106
V++ E+ ++VP I P ++ + + V +R+ S+G G GEA + ++ +
Sbjct: 7 VEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPE 66
Query: 107 AMVKASEAC--EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A+ A +LK PA L ++ + G + G+ FA ++A+E AL+DA K++ +P
Sbjct: 67 AISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFA--KSAIETALLDAQGKALGLP 124
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLR 221
+ L GG + + T+ A+ AE + KLK+G + L D+ R
Sbjct: 125 VSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGARELATDLRHTR 184
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
AI A+ +S +D N+ + + +L MGV L EQPV D L +
Sbjct: 185 AIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPVSAHDNAALVRL--- 239
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
+ ++ ADE+ + D ++ + +K+AK G L + V +A+G+ L
Sbjct: 240 -SQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGL 298
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
G M+E + + H + L ++ PLLL +D V + G
Sbjct: 299 YGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGL 358
Query: 400 G 400
G
Sbjct: 359 G 359
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 3e-87
Identities = 85/372 (22%), Positives = 158/372 (42%), Gaps = 17/372 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ E +++P I P +A + V IR+ ++G G GE+ + + ++
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+K +L A + + + + G+ FA ++ +E AL+DA K + +P
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGLP 125
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 221
+ L GG V + + T+ A+ AE + KLK+G + D+ +
Sbjct: 126 VSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHVI 185
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
AI+ A+ +S +D N+ + A+ L G+ L EQP+ R++ G+ +
Sbjct: 186 AIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGID--LIEQPISRNNRAGMVRL--- 240
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339
+ ADES ++D + + A V +K+AK G L + A+G+ L
Sbjct: 241 -NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGL 299
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 398
G M+E + + H L + +L PLLL+ED + + + A G
Sbjct: 300 YGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPG 359
Query: 399 HGGFLHWDNIAW 410
G L + +A+
Sbjct: 360 LGLSLDEERLAF 371
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 3e-85
Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 18/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT--AEDQQTA 107
++VP P ++ + + + V ++++ + G VG GE + T +E +T
Sbjct: 5 AISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAETI 63
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
V +L A L ++ + G+ A +AA+++AL D A+++++ +
Sbjct: 64 KVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSA--KAAIDIALHDLKARALNLSIA 121
Query: 167 RLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI 223
L GG + +I T+ A + K+K+G + +D+E +R+I
Sbjct: 122 DLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSI 181
Query: 224 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
AV +S +D N+G+ Q A + +L E GV L EQPV R ++ L +
Sbjct: 182 VKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRL----T 235
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
++ GV++ ADES SL ++ + + D ++KL + G+ L++ V A+G++
Sbjct: 236 EQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYG 295
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
G M+++ + A H+ A L + +L P +L + E+ G G
Sbjct: 296 GTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLG 355
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 1e-84
Identities = 84/359 (23%), Positives = 149/359 (41%), Gaps = 19/359 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ E R + +PL+APF + E + +R G GWGE + P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYND 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A L + + V ++A GH+ A + A+EMA++DA ++
Sbjct: 62 GAEHVLRHYLIPALLAAEDITAAKVTPLLA-KFKGHRMA--KGALEMAVLDAELRAHERS 118
Query: 165 LWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
G V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +RA+
Sbjct: 119 FAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAV 176
Query: 224 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
R D +DAN Y +A + L +L G+ L EQP+ +D G +
Sbjct: 177 RERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGLL--LIEQPLEEEDVLGHAEL----A 229
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
+ + DES S +K ++NIK +V G L A + +V A G+ +
Sbjct: 230 RRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
GGM+ET L L++ D + + + + +SG G G
Sbjct: 290 GGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLG 348
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 5e-84
Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 17/362 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q+ E+R L+VPLI P AT+ + + + + L NG +G+GE P P E +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 106 TAMVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T VL L + + ++ ++A +AAV++A+ DA A+S+++P
Sbjct: 68 TMKALVDGYLAPVLIGRAVSELAGIMADLERVVARARYA--KAAVDVAMHDAWARSLNVP 125
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 221
+ L GG V + + + ++ AE+ + + G + KLK+G + ED +
Sbjct: 126 VRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVA 185
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
+ V S +D N + + A+ L L E GV LFEQP DD E L ++
Sbjct: 186 ELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLREIT-- 241
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
+ VSV ADES + + +VK ADVI +K K G+L + +I + A GL
Sbjct: 242 --RRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLAC 299
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 398
+E + + +A + +L P LL + ++ +E G
Sbjct: 300 HGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPG 359
Query: 399 HG 400
G
Sbjct: 360 LG 361
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 4e-83
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 25/356 (7%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQT-- 106
+ E P++ P+ + + L +++ V +++ G VG +A E Q +
Sbjct: 7 KVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSIT 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+M+ A +VL + + G + L + A +A V+ AL D V K +P++
Sbjct: 67 SMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA--KATVDFALHDLVGKRFGVPVY 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
+L GG I + + P AE A ++GF +KLK G LK DI ++ +R
Sbjct: 125 QLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRR 184
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
AV D +D N + +A+ + L + ++ EQP+ D +G+ + + K
Sbjct: 185 AVGDDVDLFIDINGAWTYDQALTTIRALEKYNLS--KIEQPLPAWDLDGMARL----RGK 238
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+ ADES + L D+ I+ AD + IK K G+L A + + R + L ++ G
Sbjct: 239 VATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGC 298
Query: 344 MVETRLAMGFAGHLSAGL-----------GCFKFIDLDTPLLLSEDPVLDGYEVSG 388
MV + L A HL A G D + D L+ G
Sbjct: 299 MVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEG 354
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 1e-81
Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 20/361 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQT- 106
E ++VP P ++ + + Q V +R+ S G VG GE + P +AE +T
Sbjct: 5 AIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETI 63
Query: 107 -AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+V+ A +L + +A + G+ A +AAVEMAL+D A+++ + +
Sbjct: 64 KIIVERYLAPHLLGTDA-FNVSGALQTMARAVTGNASA--KAAVEMALLDLKARALGVSI 120
Query: 166 WRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRA 222
L GG + + I T+ ++ K+K+G ++ ++D+ + A
Sbjct: 121 AELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEA 180
Query: 223 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
+ ++ + +D N+ + Q A + +L +GV L EQPV R++ + L +
Sbjct: 181 LSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVGRENTQALRRL---- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D V++ ADES +L + + DV ++KL + GV +I V ASG+
Sbjct: 235 SDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASY 294
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
G M+++ + A L + + F +L P +L++ + E+ + GH
Sbjct: 295 GGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGH 354
Query: 400 G 400
G
Sbjct: 355 G 355
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 4e-81
Identities = 69/375 (18%), Positives = 140/375 (37%), Gaps = 34/375 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + +P+ PF I++ ++ + I G+GE+ P E +
Sbjct: 9 IDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYLGETLE 67
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T V ++ +++ ++ + G+ FA R VE A D +AK +
Sbjct: 68 TTKVILKNHLLPMILGKEPLSIEEFNHLIKNGIRGNHFA--RCGVENAYWDLIAKKNKIS 125
Query: 165 LWRLFGG-------------VSNTITTDITIPIVSPA---EAAELASKYRKQGFTTLKLK 208
L + +N I + + I + ++G+ +K+K
Sbjct: 126 LKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIK 185
Query: 209 VGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
+ D+E L+ R AV DAN ++ + E + + + EQP+H
Sbjct: 186 IKPG--WDVEPLQETRRAVGDHFPLWTDANSSFELDQW-ETFKAMDAAKC--LFHEQPLH 240
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+ L + ++ + DES S + + K ++++ NIK+ +V G+L A+
Sbjct: 241 YEALLDLKEL----GERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAI 296
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYE 385
+I ++ +G+ L G M E+ L F L++ G D+ + L
Sbjct: 297 KIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGKGNDLVENT 356
Query: 386 VSGAVYKFTNARGHG 400
++ + G
Sbjct: 357 MTDGKIYVPDEPGAS 371
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 2e-80
Identities = 86/369 (23%), Positives = 145/369 (39%), Gaps = 19/369 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE +PL F + + V + I G G E P E
Sbjct: 10 IEAAEIVVARLPLKFRFETSFGVQTH-KVVPLLILHGEGVQGVAEGTMEARPMYREETIA 68
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A+ + +V + G++ A RA VEMA D A+++ +P
Sbjct: 69 GALDLLRGTFLPAILGQTFANPEAVSDALGSY-RGNRMA--RAMVEMAAWDLWARTLGVP 125
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L L GG + +++ I + +A +L ++ +QG+ +KLK+ D++ +RA
Sbjct: 126 LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRAT 183
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R PD +DAN Y +A L +L E +T EQP+ DD +
Sbjct: 184 REAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLT--YIEQPLAWDDLVDHAEL----AR 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES S D +K + VIN+K+A+V G + + +V ++ G + G
Sbjct: 237 RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCG 296
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM+E+ + HLS D D + + E + G G
Sbjct: 297 GMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGV 356
Query: 402 FLHWDNIAW 410
L + +A
Sbjct: 357 TLDREFLAT 365
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 6e-79
Identities = 71/341 (20%), Positives = 142/341 (41%), Gaps = 18/341 (5%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R +++PL P+ ++ + + ++ +++E G GWGE H
Sbjct: 7 RITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ E + L V + LPGH +A ++ ++MA D ++ +P+
Sbjct: 67 IRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIA 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
L GG ++ S E + +YR++G+ +K+G +++ DI +R +
Sbjct: 125 DLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVED 184
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
P + D N G+ Q+A+ V+ ++ V+FEQP + + + +
Sbjct: 185 IREPGEIVLYDVNRGWTRQQALRVMRATEDLH---VMFEQPGE--TLDDIAAI----RPL 235
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
V+ DE +L D ++ + LA+V IKL +V G+ A + ++ G+++ +
Sbjct: 236 HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMA 295
Query: 344 MVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDG 383
+ LA A HL+A + +L+ D
Sbjct: 296 TGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 8e-79
Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 15/348 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQT 106
V+R + P+ + V+ V + + ++G VGWGEA T +
Sbjct: 8 VERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAA 67
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
++ +P + + + +L GH A +AAVEMAL+D + K+ + +
Sbjct: 68 FSALDIYLRPLILGAPIKRVRELMARMDKMLVGHGEA--KAAVEMALLDILGKATGLSVA 125
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
L GG V + I +I E G T K+K G E++ +L +R
Sbjct: 126 DLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMR 185
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
LD N+ P A+++L + T EQPV R + + +
Sbjct: 186 GEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPT--FIEQPVPRRHLDAMAGFA----A 239
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ ADESC D+ ++V+ AD I++K+ K G++ A ++ + +GL G
Sbjct: 240 ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGG 299
Query: 343 GMVETRLAMGFAGHLSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSG 388
+ E +A+ L A + P +L+ED + + S
Sbjct: 300 TLWEGGIALAAGTQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSA 347
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-78
Identities = 70/360 (19%), Positives = 157/360 (43%), Gaps = 21/360 (5%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++P++ P+ IA+ + + ++I +G +GWGE + AE
Sbjct: 7 EIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGA 66
Query: 109 VKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ A E L + A+ L + + LL GH +A ++A+++A+ D K + +P+
Sbjct: 67 LAALEVLASGLAGAEALPL-PLHTRMDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHE 123
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR- 224
L GG +++++++ ++ ++ P EAA A + +++G++ L++K+G ++ DIE +R +
Sbjct: 124 LLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWE 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ D N G+ ++A+ + ++ + EQP + +E L + +
Sbjct: 184 AVRGTGIALAADGNRGWTTRDALRFSRECPDIP---FVMEQPCN--SFEDLEAI----RP 234
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
++ DE SL+ V +L D +K++++ G+ + A L
Sbjct: 235 LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCD 294
Query: 343 GMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ H+++ + + L P + +G + G + G G
Sbjct: 295 DAWGGDIVSAACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLG 354
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 4e-78
Identities = 71/360 (19%), Positives = 142/360 (39%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-TA 107
++P+ P+TIA+S + ++ ++I +G GWGE + A A
Sbjct: 27 EIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGA 86
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+E L + + + + GLL GH +A +AA+++A D + K + +
Sbjct: 87 RAALAEMAPGLIGANPLQPLVLRRRMDGLLCGHNYA--KAAIDIAAYDLMGKHYGVRVAD 144
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRA 225
L GG + + + I P E A +A++ +GF L++K+G ++ DIE +R +
Sbjct: 145 LLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWE 204
Query: 226 --VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ +D N ++A+ + + E+ + EQP + E + + +
Sbjct: 205 RIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP---FVLEQPC--NTLEEIAAI----RG 255
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES L V + L D +KL ++ G+ ++ A L
Sbjct: 256 RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCD 315
Query: 343 GMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ H+ A + + + + P + +G ++G G G
Sbjct: 316 DAWGGDIIAAACTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLG 375
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-76
Identities = 78/342 (22%), Positives = 134/342 (39%), Gaps = 20/342 (5%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-T 106
R L++PL P+ ++ + D++++ +RI+ G GWGE H
Sbjct: 7 RLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPG 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ L +L V V+ LPGH + ++ ++MA D + + +PLW
Sbjct: 67 LRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPGHSYV--KSPIDMACWDILGQVAGLPLW 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L GG + + + +I +P + L ++ QG+ T K+G + +DI + AI
Sbjct: 125 QLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAIS 184
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ D N + P AVEVL + EQP D HV
Sbjct: 185 AGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPCQTLD--QCAHV----AR 234
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE D + + IK +V G+ A +I + + G + I
Sbjct: 235 RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIE 294
Query: 343 GMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
+ T LA A HL+A + L++DP+
Sbjct: 295 DVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQ 336
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 9e-76
Identities = 62/344 (18%), Positives = 114/344 (33%), Gaps = 34/344 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + P + L + + I + G +GE E
Sbjct: 4 LTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIA 63
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+ + E + + +V L A RA + MAL +P
Sbjct: 64 SVKHVIEQWFEDNRNKSFETYEAALKLVDS-LENTPAA--RATIVMALYQMFHV---LPS 117
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 225
+ + G T +S + + T +KLK + + +R +R
Sbjct: 118 FSVAYG--------ATASGLSNKQLES----LKATKPTRIKLKWT---PQIMHQIRVLRE 162
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ ++DANE Q+ + L+ L V E+P D L V+
Sbjct: 163 LDFHFQLVIDANESLDRQDFTQ-LQLLAREQVL--YIEEPF--KDISMLDEVAD----GT 213
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344
+A DE SL D+ +++ V+ +K ++G + I+ +++ G ++IGGM
Sbjct: 214 IPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGM 273
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 388
E L+ F L A G + +D V +
Sbjct: 274 YEYGLSRYFTAML-ARKGDYPGDVTPAGYYFEQDVVAHSGILKE 316
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 2e-73
Identities = 65/351 (18%), Positives = 133/351 (37%), Gaps = 22/351 (6%)
Query: 50 RAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R + ++P+ + + + IE G GWGE+
Sbjct: 7 RIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
A E + ++ + L GH+ A RAA+++A D A++ +PL
Sbjct: 67 TRAALELLAPAILGMDPRQHDRIWDRMRDTLKGHRDA--RAALDIACWDIAAQAAGLPLC 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL-----KEDIEVL 220
+ GG V+ + +I +P +++R QGF +K+G + D E +
Sbjct: 125 DMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDAERI 184
Query: 221 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
A P ++ DAN G + A+ +L L ++ E P W +
Sbjct: 185 TACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGL--DIVLEAPC--ASWAETKSL-- 238
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 338
+ + + + DE ++ D+ ++ +L D + +K++K G+ L + A+G+
Sbjct: 239 --RARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMV 296
Query: 339 LMIGGMVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDGYEVSG 388
+ + V ++++ HL+ LDT + + + +
Sbjct: 297 MSVQDTVGSQISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRD 347
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-72
Identities = 62/342 (18%), Positives = 128/342 (37%), Gaps = 17/342 (4%)
Query: 54 RPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+++P + A + +RI G GWGE+ +
Sbjct: 12 FQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAG 71
Query: 112 -SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ L + + + L GH+ A + A+++A D KSV +P+ L G
Sbjct: 72 IATMAPSLIGLDPRRVDRINDAMDDALLGHEDA--KTAIDVACWDIFGKSVGLPVCELLG 129
Query: 171 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHP 228
G + + +I + P + +KYR +G+ +K+ D + + A P
Sbjct: 130 GRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQP 189
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
D FI+DAN + A+ +L L E P W + + K +
Sbjct: 190 DEFFIVDANGKLSVETALRLLRLLPHGL--DFALEAPCA--TWRECISL----RRKTDIP 241
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ DE + + KI+ + A+ I++K++K G+ ++ A+G ++ + +
Sbjct: 242 IIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGS 301
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 388
+A HL+ + L+ +++ +++
Sbjct: 302 DIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQD 343
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 4e-72
Identities = 61/342 (17%), Positives = 126/342 (36%), Gaps = 18/342 (5%)
Query: 54 RPLNVPLIAPF--TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
++P + A + + + I+ G G GE +
Sbjct: 11 YKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAF 70
Query: 112 SEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ L + + ++ L+ GH +A +A + A D + ++ P+W L G
Sbjct: 71 ARLAAPQLLGQDPRQVARMERLMDHLVQGHGYA--KAPFDAAFWDILGQATGQPVWMLLG 128
Query: 171 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHP 228
G + + P S AE +++R G+ ++KVG + + DI+ +RA + P
Sbjct: 129 GKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEP 188
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ DAN+G++ A+ + ++ + EQP +E V +
Sbjct: 189 GEKAMADANQGWRVDNAIRLARATRDLD---YILEQPCR--SYEECQQV----RRVADQP 239
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ DE L ++IV A++ +K++ + G+ A + + + + ++
Sbjct: 240 MKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGG 299
Query: 348 RLAMGFAGHLSAGLGCFKFID-LDTPLLLSEDPVLDGYEVSG 388
+A H +A I+ D + L G V
Sbjct: 300 EIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQ 341
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 1e-69
Identities = 84/341 (24%), Positives = 138/341 (40%), Gaps = 24/341 (7%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
RPL +PL P+ + + I IE +G VG GE V P T A++
Sbjct: 12 RPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGT---AAILY--R 66
Query: 114 ACEVLK-ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+ L SP + G A ++ + ++MA+ D K +P
Sbjct: 67 LAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQI--FSGIDMAMWDLQGKLAGLP 124
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
+ +L GG + + + E A A+ QG LKVG+ K D+E+ A+
Sbjct: 125 VHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAV 184
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R D+ LDANEG+ +A+ + KL + EQP + HV +
Sbjct: 185 RGEIGDARLRLDANEGWSVHDAINMCRKLEKYD--IEFIEQPTVSWSIPAMAHVR----E 238
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
K G+ + AD++ +L DV +I + AD+I I ++ G+ ++ V A+GL + I
Sbjct: 239 KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIH 298
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG 383
T + H+ + + L+ ED V
Sbjct: 299 SSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSP 339
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 6e-69
Identities = 64/335 (19%), Positives = 108/335 (32%), Gaps = 39/335 (11%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+AG Q SV V AL + +R
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRA 108
Query: 169 FGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH 227
+ P + + G K++VG D V+ +
Sbjct: 109 -----------APLCNGDPDDLILKLA--DMPGEKVAKVRVGLYEAVRDGMVVNLLLEAI 155
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFG 286
PD LDAN + P + + + + + E+P D + G
Sbjct: 156 PDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRA------FARETG 209
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345
+++A DES R D +G + IK G + E ++ A GL +I +
Sbjct: 210 IAIAWDESLREPDFAFVAEEG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSI 267
Query: 346 ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
E+ L + ++A L LDT L+ V
Sbjct: 268 ESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV 302
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 2e-66
Identities = 66/354 (18%), Positives = 118/354 (33%), Gaps = 31/354 (8%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + +P F ++V ++I G G GE H+ +
Sbjct: 5 DLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDL 56
Query: 110 KASEACEVLKESPA------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
K +L ++P L F F R ++ AL D AK + +
Sbjct: 57 KQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEKGSFI--RNGIDNALHDLCAKYLDI 114
Query: 164 PLWRLFGG-VSNTITTDITI----PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
+ GG V I I ++ + +QGF +L VGKNL D E
Sbjct: 115 SVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEE 174
Query: 219 VLRAIR-AVHPDSSF-ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
L ++ D + ++A +++L + + + E P R+D++GL
Sbjct: 175 FLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQ 234
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
+ E S ++++K + D+ NI + G+ A + +
Sbjct: 235 LRL------KTDYPISEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVA 288
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSG 388
++++G E + HL L D P L D V +
Sbjct: 289 SKDVVLGTTQELSVGTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKD 342
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-61
Identities = 54/367 (14%), Positives = 115/367 (31%), Gaps = 51/367 (13%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + + AT+ + E V +++E ++G G+ + P + + +
Sbjct: 3 KISYSPYTLKPVQSLNAATAATAR-EGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL- 60
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ L G + ++ +A DA+ + ++
Sbjct: 61 ------------------------SDLRMGRMTTQIEQSIWLARRDALLRKEKKHVFDG- 95
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
I + + + L + +G+ T+K+K+G++L+++ ++L I A
Sbjct: 96 ---GEKIKNNYLLSHFQDLKPGFLD-GLKNEGYNTVKVKMGRDLQKEADMLTHIAA--SG 149
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVS 288
LD N Q + + L + + E P D + +
Sbjct: 150 MRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDF-HAW------GEARKLAK 202
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348
+A D + K + DVI IK AK + + + L L + ++
Sbjct: 203 IALDNQYDKVPWGK--IASAPFDVIVIKPAK---TDVDKAVAQCQKWNLKLAVTSYMDHP 257
Query: 349 LAMGFAGHLSAGL-----GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403
+ + A ++ L T L D G G G
Sbjct: 258 VGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVGFDK 317
Query: 404 HWDNIAW 410
+ + W
Sbjct: 318 LLEALTW 324
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 2e-58
Identities = 58/369 (15%), Positives = 127/369 (34%), Gaps = 50/369 (13%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQT 106
+ FT + E++++ + L +G V G+ + P A+D
Sbjct: 35 TGSTVTEGFTQVRQK---GESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIP 91
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQF--ASVRAAVEMALIDAVAKSVSMP 164
+ K E L + + ++R + A++DAVAK+ +
Sbjct: 92 VIEK--EIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVT 149
Query: 165 LWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNLK 214
+ + N +P+ S + + K + ++ K+G +
Sbjct: 150 MAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGE 209
Query: 215 EDIEVLRAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-P 259
+ +E ++ +R H D + A + + ++ L E
Sbjct: 210 KLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFH 269
Query: 260 VLFEQPVHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314
+ E P+ +D E + + + + + ADE C +++DVK ++
Sbjct: 270 LRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQ 329
Query: 315 IKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTP 372
IK +G V + I +A+G+ GG ET + ++ G + L P
Sbjct: 330 IKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQV--LAKP 387
Query: 373 LLLSEDPVL 381
+ ++ ++
Sbjct: 388 GMGVDEGMM 396
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 4e-58
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 206
E A A + W V +T+ + T+P V P EAA + +
Sbjct: 43 GPRECARWWAACYEAAELGW--PAPVRDTVPVNATVPAVGPEEAARIVASSGCTTAKVKV 100
Query: 207 LKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
+ G++ D+ + A+R A+ P +D N + AV ++ L + EQP
Sbjct: 101 AERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFELE--YVEQP 158
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA 325
+ L V + + V +AADES R +D ++ ADV+ +K+ +G G
Sbjct: 159 C--ATVDELAEV----RRRVSVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLG--GV 210
Query: 326 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGY 384
+ + GL +++ VET + + L+A L + L T LL D D
Sbjct: 211 RAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPELPYACGLATLRLLHADVCDDPL 270
Query: 385 EVSG 388
Sbjct: 271 LPVH 274
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 9e-58
Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 20/361 (5%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+ R D V A+ + +G VG G L + + Q+ V E
Sbjct: 11 TRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHE 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
LK + A+AL G AV++AL D AK +PL L G
Sbjct: 71 VWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRR 130
Query: 174 NTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHP 228
N + + + + L S G++ K+KVG + D+ L ++ V
Sbjct: 131 NRVKAYASGLDFH-LDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPA 189
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
S ++D NE + +EA+ L + E G + E P+ R D +GL + + +
Sbjct: 190 GSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTL----RHAVTWT 245
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348
L + +++ + AD++N+ V + I + G+ + IG
Sbjct: 246 QINSGEYLDLQGKRLLLEAHAADILNV---HGQVTDVMRIGWLAAELGIPISIGNT---- 298
Query: 349 LAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408
+ H++ L ++++ + V E+ + GHG L
Sbjct: 299 -FLEAGVHMAVALPEVEWLEYSFQNF--DHLVEQPIEIRDGYAYAPDRPGHGLVLSEKAR 355
Query: 409 A 409
Sbjct: 356 G 356
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 6e-54
Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 34/345 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R +NVPL P A + V I + S G VG V + + + +
Sbjct: 12 RAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLL---DD 68
Query: 114 ACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
++ P +A GL+ A ++MA DA+ K PL
Sbjct: 69 MAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLI-----RMAAAGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K ++G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + G E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEG--VTWIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
K V V E+ +++ K + + K+ GV G + + + G+ +
Sbjct: 238 KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSH 297
Query: 343 GMVETRLAMGFAGHLSAGL---GCFKFIDLDTPLLLSEDPVLDGY 384
E HL A + +DL ++ G
Sbjct: 298 LFQEISA------HLLAATPTAHWLERLDLAGSVIEPTLTFEGGN 336
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 3e-53
Identities = 70/349 (20%), Positives = 125/349 (35%), Gaps = 31/349 (8%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+N+PL+ PFT + +R+ +G GWGE V A ++ A
Sbjct: 32 WVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMA------ 85
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
L + AL + + + + AAV++A DA+ K+ + L GG
Sbjct: 86 --PDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGG 143
Query: 172 VSNT----------ITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVL 220
P P AE A + ++ GF +KLK + D+ +L
Sbjct: 144 AVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAIL 203
Query: 221 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
RA+R P + +D N + ++V L E+ E P EG+ V
Sbjct: 204 RAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELD--LEYLEDPCV--GIEGMAQV--- 256
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
K K + + + +D ++ N DVI+ + K G+ + GL +
Sbjct: 257 -KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGM 315
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 388
+ E +A + + +D+ L D +++ +
Sbjct: 316 NLHSGGELGIATAAHLAVVSSTPVL-SRAIDSMYYLHADDIIEPLHLEN 363
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-52
Identities = 69/354 (19%), Positives = 126/354 (35%), Gaps = 27/354 (7%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R P+ P + + V + +E S+G VGWGE + + +V
Sbjct: 14 RVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLV 73
Query: 110 KASEACEVLKESPAMALG-------SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+ A + + A + A A +++AL D A+
Sbjct: 74 ETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAG 133
Query: 163 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 222
PLW GG + I + ++P ++ ++ +G+ KLKVG + D+
Sbjct: 134 QPLWAWLGGSGDRIGVYASG--INPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALH 191
Query: 223 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
+R + + + DAN+G+ A ++ ++L E+P+ D + +A
Sbjct: 192 VRELLGAATPLMADANQGWDLPRARQMAQRLGPAQ--LDWLEEPLRADRPA--AEWAELA 247
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
+ +A E+ + + + V+ LAK G G L + V A+GL
Sbjct: 248 -QAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGL-RY 305
Query: 341 IGGMVETRLAMGFAGHLSA------GLGCFKFIDLDTPL---LLSEDPVL-DGY 384
+ + + + HL A G D PL L L +G
Sbjct: 306 CPHYLGAGIGLQASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGR 359
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 5e-44
Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 50/358 (13%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQTAMVK 110
RP+ + L P T + + + I IE G G P +P +
Sbjct: 34 TARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPKAMK----YLVPA 89
Query: 111 ASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+ ++L P F AGL + V+MA+ DA+A++ +
Sbjct: 90 LHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYAGLS-----MIAASGVDMAVWDALARAAN 144
Query: 163 MPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKE 215
MPL L GG ++ + P AEA EL ++ + GF LKL++G+ +
Sbjct: 145 MPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAV 204
Query: 216 DIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274
DIE A+ AV D++ ++D N+G EA+ ++ ++G E+PV D+++G
Sbjct: 205 DIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLG--LEWIEEPVVYDNFDGY 262
Query: 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVR 333
+ + + E+ ++ + ++ D++ ++ GV G + V
Sbjct: 263 AQL----RHDLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAG 318
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGC-------FKFIDLDTPLLLSEDPVLDGY 384
A G+ ++ + A + ++ P+L + DG
Sbjct: 319 AWGI----------PMSTHLYPEVGAHVMRVTETAHWLEWQSWADPILQEPYALSDGD 366
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-43
Identities = 64/345 (18%), Positives = 124/345 (35%), Gaps = 33/345 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ P A +D V I + G G + + +
Sbjct: 35 RAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALK--PLVHLVEDI 92
Query: 114 ACEVLKESP-------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
E+ ++ AM GL+ + ++MA DA+ + P+
Sbjct: 93 GRELAGKALVPVDLMKAMDAKFRLLGWQGLV-----GMAVSGLDMAFWDALGQLAGKPVV 147
Query: 167 RLFGGVSNTITT-DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 224
L GG + I D + + + L + + GF +K K G +L D +++ +R
Sbjct: 148 ELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLR 207
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ PD + +LD N+ P EA + +L + E+PV +++ G V ++
Sbjct: 208 ALLGPDIALMLDFNQSLDPAEATRRIARLADYD--LTWIEEPVPQENLSGHAAV----RE 261
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + + A E+ + + +D I L KV G+ G L + A+ + +
Sbjct: 262 RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSH 321
Query: 343 GMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 384
+ + H+ +D +L V+DG
Sbjct: 322 IL------PEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGK 360
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-41
Identities = 61/358 (17%), Positives = 114/358 (31%), Gaps = 38/358 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ A + + G G GE + + A + +
Sbjct: 32 PVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLD 91
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
V A + + G+ V AA E+A +D K+ P+
Sbjct: 92 VYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVA 151
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLK 208
L GG D P + P A+ + GF ++KLK
Sbjct: 152 DLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLK 211
Query: 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +++ E ++A+R P LD N + + ++ V L + E P
Sbjct: 212 GGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDGV---LEYLEDPT- 267
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+G+ V+ + + +A + + + + V+ V+ I G++ +
Sbjct: 268 -PGIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSA 322
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
I + G+ L + +++ HL+A D TP +D V G
Sbjct: 323 HIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPG 380
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 2e-39
Identities = 55/340 (16%), Positives = 107/340 (31%), Gaps = 42/340 (12%)
Query: 61 IAPFTIATSRLDQV-ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK 119
P T + + Q E V++++ L NG V G+ + + A + + +
Sbjct: 36 GDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLND 95
Query: 120 ESPAMALG-------SVFGVVAGLLPGHQFA--SVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ G L +VR + AL+DA A + +
Sbjct: 96 HIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVVC 155
Query: 171 GVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNLKEDIEVL 220
IP+ S + K +G ++ K+G ++ E +
Sbjct: 156 DEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYV 215
Query: 221 RAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQP 265
R + +H D + P E + L + P+ E P
Sbjct: 216 RWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGP 275
Query: 266 VHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320
V + L + + + GV + ADE C + D+ ++ IK +
Sbjct: 276 VDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDL 335
Query: 321 G-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358
G + ++ + G+ GG ET ++ H++
Sbjct: 336 GGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVA 375
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 60/363 (16%), Positives = 106/363 (29%), Gaps = 38/363 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ I+++ G G GE Q A +
Sbjct: 37 PVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYADTVHLERLQAAAHAIVGRS 96
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ G G+ + V + E+A +D + P+
Sbjct: 97 VFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVS 156
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLK 208
L GG D + P A + GF+ +KLK
Sbjct: 157 DLLGGAVRDAVPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLK 216
Query: 209 VGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +E++ + A+RA PD LD N + PQ +V+V L E + E P
Sbjct: 217 GGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVAAGL-EGVL--EYLEDPT- 272
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+G+ V+ + + +A + + D + V N V+ G+ +
Sbjct: 273 -PGLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSR 327
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDGYE 385
+ + GL L + +++ HL+A D P +
Sbjct: 328 LLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRHEDVVAPGALN 387
Query: 386 VSG 388
Sbjct: 388 FCD 390
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 63/307 (20%), Positives = 112/307 (36%), Gaps = 36/307 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E P+ PL F + + + R+ G +G ++
Sbjct: 28 ETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTG--DEHETMFDIDRIIHE 85
Query: 112 SEACEVLKESPA-------------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
A ++ + + + L AAV A+ DAV
Sbjct: 86 ELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVAL---------AAVNTAIWDAVG 136
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKYRKQGFTTLKLKVGK-NLKE 215
K++ MPLW+L+GG N + A+ Y++ G +K KVG + E
Sbjct: 137 KALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGLSAAE 196
Query: 216 DIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH-RDDWEG 273
D + A R A D +DAN+GYKP AV++ ++ ++ FE+PV +D
Sbjct: 197 DAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN--IRWFEEPVEWHNDKRS 254
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 332
+ V + + V V A ++ S + +++ DV N + G L +
Sbjct: 255 MRDV----RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIA 310
Query: 333 RASGLNL 339
+ + +
Sbjct: 311 TSYDVQM 317
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/349 (18%), Positives = 119/349 (34%), Gaps = 36/349 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E VP P + T + D + + G G G V V++
Sbjct: 12 EVSAYTVPTDYPESDGTLQWDSTTMILVEAH-GGGRKGLGYTYGDVSVGR------FVES 64
Query: 112 SEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWR 167
A ++ +V+ + A G A AV++AL D A+ + +PL
Sbjct: 65 KLAGVAEGSDA-LSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLAD 123
Query: 168 LFGGVSNTITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
+ + E + G +K+KVG+ ++D E +RA R
Sbjct: 124 ALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPEKDPERVRAARE 183
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
A+ ++DAN Y ++A+ G++ E+PV +D EGL + +
Sbjct: 184 AIGESVELMVDANGAYTRKQALYWAGAFAREAGIS--YLEEPVSSEDREGLRLLR--DRG 239
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
GV++AA E +L + + D++ + + G+ G L + + R +
Sbjct: 240 PGGVAIAAGEYEWTLPQLHDLAGC--VDILQADVTRCGGITGLLRVDGICRGHQIPFSAH 297
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFI-------DLDTPLLLSEDPVLDGY 384
A + H + + ++ L G
Sbjct: 298 C------APAVSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGS 340
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 71/344 (20%), Positives = 126/344 (36%), Gaps = 30/344 (8%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E PL L P+ A IRI +G GWGE K
Sbjct: 10 ETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHV----GFTK- 64
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
L A + S+ + HQ A +AV MAL + AK+ + L+GG
Sbjct: 65 -RIIPFLLGKQAGSRLSLVRTIQK---WHQRA--ASAVSMALTEIAAKAADCSVCELWGG 118
Query: 172 -------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAI 223
V + + P + + K+GF +K+K+G + KED+ + A+
Sbjct: 119 RYREEIPVYASFQSYSDSP-QWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINAL 177
Query: 224 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIA 281
+ + ILDAN+ Y A + E T + + E+P+ D + +
Sbjct: 178 QHTAGSSITMILDANQSYDAAAAFKWERYFSEW--TNIGWLEEPLPFDQPQDYAML---- 231
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
+ + V VA E+ + ++ D+I + V G+ + +++ R G+
Sbjct: 232 RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRAS 291
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGY 384
+ L+ +A A L + + D + D + + +
Sbjct: 292 AHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPF 334
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 61/369 (16%), Positives = 124/369 (33%), Gaps = 52/369 (14%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIE-----LSNGCVGWGEAPVLPHVTAEDQQTAM 108
R + P+ +P A ++ + + VG+G + +
Sbjct: 12 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG-----GL 66
Query: 109 VKASEACEVLKESPAMALGSVFGVV----------AGLLPGHQFASVRA--AVEMALIDA 156
++ A +L+ P L + PG A ++MA+ DA
Sbjct: 67 IRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDA 126
Query: 157 VAKSVSMPLWRLFGGVSNTITTD---------ITIPIVSPAEAAELASKYRKQGFTTLKL 207
VAK PL+RL P + Y +G+ +K+
Sbjct: 127 VAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKM 186
Query: 208 KVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
K+G ++ED + A+ + D+ +DAN + + + + L + +E+
Sbjct: 187 KIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYP--LFWYEEV 244
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK----GNLADVINIKLAKV- 320
D+ ++ + + +A E+ S D + +++ D + A
Sbjct: 245 GDPLDYALQAALA----EFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSY 300
Query: 321 GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG---CFKFIDLDTPLLLSE 377
G+ +EV++ G + + +++AGLG + DL P
Sbjct: 301 GLCEYQRTLEVLKTHGWSPS---RCIPHGGHQMSLNIAAGLGLGGNESYPDLFQPYGGFP 357
Query: 378 DPVL--DGY 384
D V +G+
Sbjct: 358 DGVRVENGH 366
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 54/356 (15%), Positives = 111/356 (31%), Gaps = 39/356 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ + I I + G GE+ Q+ A +K
Sbjct: 36 PVAFHDMPLLNSVGVHEPFALRSIIEIITEDS-YGLGESYGDSAHLDRLQKAADKIKGLS 94
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
++ G+ ++ V + E+A +D K + +
Sbjct: 95 VYSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVS 154
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLK 208
L GG D P + P + A K + GF +KLK
Sbjct: 155 DLLGGRVRDSVQYSAYLFYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLK 214
Query: 209 VGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +++ ++A+ P LD N + + + V ++L + E P
Sbjct: 215 GGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVAKELEGI---VEYLEDPA- 270
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+ EG+ V + + +A + + + D + + + VI G+ +
Sbjct: 271 -GEIEGMAAV----AKEASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQ 325
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVL 381
+ + GL L + +++ HL++ + D P ++ V+
Sbjct: 326 TLASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVV 381
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-34
Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 38/346 (10%)
Query: 15 PQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLN--VPLIAPFTIATSRLD 72
P P + ++ +N ++ + + + PL+ +P T+
Sbjct: 9 PSLPCWRCFAASGRITLSIKRFTQN-SRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTI 67
Query: 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------- 122
+ + + IR+E S G G+GEA A T+++ + A ++
Sbjct: 68 KRDAIIIRVETSEGITGYGEAHPGRSPGA---ITSLIHNTIAPMLIGMKATDCVGAWQRV 124
Query: 123 ---AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI--- 176
++ + A + + ++MAL D K+ +MPL+ L GG I
Sbjct: 125 HRMQLSSHGLGAGAALAI---------SGIDMALWDIRGKAANMPLYELLGGSKRRIPAY 175
Query: 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILD 235
I + AE A +Y +G+ LKL++G + DIE +R +R + + + D
Sbjct: 176 AGGIALGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTD 235
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
AN Y +A VL L E+ E+P +D+ +AK V +AA E+
Sbjct: 236 ANTAYTMADARRVLPVLAEIQ--AGWLEEPFACNDFASY---REVAKITPLVPIAAGENH 290
Query: 296 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
+ + +++ V L+K G+ + I + A + +
Sbjct: 291 YTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPIN 336
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 36/383 (9%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVD-VQRAENRPLNVPLIAPFTIATSR------LDQV 74
MA S + A + + T T D ++ + +PL P + A L +V
Sbjct: 1 MALSANSDAVTYAKAANTRTAAETGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEV 60
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV- 133
+ I +G G G + A K E + L + ++ +
Sbjct: 61 AIIIAEIRSRDGFEGVGFS--YSKRAGGQGIYAHAK--EIADNLLGEDPNDIDKIYTKLL 116
Query: 134 -AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITIPIVSP 187
AG G +V+A +++AL D AK +PL +L G +++ T
Sbjct: 117 WAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPL 176
Query: 188 AEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEA 245
+ + R+ G +KLKVG+ N EDI L A+R A+ + ++DAN+ + + A
Sbjct: 177 DQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETA 236
Query: 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305
+ + K+ + + E+P+ D EG + +A E S + ++++
Sbjct: 237 IRMGRKMEQFN--LIWIEEPLDAYDIEGHAQL----AAALDTPIATGEMLTSFREHEQLI 290
Query: 306 KGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
GN +D + +V G+ L+I+++ G L +E L HLSA
Sbjct: 291 LGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVHL------HLSAAYPLE 344
Query: 365 K---FIDLDTPLLLSEDPVLDGY 384
+ PL + + DG
Sbjct: 345 PWLEHFEWLNPLFNEQLELRDGR 367
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 27/291 (9%)
Query: 52 ENRPLNVPLIAPFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
+PL T +T + E + +RIE S+G G G MV
Sbjct: 8 RTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYT--YTVNHGGAAVATMVD 65
Query: 111 ASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+L +M + G S +AV++AL D
Sbjct: 66 KDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHA-----TSAISAVDIALWDLKGIRAR 120
Query: 163 MPLWRLFGGVSNTIT--TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEV 219
PLW+LFGG + + A+ A ++ GF +K+KVG+ +LKED++
Sbjct: 121 TPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDR 180
Query: 220 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ A+R + ++DAN + A+ L E+P DD G +
Sbjct: 181 VSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFD--LHWIEEPTIPDDLVGNARI- 237
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ G ++A E+ +L D V+ + ++ + G ++
Sbjct: 238 ---VRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 71/352 (20%), Positives = 126/352 (35%), Gaps = 35/352 (9%)
Query: 52 ENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
+PL P + A + ++ + IE + G G G + Q
Sbjct: 19 RISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFS--YSKRAGGPGQ 76
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSV 161
A + E L + ++ + AG G S +A A ++AL D AK
Sbjct: 77 FAHAR--EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRA 134
Query: 162 SMPLWRLFGGVSNTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDI 217
+ L +L G +++ T + AS ++G +KLKVG+ + DI
Sbjct: 135 GLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQPDGALDI 194
Query: 218 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ A+R + ++DAN+ + A + V E+P+ D EG
Sbjct: 195 ARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFN--LVWIEEPLDAYDHEGHAA 252
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
+ +F +A E S + +++ AD + +V G+ L+I + +
Sbjct: 253 L----ALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHA 308
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 384
GL L +E + HL+A + PL + DG
Sbjct: 309 GLMLAPHFAMELHV------HLAAAYPREPWVEHFEWLEPLFNERIEIRDGR 354
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 62/364 (17%), Positives = 123/364 (33%), Gaps = 50/364 (13%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+ L++P + + + +R+ + G +GWGE P +
Sbjct: 9 DLFYLSMPEVTDAADGSQDA-----LLVRVA-AGGHIGWGECEAAPLPSIAAFVCPKSHG 62
Query: 112 SEACEVLK-----ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
C + + AL + + + +EMAL D +
Sbjct: 63 --VCRPVSDSVLGQRLDGPDDIARIAALVGYNSMDLLQA-----PHMLSGIEMALWDLLG 115
Query: 159 KSVSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGK----N 212
+ +S P W L G S+ + + +P E E A R+ GF +K G
Sbjct: 116 RRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGRGT 175
Query: 213 LKEDIEVLRAIR-AVHPDSSFILDANEGYKP--QEAVEVLEKLYEMGVTPVLFEQPVHRD 269
+ D + + A R + PD ++D + + + A L L G + E+P
Sbjct: 176 VAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAG--VLWLEEPFDAG 233
Query: 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ A V +A E+ + + ++ I I ++ G+ A +
Sbjct: 234 ALAAHAAL---AGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRV 290
Query: 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLL--LSEDPVL-- 381
+ +A G+ + + LA+ + AGL + + L ++ D +
Sbjct: 291 ADAAQARGI-TYVNHTFTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPD 349
Query: 382 -DGY 384
+G
Sbjct: 350 AEGL 353
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 60/296 (20%), Positives = 107/296 (36%), Gaps = 30/296 (10%)
Query: 52 ENRPLNVPLIA-PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E L++PL + + +T + V +I S+G G+G H+ ++ T+ +
Sbjct: 7 EPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCIS 66
Query: 111 ASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRA--AVEMALIDAVAKS 160
A +L E + +A V G + A AV++AL D AK
Sbjct: 67 DCYAPLLLGEDASDHSRLWTKLARYPSLQWV-----GRAGITHLALAAVDVALWDIKAKK 121
Query: 161 VSMPLWRLFGGVSNT-----ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLK 214
+PLW GG T + A A + GFT LK+KVG +
Sbjct: 122 AGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPN 181
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DI L A+R V +D N + ++ FE+P+ DD
Sbjct: 182 IDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD--IYWFEEPLWYDDVTS 239
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ + +A E ++D + + + + ++ G+ +++
Sbjct: 240 HARL----ARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQV 291
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-31
Identities = 52/376 (13%), Positives = 107/376 (28%), Gaps = 56/376 (14%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P+ ++ + + ++ ++G G GE P + + A
Sbjct: 34 IPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPGGEKIRQ-----TLEDAKP 88
Query: 114 ACEVLKESP------------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
V+ ++ G V A+E A++D + + +
Sbjct: 89 L--VIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFL 146
Query: 162 SMPLWRLFGG-------------------------------VSNTITTDITIPIVSPAEA 190
+ + L G ++P
Sbjct: 147 GVTVASLLGDGQQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESV 206
Query: 191 AELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248
LA Y K GF KLK G + E+ E + A+ PD+ LD N + EAV++
Sbjct: 207 VRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266
Query: 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308
++L + E P + + + G+ A + + +
Sbjct: 267 GKQLKGV---LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQ 323
Query: 309 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 367
D+ + G++ + ++ GL +++ H++A G I
Sbjct: 324 SVDIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAI 383
Query: 368 DLDTPLLLSEDPVLDG 383
D +
Sbjct: 384 DTHWIWQEGNQRLTKE 399
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 35/297 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAI--RIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ L+ P+ + + ++ I + G G G + +
Sbjct: 9 KAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYDLAV---LKRAI 65
Query: 110 KASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
+ +++ E P + G V L + + V++AL D +++
Sbjct: 66 EDVIGPQLIGEDPANINYLWHKVFHGEVSR---NLGHRSVGIAAMSGVDIALWDLKGRAM 122
Query: 162 SMPLWRLFGGVSNTITTDITIPI--------VSPAEAAELASKYRKQGFTTLKLKVGKNL 213
+ P+++L GG + + ++P +AA+ + + +QGFT KLKVG+
Sbjct: 123 NQPIYQLLGGKFH----TRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGRAP 178
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D LRA+R V D ++DAN+ +A+ +L L E G FE+P+ DD E
Sbjct: 179 RKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG--CYWFEEPLSIDDIE 236
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
G + V +A E+ + + ++ + DV+ ++ G+ AL I
Sbjct: 237 GH---RILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAI 290
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 58/384 (15%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP-----------VLPHVTAED 103
P+ + + + ++ + G G GE P V+P V +
Sbjct: 17 PVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPGGEGIRQALERVIPLVVGQS 76
Query: 104 Q----------QTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
+ A+ A + + + +V AVE AL
Sbjct: 77 IGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAAL 136
Query: 154 IDAVAKSVSMPLWRLFGG-------------------------------VSNTITTDITI 182
+D + + + +P+ L G ++
Sbjct: 137 LDLLGQFLEVPVAELLGAGQQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHE 196
Query: 183 PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 240
++PA A LA ++ GF KLK G E++E + AI+A P + LD N +
Sbjct: 197 AAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAW 256
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
EA+ + + + E P + V K G+ A +
Sbjct: 257 SLNEAIALCKGQGHL---VAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIATDWRQ 313
Query: 301 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360
+ V+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 314 MGHAVQLHAVDIPLADPHFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAA 373
Query: 361 L-GCFKFIDLDTPLLLSEDPVLDG 383
G ID +++ +
Sbjct: 374 APGNITAIDTHWIWQEAQERLTRE 397
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-29
Identities = 58/316 (18%), Positives = 116/316 (36%), Gaps = 25/316 (7%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+R+ G VGWGE + A A++ A V+ + V
Sbjct: 55 VRMTTEAGTVGWGETYGIVAPGA---VAALINDLLAGFVIGRDASDPSAVYDDLYDMMRV 111
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIVSPA 188
G G + AA+++AL D + + L GG ++ ++ +P +
Sbjct: 112 RGY-----TGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERTLK 166
Query: 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVE 247
ELA ++ +GF K + +R + P + D + P+ A+E
Sbjct: 167 ARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERALE 226
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
++ ++ P E PV +D GL V V +A E R+ D++ ++
Sbjct: 227 LIAEMQPFD--PWFAEAPVWTEDIAGLEKV----SKNTDVPIAVGEEWRTHWDMRARIER 280
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
++ ++ G+ + I + G++++ V + + + S+ L K
Sbjct: 281 CRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTLSMLKGH 340
Query: 368 DLDTPLLLSEDPVLDG 383
+ + +LDG
Sbjct: 341 EFQHSIFEPNRRLLDG 356
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-29
Identities = 65/393 (16%), Positives = 117/393 (29%), Gaps = 57/393 (14%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + +E +G G GE P + + K
Sbjct: 14 PVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILN-----GLEKCRSL 68
Query: 115 CEVLKESP------------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
V +A G V A+E AL D +++
Sbjct: 69 --VEGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALG 126
Query: 163 MPLWRLFGG--------------------------------VSNTITTDITIPIVSPAEA 190
MP+ L G + ++P
Sbjct: 127 MPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAV 186
Query: 191 AELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248
A LA Y + GF KLK G +E+ + +RA+ P++ LD N +K EAV V
Sbjct: 187 ANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDPNGAWKLDEAVRV 246
Query: 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308
LE + + E P ++ K + G+ A + ++ V+ N
Sbjct: 247 LEPIKHL---LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLN 303
Query: 309 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 367
D+ + GA+ + E+ G+ +++ H++A G I
Sbjct: 304 SVDIPLADCHFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGEITAI 363
Query: 368 DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
D + + +++ G G
Sbjct: 364 DTHWIWQDGQRITREPFQIRDGKLTVPKTPGLG 396
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-28
Identities = 67/368 (18%), Positives = 116/368 (31%), Gaps = 64/368 (17%)
Query: 52 ENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E L + V I +G G+G + + AED
Sbjct: 18 EFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAED------ 71
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
V+ +F L + R +E ++D + + P++ L
Sbjct: 72 -------VIGRRLL----DLFDDRGRLR-----EAYRLQLEYPVLDWLGQRQGKPVYDLV 115
Query: 170 GGVSNTITTDITIPI----------------VSPAEAAELASKYRKQGFTTLKLKVG--- 210
G + +P + A E A + +G K+KVG
Sbjct: 116 SGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGG 175
Query: 211 ------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
+ K DI ++R I P ++DAN Y EVL L ++ E
Sbjct: 176 RHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN--LYWLE 233
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
+ H D+ + + V +A E S ++ +G DV+ + G
Sbjct: 234 EAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRG-RVDVLQYDIIWPGFT 292
Query: 324 GALEIIEVVRASGLNLMI---GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL---LLSE 377
+E+ E + A GL G + HLSA + F+F++ D +
Sbjct: 293 HWMELGEKLDAHGLRSAPHCYGNAYGIYASG----HLSAAVRNFEFVEYDDITIEGMDVS 348
Query: 378 DPVL-DGY 384
+ +G
Sbjct: 349 GYRIENGE 356
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 31/324 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+RIE NG VGWGE L A ++ A + P +
Sbjct: 57 VRIETENGAVGWGETYGLVAPRA---TMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRV 113
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IPIVSPA 188
G + AA+++AL D K +P+ +L GG + I I+ +P + A
Sbjct: 114 RGYTGGF----YVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPEDTRA 169
Query: 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVE 247
+ AELA+ ++ +GF++ K + + +R + P D + + EAV
Sbjct: 170 KRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVA 229
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
+++ + G E PV +D +GL V ++A E R++ D+ V
Sbjct: 230 LIKAMEPHG--LWFAEAPVRTEDIDGLARV----AASVSTAIAVGEEWRTVHDMVPRVAR 283
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
++ ++ G+ + I + ++ + + + + SA L
Sbjct: 284 RALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASAALANVDCH 343
Query: 368 -------DLDTPLLLSEDPVLDGY 384
+ + LL+ + L+G
Sbjct: 344 EFQHSIFEPNRRLLVGDMDCLNGE 367
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 47/299 (15%)
Query: 52 ENRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
E R A QVE + + +G G E +
Sbjct: 7 EVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFT------APEIVRPH 60
Query: 108 MVKASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+++ ++ E +A A V+ AL D +
Sbjct: 61 VIEKFVKKVLIGEDHRDRERLWQDLAHWQRGS------AAQLTDRTLAVVDCALWDLAGR 114
Query: 160 SVSMPLWRLFGGVSNTI--------TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG- 210
S+ P+++L GG + + ++ + +P + A K+G+ +KL
Sbjct: 115 SLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWM 174
Query: 211 ------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
++K D++ A+R AV PD ++DA Y +A+ + L ++G E
Sbjct: 175 PPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLG--FDWIE 232
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINIKLAKVG 321
+P+ + D + V ES + +K D++ + VG
Sbjct: 233 EPMDEQSLSSYKWL----SDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG 287
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 31/258 (12%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
I+I +G GWGEA + E ++K E + ++L S
Sbjct: 39 IKITTEDGIEGWGEAFSINF--REKGIAIIIK--ELFREISNIPNLSIKSFYNKISLLSD 94
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTDITIPIV 185
G F+S +A+E+AL D K ++PL L T +
Sbjct: 95 GH------RGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKK 148
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQ 243
+ K+ + + +K+ +L I+ + +R V + +LD
Sbjct: 149 DTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLD 208
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
+ L+++ P E+PV ++ L + K+ F + V E L ++
Sbjct: 209 QTKSFLKEVSSFN--PYWIEEPVDGENISLLTEI----KNTFNMKVVTGEKQSGLVHFRE 262
Query: 304 IVKGNLADVINIKLAKVG 321
++ N AD+ N ++ +G
Sbjct: 263 LISRNAADIFNPDISGMG 280
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 34/288 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA---PVLPHVTAEDQQTAM 108
E L VP + V +++ G VG GEA P++ E QT
Sbjct: 9 EVLHLRVPAMDADCEWGEDA-----VIVKVHTDKGIVGVGEADSSPLVVQACIEAPQTNF 63
Query: 109 VKASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
++ E+ M GS + G +A+++AL D +
Sbjct: 64 YCNGLKRLLIGENALEIERLWNKMYWGSNYMGRRGAG-----IHAISAIDIALWDIAGQF 118
Query: 161 VSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVG---KNLKE 215
+P+ L GG + I T IP P + + + QGF+++K G +
Sbjct: 119 YGVPVHTLLGGKYRDKIRCYGTFIPADKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDT 178
Query: 216 DIEVLRAIR-AVHPDSSFILDANEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
D +++A+R A P+ +D + + + ++L E E+PV D
Sbjct: 179 DYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFN--LNWIEEPVLADSLIS 236
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A ES + + ++ + + AD++ + + G
Sbjct: 237 YEKL----SRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCG 280
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 46/268 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+R+ +G GWG+ + + + +
Sbjct: 39 VRVTTQDGAQGWGQVSTYHADIT---------CTVLHRQVAPWMLGQDITDLDDLLDIVT 89
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITI 182
PG A V+ A+ D K P+ + GG I + +
Sbjct: 90 EREHKF------PGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKR 143
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIR-AVHPDSSFI 233
I EA L QGFT K++ G + E++ +R + D +
Sbjct: 144 DITPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLL 203
Query: 234 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293
+DAN Y P A+EV L + G FE+P + V D + V E
Sbjct: 204 IDANSCYTPDRAIEVGHMLQDHG--FCHFEEPCPYWELAQTKQV----TDALDIDVTGGE 257
Query: 294 SCRSLDDVKKIVKGNLADVINIKLAKVG 321
L ++++ D++ + +G
Sbjct: 258 QDCDLPTWQRMIDMRAVDIVQPDILYLG 285
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 56/351 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ + ++G G GEAP + A+ +A V+ + M G +
Sbjct: 42 VILTDNSGHTGVGEAPGGATIEN-----ALTEAIPH--VVGRPISILNKIVNDMHNGYLD 94
Query: 131 GVVAGLLPGHQFASVR----AAVEMALIDAVAKSVSMPLWRLFGG--------------- 171
G +R AA+E AL+D + + + +P+ L G
Sbjct: 95 ADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFY 154
Query: 172 VSNTITTDITIP-----------------IVSPAEAAELASKYRKQGFTTLKLKVG-KNL 213
V + TD+ + + A A+ + GF KLK G
Sbjct: 155 VGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEG 214
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
++I+ + ++ PD+ LD N + EA+++ + L ++ E P ++
Sbjct: 215 SKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQLCKGLNDV---LTYAEDPCIGENGYS 271
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
+ + + G+ A + + ++ + D+ + GA + ++
Sbjct: 272 GREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLADPHFWTLTGASRVAQLCN 331
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
GL +++ H+ A G +D + +
Sbjct: 332 EWGLTWGCHSNNHFDISLAMFSHVGAAAPGNPTALDTHWIWQEGDFYLTKN 382
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 57/312 (18%), Positives = 109/312 (34%), Gaps = 58/312 (18%)
Query: 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVEN------VAIRIELSNGCVGWGEAPVL 96
T + P + D + + + +E +G +G G A +
Sbjct: 30 TRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALA 89
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF----GVVAGLLPGHQFAS 144
P V ++ A V+ E P M S G+ +
Sbjct: 90 PSVVK-----KVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAI------- 137
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELASKY 197
+A+++A+ D + K V P+++L GG + IP+ S + A +
Sbjct: 138 --SAIDIAIWDLMGKLVGKPVFKLLGGRTKD-----RIPVYYSKLYAGSIEAMQKEAEEA 190
Query: 198 RKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVL 249
K G+ K + G ++E+++ + A+R + D+ +L+ G+ A +L
Sbjct: 191 MKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRML 250
Query: 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309
KL P E+PV DD G + V ++ E S+ +++
Sbjct: 251 PKLAPYE--PRWLEEPVIADDVAGYAEL----NAMNIVPISGGEHEFSVIGCAELINRKA 304
Query: 310 ADVINIKLAKVG 321
V+ +VG
Sbjct: 305 VSVLQYDTNRVG 316
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 48/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+++ +G GWGE + A+++ A + E+P + G
Sbjct: 27 VKLTTDDGITGWGECYAASV--GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFT 84
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
P + +E+A D + K+ P+W L GG N
Sbjct: 85 QR------PDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHH 138
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIR- 224
IT S AAE A+ +G+T +K ++ +E R IR
Sbjct: 139 PITPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRA 198
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
AV + + + + A+ + + + P+ +E+PV D+ + V
Sbjct: 199 AVGDKADLLFGTHGQFTTAGAIRLGQAIEPYS--PLWYEEPVPPDNVGAMAQV----ARA 252
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ VA E + + +++ A ++ L + G
Sbjct: 253 VRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAG 289
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++E G GWGE + A V E + L + P+ M
Sbjct: 19 LKVETDEGVTGWGEPVIEGRART---VEAAVH--ELSDYLIGQDPSRINDLWQTMYRAGF 73
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPA 188
+ G S A ++ AL D K + +P++ L GG+ + T + PA
Sbjct: 74 YR------GGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPA 127
Query: 189 EAAELASKYRKQGFTTLKLKVG---------KNLKEDIEVLRAIR-AVHPDSSFILDANE 238
+ + GF KL + + + + IR A F LD +
Sbjct: 128 DVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHG 187
Query: 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
A ++++L P+ E+PV + E + + +AA E S
Sbjct: 188 RVSAPMAKVLIKELEPYR--PLFIEEPVLAEQAETYARL----AAHTHLPIAAGERMFSR 241
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 242 FDFKRVLEAGGVSILQPDLSHAG 264
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 45/275 (16%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++++ +G G GE ++ +L P
Sbjct: 26 VKLKTDDGIEGVGEIYSATF--GPKAMAPIIDDVFERHLLNRDPHHVERLFRQAYSSGFT 83
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------ITTDI 180
+ V + +EMA D + K+ + P++ L GG +
Sbjct: 84 QRPDLTM-----MGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKG 138
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIR-AV 226
P AAE A++ K GFT +K + L R +R AV
Sbjct: 139 EYDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAV 198
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
+ + + P A+ + ++L + P+ FE+PV E + V
Sbjct: 199 GSKADLLFGTHGQMVPSSAIRLAKRLEKYD--PLWFEEPVPPGQEEAIAQV----AKHTS 252
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ +A E + + K+++ A ++ + +A+VG
Sbjct: 253 IPIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 39/284 (13%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P++ + + ++ + + + +E N G+ + TA + +V+
Sbjct: 49 TPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVS------TAGEMGCFIVEKHL 102
Query: 114 ACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+ + M +++ +G L + + V++AL D K V +P+
Sbjct: 103 NRFIEGKCVSDIKLIHDQMLGATMYYSGSGGL----VMNTISCVDLALWDLFGKVVGLPV 158
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIE 218
++L GG I + +LA ++ GF K+ +++D
Sbjct: 159 YKLLGGAVRD-----EIQFYATGARPDLA---KEMGFIGGKMPTHWGPHDGDAGIRKDAA 210
Query: 219 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
++ +R PD +LD A ++ E+ + +EG +
Sbjct: 211 MVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFN--LKWIEECLPPQQYEGYREL 268
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
G+ V + E +L + + + D++ + G
Sbjct: 269 K--RNAPAGMMVTSGEHHGTLQSFRTLAETG-IDIMQPDVGWCG 309
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 5e-22
Identities = 49/274 (17%), Positives = 93/274 (33%), Gaps = 42/274 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ I G G GEA + M+K ++ + P+ M S +
Sbjct: 23 VEISTDEGITGAGEAGIAYG-VGGTAAAGMIKDLSERFLIGKDPSRIEELWSTMYDHSFW 81
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTDITIPIVS 186
G + + +A+E AL D K + +P++ LFGG +
Sbjct: 82 AKNGGAI----IFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADT 137
Query: 187 PAEAAELASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIR-AVH 227
P E A + K+G+ LK + ++ ++A+R A
Sbjct: 138 PDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAG 197
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
P+ ++D + G E + K+ E+ E+P D L + ++ +
Sbjct: 198 PEIELMVDLSGGLTTDETIRFCRKIGELD--ICFVEEPCDPFDNGALKVI----SEQIPL 251
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+A E + +KI + +I + G
Sbjct: 252 PIAVGERVYTRFGFRKIFELQACGIIQPDIGTAG 285
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 63/324 (19%), Positives = 107/324 (33%), Gaps = 64/324 (19%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P ++ + T V I + +G G G L T + V A
Sbjct: 18 PTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGKGT--EVVVCAVNALA- 74
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVR-----------AAVEMALIDAVAKSVSM 163
+ + F L AAV A+ D AK
Sbjct: 75 -HHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGK 133
Query: 164 PLWRLFGGVSN---------------------------------------------TITT 178
P+W+L + TT
Sbjct: 134 PVWKLLVDMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTT 193
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN 237
S +L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN
Sbjct: 194 SCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDAN 253
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
+ + EAVE + KL + P+ E+P DD G +S A G+ +A E C +
Sbjct: 254 QRWDVPEAVEWMSKLAKFK--PLWIEEPTSPDDILGHATISK-ALVPLGIGIATGEQCHN 310
Query: 298 LDDVKKIVKGNLADVINIKLAKVG 321
K++++ + I ++G
Sbjct: 311 RVIFKQLLQAKALQFLQIDSCRLG 334
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 36/264 (13%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP--------AMALGSVF 130
+RI +G VGWGEA + A +V A + + M V
Sbjct: 28 VRITAEDGTVGWGEASPMLGGIA---SLGVVARDIAPFLEGQEVLDHAVLLDRMMHRLVK 84
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----ITTDITIPIV 185
G+ + AA ++AL D K + P+++L GG T +
Sbjct: 85 LGPEGIA-----TAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARS 139
Query: 186 SPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDAN 237
E+A + + +K++ ++ DI RA+R + PD+ DAN
Sbjct: 140 VDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDAN 199
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
GY A+ V L ++G FE+PV +G V + ++V+A E +
Sbjct: 200 NGYSVGGAIRVGRALEDLG--YSWFEEPVQHYHVGAMGEV----AQRLDITVSAGEQTYT 253
Query: 298 LDDVKKIVKGNLADVINIKLAKVG 321
L +K ++ ++ + K+G
Sbjct: 254 LQALKDLILSG-VRMVQPDIVKMG 276
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 7e-22
Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 63/289 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
++I G G+GE + V A + L P M
Sbjct: 30 VKINTDEGISGFGEVGLAYGVGA-------SAGIGMAKDLSAIIIGMDPMNNEAIWEKML 82
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ +G G + F++ + +++AL D K+ +PL+++ GG S
Sbjct: 83 KKTFWGQGGGGI----FSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQ 138
Query: 176 ---ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------------KNL 213
+ P + A+ A +G+ +K+ K L
Sbjct: 139 FGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKIL 198
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
+ + + AIR AV PD I + + A++ + E+G +E+PV +
Sbjct: 199 RLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG--IFYYEEPVMPLNPA 256
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ V DK + +AA E + ++ VI + G
Sbjct: 257 QMKQV----ADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCG 301
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 8e-22
Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 42/272 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+++ NG G GEA P + + + +K P M
Sbjct: 29 VKVTDENGVYGLGEADGPPECMK--AFSEIENEHKWLNNIKEAVIGRDPLEFRANYNRMY 86
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ + + GL + ++MAL D K + +P ++L GG
Sbjct: 87 DTTKWIGMRGL-----GLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYP 141
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAIR-AVHPDS 230
L +K +++G +K+ + + KE + LR +R + D
Sbjct: 142 SVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDM 201
Query: 231 SFILDANEGYKP-QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++D + Q+A +L ++ E + DD G + +
Sbjct: 202 DMMVDCLYRWTDWQKARWTFRQLEDID--LYFIEACLQHDDLIGHQKL----AAAINTRL 255
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + ++ ++ V+ + G
Sbjct: 256 CGAEMSTTRFEAQEWLEKTGISVVQSDYNRCG 287
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 51/289 (17%), Positives = 101/289 (34%), Gaps = 43/289 (14%)
Query: 53 NRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++ P+ SR ++ + + + IE S+G VG+ +
Sbjct: 33 DDHISTPMGKYPEYRQSRRSFGINVLGTLVVEIEASDGNVGFAVTTGGEPAAY------I 86
Query: 109 VKASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
V+ A + M +++ GL+ + + V++AL D + K
Sbjct: 87 VEKHLARFLEGARVTDIERIWDQMYNSTLYYGRKGLV-----INTISGVDLALWDLLGKV 141
Query: 161 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNL 213
P+ +L GG + + +LA +K GF K+ + + L
Sbjct: 142 RREPVHQLLGGAVRD-----ELQFYATGARPDLA---QKMGFIGGKMPLHHGPSEGEEGL 193
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
K+++E L +R V PD + D A + E G E+ + DD+
Sbjct: 194 KKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYG--LKWIEEALPPDDYW 251
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
G + G+ V E + + +++ D+I + G
Sbjct: 252 GYAELRR--NAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCG 298
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 5e-21
Identities = 53/283 (18%), Positives = 99/283 (34%), Gaps = 53/283 (18%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++ G G GEA + V ++K + +L E P + +
Sbjct: 26 VKVSTDEGIYGLGEAGIAYGV-GGSAAAGILK--DYAALLIGEDPFNTEAIWEKLFKKTF 82
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
+G G + S +A ++A D K++++P+++L GG +
Sbjct: 83 WGQGGGTV----IFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWG 138
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------------KNLKEDIEV 219
E AE A K +G+ +K+ V + +K +E
Sbjct: 139 KERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVER 198
Query: 220 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ AIR AV PD I++ + A++ + + E +E+ + L
Sbjct: 199 VEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFN--IFFYEEINTPLNPRLLKEA- 255
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
K K + +A+ E S ++ DVI L G
Sbjct: 256 ---KKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCG 295
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 9e-21
Identities = 48/288 (16%), Positives = 103/288 (35%), Gaps = 58/288 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
IR+ +G G GE + +++ + ++ E P +
Sbjct: 30 IRVNTDSGLSGIGEVGLAYGA-GAKAGVGIIR--DLAPLIVGEDPLNIEKIWEFFFRKTF 86
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
+G+ G + F + +A+++AL D K + +P+++L GG +N
Sbjct: 87 WGMGGGNV----FYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWG 142
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLK 214
D +V+P E AE A G+ +K+ LK
Sbjct: 143 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 202
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ A+R A+ D+ I++ + A++ + + + L+E+P+H + +
Sbjct: 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYR--IFLYEEPIHPLNSDN 260
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ V + +A E + +++++ V L G
Sbjct: 261 MQKV----SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 51/285 (17%), Positives = 96/285 (33%), Gaps = 59/285 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA-------MAL 126
+++ + G G+GE + K +E +V E P
Sbjct: 27 VKLVTACGITGYGEIYNATFGP-----DLVAKMAE--DVFARQFAGEDPHHIEKLWHKTY 79
Query: 127 GSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------- 175
G+ + + V + +EMA D + K+ P + L GG +
Sbjct: 80 GAGYTQRPDVT----VMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPT 135
Query: 176 -----ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDI 217
D AAE A+K QGFT +K ++L+
Sbjct: 136 DGDVYPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSE 195
Query: 218 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ IR AV + + + + A + +L P+ FE+P+ + E +
Sbjct: 196 AFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYD--PLWFEEPIPPEKPEDMAE 253
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V + VA E + + ++++ A ++ + L +VG
Sbjct: 254 V----ARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVG 294
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 49/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+R+ G G G A A +V ++ M + + +
Sbjct: 47 VRVTTEQGITGHGCATFQQRPLA---VKTLVDEYLQPLMIGRDANNIEDLWQMMNVNAYW 103
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + + V+MAL D + MPL++LFGG S I +
Sbjct: 104 R------NGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETLEA 157
Query: 190 AAELASKYRKQGFTTLKLKVG------------------------KNLKEDIEVLRAIR- 224
QG+ ++ ++G + + +E+ A+R
Sbjct: 158 LFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALRE 217
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
+ D +E PQ+AV++ ++L P E + L V + +
Sbjct: 218 KYGWKLHILHDVHERLFPQQAVQLAKQLEPFQ--PYFIEDILPPQQSAWLEQV----RQQ 271
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V +A E + + ++ D I ++++G
Sbjct: 272 SCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIG 308
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 45/277 (16%), Positives = 102/277 (36%), Gaps = 49/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ +E + G G+G A A MV ++ ++ M + + +
Sbjct: 26 VVVETNEGVTGFGCATFQQRPLA---VKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYW 82
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + + V+MAL D AK MPL +LFGG S I +
Sbjct: 83 R------NGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEG 136
Query: 190 AAELASKYRKQGFTTLKLKVG------------------------KNLKEDIEVLRAIR- 224
+L + ++G+ ++ ++G + + + + +++R
Sbjct: 137 IYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLRE 196
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
+ D +E P +A++ +++ + P E + + E L ++ + +
Sbjct: 197 KYGNQFHILHDVHERLFPNQAIQFAKEVEQYK--PYFIEDILPPNQTEWLDNI----RSQ 250
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
VS+ E + ++ K ++ D I ++++G
Sbjct: 251 SSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIG 287
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 7e-20
Identities = 71/332 (21%), Positives = 113/332 (34%), Gaps = 67/332 (20%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P + L + V +R + + G+G + D QTA V A
Sbjct: 15 PTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGR--GNDVQTAAVAA--L 70
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVR-----------AAVEMALIDAVAKSVSM 163
E + + + G A L AV A D A++ +
Sbjct: 71 AEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANK 130
Query: 164 PLWRLFGGVSN---------------------------------------------TITT 178
PLWR ++ TT
Sbjct: 131 PLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTT 190
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDAN 237
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN
Sbjct: 191 SPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDAN 250
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
+ + A++ + +L E E+P DD G + I + V V+ E ++
Sbjct: 251 QRWDVGPAIDWMRQLAEFD--IAWIEEPTSPDDVLGH---AAIRQGITPVPVSTGEHTQN 305
Query: 298 LDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
K++++ D+I I A+V GV L I
Sbjct: 306 RVVFKQLLQAGAVDLIQIDAARVGGVNENLAI 337
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 42/272 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+++ NG G GEA P + + + P M
Sbjct: 34 VKVTDENGVYGLGEADGSPDAIL--AYANIETEHKWLTNITEKAIGRLPIEINAIWDAMY 91
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ + + GL + ++MAL D K + +P ++L GG +
Sbjct: 92 DATQWQGMRGL-----GMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYP 146
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----NLKEDIEVLRAIR-AVHPDS 230
V+ A L K + +K+ V + KE LR +R + D+
Sbjct: 147 AIPVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDT 206
Query: 231 SFILDANEGY-KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++D + E +L + ++ E + DD G + + +
Sbjct: 207 DMMVDYLYRFTDWYEVARLLNSIEDLE--LYFAEATLQHDDLSGHAKL----VENTRSRI 260
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + ++ + ++ + G
Sbjct: 261 CGAEMSTTRFEAEEWITKGKVHLLQSDYNRCG 292
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 56/293 (19%)
Query: 55 PLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
++ P SR ++ + + + IE ++G VG+ P
Sbjct: 41 DISTPASKWEQYKKSRTSWGINVLGSFLVEIEATDGTVGFATGFGGPPA----------- 89
Query: 111 ASEACEVLK-----ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAV 157
+ + P M S+F GL +V + +++AL D +
Sbjct: 90 CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLP-----IAVISVIDLALWDLL 144
Query: 158 AKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKVG------ 210
K + P++RL GG + + + E + GF K+ +
Sbjct: 145 GKVRNEPVYRLIGGATKE-----RLDFYCTGPEPTA----AKAMGFWGGKVPLPFCPDDG 195
Query: 211 -KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268
+ L++++E LR R AV PD ++D +E+++ ++ +E+ +
Sbjct: 196 HEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLN--INWWEECLSP 253
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
DD +G + I + V E S +K+V+G D+I + +G
Sbjct: 254 DDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLG 303
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 45/294 (15%), Positives = 91/294 (30%), Gaps = 73/294 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+R+ + G GE A + ++ E P M
Sbjct: 25 VRVWAGDE-HGLGECYPSAP-------AAGIHH--IVMNMEEQLLGEDPRDVERLYEKMR 74
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
++F G + + +E AL D K +P++RL GG
Sbjct: 75 RWNIFTG--G--QAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNA 130
Query: 176 --------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------- 210
S E +A + ++GF +KL V
Sbjct: 131 GTVDAAAHHIEGGLFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISP 190
Query: 211 KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVH 267
+ + + + A+R AV P+ +D + + ++ + + + E+P
Sbjct: 191 REHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFG----LLWLEEPTP 246
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
++ + L V + + A E+ + D +++ D + +AK G
Sbjct: 247 PENLDALAEV----RRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCG 296
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 66/288 (22%)
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVFGVVAGL 136
G G G A + A + + A ++ + PA A+ +
Sbjct: 54 PGLYGLGCATFTQRIYA---VQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWR----- 105
Query: 137 LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELAS 195
G + + ++MAL D K +P++ L GG I + E + A
Sbjct: 106 -NGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSAR 164
Query: 196 KYRKQGFTTLKLKVG-----------------------------------------KNLK 214
++G+ ++ ++G K
Sbjct: 165 AKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAK 224
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ +R + + DA+E P A+ + + L E PV ++ E
Sbjct: 225 SIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQ--LFFLEDPVAPENTEW 282
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
L + + + +A E ++++ K ++ L D I ++ +G
Sbjct: 283 LKML----RQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIG 326
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 70/286 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++ G VGW E TA+++ + + L S +
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPG---VTAVIE--QLGKRLVGASVMEHERFFAEAYCLTR 77
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---------------VSN 174
G + A+E AL+DA AK++++P + L GG
Sbjct: 78 PA------TGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRI 131
Query: 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------ 210
P+ A + R++ F +K +
Sbjct: 132 NHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNV 191
Query: 211 --KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
K L+ L A+R PD +LD N KP+ +++L +L + E
Sbjct: 192 DRKVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFD--LFWVEIDS- 248
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313
+GL +V ++ +++ E+ + + K N DV
Sbjct: 249 -YSPQGLAYV----RNHSPHPISSCETLFGIREFKPFFDANAVDVA 289
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 68/291 (23%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I G G G+A + + + ++ ++ P G+ +
Sbjct: 42 LKIVTDQGIYGIGDATLNGREKS---VVSYLEDYLIPVLIGRDPQQIEDIWQFFYRGAYW 98
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI------ 184
G + AA+++AL D AK +MPL++L GG S I
Sbjct: 99 R------RGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRE-----RILSYTHANG 147
Query: 185 VSPAEAAELASKYRKQGFTTLKLKVG---------------------------------K 211
E K + +G+ ++++ G K
Sbjct: 148 KDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEK 207
Query: 212 NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
L +V A+R PD + D + P EA + + L E V ++
Sbjct: 208 YLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYH--LFWMEDAVPAEN 265
Query: 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + +A E S+ D +++++ D I + G
Sbjct: 266 QESFKLI----RQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 58/286 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + ++ ++ GS +
Sbjct: 43 LKITTEDGITGVGDATLNGRELSV---VSFLQDHMVPSLIGRDAHQIEDIWQFFYRGSYW 99
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + AAV+MAL D K +P+++L GG T +T + +
Sbjct: 100 R------GGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIED 153
Query: 190 AAELASKYRKQGFTTLKLKVG---------------------------------KNLKED 216
A KY+ G+ ++L+ G K L
Sbjct: 154 TIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSV 213
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
++ R + D + D + P EA + + L E V ++ G
Sbjct: 214 PKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYR--LFWLEDSVPAENQAGFR 271
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A E + D K++++ L D + + G
Sbjct: 272 LI----RQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAG 313
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 73/297 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+ +E +G G GE A++ A ++ + +
Sbjct: 23 VEVETEDGLTGLGETFRGAQAVE-----AVLHEQTAPAIIGRAAENITSISSELLNPYVG 77
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-------------- 175
FG +AV++AL D + +PL GG +
Sbjct: 78 FG------SSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFN 131
Query: 176 --------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------- 210
T + +A LA +G+ +K+
Sbjct: 132 TSLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHI 191
Query: 211 --KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQP 265
+LK+ +E R IR AV + + + + A + L Y + E P
Sbjct: 192 SLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYG----VLWVEDP 247
Query: 266 VHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + D+ + + + + + E+ +++ + D + + L G
Sbjct: 248 IAKMDNIPAVADL----RRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCG 300
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 56/286 (19%), Positives = 92/286 (32%), Gaps = 58/286 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++IE G G G+A + + A ++ A ++ P + G+ +
Sbjct: 36 LKIETDQGVYGIGDATLNGRELSV---VAYLQEHVAPCLIGMDPRRIEDIWQYVYRGAYW 92
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G AAV+MAL D AK MPL++L GG S I AE
Sbjct: 93 R------RGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAE 146
Query: 190 AAELASKYRKQGFTTLKLKVG---------------------------------KNLKED 216
E Y G+ ++ + G K L
Sbjct: 147 TVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYV 206
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
++ +R D + D + Y PQEA + + L E ++ E
Sbjct: 207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQ--LFWLEDCTPAENQEAFR 264
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V + +A E ++ D K +++ L D I + G
Sbjct: 265 LV----RQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAG 306
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 46/301 (15%), Positives = 85/301 (28%), Gaps = 82/301 (27%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+ + G G GE V E + P +
Sbjct: 20 VLVHTDEGITGLGETFFGAETVE-----TYVH-----EYIAPRVIGRDPLQIDLLAQDLV 69
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
F +A ++AL D K+ + P+ +L GG S
Sbjct: 70 GYLGFR------SSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAG 123
Query: 176 ------------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------- 210
D A ELA + G T +K+
Sbjct: 124 TEYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKT 183
Query: 211 -------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPV 260
+LK +E IR AV +++ + ++ A+++ + L Y+
Sbjct: 184 RGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQ----TF 239
Query: 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320
E P+ D L ++A E+ S + +++ A V+ + ++
Sbjct: 240 WHEDPIKMDSLSSLTRY----AAVSPAPISASETLGSRWAFRDLLETGAAGVVMLDISWC 295
Query: 321 G 321
G
Sbjct: 296 G 296
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 52/290 (17%), Positives = 97/290 (33%), Gaps = 64/290 (22%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + +++ G+ +
Sbjct: 42 LKITTDSGLTGLGDATLNGRELP---VASYLNDHVCPQLIGRDAHQIEDIWQYFYKGAYW 98
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G S +AV+MAL D AK+ +MPL++L GG S T + S E
Sbjct: 99 R------RGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDE 152
Query: 190 AAELASKYRKQGFTTLKLKVG-----------------------------------KNLK 214
+ +K+R QGF ++++ G K L
Sbjct: 153 VLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLD 212
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDW 271
++ A+R + + D + P EA + + Y E P ++
Sbjct: 213 FTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYR----LFWMEDPTPAENQ 268
Query: 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A E S+ D K++++ L D I + G
Sbjct: 269 ACFRLI----RQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAG 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 70/482 (14%), Positives = 125/482 (25%), Gaps = 178/482 (36%)
Query: 41 TQTFTVDVQRAEN-----RPLNVPLIAPFT---IATSRLDQVENVAIRIELSNGCVGWGE 92
T+ + R N NV + P+ A L +NV I +G +G G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGK 163
Query: 93 APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMA 152
+ A + C K M +F + S +EM
Sbjct: 164 T-WV--------------ALDVCLSYKVQCKMDFK-IFWLNLK-----NCNSPETVLEM- 201
Query: 153 LIDAVAKSVSMPLWRLFGGVSNTITT--DITIPIVSPAEAAE------LASK-YRK---- 199
L +L + T+ D + I + + L SK Y
Sbjct: 202 ------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 200 ----------QGF--------TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYK 241
F TT +V + A + +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTT----------RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 242 PQEAVEVLEKLYEM----------GVTPVLF--------EQPVHRDDWEGLGHVSHIAKD 283
P E +L K + P + D+W+ H+ D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNCD 353
Query: 284 KFGVSVAADESCRSLD--DVKKIVKGNLA----DVINIKLAKVGVLGAL---------EI 328
K ++ + S L+ + +K+ L+ +I +L + +
Sbjct: 354 K--LTTIIESSLNVLEPAEYRKMFD-RLSVFPPSA-HIPTI---LLSLIWFDVIKSDVMV 406
Query: 329 I--EVVRAS--------------GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI---DL 369
+ ++ + S + L + +E A+ H S + + D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSI-VDHYNIPKTFDS 461
Query: 370 DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF---------LHW-------DNIAWGLQ 413
D + P LD Y S + N + D+ AW
Sbjct: 462 DDLI----PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 414 TS 415
S
Sbjct: 518 GS 519
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.93 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.91 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.39 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.23 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.23 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.11 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.1 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.1 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.02 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.95 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.71 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.66 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.53 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.53 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.43 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.69 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.48 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.43 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.28 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.27 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.84 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.47 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 94.85 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.54 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 94.18 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.67 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 93.1 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 92.97 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 92.86 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 92.78 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 92.62 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 92.53 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 92.03 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 91.71 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.59 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 91.39 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.36 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 90.65 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 90.64 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 90.6 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 90.38 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 90.2 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.12 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 90.09 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 89.08 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 88.97 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 88.94 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 88.27 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 87.84 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 87.71 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 86.53 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 86.45 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 86.18 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 86.18 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 85.69 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 85.35 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 85.1 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.88 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 83.83 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 83.65 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 83.57 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 83.46 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 83.12 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 82.27 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 82.04 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 81.79 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 81.77 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 81.32 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 80.83 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 80.74 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 80.7 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 80.45 |
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-79 Score=614.13 Aligned_cols=359 Identities=23% Similarity=0.354 Sum_probs=334.7
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|+|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.+++|+.+.+...+++ +.|.|+|++
T Consensus 1 m~MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G~d 80 (379)
T 3r0u_A 1 MVSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSD 80 (379)
T ss_dssp -CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTTCB
T ss_pred CCCEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcCCC
Confidence 6799999999999999999999999999999999999999999999999998766777776666666665 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 202 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 202 (416)
+.+++.+|+.+.+...++ .+|++||||||||++||.+|+|||+||||.+++|++|++++..+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~A~said~ALwDl~gK~~g~Pv~~LLGg~r~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf 158 (379)
T 3r0u_A 81 LSDYKQTLELAFKKVMFN--SAAKMAIDLAYHDLLAKEQDISVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANF 158 (379)
T ss_dssp GGGHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEBCEEECCCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHcCC
Confidence 999999999998765443 468999999999999999999999999999889999999999999999999999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCceeeecCCCCCCHHHHHHhHH
Q 014886 203 TTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 203 ~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
++||+|+|.++++|+++|++||++ ++++.|++|+|++|++++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 159 ~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l--~~iEeP~~~~d~~~~~~l~~ 236 (379)
T 3r0u_A 159 TAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNV--EIIEQPVKYYDIKAMAEITK 236 (379)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCE--EEEECCSCTTCHHHHHHHHH
T ss_pred CEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCc--EEEECCCCcccHHHHHHHHh
Confidence 999999999999999999999998 6799999999999999999999999999 665 69999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|++
T Consensus 237 ----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 312 (379)
T 3r0u_A 237 ----FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFA 312 (379)
T ss_dssp ----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHH
T ss_pred ----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCCCccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCC-CCCcccccChhhHHhh
Q 014886 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIAWG 411 (416)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~PGlGield~~~l~~~ 411 (416)
++ ||+.++|++++..+.+|++++++.++||++.+|+ +||||||+|++++++.
T Consensus 313 aa-p~~~~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLGveld~~~~~~~ 365 (379)
T 3r0u_A 313 LA-EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFGFNLAENLYFQS 365 (379)
T ss_dssp HH-TTCCCBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTSCCCHHHHTC--
T ss_pred hC-CCCCeeecCchhhhhhccccCCceEECCEEEcCCCCCccceeECHHHHhhh
Confidence 99 9999999999987788999999999999999999 8999999999999863
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-78 Score=608.04 Aligned_cols=360 Identities=27% Similarity=0.443 Sum_probs=339.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+.|.+++|+...+...++.+.|.|+|+++.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~d~~~ 80 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLD 80 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCCChhh
Confidence 89999999999999999999999999999999999999999999999998776777776666666677899999999999
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCcee-eeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI-TTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
++.+|+.|.+...++ .+|++||||||||++||.+|+|||+||||.++++ ++|++++..+++++.+++++++++||++
T Consensus 81 ~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 158 (368)
T 3q45_A 81 IVSNSLLMDAIIYGN--SCIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEI 158 (368)
T ss_dssp HHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeeeeeEEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 999999998876655 4689999999999999999999999999998888 9999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhc
Q 014886 205 LKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283 (416)
Q Consensus 205 ~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~ 283 (416)
||+|+|.++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~---- 232 (368)
T 3q45_A 159 IKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKIRQ---- 232 (368)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCC--SCEECCBCGGGGGGHHHHHH----
T ss_pred EEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCC--CEEECCCChhHHHHHHHHHh----
Confidence 9999999999999999999998 8999999999999999999999999999997 49999999999999999875
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCC
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~ 362 (416)
++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++||++++|
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~p 312 (368)
T 3q45_A 233 ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVALVSK 312 (368)
T ss_dssp TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHTTCT
T ss_pred hCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CCceecCcCCcccccCCCCcceeEeCc-EEEcCCCCCcccccChhhHHhhhc
Q 014886 363 CFKFIDLDTPLLLSEDPVLDGYEVSGA-VYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 363 ~~~~~e~~~p~~~~~d~~~~~~~~~~G-~~~~p~~PGlGield~~~l~~~~~ 413 (416)
|+.++|+++++.+.+|++.+++.++|| ++.+|++||||+++|++++++|..
T Consensus 313 ~~~~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~~d~~~l~~~~~ 364 (368)
T 3q45_A 313 TICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGYQKDYLSGLEK 364 (368)
T ss_dssp TEEEECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEEECTTTGGGSEE
T ss_pred CCceeccccHHhhhhccccCCceecCCeEEEcCCCCccceeeCHHHHHhhhh
Confidence 999999999887788998888899998 999999999999999999999875
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-79 Score=612.95 Aligned_cols=361 Identities=40% Similarity=0.620 Sum_probs=332.3
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.|||++|+++++++|++.||.++.++.+.++.++|+|+|++|++||||+.+.|.+++|+...+...++.+.|.|+|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDAR 83 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGG
T ss_pred CCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999887777787776666667789999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
+++.+|+.+.....++. .+|++|||||||||+||.+|+|||+||||..+++++|++++..+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~~-~~A~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G~~~ 162 (389)
T 3s5s_A 84 AWRAVARALREASGGGA-GAARCAIETAILDALTKRAGMPLWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRA 162 (389)
T ss_dssp GHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTTCBHHHHTTCSCSEEECCEEECSSCSHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEeeecCCCHHHHHHHHHHHHHcCCCe
Confidence 99999999987655443 26899999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCC-hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 205 LKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 205 ~KiKvG~~-~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
||+|+|.+ +++|+++|++||++.|+..|+||+|++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 163 iKlKvg~~~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 238 (389)
T 3s5s_A 163 LKVKVGGRLAASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADV--ALLEQPVPRDDWDGMKEVTR-- 238 (389)
T ss_dssp EEEECCGGGTTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEecCCChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCcccHHHHHHHHh--
Confidence 99999965 8899999999999988899999999999999999999999 78875 69999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+|++++++||+++
T Consensus 239 --~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 315 (389)
T 3s5s_A 239 --RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTASACFAAG 315 (389)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999 9 999999999999999999999999999999999999999
Q ss_pred CCCCceecCcCCcccccCCCCcceeEeCcEEEcCC-CCCcccccChhhHHhhhc
Q 014886 361 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~PGlGield~~~l~~~~~ 413 (416)
+||+.++|++++..+.+|++.+++.++||++.+|+ +|||||++|++++++|..
T Consensus 316 ~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~~~~~~~ 369 (389)
T 3s5s_A 316 LGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHGVTPQRRSPAAGAE 369 (389)
T ss_dssp HCCEEEECCCGGGGBSCCCEECSCEEETTEEECTTCCSBTCCEEC------CCE
T ss_pred CCCCCeeeccchhhhhhccccCCceeECCEEECCCCCCcCCcccCHHHHhhccc
Confidence 99999999999888888999888999999999999 999999999999999864
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-78 Score=612.30 Aligned_cols=354 Identities=36% Similarity=0.585 Sum_probs=316.5
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++++|++.||.++.++.+.++.++|||+|++|++||||+.+.|.+++|+...+...++.+.|.|+|+++.+
T Consensus 27 mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G~d~~~ 106 (393)
T 3u9i_A 27 TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVRE 106 (393)
T ss_dssp TBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGGG
T ss_pred cEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcCCCcCC
Confidence 89999999999999999999999999999999999999999999999998877777877766666677899999999999
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEE
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 205 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 205 (416)
++.+|+.|.+...++ ++|++||||||||++||.+|+|||+||||.++++++|++++..+++++.+++++++++||++|
T Consensus 107 ~~~~~~~l~~~~~~~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~Gf~~i 184 (393)
T 3u9i_A 107 WRRIALALPALPGMT--GSARCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTI 184 (393)
T ss_dssp HHHHHHHGGGSTTCC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEECCEEEC---CHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEEecCCCHHHHHHHHHHHHHcCCCeE
Confidence 999999997755443 568999999999999999999999999999889999999999999999999999999999999
Q ss_pred EEecCCC---------hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCceeeecCCCCCCHHHH
Q 014886 206 KLKVGKN---------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGL 274 (416)
Q Consensus 206 KiKvG~~---------~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~ 274 (416)
|+|+|.+ +++|+++|++||++.|++.|+||+|++|++++|++++++| +++++ .|||||++++|++++
T Consensus 185 KlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~ 262 (393)
T 3u9i_A 185 KIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVP--ALFEQPVAKDDEEGL 262 (393)
T ss_dssp EEECC-------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCC--SEEECCSCTTCTTHH
T ss_pred EEEeCCCcccccccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCCCcHHHH
Confidence 9999965 8899999999999988899999999999999999999999 88886 599999999999999
Q ss_pred HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 014886 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 275 ~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a 353 (416)
++|++ ++++||++||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+|++++
T Consensus 263 ~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa 337 (393)
T 3u9i_A 263 RRLTA----TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGGMVESLLAMTV 337 (393)
T ss_dssp HHHHH----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHH
T ss_pred HHHHh----hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHH
Confidence 99975 789999999999999999999999999999999999 8 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCC-CCCcccccChhhH
Q 014886 354 AGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNI 408 (416)
Q Consensus 354 ~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~PGlGield~~~l 408 (416)
++||++++||+.++|+++++.+.+|++.+++.++||++.+|+ +|||||++|+++|
T Consensus 338 ~~hlaaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~l 393 (393)
T 3u9i_A 338 SACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYHGGTIDLTLIEAGHGVTPRSPAL 393 (393)
T ss_dssp HHHHHHHHCCEEEECCCGGGSBSCCCEEESCEEETTEEECTTCCSBTCEEEC----
T ss_pred HHHHHhcCCCCCeecccchhhhhhcccCCCceeECCEEECCCCCCcCCcccCcccC
Confidence 999999999999999999888888999888999999999999 9999999999975
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-77 Score=601.89 Aligned_cols=361 Identities=26% Similarity=0.377 Sum_probs=338.2
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+. |.|++|+.+.+...+++ +.|.|+|++
T Consensus 6 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 85 (383)
T 3i4k_A 6 LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLAPVLIGRA 85 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTHHHHTTSB
T ss_pred CEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhhHHHcCCC
Confidence 999999999999999999999999999999999999999999999999886 56778887766666655 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHc-
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ- 200 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~- 200 (416)
+.+++.+|+.+++...++ ++|++|||||||||+||.+|+|||+||||+ +++|++|++++..+++++.+++++++++
T Consensus 86 ~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~~ 163 (383)
T 3i4k_A 86 VSELAGIMADLERVVARA--RYAKAAVDVAMHDAWARSLNVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEF 163 (383)
T ss_dssp GGGHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCSCSEEEBCEEECSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeEEEeEEeeCCCHHHHHHHHHHHHHhc
Confidence 999999999998876665 468999999999999999999999999996 6789999999999999999999999887
Q ss_pred CCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 201 G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 164 G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 241 (383)
T 3i4k_A 164 GNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLREIT 241 (383)
T ss_dssp CCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTC--CEEESCSCTTCHHHHHHHH
T ss_pred CCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHH
Confidence 99999999996 899999999999998 7899999999999999999999999999997 4999999999999999997
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||++++.+++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|++++++|+
T Consensus 242 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hl 317 (383)
T 3i4k_A 242 R----RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQF 317 (383)
T ss_dssp H----HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECCSCCCHHHHHHHHHH
T ss_pred h----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCCCCccHHHHHHHHHH
Confidence 5 67999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
++++||+.+ +|+++++.+.+|++.+++.++||++.+|++||||+++|++++++|.++
T Consensus 318 aaa~p~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 375 (383)
T 3i4k_A 318 AASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPGLGVDVDMDKVNFYTRK 375 (383)
T ss_dssp HHHCTTEEEEECCCHHHHBSSCSSSSCCCEETTEEECCCSSBTSCCCCHHHHHHHBC-
T ss_pred HHcCCCCCccccccchhhhhhhccCCCceeeCCEEECCCCCCcceeeCHHHHHHhhhc
Confidence 999999998 899988777889999999999999999999999999999999999875
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=602.12 Aligned_cols=363 Identities=22% Similarity=0.326 Sum_probs=334.9
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g 120 (416)
|.|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+ .|++|+.+.+...+++ +.|.|+|
T Consensus 4 m~~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~liG 83 (382)
T 3dgb_A 4 HASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIG 83 (382)
T ss_dssp CTTBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTT
T ss_pred hhCeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHHHHHHhcC
Confidence 456699999999999999999999999999999999999999999999999864 4667777666666665 7899999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.|.+.+.|+ ++|++||||||||++||.+|+|||+||||+ +++|++|++++..+++++.++++++++
T Consensus 84 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~ 161 (382)
T 3dgb_A 84 QDASNINAAMLRLEQSIRGN--TFAKSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLD 161 (382)
T ss_dssp SBTTCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeeeEEEEecCCChHHHHHHHHHHHH
Confidence 99999999999998877665 468999999999999999999999999997 568999999888888888888888877
Q ss_pred -cCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHH
Q 014886 200 -QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (416)
Q Consensus 200 -~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (416)
+||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++
T Consensus 162 ~~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 239 (382)
T 3dgb_A 162 LRRHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVR 239 (382)
T ss_dssp TTSCSEEEEECCSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTC--CCEECCBCTTCHHHHHH
T ss_pred hCCCCEEEEeeCCCCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCc--CeeeCCCCccCHHHHHH
Confidence 699999999995 579999999999998 7899999999999999999999999999997 59999999999999999
Q ss_pred hHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 014886 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (416)
Q Consensus 277 l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~ 355 (416)
|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++
T Consensus 240 l~~----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~ 315 (382)
T 3dgb_A 240 LNA----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASA 315 (382)
T ss_dssp HHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHH
T ss_pred HHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecCCCccHHHHHHHH
Confidence 975 68999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 356 HLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 356 hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
||++++||+.+ +|+++|+.+.+|++.+++.++||++.+|++||||+++|++++++|..+
T Consensus 316 hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 375 (382)
T 3dgb_A 316 HAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPGLGLSLDEERLAFFRRE 375 (382)
T ss_dssp HHHTTSSCCTTCBCCCHHHHBSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHHHHHBC-
T ss_pred HHHHcCCCCcceeeccchhhhhhcccCCCceeECCEEECCCCCCcCcccCHHHHHHhhhc
Confidence 99999999887 788888777889999999999999999999999999999999999865
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-77 Score=599.36 Aligned_cols=361 Identities=25% Similarity=0.349 Sum_probs=320.6
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKES 121 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (416)
.|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+ .|++|+.+.+...+++ +.|.|+|+
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l~G~ 83 (381)
T 3fcp_A 4 TATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLLKGQ 83 (381)
T ss_dssp CCBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred CcEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999999999999999999998864 4667777666666655 78999999
Q ss_pred CCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH-
Q 014886 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK- 199 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~- 199 (416)
++.+++.+|+.|.+.+.|+ ++|++||||||||++||.+|+|||+||||+ +++|++|++++..+++++.++++++++
T Consensus 84 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~ 161 (381)
T 3fcp_A 84 PADNLNALTARMNGAIKGN--TFAKSAIETALLDAQGKALGLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAE 161 (381)
T ss_dssp BSSCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeEEEecCCChHHHHHHHHHHHHh
Confidence 9999999999998877665 468999999999999999999999999997 578999999888889988888888877
Q ss_pred cCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 200 ~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
+||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|
T Consensus 162 ~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l 239 (381)
T 3fcp_A 162 GRHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRL 239 (381)
T ss_dssp ---CEEEEECCSSCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC--SEEECCBCTTCHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCc--cceeCCCCcccHHHHHHH
Confidence 699999999995 579999999999998 7889999999999999999999999999997 599999999999999999
Q ss_pred HHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|
T Consensus 240 ~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 315 (381)
T 3fcp_A 240 SQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLH 315 (381)
T ss_dssp HH----HSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCCCCccHHHHHHHHH
Confidence 75 68999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 357 LSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 357 laaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++++| +.+ +|+++++.+.+|++.+++.++||++.+|++||||+++|++++++|...
T Consensus 316 laaa~~-~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 373 (381)
T 3fcp_A 316 AWSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLGVELDEDKLHFYTRQ 373 (381)
T ss_dssp HHTTSC-CTTCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTSCCBCHHHHHHHBCC
T ss_pred HHHhCC-CccccccccchhhhhhccCCCceeeCCEEECCCCCCcCcccCHHHHHHhhhh
Confidence 999999 776 788888777889999899999999999999999999999999999764
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-77 Score=597.58 Aligned_cols=362 Identities=21% Similarity=0.281 Sum_probs=323.8
Q ss_pred eEEEeEEEEEEEEeccccceeecCcee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~-~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
+|||++|+++++++|++.||+++.+++ +.++.++|||+|++|++||||+.+.+.++ |+...+...+++ +.|.|+|++
T Consensus 7 ~mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~l~G~d 85 (385)
T 3i6e_A 7 EQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFT-GTPEASYAALDRYLRPLVIGRR 85 (385)
T ss_dssp CSBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCTTTT-CCHHHHHHHHHHTTHHHHTTCB
T ss_pred hcEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCCCcC-CCHHHHHHHHHHHHHHHHCCCC
Confidence 489999999999999999999999998 88899999999999999999999887765 666666666676 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+|+.+.+.+.++ ++|++||||||||++||.+|+|||+||||+ +++|++|++++..+++++.+++++++++|
T Consensus 86 ~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~G 163 (385)
T 3i6e_A 86 VGDRVAIMDEAARAVAHC--TEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADG 163 (385)
T ss_dssp GGGHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECCSSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCcccCCceEEEEEcCCCCHHHHHHHHHHHHHcC
Confidence 999999999998876665 468999999999999999999999999997 57899999998889999999999999999
Q ss_pred CCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 202 FTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 202 ~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
|++||+|+|. ++++|+++|++||++.+++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 164 ~~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~- 240 (385)
T 3i6e_A 164 VGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARLRG- 240 (385)
T ss_dssp CCEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHHHT-
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHH-
Confidence 9999999995 6899999999999977999999999999999999999999999997 49999999999999999874
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaa 359 (416)
++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++
T Consensus 241 ---~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaa 317 (385)
T 3i6e_A 241 ---LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIA 317 (385)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCCCCccHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCce-ecCcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 360 GLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 360 a~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
++|++.+ +|++++ ..+.+|++.+++.++||++.+|++||||+++|++++++|....
T Consensus 318 a~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 375 (385)
T 3i6e_A 318 ATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRR 375 (385)
T ss_dssp TCTTEEEEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSCBCHHHHHHHEEEC
T ss_pred hCCCCccchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCceECHHHHHhhhccc
Confidence 9999987 888876 5567889888899999999999999999999999999997653
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-77 Score=594.19 Aligned_cols=351 Identities=36% Similarity=0.599 Sum_probs=323.4
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.|||++|+++++++|++.||.++.++.+.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.|+|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVR 83 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence 48999999999999999999999999999999999999999999999999988888888777766677789999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
+++.+|+.+.+...++ .+|++||||||||++||..|+|||+||||.++++++|++++..+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~--~~a~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 161 (365)
T 3ik4_A 84 GWRKLAAMLDHAEHEA--AAARCGLEMAMLDALTRHYHMPLHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKS 161 (365)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEBCEEECCSCHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998765544 46899999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCC-hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 205 LKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 205 ~KiKvG~~-~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
||+|+|.+ +++|+++|++||++.|+..|++|+|++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 162 iK~Kvg~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 237 (365)
T 3ik4_A 162 IKVKTAGVDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPM--VLFEQPLPREDWAGMAQVTA-- 237 (365)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCc--eEEECCCCcccHHHHHHHHh--
Confidence 99999965 9999999999999988899999999999999999999999 88875 69999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+|++++++||+++
T Consensus 238 --~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 314 (365)
T 3ik4_A 238 --QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAG 314 (365)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999 8 999999999999999999999999999999999999999
Q ss_pred CCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 361 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
+||+.++|++++..+.+|++.+++.++||++.+|++||||+|+.
T Consensus 315 ~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~~ 358 (365)
T 3ik4_A 315 NGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLE 358 (365)
T ss_dssp HCCEEEECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCEEEC
T ss_pred CCCCCeeccccchhhhhcccCCCceeECCEEECCCCCccCCCCC
Confidence 99999999999988889999889999999999999999999975
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-77 Score=594.57 Aligned_cols=360 Identities=21% Similarity=0.331 Sum_probs=324.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (416)
|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+.|++++|+...+...++ .+.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d~~ 80 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIGLTLT 80 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 8999999999999999999999999999999999999999999999999888888888776666666 588999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHc-CCC
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ-GFT 203 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 203 (416)
+++.+|+.+.+. .++ .+|++||||||||++||.+|+|||+||||.+++|++|++++..+++++.+++++++++ ||+
T Consensus 81 ~~~~~~~~l~~~-~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~ 157 (367)
T 3dg3_A 81 EREVAHTRMART-VGN--PTAKAAIDMAMWDALGQSLRLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGIN 157 (367)
T ss_dssp CHHHHHHHHTTS-CSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEEEEEEESSCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhc-cCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999765 333 4689999999999999999999999999987899999999999999999999999999 999
Q ss_pred EEEEecCCChh-HHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 204 TLKLKVGKNLK-EDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 204 ~~KiKvG~~~~-~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
+||+|+|.++. +|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 158 ~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 233 (367)
T 3dg3_A 158 TFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRLVG-- 233 (367)
T ss_dssp EEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCC--SCEESCSCTTSHHHHHHHHH--
T ss_pred EEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CEEECCCCcccHHHHHHHHH--
Confidence 99999998777 999999999998 7999999999999999999999999999997 49999999999999999875
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
++++||++||++++..++.++++.+++|++|+|++++|++++++++++|+++|+++++|+|++|+|++++++||++++
T Consensus 234 --~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Git~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 311 (367)
T 3dg3_A 234 --QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAF 311 (367)
T ss_dssp --HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTTHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred --hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhHHHHHHHHHHHHHcCCeEEECCcCCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-Cc-eecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 362 GC-FK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 362 ~~-~~-~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+| +. .+++++++.+.+|++.+++.++||++.+|++||||+++|++++++|..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 366 (367)
T 3dg3_A 312 ERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGIEIDPDKLAHYRTD 366 (367)
T ss_dssp HHHHTSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSCCBCHHHHHHHBCC
T ss_pred CcccCcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCceECHHHHHHhhcC
Confidence 84 23 3678887777889999999999999999999999999999999999875
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-77 Score=596.90 Aligned_cols=361 Identities=22% Similarity=0.321 Sum_probs=322.5
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeee-EEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVE-NVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~-~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
.|||++|+++++++|++.||.++.++.+.++ .++|+|+|++|++||||+.+.+.++ |+...+...+++ +.|.|+|++
T Consensus 5 ~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~liG~d 83 (377)
T 3my9_A 5 DSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFT-GTPEAAFSALDIYLRPLILGAP 83 (377)
T ss_dssp CCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC------CHHHHHHHHHTTTHHHHTTCB
T ss_pred cCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCCcC-CCHHHHHHHHHHHHHHHhCCCC
Confidence 4899999999999999999999999998888 9999999999999999999887665 666666666666 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+|+.|.+.+.++ .+|++||||||||++||.+|+|||+||||. +++|++|++++..+++++.+++++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~A~said~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~G 161 (377)
T 3my9_A 84 IKRVRELMARMDKMLVGH--GEAKAAVEMALLDILGKATGLSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAG 161 (377)
T ss_dssp TTCHHHHHHHHHHHSCSC--HHHHHHHHHHHHHHHHHHHTCBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEecCCCCHHHHHHHHHHHHHcC
Confidence 999999999998877665 468999999999999999999999999996 57899999998889999999999999999
Q ss_pred CCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|++||+|+|. ++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 162 ~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~ 239 (377)
T 3my9_A 162 HTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP--TFIEQPVPRRHLDAMAGFAA 239 (377)
T ss_dssp CCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHHHH
T ss_pred CCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--CEEECCCCccCHHHHHHHHH
Confidence 9999999995 689999999999998 7999999999999999999999999999997 49999999999999999875
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|++++++|++
T Consensus 240 ----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hla 315 (377)
T 3my9_A 240 ----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQLI 315 (377)
T ss_dssp ----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCEECCSHHHHHHHHHHH
T ss_pred ----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCCCCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-ecCcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 359 AGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 359 aa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++||+.+ +|++++ ..+.+|++.+++.++||++.+|++||||+++|++++++|...
T Consensus 316 aa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 373 (377)
T 3my9_A 316 AATPGISLGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGISISEASLRGNAKI 373 (377)
T ss_dssp HTCTTBCSCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSCCCCHHHHHHHSEE
T ss_pred HhCCCCccceeecCchhhhhhhccCCCceeECCEEECCCCCCCCcccCHHHHHHhhhh
Confidence 99999887 888887 556788998889999999999999999999999999999764
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-77 Score=594.53 Aligned_cols=352 Identities=26% Similarity=0.374 Sum_probs=320.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (416)
|||++|+++++++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+.+++|+.+.+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G~~~~ 80 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDIR 80 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTTCBGG
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 89999999999999999999999999999999999999999999999998777777776666655654 78999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
+++.+|+.+.+.+.++ ++|++||||||||++||..|+|||+||||.++++++|++++..+++++.+++++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 158 (356)
T 3ro6_B 81 TLPRLCRELAERLPAA--PAARAALDMALHDLVAQCLGLPLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRV 158 (356)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHTSBHHHHTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998766554 46899999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhc
Q 014886 205 LKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283 (416)
Q Consensus 205 ~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~ 283 (416)
||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~K~G~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~---- 232 (356)
T 3ro6_B 159 LKVKLCGDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI--EFIEQPFPAGRTDWLRALPK---- 232 (356)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CCEECCSCTTCHHHHHTSCH----
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCC--CEEECCCCCCcHHHHHHHHh----
Confidence 9999999999999999999998 8999999999999999999999999999997 49999999999999999875
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcC-CCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGN-LADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~-a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
++++||++||++++..++.++++.+ ++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++||++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 312 (356)
T 3ro6_B 233 AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALAC 312 (356)
T ss_dssp HHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHhcC
Confidence 6789999999999999999999999 9999999999997 9999999999999999999999999999999999999999
Q ss_pred CCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChh
Q 014886 362 GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (416)
Q Consensus 362 ~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~ 406 (416)
||+.++|+++++.+.+|++.+++.++||++.+|++||||+ +|+|
T Consensus 313 p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv-~d~~ 356 (356)
T 3ro6_B 313 PATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL-VYPD 356 (356)
T ss_dssp TTEEEECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-EC--
T ss_pred CCCCeEecccchhhhhccccCCceeECCEEECCCCCeeee-cCCC
Confidence 9999999999888888999888999999999999999999 9986
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-76 Score=589.41 Aligned_cols=361 Identities=24% Similarity=0.360 Sum_probs=328.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++.+++|+++||+++.++.+.++.++|||+| ||++||||+.+. |.+++|+.+.+...+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~liG~d 79 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999998 599999999875 45777877766665655 689999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeecCCC-HHHHHHHHHHHHHc
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVS-PAEAAELASKYRKQ 200 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 200 (416)
+.+++.+|+.+.+...++ ++|++||||||||++||.+|+|||+||||.. +.+++|.++...+ ++++.+.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~said~AlwDl~gK~~g~Pl~~lLGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 2chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTCCSCSEEEBEEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHhcCCccccccCCccccccceeeeeccCchhhhHHHHHHHHhhc
Confidence 999999999998877665 4589999999999999999999999999975 4677777776655 45567777788889
Q ss_pred CCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 201 GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 201 G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
||+++|+|+| .++++|+++++++|+. ++++.||+|+|++|++++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 g~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp SCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTC--CEEECCSCSSCHHHHHHHH
T ss_pred ccceeecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCC--ceecCCCChhhhhhhhHHh
Confidence 9999999999 5889999999999997 8999999999999999999999999999997 5999999999999999997
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|++++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~~~~i~~aa~~hl 311 (370)
T 2chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCHHHHHHHHHH
T ss_pred h----hccCCccCCccCCCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCcccHHHHHHHHHH
Confidence 5 78999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
++++||+.+ +++++++.+.++++.+++.++||++.+|++||||||+|+|+|++|.+-|
T Consensus 312 aa~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~y~r~s 370 (370)
T 2chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVRQYARVS 370 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHHHHHHCCCC
T ss_pred HHhCCCCCcccccCchhhhhhhccCCCceEECCEEECCCCCCCCceECHHHHHHhhccC
Confidence 999999876 4567777777888888999999999999999999999999999998643
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-75 Score=588.90 Aligned_cols=358 Identities=18% Similarity=0.292 Sum_probs=326.7
Q ss_pred eeEEEeEEEEEEEEeccccc-eeecCc-eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAP-FTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~p-f~~a~~-~~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
|+|||++|+++++++|++.| |+++.+ +.+.++.++|||+|++|++||||+.+. +.|++|+...+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l~G 80 (386)
T 3fv9_G 1 MSLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILG 80 (386)
T ss_dssp --CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHhCC
Confidence 78999999999999999999 999955 888899999999999999999999886 567777766666666778999999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.|.+.+.|+ ++|++|||||||||+||.+|+|||+||||. ++++++|++++..+++++.++++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~~~~v~~y~s~~~~~~e~~~~~a~~~~~ 158 (386)
T 3fv9_G 81 MDPRQHDRIWDRMRDTLKGH--RDARAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRA 158 (386)
T ss_dssp SCTTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCBCEEEEECSCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEecCCCCHHHHHHHHHHHHH
Confidence 99999999999998777665 468999999999999999999999999997 568999999999999999999999999
Q ss_pred cCCCEEEEecC-----CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHH
Q 014886 200 QGFTTLKLKVG-----KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWE 272 (416)
Q Consensus 200 ~G~~~~KiKvG-----~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~ 272 (416)
+||++||+|+| .++++|+++|++||++ |+++.|++|+|++|++++|+++++.| ++++ + |||||++ |++
T Consensus 159 ~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~--i-~iEeP~~--~~~ 233 (386)
T 3fv9_G 159 QGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLD--I-VLEAPCA--SWA 233 (386)
T ss_dssp TTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCC--C-EEECCCS--SHH
T ss_pred CCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--c-EEecCCC--CHH
Confidence 99999999999 5689999999999998 79999999999999999999999999 7776 4 9999998 799
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+|++
T Consensus 234 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~ 309 (386)
T 3fv9_G 234 ETKSLRA----RCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISF 309 (386)
T ss_dssp HHHHHHT----TCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred HHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCCCCCHHHH
Confidence 9998874 78999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCc-eecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 352 GFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 352 ~a~~hlaaa~~~~~-~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
++++||+++++|+. ..+++++..+.+|++.+++.++||++.+|++||||+++|+++|++..
T Consensus 310 aa~~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~ 371 (386)
T 3fv9_G 310 AAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGLGLRVNRDALGTPV 371 (386)
T ss_dssp HHHHHHHHTSCTTTEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBTCCEECGGGGCSCS
T ss_pred HHHHHHHHhCCCcccccccccccchhccccCCCceEECCEEECCCCCCCCceeCHHHHhchh
Confidence 99999999999954 35667766667788888889999999999999999999999997754
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-75 Score=585.31 Aligned_cols=357 Identities=20% Similarity=0.340 Sum_probs=324.1
Q ss_pred eeEEEeEEEEEEEEeccccceeecCc--eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~--~~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
|+|||++|+++++++|++.||+++.+ +.+.++.++|+|+|++|++||||+.+. +.|+.++...+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G 80 (378)
T 3eez_A 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLG 80 (378)
T ss_dssp --CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999987 678899999999999999999999886 667666666666666778999999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.+.+.+.|+ .+|++|||||||||+||.+|+|||+||||. ++++++|.+++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~r~~v~~~~~~~~~~~e~~~~~a~~~~~ 158 (378)
T 3eez_A 81 LDPRRLLDVERAMDIALPGH--LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQ 158 (378)
T ss_dssp SCTTCHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCeEEEEEEecCCCHHHHHHHHHHHHh
Confidence 99999999999998777665 468999999999999999999999999997 578999999999999999999999999
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 200 ~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
+||++||+|+|.++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|++++ + |||||++ |++++++|+
T Consensus 159 ~G~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iEqP~~--~~~~~~~l~ 233 (378)
T 3eez_A 159 RGYVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH--V-MFEQPGE--TLDDIAAIR 233 (378)
T ss_dssp TTCCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGT--C-CEECCSS--SHHHHHHTG
T ss_pred CCCCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCC--e-EEecCCC--CHHHHHHHH
Confidence 999999999999999999999999998 799999999999999999999999999997 4 9999998 799999887
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+|++++++||
T Consensus 234 ~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~es~i~~aa~~hl 309 (378)
T 3eez_A 234 P----LHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMATGGSVLADAEALHL 309 (378)
T ss_dssp G----GCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHHHHH
T ss_pred h----hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 4 78999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCc-eecCcCCcccccCCCCc-ceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 358 SAGLGCFK-FIDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 358 aaa~~~~~-~~e~~~p~~~~~d~~~~-~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
+++++|.. +.+++++..+.+|++.+ ++.++||++.+|++||||+++|++++++-
T Consensus 310 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~ 365 (378)
T 3eez_A 310 AATIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALGDP 365 (378)
T ss_dssp HHTSCGGGBCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCCCTTSSCSC
T ss_pred HHhCCCccceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCcccCHHHHhCh
Confidence 99999843 45677777777888877 78999999999999999999999999763
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-76 Score=588.60 Aligned_cols=360 Identities=24% Similarity=0.350 Sum_probs=331.5
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||+++.++.+.++.++|||+ ++|++||||+.+.+ .|++|+.+.+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 79 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999 99999999998764 4777777666666654 689999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH-c
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK-Q 200 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (416)
+.+++.+|+.|.+.+.|+ .+|++||||||||++||.+|+|||+||||+ +++|++|++++..+++++.++++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 1chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBEEEECSSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeEEEEecCCCcHHHHHHHHHHHHHC
Confidence 999999999998877665 468999999999999999999999999997 578999999887788777666777766 8
Q ss_pred CCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 201 G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp CCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTE--EEEECCSCTTCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHH
Confidence 99999999995 789999999999998 6789999999999999999999999999986 6999999999999999987
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|++++++|+
T Consensus 236 ~----~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECCSCCTTHHHHHHHHH
T ss_pred h----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecCCCccHHHHHHHHHH
Confidence 5 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
++++||+.+ +|+++|+.+.+|++.+++.++||++.+|++||||+++|++++++|.+-
T Consensus 312 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 369 (370)
T 1chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVRQYARV 369 (370)
T ss_dssp HTTSSCCTTCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHHHHTCSC
T ss_pred HHhCCCCccchhcccchhhhhcccCCCceeECCEEECCCCCcCCcccCHHHHHhhhcC
Confidence 999999877 688888777889999899999999999999999999999999999753
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-75 Score=584.56 Aligned_cols=361 Identities=19% Similarity=0.259 Sum_probs=325.6
Q ss_pred eeEEEeEEEEEEEEecccc--ceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC
Q 014886 44 FTVDVQRAENRPLNVPLIA--PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~--pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
|+|||++|+++++++|+++ ||.++.++++.++.++|||+|++|++||||+.. ++++.++...+ ++++.|.|+|+
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~~~~~~~~~~~---i~~l~p~l~G~ 76 (389)
T 3ozy_A 1 MSLKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-PYDLAVLKRAI---EDVIGPQLIGE 76 (389)
T ss_dssp -CCCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-SSCHHHHHHHH---HHTTHHHHTTS
T ss_pred CCCEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-CCCchHHHHHH---HHHHHHHHcCC
Confidence 6799999999999999999 999999999999999999999999999999983 33333443333 45588999999
Q ss_pred CCCCHHHHHHHHHhh--CC----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Cce-eeeeEee-c-CCCHHHHH
Q 014886 122 PAMALGSVFGVVAGL--LP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNT-ITTDITI-P-IVSPAEAA 191 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~--~~----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~-v~~~~~~-~-~~~~~~~~ 191 (416)
++.+++.+|+.|.+. ++ +....+|++|||||||||+||.+|+|||+||||. +++ +++|.++ + ..+++++.
T Consensus 77 d~~~~~~~~~~l~~~~~~~~~g~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~r~~~v~~y~~~~~~~~~~e~~~ 156 (389)
T 3ozy_A 77 DPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLTPDQAA 156 (389)
T ss_dssp CTTCHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCSSTTCEEEEEEEECSSCCHHHHH
T ss_pred CcchHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcccCCceeeEEecCCCCCCHHHHH
Confidence 999999999998764 22 1224578999999999999999999999999998 678 9999988 7 78999999
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (416)
+.+++++++||++||+|+|.++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|
T Consensus 157 ~~a~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d 234 (389)
T 3ozy_A 157 DELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGC--YWFEEPLSIDD 234 (389)
T ss_dssp HHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SEEESCSCTTC
T ss_pred HHHHHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCC--CEEECCCCccc
Confidence 99999999999999999999999999999999998 8999999999999999999999999999997 49999999999
Q ss_pred HHHHHHhH-HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 271 WEGLGHVS-HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 271 ~~~~~~l~-~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
++++++|+ + ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++
T Consensus 235 ~~~~~~l~~~----~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~ 309 (389)
T 3ozy_A 235 IEGHRILRAQ----GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTF-NDI 309 (389)
T ss_dssp HHHHHHHHTT----CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCCCT-TSH
T ss_pred HHHHHHHHhc----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-CcH
Confidence 99999986 4 78999999999999999999999999999999999997 99999999999999999999976 899
Q ss_pred HHHHHHHHHHccCCCCceecCcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 349 LAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 349 ig~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
|++++++||++++||+.++|++.. ..+.++++.++++++||++.+|++||||+++|++++++|....
T Consensus 310 i~~aa~~hlaaa~~~~~~~e~d~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 377 (389)
T 3ozy_A 310 ITVAANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFVAAHAWKG 377 (389)
T ss_dssp HHHHHHHHHHHHCCSCCCEEEECSSCGGGTTSBSCCCCCBTTEECCCCSSBTCSCBCHHHHHHTBCCS
T ss_pred HHHHHHHHHHHhCCCCeeEEecCccchhhHhhccCCceeECCEEECCCCCcCCcccCHHHHHhccCCC
Confidence 999999999999999988887542 2245677788889999999999999999999999999998754
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-74 Score=580.16 Aligned_cols=358 Identities=19% Similarity=0.277 Sum_probs=308.8
Q ss_pred eeEEEeEEEEEEEEecc-ccceeecCceeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhCC
Q 014886 44 FTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl-~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
..|||++|+++++++|+ +.||.++.++.+.++.++|+|+|++|++||||+.+. |.|+.++...+...++++.|.|+|+
T Consensus 21 ~~MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~ 100 (391)
T 4e8g_A 21 QSMKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIGA 100 (391)
T ss_dssp --CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGTTC
T ss_pred cCCEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHCCC
Confidence 55999999999999999 999999999999999999999999999999999887 6676666655555667789999999
Q ss_pred CCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHc
Q 014886 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (416)
++.+++.+|+.|.+.+.|+ ++|++|||||||||+||.+|+|||+||||. +++|++|++++..+++++.+++++++++
T Consensus 101 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~e~~~~~a~~~~~~ 178 (391)
T 4e8g_A 101 NPLQPLVLRRRMDGLLCGH--NYAKAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAE 178 (391)
T ss_dssp CTTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEECCEEECSCCHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCChHHHhcCCCCCCcEEEeEEcCCCCHHHHHHHHHHHHHc
Confidence 9999999999998766665 468999999999999999999999999997 5689999999999999999999999999
Q ss_pred CCCEEEEecCC-ChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 201 G~~~~KiKvG~-~~~~d~~~v~avr~~-g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
||++||+|+|. ++++|+++|++||++ + +++.|++|+|++|++++|++++++|++++ + |||||+ +|++++++|
T Consensus 179 G~~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~--i-~iEeP~--~~~~~~~~l 253 (391)
T 4e8g_A 179 GFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP--F-VLEQPC--NTLEEIAAI 253 (391)
T ss_dssp TCSEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSC--E-EEESCS--SSHHHHHHH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcC--e-EEecCC--ccHHHHHHH
Confidence 99999999996 899999999999997 7 99999999999999999999999999997 4 999996 479999998
Q ss_pred HHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|
T Consensus 254 ~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 329 (391)
T 4e8g_A 254 RG----RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAACTH 329 (391)
T ss_dssp GG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSSCSHHHHHHHHH
T ss_pred Hh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCCcCCCHHHHHHHHH
Confidence 74 78999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHccCCCCceecCc-CCcccccCCCCcc-eeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 357 LSAGLGCFKFIDLD-TPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 357 laaa~~~~~~~e~~-~p~~~~~d~~~~~-~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
|++++||+.+.+.. ....+..++...+ +.++||++.+|++|||||++|++++++..
T Consensus 330 laaa~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve~d~~~l~~p~ 387 (391)
T 4e8g_A 330 IGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGITPDESLFGPPV 387 (391)
T ss_dssp HHTTSCGGGEEECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCCCCGGGTCSCS
T ss_pred HHHhCCCccccccccchhhhhhhccccCCceEECCEEECCCCCcCCCccCHHHHhcch
Confidence 99999997665432 2222334554444 77999999999999999999999998754
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-75 Score=577.41 Aligned_cols=345 Identities=32% Similarity=0.466 Sum_probs=325.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHH---HHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC---EVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~---~~l~g~~ 122 (416)
|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+...+...++.+. |.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l~G~d 80 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFN 80 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTCCTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccccCCC
Confidence 8999999999999999999999999999999999999999999999999888778887766666666677 9999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 202 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 202 (416)
+.+++.+|+.|. .++ .+|++||||||||++||.+|+|||+||||.++++++|++++..+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~l~---~~~--~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~ 155 (354)
T 3jva_A 81 IEKIHEVMDKIS---AFA--PAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGF 155 (354)
T ss_dssp HHHHHHHHHHHC---SSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHh---ccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhhccCCeeeeeEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999999999986 233 468999999999999999999999999998789999999999999999999999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 203 TTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 203 ~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
++||+|+|.++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 156 ~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 231 (354)
T 3jva_A 156 DTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYVTS-- 231 (354)
T ss_dssp SEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHHH--
Confidence 999999998889999999999998 8999999999999999999999999999986 69999999999999999875
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSA 359 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaa 359 (416)
++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++ ||++++++++||++
T Consensus 232 --~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaa 309 (354)
T 3jva_A 232 --QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAA 309 (354)
T ss_dssp --HCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999997 999999999999999999999999 99999999999999
Q ss_pred cCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCC-CCccc
Q 014886 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGG 401 (416)
Q Consensus 360 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~-PGlGi 401 (416)
++||+.++|++++..+.+|++.+++.++||++.+|++ |||||
T Consensus 310 a~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGv 352 (354)
T 3jva_A 310 AQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGI 352 (354)
T ss_dssp HCTTEEEECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBTCB
T ss_pred cCCCCCcccccchhhhhhccccCCceEECCEEEcCCCCCCCCC
Confidence 9999999999998888889999899999999999999 99998
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-74 Score=578.17 Aligned_cols=351 Identities=19% Similarity=0.259 Sum_probs=322.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC---CccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---PHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~---~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
|||++|+++++++|++.||.+ +.++|||+|++|++||||+.+. |.+++|+. .+ .+.+.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~--------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~--~i--~~~l~p~liG~d 68 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH--DL--KQGLLSILLGQN 68 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE--------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH--HH--HHHHHHHHTTCC
T ss_pred CEEEEEEEEEEecccCCCccc--------ceEEEEEEECCCCEEEeccccccCCCccchhHH--HH--HHHHHHHhCCCC
Confidence 899999999999999999976 6899999999999999999875 56777765 22 235789999999
Q ss_pred CCCHHHHHHHHHhhCC-----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec----CCCHHHHHH
Q 014886 123 AMALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP----IVSPAEAAE 192 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~-----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~----~~~~~~~~~ 192 (416)
+.+++.+|+.|.+... +....+|++|||||||||+||.+|+|||+||||+ +++|++|++++ ..+++++.+
T Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~ 148 (391)
T 3gd6_A 69 PFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLD 148 (391)
T ss_dssp TTCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHH
Confidence 9999999999986543 2233578999999999999999999999999995 67899999998 778999999
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC
Q 014886 193 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (416)
++++++++||++||+|+|.++++|+++|++||++ ++++.|+ +|+|++|++++|+++++.|+++++.+.|||||++++|
T Consensus 149 ~a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d 228 (391)
T 3gd6_A 149 VVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRND 228 (391)
T ss_dssp HHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSCTTC
T ss_pred HHHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCChhh
Confidence 9999999999999999999999999999999998 8999999 9999999999999999999999872259999999999
Q ss_pred HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 271 ~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
++++++|++ ++++|| ||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|
T Consensus 229 ~~~~~~l~~----~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i 302 (391)
T 3gd6_A 229 FDGLYQLRL----KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSV 302 (391)
T ss_dssp HHHHHHHHH----HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHH
T ss_pred HHHHHHHHH----HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecCCCccHH
Confidence 999999875 689999 999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCC--CCCcccccChhhHHhhhcc
Q 014886 350 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTN--ARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 350 g~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~--~PGlGield~~~l~~~~~~ 414 (416)
++++++||++++||+.+ +|++++..+.+|++.+++.++||++.+|+ +||||+++|++++++|...
T Consensus 303 ~~aa~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~~PGlGv~~d~~~l~~~~~~ 370 (391)
T 3gd6_A 303 GTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLYAPDRSVKGLGIELDESLLAKYQVP 370 (391)
T ss_dssp HHHHHHHHHTTCSSCCSCBCCCGGGGBSCCSBSSCCCEETTEEECCCTTSSBTSCCBCHHHHHHTBCS
T ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhccccCCceeECCEEEeCCCCCCCCCcccCHHHHHhcccc
Confidence 99999999999999999 99998877778999989999999999999 9999999999999999865
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-74 Score=577.30 Aligned_cols=357 Identities=24% Similarity=0.357 Sum_probs=323.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEecc--CCccCcccHHHHHHHHHH-HHHHHh---
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLK--- 119 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~--- 119 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+ .|.|++|+...+...+++ +.|.|+
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l~~~~ 80 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRFARWL 80 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999985 467888887777666665 789999
Q ss_pred ----CCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCC-HHHHHHHH
Q 014886 120 ----ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS-PAEAAELA 194 (416)
Q Consensus 120 ----g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~-~~~~~~~~ 194 (416)
|+++.+++++++.+. .++|+ ++|++||||||||++||..|+|||+||||.+++|++|++++..+ ++++.+++
T Consensus 81 ~~~~G~~~~~~~~~~~~~~-~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~r~~v~~~~~~~~~~~~e~~~~~~ 157 (388)
T 3qld_A 81 RAASQDQDVDPRTVCEALR-DVRGN--RMSVAAIEMAVWDWYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSV 157 (388)
T ss_dssp TSGGGSSCCCGGGGGGGGT-TCCSC--HHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSEEEBEEEECCCSCHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHH-HccCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEeEEecCCCCHHHHHHHH
Confidence 999999888877663 34554 46899999999999999999999999999888999999998876 99999999
Q ss_pred HHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHH
Q 014886 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274 (416)
Q Consensus 195 ~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~ 274 (416)
++++++||++||+|+|. ++|+++|++||++.|++.|++|+|++|++++|++ ++.|+++++ .|||||++++|++++
T Consensus 158 ~~~~~~G~~~~K~Kv~~--~~d~~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i--~~iEeP~~~~d~~~~ 232 (388)
T 3qld_A 158 DAAVEQGFRRVKLKIAP--GRDRAAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDL--QFIEQPLPEDDWFDL 232 (388)
T ss_dssp HHHHHTTCSEEEEECBT--TBSHHHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCC--cEEECCCCcccHHHH
Confidence 99999999999999984 6899999999998899999999999999999987 899999987 599999999999999
Q ss_pred HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 014886 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 275 ~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a 353 (416)
++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|++++
T Consensus 233 ~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 308 (388)
T 3qld_A 233 AKLQA----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGGMYETGVGRVH 308 (388)
T ss_dssp HHHHH----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHH
T ss_pred HHHHH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecCccchHHHHHH
Confidence 99975 68999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCcee-cCcC-CcccccCCCCcce-eEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 354 AGHLSAGLGCFKFI-DLDT-PLLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 354 ~~hlaaa~~~~~~~-e~~~-p~~~~~d~~~~~~-~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
++|+++ ++|+.+. +++. ...+.+|++.+++ .++||++.+|++||||+++|++++++|....
T Consensus 309 ~~~laa-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 372 (388)
T 3qld_A 309 GLIAAA-LPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVPQCAGVADWVDRDAVRRFSTAT 372 (388)
T ss_dssp HHHHHT-STTBCSCBSCCCGGGTCSSCSBSSCCCCSBTTEEECCCCSSSGGGBCHHHHHHHEEEE
T ss_pred HHHHHc-CCCCCcccccCcchhhHHhhcccCCCceeECCEEECCCCCcCCceeCHHHHHHhhcce
Confidence 999987 8887764 4543 2345678888878 8999999999999999999999999998653
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-73 Score=569.91 Aligned_cols=355 Identities=20% Similarity=0.289 Sum_probs=311.2
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++.+++||++||+++.+++++++.++|||+|++|++||||+.+.+. ... ...+.+.|.|+|+++.+
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~~~----~~~---~~~~~~~~~liG~d~~~ 73 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPAR----PNA---AVVQAYSGWLIGQDPRQ 73 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSCHH----HHH---HHHHHHHTTTTTSCTTC
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCCcc----hHH---HHHHHHHHHHcCCChHH
Confidence 89999999999999999999999999999999999999999999999975321 111 12345789999999999
Q ss_pred HHHHHHHHHhhCCCC----hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeecCC-----CHHHHHHHHH
Q 014886 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIV-----SPAEAAELAS 195 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~----~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~~~-----~~~~~~~~~~ 195 (416)
++.+|+.+.+..... ....|++||||||||++||.+|+|+|+||||+. +.+++|.+.+.. ++++..++++
T Consensus 74 ~e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 153 (378)
T 4hpn_A 74 TEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGSFKRDNVDRVSDNASEMA 153 (378)
T ss_dssp HHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEEEEECCCBCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCccccCcceeeeeccccccchhHHHHHHHHH
Confidence 999999997754321 134689999999999999999999999999974 588999876542 3466777788
Q ss_pred HHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHH
Q 014886 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274 (416)
Q Consensus 196 ~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~ 274 (416)
+++++||+++|+|+|.++++|+++|++||++ |+++.||||+|++|++++|+++++.|+++++ .|||||++++|++++
T Consensus 154 ~~~~~Gf~~~K~k~g~~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~ 231 (378)
T 4hpn_A 154 ERRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGI--DWFEEPVVPEQLDAY 231 (378)
T ss_dssp HHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHhccceecccccCChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhccc--chhhcCCCccchhhh
Confidence 8889999999999999999999999999998 8999999999999999999999999999997 599999999999999
Q ss_pred HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 014886 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 275 ~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a 353 (416)
++|++ ++++||++||++++..+++++++.+++|++|+|++|+| ++++++++++|+++|+++++|+ ++++++.++
T Consensus 232 ~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v~~h~-~~~~i~~aa 306 (378)
T 4hpn_A 232 ARVRA----GQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHV-WGTGVQIAA 306 (378)
T ss_dssp HHHHH----HSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEECCBC-CSSHHHHHH
T ss_pred HHHHh----hCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeEEeCC-CCcHHHHHH
Confidence 99975 78999999999999999999999999999999999998 9999999999999999998876 489999999
Q ss_pred HHHHHccCCCCce--------ecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 354 AGHLSAGLGCFKF--------IDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 354 ~~hlaaa~~~~~~--------~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
++|+++++++..+ .|++. ...+.++++.+++.++||++.+|++||||||+|+|+|++|..+
T Consensus 307 ~~h~~aa~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~y~v~ 376 (378)
T 4hpn_A 307 ALQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDALTEFRMP 376 (378)
T ss_dssp HHHHHHHCCCSSCCSSCCCCCEEEECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSCCBCHHHHHHTBCC
T ss_pred HHHHHHHcCcccccccccccceeeccccchhhhhhccCCCeeECCEEECCCCCCCcceECHHHHhhCCCC
Confidence 9999998765422 22221 1123456778889999999999999999999999999999875
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=565.15 Aligned_cols=359 Identities=24% Similarity=0.366 Sum_probs=333.5
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+| +|++||||+.+. +.|++|+...+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHHcCCC
Confidence 89999999999999999999999999999999999999 999999999876 56777777766666655 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH-c
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK-Q 200 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (416)
+.+++.+|+.+.+...+. +++++||||||||++||.+|+|+|+||||. ++++++|++++..+++++.+.++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~~ 157 (370)
T 1nu5_A 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCcCCceEeeEEecCCCHHHHHHHHHHHHHhC
Confidence 999999999998766554 468999999999999999999999999997 678999999988899999999999999 9
Q ss_pred CCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 201 G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
||+.+|+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 158 RHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV--ELVEQPVPRANFGALRRLT 235 (370)
T ss_dssp SCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTC--CEEECCSCTTCHHHHHHHH
T ss_pred CccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCc--ceEeCCCCcccHHHHHHHH
Confidence 99999999995 789999999999997 7899999999999999999999999999997 4999999999999999997
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||++++++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1nu5_A 236 E----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311 (370)
T ss_dssp H----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecCCcchHHHHHHHHHH
Confidence 5 67999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+++++++.+ +|+++++.+.+|++.+++.++||++.+|++||||+++|++.+++|..
T Consensus 312 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~~~~ 368 (370)
T 1nu5_A 312 YATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDKVRHYTR 368 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHHHHHHBC
T ss_pred HhcCCCCCcccccCchhhhccccccCCceEECCEEECCCCCCCCceeCHHHHhhccc
Confidence 999999988 88888766678888888999999999999999999999999999975
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-73 Score=566.64 Aligned_cols=354 Identities=35% Similarity=0.542 Sum_probs=331.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+.+++++...+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g~~~~ 80 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999998887888887777777777 89999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
+++.+|+.|.+...++ +++++||||||||++||..|+|+|+||||.++++++|++++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 158 (366)
T 1tkk_A 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQT 158 (366)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECSCCHHHHHHHHHHHHHHTCCE
T ss_pred cHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 9999999998765554 46899999999999999999999999999777999999999889999999999999999999
Q ss_pred EEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 205 LKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 205 ~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
||+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 159 iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i--~~iEqP~~~~d~~~~~~l~~- 235 (366)
T 1tkk_A 159 LKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI--ELVEQPVHKDDLAGLKKVTD- 235 (366)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH-
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCc--eEEECCCCcccHHHHHHHHh-
Confidence 9999996 899999999999997 8999999999999999999999999999 886 69999999999999999975
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaa 359 (416)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||++++++++|+++
T Consensus 236 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 312 (366)
T 1tkk_A 236 ---ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAA 312 (366)
T ss_dssp ---HCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhh
Q 014886 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (416)
Q Consensus 360 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~ 407 (416)
++|++.++|+++|+.+.+|++.+++.++||++.+|++||||+++|++.
T Consensus 313 a~~~~~~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 360 (366)
T 1tkk_A 313 SKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAALL 360 (366)
T ss_dssp HCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEEEECC-
T ss_pred cCCCCceecccchhhcccccccCCceEECCEEECCCCCccceEecccc
Confidence 999999999998877778888888999999999999999999999875
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-73 Score=574.21 Aligned_cols=364 Identities=21% Similarity=0.264 Sum_probs=299.0
Q ss_pred ccccCce--eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-H
Q 014886 37 FKNLTQT--FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-E 113 (416)
Q Consensus 37 ~~~~~~~--~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~ 113 (416)
.+++... ..|||++|+++++++|+++||++|.++.+.++.++|||+|++|++||||+.+.. ++...+...++ .
T Consensus 9 ~~~p~~~~~~~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~~----~~~~~~~~~i~~~ 84 (388)
T 4h83_A 9 ERDPLDPQAHGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDEH----ETMFDIDRIIHEE 84 (388)
T ss_dssp -----------CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCCC----TTHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCCc----ccHHHHHHHHHHH
Confidence 3444433 569999999999999999999999999999999999999999999999997532 33333333333 4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHhhCC----C-ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CC
Q 014886 114 ACEVLKESPAMALGSVFGVVAGLLP----G-HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VS 186 (416)
Q Consensus 114 ~~~~l~g~~~~~~~~~~~~l~~~~~----g-~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~ 186 (416)
++|.|+|++|.+++.+|+.+.+... + .....|+|||||||||++||.+|+|||+||||.++++++|.+... .+
T Consensus 85 lap~LiG~dp~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~~~~~~y~~~~~~~~~ 164 (388)
T 4h83_A 85 LAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMIAIGGYYGEP 164 (388)
T ss_dssp THHHHTTSBTTCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEEEEEECCTTCT
T ss_pred HHHHHcCCChhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCcCceEEEeeccccCCC
Confidence 7899999999999999999976431 1 123468999999999999999999999999999899999877553 24
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
++++.+++++++++||++||+|+| .++++|+++|++||++ |+++.||||+|++|++++|+++++.|+++++ .||||
T Consensus 165 ~~~~~~~~~~~~~~G~~~~Kikvg~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEe 242 (388)
T 4h83_A 165 LGSIADEMHNYQELGLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNI--RWFEE 242 (388)
T ss_dssp TCSHHHHHHHHHHHTBSEEEEECSSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCC--CCEES
T ss_pred HHHHHHHHHHHHHcCCceEeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCc--ceeec
Confidence 567888999999999999999996 6899999999999997 8999999999999999999999999999997 59999
Q ss_pred CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc
Q 014886 265 PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 265 P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~ 342 (416)
|+++ +|++++++|++ ++++||++||++++..+++++++.+++|++|+|++|+| ++++++++++|+++|+++.+|
T Consensus 243 P~~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v~~h 318 (388)
T 4h83_A 243 PVEWHNDKRSMRDVRY----QGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQMGHH 318 (388)
T ss_dssp CBCSTTHHHHHHHHHH----HSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEECCC
T ss_pred CcccccchHHHHHHHh----hcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEEEec
Confidence 9986 56888998875 78999999999999999999999999999999999997 999999999999999988776
Q ss_pred cCCchHHHHHHHHHHHccCCCCceecCcCCc--ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccCC
Q 014886 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPL--LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTSE 416 (416)
Q Consensus 343 ~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~--~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~~ 416 (416)
+ ++ ++++|++++++++.+.|+..+. .+..+++.+++.++||++.+|++||||||+|+|+|++|.++.|
T Consensus 319 ~--~~----~~~~h~~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~d~l~~y~V~~e 388 (388)
T 4h83_A 319 E--EP----QVSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTLTLSDRPGLGWDLNWDYIDQYRVSKD 388 (388)
T ss_dssp S--CH----HHHHHHHHHSTTBCCEEEECTTTCHHHHHSBTTCCCCBTBEEECCSCSBTCCCBCHHHHHHHBC---
T ss_pred C--HH----HHHHHHHHHhhcCcceeecCcccchhhhhccCCCCeeECCEEECCCCCCCCeeeCHHHHHhccCCCC
Confidence 5 33 4668999999998887764432 1345677888899999999999999999999999999998764
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-73 Score=568.59 Aligned_cols=360 Identities=24% Similarity=0.417 Sum_probs=335.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (416)
|||++|+++++++|++.||+++.++.+.++.++|+|+|++|.+||||+.+.+.+++|+...+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g~d~~ 80 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIGQNPM 80 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTTCCTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999998766667777777767777 89999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCC
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFT 203 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~ 203 (416)
+++.+|+.|.+...++ +++++||||||||++||..|+|+|+||||. ++++++|.+++..+++++.+.+++++++||+
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~ 158 (369)
T 2p8b_A 81 NIEKIHDMMDNTIYGV--PTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQ 158 (369)
T ss_dssp CHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCCCSCEECCEEECSCCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeeEEecCCChHHHHHHHHHHHHcCcC
Confidence 9999999998766554 468999999999999999999999999997 6789999999988999999999999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH-HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 204 TLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV-EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 204 ~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~-~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
.+|+|+|.+++.|+++|++||++ |+++.|++|+|++|+.++|+ ++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 234 (369)
T 2p8b_A 159 SFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNI--DWIEQPVIADDIDAMAHIRS-- 234 (369)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCC--SCEECCBCTTCHHHHHHHHH--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH--
Confidence 99999999999999999999997 89999999999999999999 99999999997 49999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+++.++++|++++
T Consensus 235 --~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa~ 312 (369)
T 2p8b_A 235 --KTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFS 312 (369)
T ss_dssp --TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHTT
T ss_pred --hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecCCCccHHHHHHHHHHHHc
Confidence 67999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred CCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 361 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+|++.++|++++.++.+| .+++.++||++.+|++||||+++|++++++|...+
T Consensus 313 ~~~~~~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 365 (369)
T 2p8b_A 313 KKIITSVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIEINEDTLQELTVFQ 365 (369)
T ss_dssp CTTEEEECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCCCCHHHHHHHEEEE
T ss_pred CCCCceeccCcchhcccc--CCCceeECCEEeCCCCCcCCCccCHHHHhhceeee
Confidence 999999999887655556 67788999999999999999999999999998653
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-73 Score=575.71 Aligned_cols=362 Identities=19% Similarity=0.281 Sum_probs=306.0
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (416)
.+|||++|+++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+.....++..... .++ .+.|.|+|++
T Consensus 8 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~--~i~~~l~p~liG~d 85 (392)
T 3ddm_A 8 ASITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRAR--LVETVLAPLLTARA 85 (392)
T ss_dssp CCBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSSTTHHHHHHH--HHHHTHHHHHTTSC
T ss_pred CCCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCCCCCchHHHHH--HHHHHHHHHhCCCC
Confidence 3599999999999999999999999999999999999999999999999963211112222222 223 4889999999
Q ss_pred CCCHHHHHHHHHhh------CCCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHH
Q 014886 123 AMALGSVFGVVAGL------LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA 194 (416)
Q Consensus 123 ~~~~~~~~~~l~~~------~~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~ 194 (416)
+.+++.+|+.|.+. ..|+ ....|++|||||||||+||.+|+|||+||||..++|++|.+ +.. ++++.+.+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~~-g~~-~e~~~~~a 163 (392)
T 3ddm_A 86 FADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYAS-GIN-PENPEDVV 163 (392)
T ss_dssp BSSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCCEEEEEEE-EEC-SSSHHHHH
T ss_pred cCCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeEEee-cCC-HHHHHHHH
Confidence 99999999999764 2343 23468999999999999999999999999998899999987 433 78889999
Q ss_pred HHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC-HH
Q 014886 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WE 272 (416)
Q Consensus 195 ~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~ 272 (416)
++++++||++||+|+|.++++|+++|++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++| ++
T Consensus 164 ~~~~~~G~~~iKlK~g~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~ 241 (392)
T 3ddm_A 164 ARKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQL--DWLEEPLRADRPAA 241 (392)
T ss_dssp HHHHHHTCCCEEEECSSCHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTSCHH
T ss_pred HHHHHcCCCEEEEecCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCC--CEEECCCCccchHH
Confidence 99999999999999999999999999999998 8999999999999999999999999999997 49999999999 99
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++|++
T Consensus 242 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~~~i~~ 316 (392)
T 3ddm_A 242 EWAELAQ----AAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRYCPHY-LGAGIGL 316 (392)
T ss_dssp HHHHHHH----HCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEECCEE-CSCHHHH
T ss_pred HHHHHHH----hcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEEecC-CchHHHH
Confidence 9999875 68999999999999999999999999999999999998 9999999999999999999887 4999999
Q ss_pred HHHHHHHccCCC---CceecCcCCcccccCCCCcce-eEeCcEEEcCCCCCcccccChhhHHhhhccCC
Q 014886 352 GFAGHLSAGLGC---FKFIDLDTPLLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNIAWGLQTSE 416 (416)
Q Consensus 352 ~a~~hlaaa~~~---~~~~e~~~p~~~~~d~~~~~~-~~~~G~~~~p~~PGlGield~~~l~~~~~~~~ 416 (416)
++++|+++++|| ..++|++.......+++.+++ +++||++.+|++||||+++|++++++|....|
T Consensus 317 aa~~hl~aa~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~~ 385 (392)
T 3ddm_A 317 QASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGRITLGGAPGLGVTPDLAALRAACAARE 385 (392)
T ss_dssp HHHHHHHHHSCCSSSCCEEEEESSCCHHHHTTCGGGGGCBTTEEECCSCSBTSCCCCHHHHHHHC----
T ss_pred HHHHHHHHhCCCCCCCceEEecCCcchHHHhccCCcceeeCCEEECCCCCcCCceeCHHHHHHhhhhcc
Confidence 999999999999 677887643222234777888 89999999999999999999999999988765
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-73 Score=570.83 Aligned_cols=364 Identities=24% Similarity=0.334 Sum_probs=321.7
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc-cCcccHHHHHHHHHH-HHH-HHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-VTAEDQQTAMVKASE-ACE-VLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~-~~~e~~~~~~~~~~~-~~~-~l~g 120 (416)
|.|||++|+++++++|++.||+++.++++.++.++|+|+|++|.+||||+.+.+. |++++...+...+++ +.| .|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l~G 80 (397)
T 2qde_A 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLG 80 (397)
T ss_dssp --CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTTTT
T ss_pred CCCEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhhcC
Confidence 5699999999999999999999999999999999999999999999999998765 567777666666776 889 8999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.|....+| .+++++||||||||++||..|+|+|+||||. ++++++|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~l~~~l~~~~~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~~g~~~~e~~~~~a~~~~~ 158 (397)
T 2qde_A 81 EDPTKIEKIVGRMDILTRD--NNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLR 158 (397)
T ss_dssp CCTTCHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEBCEECCCSCHHHHHHHHHHHHH
T ss_pred CChHhHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999998544444 3568999999999999999999999999997 578999999887889999999999999
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 200 ~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
+||+.+|+|+|.+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 159 ~Gf~~vKik~g~~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 236 (397)
T 2qde_A 159 EGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNL--SKIEQPLPAWDLDGMARLR 236 (397)
T ss_dssp HTCSCEEEECCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHHHHH
T ss_pred hhhhheeecccCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC--CEEECCCChhhHHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999999999999997 4999999999999999987
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+|++++++|+
T Consensus 237 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ig~aa~~hl 312 (397)
T 2qde_A 237 G----KVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHL 312 (397)
T ss_dssp T----TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCCSCCHHHHHHHHHH
T ss_pred h----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHH
Confidence 4 78999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCC------C-----CceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 358 SAGLG------C-----FKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 358 aaa~~------~-----~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+++++ + ..++++++|+.+.+|++.+++.++||++.+|++||||+++|++.+++|....
T Consensus 313 aa~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 381 (397)
T 2qde_A 313 LAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPG 381 (397)
T ss_dssp HHHCTTGGGSCBCCCHHHHHTTCSSGGGCCCCSBTTCCEEETTEEECCCSSBTCCCBCHHHHHHHBCTT
T ss_pred HHhCCcccccccccccceeeeecCCchhhhhccccCCceEECCEEECCCCCcCCcccCHHHHhhhcccc
Confidence 99998 6 2345666776667788888899999999999999999999999999998653
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-72 Score=564.88 Aligned_cols=348 Identities=18% Similarity=0.263 Sum_probs=314.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (416)
|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.. .+. +...+ +.+.|.|+|+++.
T Consensus 27 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~-~~~---~~~~i~~~l~p~l~G~d~~ 102 (383)
T 3toy_A 27 AAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRL-ALK---PLVHLVEDIGRELAGKALV 102 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSSGG-GHH---HHHHHHHHHHHHTTTCBCC
T ss_pred CEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCCCc-hHH---HHHHHHHHHHHHhCCCCCC
Confidence 899999999999999999999999999999999999999999999999875421 222 22223 5588999999999
Q ss_pred CHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHc
Q 014886 125 ALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ 200 (416)
Q Consensus 125 ~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (416)
+++ +|+.+.+.. .|+ ...+|++||||||||++||.+|+|||+||||.+++|++|.+++..+++++.+++++++++
T Consensus 103 ~~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~e~~~~~a~~~~~~ 181 (383)
T 3toy_A 103 PVD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDE 181 (383)
T ss_dssp HHH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCCEEEEEECSSCCHHHHHHHHHHHHHT
T ss_pred cHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEeEecCCCCHHHHHHHHHHHHHc
Confidence 999 999997643 233 235789999999999999999999999999998999999998889999999999999999
Q ss_pred -CCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 201 -GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 201 -G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
||++||+|+|. ++++|+++|++||++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|
T Consensus 182 ~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l 259 (383)
T 3toy_A 182 HGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDL--TWIEEPVPQENLSGHAAV 259 (383)
T ss_dssp SCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHH
T ss_pred cCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcchHHHHHHH
Confidence 99999999995 799999999999998 8999999999999999999999999999997 499999999999999998
Q ss_pred HHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. .+++|
T Consensus 260 ~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~~------~a~lh 329 (383)
T 3toy_A 260 RE----RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILP------EASAH 329 (383)
T ss_dssp HH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBCCCSCH------HHHHH
T ss_pred Hh----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHH------HHHHH
Confidence 75 68999999999999999999999999999999999998 999999999999999999999984 36789
Q ss_pred HHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 357 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 357 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++++|++.++|+.. +.++++.+++.++|| +.+|++||||+++|++++++|..+
T Consensus 330 l~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G-i~~p~~PGlGve~d~~~l~~~~v~ 383 (383)
T 3toy_A 330 VLPVTPTAHFLEVLD---FAGAILTEPLRVIDG-KVTAKGPGLGLAWNESAVAKYQVT 383 (383)
T ss_dssp HGGGCTTBCCEEECC---SSGGGBSSCCCCBTT-EECCCCSBTSCCBCHHHHHHHEEC
T ss_pred HHHhCCCCceeeccc---hhhhhccCCCeeeCC-EECCCCCcCCccCCHHHHHhhhCC
Confidence 999999998888652 345677778899999 999999999999999999999753
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-73 Score=571.74 Aligned_cols=355 Identities=19% Similarity=0.270 Sum_probs=323.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||.++.++.+.++.++|||+| +|++||||+.+. |.|++|+...+...+++ +.|.|+|++
T Consensus 7 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~liG~d 85 (400)
T 3mwc_A 7 ARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGKE 85 (400)
T ss_dssp CCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHHTTCC
T ss_pred cEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999 999999999875 56888888777666665 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-------------CCCceeeeeEeecCC-C--
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-------------GVSNTITTDITIPIV-S-- 186 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG-------------g~~~~v~~~~~~~~~-~-- 186 (416)
+.+++.+|+.+...++|+ +.|++||||||||++||.+|+|||+||| +.+++|++|++++.. +
T Consensus 86 ~~~~e~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~r~~v~~~~s~g~~~~~~ 163 (400)
T 3mwc_A 86 PLSIEEFNHLIKNGIRGN--HFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGR 163 (400)
T ss_dssp CSSHHHHHHHHHHSCCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCBCSEEEBCEEECCCTTCC
T ss_pred CCCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccCCCeEEeeEEeccCCCCC
Confidence 999999999998766665 3589999999999999999999999999 557799999998854 6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecC
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (416)
++++.+++++++++||++||+|++ +++|+++|++||++ |+++.|++|+|++|+.++ +++++.|+++++ .|||||
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~--~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i--~~iEqP 238 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIK--PGWDVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKC--LFHEQP 238 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECB--TTBSHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCC--SCEESC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC--cchHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCC--CEEeCC
Confidence 899999999999999999999996 47899999999998 899999999999999999 999999999997 499999
Q ss_pred CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 266 ~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||
T Consensus 239 ~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~ 314 (400)
T 3mwc_A 239 LHYEALLDLKELGE----RIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTM 314 (400)
T ss_dssp SCTTCHHHHHHHHH----HSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCS
T ss_pred CChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEecCC
Confidence 99999999999875 68999999999999999999999999999999999997 99999999999999999999999
Q ss_pred CchHHHHHHHHHHHccCCCCcee-cCcCCc-cccc--CCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 345 VETRLAMGFAGHLSAGLGCFKFI-DLDTPL-LLSE--DPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 345 ~es~ig~~a~~hlaaa~~~~~~~-e~~~p~-~~~~--d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+||+|++++++|||+ ++|+.+. +++++. .+.+ |++. +.++||++.+|++||||+++|++++++|...+
T Consensus 315 ~es~i~~aa~~hlaa-~~~~~~~~d~~~~~~~~~~~~d~~~--~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~ 386 (400)
T 3mwc_A 315 PESGLGARFLISLAS-FRGFVFPADVAASEKWYGKGNDLVE--NTMTDGKIYVPDEPGASFDMTLSHLEALGKKI 386 (400)
T ss_dssp CCCHHHHHHHHHHTT-BTTBCSCBCCCCHHHHHCTTTSSSC--CCEETTEEECCCSBTTTTTCCHHHHHHHEEEE
T ss_pred CCCHHHHHHHHHHHc-CCCCcceeccCchhhhhhcccCeeE--EEEECCEEECCCCCCcCcccCHHHHHhhcccc
Confidence 999999999999988 8988764 455432 2344 7766 88999999999999999999999999998754
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-73 Score=569.53 Aligned_cols=352 Identities=20% Similarity=0.276 Sum_probs=313.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
.+|||++|+++++++|++.||.++.++.+.++.++|||+|++|++||||+.+ +++.. ..++.+.|.|+|+++
T Consensus 22 ~mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~-----g~~~~---~~i~~l~p~liG~d~ 93 (398)
T 4dye_A 22 SMMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMW-----GAPVA---AIVRRMAPDLIGTSP 93 (398)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHHHHHTTCCT
T ss_pred CCceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecC-----chHHH---HHHHHHHHHHcCCCc
Confidence 4589999999999999999999999999999999999999999999999975 23322 234668999999999
Q ss_pred CCHHHHHHHHHhh--CCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee------cCC---CHHHHH
Q 014886 124 MALGSVFGVVAGL--LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI------PIV---SPAEAA 191 (416)
Q Consensus 124 ~~~~~~~~~l~~~--~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~------~~~---~~~~~~ 191 (416)
.+++.+|+.|... ..|.....|++|||||||||+||.+|+|||+||||. +++|++|+++ +.. +++++.
T Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~~g~~~~~~~e~~~ 173 (398)
T 4dye_A 94 FALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMA 173 (398)
T ss_dssp TCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECGGGSTTCCTTTHHHHHH
T ss_pred cCHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCcCCeEEEEEEEeccccCCcccCCCHHHHH
Confidence 9999999988531 111112468999999999999999999999999997 5789999987 443 358899
Q ss_pred HHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC
Q 014886 192 ELASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 192 ~~~~~~~~~-G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (416)
+++++++++ ||++||+|+|.++++|+++|++||++.+++.|++|+|++|++++|+++++.|+++++ .|||||++ |
T Consensus 174 ~~a~~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~--d 249 (398)
T 4dye_A 174 EHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDL--EYLEDPCV--G 249 (398)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSS--H
T ss_pred HHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEcCCCC--C
Confidence 999999999 999999999988999999999999988999999999999999999999999999997 59999998 8
Q ss_pred HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 271 ~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.++++
T Consensus 250 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~e~~i 325 (398)
T 4dye_A 250 IEGMAQVKA----KVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGI 325 (398)
T ss_dssp HHHHHHHHH----HCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHH
T ss_pred HHHHHHHHh----hCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcCCcchHH
Confidence 999999875 68999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 350 AMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 350 g~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+.++++|+++++||+.+ +.+. ...+.+|++ +++.++||++.+|++||||+++|++++++|.+
T Consensus 326 ~~aa~l~laaa~p~~~~-~~d~~~~~~~~d~~-~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~~ 388 (398)
T 4dye_A 326 ATAAHLAVVSSTPVLSR-AIDSMYYLHADDII-EPLHLENGRLRVPSGPGLGVSVDEDKLRHYAG 388 (398)
T ss_dssp HHHHHHHHHHTCTTCCS-CBCCSGGGBSCCSB-SCCCEETTEEECCCSSBTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccce-eecccchhhhhhcc-CCceeeCCEEECCCCCCCCceeCHHHHHHHHH
Confidence 99999999999998765 2332 233456766 67899999999999999999999999999975
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-72 Score=566.42 Aligned_cols=347 Identities=20% Similarity=0.309 Sum_probs=305.1
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH-HHHHHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK-ASEACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~-~~~~~~~l~g~~ 122 (416)
|+|||++|+++.+++| ||.+ ++ ++.++|||+|++|++||||+. + +++...+... ++.+.|.|+|++
T Consensus 1 m~MkI~~i~~~~~~~p---~~~~----~~-~~~~~V~v~td~G~~G~GE~~--~---~~~~~~~~~~~~~~l~p~liG~d 67 (393)
T 4dwd_A 1 MSLKIAKVEALSVAMG---DGTG----WM-PTSAFVRITAEDGTVGWGEAS--P---MLGGIASLGVVARDIAPFLEGQE 67 (393)
T ss_dssp -CCBEEEEEEEEEECC---C----------CEEEEEEEEETTSCEEEEEEC--C---GGGGHHHHHHHHHHTHHHHTTSB
T ss_pred CCCEEEEEEEEEEcCC---Cccc----cc-ceEEEEEEEECCCCEEEEEcc--C---cHHHHHHHHHHHHHHHHHHCCCC
Confidence 6799999999999998 6654 44 789999999999999999997 2 3444433222 456889999999
Q ss_pred CCCHHHHHHHHHhhCC--C--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec---CCCHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLLP--G--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---IVSPAEAAELA 194 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~--g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~---~~~~~~~~~~~ 194 (416)
+.+++.+|+.|.+... | ....+|++|||||||||+||.+|+|||+||||. +++|++|.+++ ..+++++.+++
T Consensus 68 ~~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~s~~g~~~~~~e~~~~~a 147 (393)
T 4dwd_A 68 VLDHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVDEVVREV 147 (393)
T ss_dssp GGGHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeEEecCccCCCCHHHHHHHH
Confidence 9999999999986532 2 123478999999999999999999999999998 78999999962 46899999999
Q ss_pred -HHHHHcCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecC
Q 014886 195 -SKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (416)
Q Consensus 195 -~~~~~~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (416)
++++++||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||
T Consensus 148 ~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEqP 225 (393)
T 4dwd_A 148 ARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGY--SWFEEP 225 (393)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTC--SEEECC
T ss_pred HHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECC
Confidence 99999999999999996 799999999999998 8999999999999999999999999999997 499999
Q ss_pred CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 266 ~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
++++|++++++|++ ++++||++||++++..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++||+
T Consensus 226 ~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 300 (393)
T 4dwd_A 226 VQHYHVGAMGEVAQ----RLDITVSAGEQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQT 300 (393)
T ss_dssp SCTTCHHHHHHHHH----HCSSEEEBCTTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred CCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCC
Confidence 99999999999875 6899999999999999999999999 999999999998 99999999999999999999999
Q ss_pred CchHHHHHHHHHHHccCCCC----ceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 345 VETRLAMGFAGHLSAGLGCF----KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 345 ~es~ig~~a~~hlaaa~~~~----~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++|++++++||++++||+ .++|+ +....+++.+++.++||++.+|++||||+++|++++++|...
T Consensus 301 -~~~i~~aa~~hlaaa~p~~~~~~~~~e~---~~~~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~~~ 370 (393)
T 4dwd_A 301 -QPGVGHFANIHVLSTLMHMTKPVELADR---WDRGRPVFRNPAEPVDGHFALGDAPGLGIVVDEDELASRATE 370 (393)
T ss_dssp -CSSHHHHHHHHHHHTCTTCCSCEEECTT---GGGGTTTBSSCCCCBTTEEECCCCSBTCCCBCHHHHHHHEEE
T ss_pred -CcHHHHHHHHHHHHhCCCcccccceeEe---ecCcccccCCCceeECCEEECCCCCcCCCccCHHHHHhcccc
Confidence 9999999999999999998 55552 111237778888999999999999999999999999999764
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-72 Score=564.03 Aligned_cols=361 Identities=19% Similarity=0.321 Sum_probs=316.5
Q ss_pred ceeeEEEeEEEEEEEEecc-ccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc-cCcccHHHHHHHHHHHHHHHh
Q 014886 42 QTFTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-VTAEDQQTAMVKASEACEVLK 119 (416)
Q Consensus 42 ~~~~mkI~~v~~~~~~~pl-~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~-~~~e~~~~~~~~~~~~~~~l~ 119 (416)
..-+|||++|+++++++|+ +.||++|.++.+.++.++|||+|++|++||||+.+.+. +..+....+...++.+.+.++
T Consensus 6 ~~~sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 6 HHHSLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp ---CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3457999999999999998 66999999999999999999999999999999987643 444455555555667899999
Q ss_pred CCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH
Q 014886 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (416)
Q Consensus 120 g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (416)
|+++.+++ ++..+.....++. .|++||||||||++||.+|+|||+||||+ ++++++|++++..+++++.+++++++
T Consensus 86 g~d~~~~~-~~~~~~~~~~~~~--~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~s~~~~~~~~~~~~a~~~~ 162 (376)
T 4h2h_A 86 GAEALPLP-LHTRMDSLLCGHN--YAKSALDIAVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQ 162 (376)
T ss_dssp TCBSSHHH-HHHHHHHHCSCCH--HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEECEEEECSCCHHHHHHHHHHHH
T ss_pred CCccCcHH-HHHHHHHhhcccH--HHHHHHHHhhhHHHHHhcCCCceecCCCCcCCceeEeeecccCCHHHHHHHHHHHH
Confidence 99998876 4445555666664 57999999999999999999999999997 56899999999999999999999999
Q ss_pred HcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHH
Q 014886 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 199 ~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (416)
++||+++|+|+| .++++|+++|+++|++ |++++||+|+|++|++++|+++++.|+++++ |||||++ ++++++
T Consensus 163 ~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~---~iEeP~~--~~~~~~ 237 (376)
T 4h2h_A 163 REGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLE 237 (376)
T ss_dssp HHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCSS--SHHHHH
T ss_pred hcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc---cccCCcc--hhhhHh
Confidence 999999999999 4679999999999985 7999999999999999999999999998863 9999995 477888
Q ss_pred HhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~ 354 (416)
+|++ .+++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.+++
T Consensus 238 ~l~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~~~~i~~aa~ 313 (376)
T 4h2h_A 238 AIRP----LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAAC 313 (376)
T ss_dssp HHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSSCSHHHHHHH
T ss_pred hhhh----cccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCCCCccHHHHHHH
Confidence 8764 78999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCC--ceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 355 GHLSAGLGCF--KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 355 ~hlaaa~~~~--~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+|++++.++. ...++..|+...++++.++++++||++.+|++||||||+|+|+|.+-..+
T Consensus 314 ~hlaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~e~L~~p~~s 375 (376)
T 4h2h_A 314 THIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTIDPERFGPPLFS 375 (376)
T ss_dssp HHHHTTSCGGGEEECCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCCCTTTTCSCSEE
T ss_pred HHHHHhCCccccccccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEECHHHcCCcccC
Confidence 9999987543 22445567666677778889999999999999999999999999765443
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-72 Score=563.74 Aligned_cols=363 Identities=23% Similarity=0.321 Sum_probs=325.3
Q ss_pred cCceeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHH
Q 014886 40 LTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACE 116 (416)
Q Consensus 40 ~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~ 116 (416)
+...+.|||++|+++++++|++.||+++.++.+.++.++|+|+|++|.+||||+.+. |.|++|+...+...+++ +.|
T Consensus 14 ~~~~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p 93 (386)
T 1wue_A 14 VPRGSHMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIP 93 (386)
T ss_dssp ---CCCCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHH
T ss_pred CCCCCcCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHH
Confidence 344577999999999999999999999999999999999999999999999999864 45778887776666665 789
Q ss_pred HHhCCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCC-CHHHHHHHHH
Q 014886 117 VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAELAS 195 (416)
Q Consensus 117 ~l~g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~-~~~~~~~~~~ 195 (416)
.|+|+++.+++.+|+.+.. +.|+ ++|++||||||||++||..|+|+|+||||.++++++|++++.. +++++.++++
T Consensus 94 ~l~G~d~~~~~~l~~~l~~-~~g~--~~A~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~g~~~~~~~~~~~a~ 170 (386)
T 1wue_A 94 LLLTEAIEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQ 170 (386)
T ss_dssp HHTTSCCCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSSSCCSEEECCEEECCCSCHHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCeeEeeEEecCCCCHHHHHHHHH
Confidence 9999999999999998865 4554 5689999999999999999999999999987899999988754 6999999999
Q ss_pred HHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHH
Q 014886 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 196 ~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (416)
+++++||+++|+|+|. ++|+++|++||++.|++.|++|+|++|+.++| ++++.|+++++ .|||||++++|+++++
T Consensus 171 ~~~~~G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~ 245 (386)
T 1wue_A 171 LAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQL--AMIEQPFAADDFLDHA 245 (386)
T ss_dssp HHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCC--SCEECCSCTTCSHHHH
T ss_pred HHHHhhhheEEEeeCc--HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCC--eEEeCCCCcccHHHHH
Confidence 9999999999999984 67999999999988899999999999999999 99999999987 5999999999999999
Q ss_pred HhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~ 354 (416)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|+.+++
T Consensus 246 ~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~ 321 (386)
T 1wue_A 246 QLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALN 321 (386)
T ss_dssp HHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHH
T ss_pred HHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECCCcccHHHHHHH
Confidence 9974 68999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 355 GHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 355 ~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+|+| +++++.+ .+++.+. .+.+|++.+++.++||++.+|++||||+++|++.+++|...+
T Consensus 322 ~hla-a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 383 (386)
T 1wue_A 322 LQFA-SQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKYSQYQ 383 (386)
T ss_dssp HHHH-TSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHHHHEEEE
T ss_pred HHHH-hCCCCCcccccCchhhhhhhccccCCcEEECCEEECCCCCcCCceeCHHHHhhhheee
Confidence 9997 6888765 3444322 245778788889999999999999999999999999997653
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-72 Score=561.25 Aligned_cols=352 Identities=19% Similarity=0.257 Sum_probs=302.8
Q ss_pred EEEeEEEEEEEEeccccce-eecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPF-TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf-~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
|||++|+++.+++|++.|| +++.++.+.++.++|||+|++|++||||+.+.+.+.++ ..+...++ .+.|.|+|+++
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~--~~~~~~i~~~l~p~liG~d~ 78 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSD--RLITSCISDCYAPLLLGEDA 78 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCCHHHH--HHHHHHHHHTTHHHHTTSBT
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccccCcH--HHHHHHHHHHHHHHhCCCCh
Confidence 8999999999999999999 99999999999999999999999999999875422121 12223344 47899999999
Q ss_pred CCHHHHHHHHHhhC----CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCce-eeeeEeecC---CCHHHHHHH
Q 014886 124 MALGSVFGVVAGLL----PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPI---VSPAEAAEL 193 (416)
Q Consensus 124 ~~~~~~~~~l~~~~----~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~-v~~~~~~~~---~~~~~~~~~ 193 (416)
.+++.+|+.|.+.. .| ....+|++||||||||++||.+|+|||+||||.+++ |++|.+.+. .+++++.++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~~~~v~~y~s~~~~~~~~~~~~~~~ 158 (372)
T 3tj4_A 79 SDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAG 158 (372)
T ss_dssp TCHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEECTTCCTTSCHHHHHHH
T ss_pred hhHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCCCCCeEEEEecCCccCCCHHHHHHH
Confidence 99999999997632 23 234578999999999999999999999999998765 999988432 389999999
Q ss_pred HHHHHHc-CCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC
Q 014886 194 ASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 194 ~~~~~~~-G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (416)
+++++++ ||++||+|+| .++++|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|
T Consensus 159 a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d 236 (372)
T 3tj4_A 159 SARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDD 236 (372)
T ss_dssp HHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCE--EEEESCSCTTC
T ss_pred HHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEECCCCchh
Confidence 9999999 9999999999 6789999999999998 7999999999999999999999999999986 69999999999
Q ss_pred HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc--CCch
Q 014886 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG--MVET 347 (416)
Q Consensus 271 ~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~--~~es 347 (416)
++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+ |.+
T Consensus 237 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~- 311 (372)
T 3tj4_A 237 VTSHARLAR----NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQ- 311 (372)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTT-
T ss_pred HHHHHHHHh----hcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHH-
Confidence 999999875 68999999999999999999999999999999999998 9999999999999999999999 654
Q ss_pred HHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 348 ~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++|+++++||+.++|+. |+ .++++.+++.++||++.+|++||||+++|++++++|.++
T Consensus 312 -----~~~~l~aa~~~~~~~e~~-~~--~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 370 (372)
T 3tj4_A 312 -----VHVHLSYWHPASTILEYI-PW--IKDHFEEPIHVRDGVYKRPEQPGASTTPLAESFTRYGKA 370 (372)
T ss_dssp -----THHHHHHHCTTBCCEEEC-CS--SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHHHHHEEC
T ss_pred -----HHHHHhhhCCCCceeeec-hH--HHHhccCCCceeCCEEECCCCCCCCCcCCHHHHHHhhhc
Confidence 368999999999998887 43 357778888999999999999999999999999999865
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=562.45 Aligned_cols=351 Identities=18% Similarity=0.251 Sum_probs=306.9
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH---------H
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE---------A 114 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~---------~ 114 (416)
|.|||++|+++++++|++.+ .+++.+++ ++|||+|++|++||||+. ++...+...+++ +
T Consensus 1 ~~MkI~~i~~~~~~~P~~~~----~~~~~~~~-~~V~v~td~G~~G~GE~~-------~~~~~~~~~i~~~~~~~~~~~l 68 (374)
T 3sjn_A 1 MVLKITDIEVLHLRVPAMDA----DCEWGEDA-VIVKVHTDKGIVGVGEAD-------SSPLVVQACIEAPQTNFYCNGL 68 (374)
T ss_dssp -CCBEEEEEEEEEESSCTTS----CCCTTSEE-EEEEEEETTSCEEEEEES-------SCHHHHHHHHHCCCSBTTBCCH
T ss_pred CCcEEEEEEEEEEeccCcCC----cCcccceE-EEEEEEECCCCEEEEcCC-------CChHHHHHHHHhhhccchHhHH
Confidence 67999999999999987766 33334445 899999999999999932 222333334454 8
Q ss_pred HHHHhCCCCCCHHHHHHHHHhhCCC----ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC-CCceeeeeEeecC-CCHH
Q 014886 115 CEVLKESPAMALGSVFGVVAGLLPG----HQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPI-VSPA 188 (416)
Q Consensus 115 ~~~l~g~~~~~~~~~~~~l~~~~~g----~~~~~a~said~ALwDl~gk~~g~pl~~LLGg-~~~~v~~~~~~~~-~~~~ 188 (416)
.|.|+|+++.+++.+|+.|.+...+ ....+|++|||||||||+||.+|+|||+|||| .+++|++|.++.. .+++
T Consensus 69 ~p~liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~e 148 (374)
T 3sjn_A 69 KRLLIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCYGTFIPADKPE 148 (374)
T ss_dssp HHHHTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSGG
T ss_pred HHHHcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCcCCceeEEeccCCCCCHH
Confidence 8999999999999999999865332 22346899999999999999999999999999 5679999933321 2348
Q ss_pred HHHHHHHHHHHcCCCEEEEecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHHHHHHHhCCCCceeee
Q 014886 189 EAAELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG---~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~-~~~A~~~~~~L~~~~l~~~~iE 263 (416)
++.+.+++++++||++||+|+| .++++|+++|++||++ ++++.|++|+|++|+ +++|+++++.|+++++ .|||
T Consensus 149 ~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i--~~iE 226 (374)
T 3sjn_A 149 DNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNL--NWIE 226 (374)
T ss_dssp GGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCC--SEEE
T ss_pred HHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCc--eEEE
Confidence 8999999999999999999998 5789999999999998 899999999999999 9999999999999997 4999
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~ 342 (416)
||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|
T Consensus 227 qP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h 302 (374)
T 3sjn_A 227 EPVLADSLISYEKLSR----QVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLIPH 302 (374)
T ss_dssp CSSCTTCHHHHHHHHH----HCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEECCB
T ss_pred CCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEec
Confidence 9999999999999875 68999999999999999999999999999999999998 999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 343 ~~~es~ig~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++ +++|++++++||++++||+.++|+.. +..+.+|++.+++.++||++.+|++||||+++|++++++|..
T Consensus 303 ~~-~~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 373 (374)
T 3sjn_A 303 GF-STGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVAVSDAPGLGIELDEELIAKYRV 373 (374)
T ss_dssp CC-SCHHHHHHHHHHHHTCTTCCEEEEECCCCHHHHHSBTTCCCEETTEEECCCSSBTCCCBCHHHHHHHBC
T ss_pred CC-CcHHHHHHHHHHHHhCCCCcEEEecCCcchhhhhhccCCCeeeCcEEECCCCCCCCCCcCHHHHHhccC
Confidence 99 89999999999999999998888753 333457788888999999999999999999999999999975
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=560.73 Aligned_cols=349 Identities=21% Similarity=0.311 Sum_probs=314.1
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~ 123 (416)
.|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.. .+ .....+ +.+.|.|+|+++
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~-~~---~~~~~~~~~l~p~liG~d~ 102 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPK-AM---KYLVPALHDMSDMLAGQPL 102 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSCGG-GH---HHHHHHHHHHHHHHTTSBC
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCCCc-hH---HHHHHHHHHHHHHHCCCCc
Confidence 3999999999999999999999999999999999999999999999999875431 12 222223 568899999999
Q ss_pred CCHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC---CCHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI---VSPAEAAELASK 196 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~---~~~~~~~~~~~~ 196 (416)
.++ .+|+.+.+.. .|+ ...+|++|||||||||+||.+|+|||+||||.+++|++|.+++. .+++++.+++++
T Consensus 103 ~~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~~~~e~~~~~a~~ 181 (390)
T 3ugv_A 103 APA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVEL 181 (390)
T ss_dssp CHH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEEEECSCCCSSCHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceEEEEecccccCCCHHHHHHHHHH
Confidence 999 9999997643 232 23579999999999999999999999999999899999998776 788999999999
Q ss_pred HHHc---CCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 197 YRKQ---GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 197 ~~~~---G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++++ ||++||+|+|. ++++|+++|++||++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 182 ~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~ 259 (390)
T 3ugv_A 182 KAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGL--EWIEEPVVYDNF 259 (390)
T ss_dssp HHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCC--SEEECCSCTTCH
T ss_pred HHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcccH
Confidence 9999 99999999995 789999999999998 8999999999999999999999999999997 499999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 260 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~----- 330 (390)
T 3ugv_A 260 DGYAQLRH----DLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHLYP----- 330 (390)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBSCH-----
T ss_pred HHHHHHHH----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHH-----
Confidence 99999875 68999999999999999999999999999999999998 999999999999999999999984
Q ss_pred HHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
.+++|+++++|++.++|+.. +.++++.+++.++||++.+|++||||+++|++++++|..
T Consensus 331 -~a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~ 389 (390)
T 3ugv_A 331 -EVGAHVMRVTETAHWLEWQS---WADPILQEPYALSDGDLIVPDKPGLGLDWDEDVVAANLV 389 (390)
T ss_dssp -HHHHHHHTTCTTBCCEEECC---TTGGGBSSCCCEETTEEECCSSSBTCCCBCHHHHHTTBC
T ss_pred -HHHHHHHHhCCCCceeeccc---hhhhhccCCCeeECCEEECCCCCcCCCCcCHHHHHhhhc
Confidence 36789999999998888652 345677788899999999999999999999999999975
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=567.15 Aligned_cols=357 Identities=19% Similarity=0.251 Sum_probs=307.9
Q ss_pred ccCceeeEEEeEEEEEEEEeccccceeecCceeee-eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHH
Q 014886 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (416)
Q Consensus 39 ~~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~-~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (416)
.+..++.|||++|+++++++| ..||.++.+.... .+.++|+|+|++|++||||+.. .+.. ...++.+.|.
T Consensus 16 ~~~~~~~mkI~~i~~~~v~~P-~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~v---~~~i~~l~p~ 86 (441)
T 3vc5_A 16 ENLYFQSMLIREVRVTPVAFR-DPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYG-----DLAH---LEQVRAAAAR 86 (441)
T ss_dssp -------CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEEC-----CHHH---HHHHHHHHHT
T ss_pred cceeecCcEEEEEEEEEEecC-CcccccccCccccceeEEEEEEEECCCCEEEEeCCC-----hHHH---HHHHHHHHHH
Confidence 456667899999999999999 9999999876543 5679999999999999999863 2222 2334668999
Q ss_pred HhCCCCCCHHHHHHHHHhhCCC--------C--------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeE
Q 014886 118 LKESPAMALGSVFGVVAGLLPG--------H--------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDI 180 (416)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~~g--------~--------~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~ 180 (416)
|+|+++.+++.+|+.|.+.+.+ . ...+|++|||+|||||+||.+|+|||+||||+ +++|++|.
T Consensus 87 LiG~d~~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~v~~~a 166 (441)
T 3vc5_A 87 LPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSA 166 (441)
T ss_dssp CTTSBTTCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEBCE
T ss_pred hCCCChhHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEE
Confidence 9999999999999999875321 1 22368999999999999999999999999997 67899854
Q ss_pred ee----------------cCCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 181 TI----------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 181 ~~----------------~~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
.+ +..++++++++++++++ +||++||+|+|. ++++|+++|++||++.|++.|+||+|++|++
T Consensus 167 ~~~~~~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~ 246 (441)
T 3vc5_A 167 YLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTV 246 (441)
T ss_dssp EEECBCSBCTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCSCH
T ss_pred eeccccccCCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeccCCCCCCH
Confidence 32 12689999999999987 499999999995 8899999999999988999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G- 321 (416)
++|++++++|+++ + .|||||++ +++++++|++ ++++||++||++++..+++++++.+++|++|+|++++|
T Consensus 247 ~~Ai~~~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GG 317 (441)
T 3vc5_A 247 ETSIRVGRALDGV-L--EYLEDPTP--GIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGG 317 (441)
T ss_dssp HHHHHHHHHTTTT-C--SEEECCSS--SHHHHHHHHT----TSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTS
T ss_pred HHHHHHHHHHHHH-H--HHhhccCC--CHHHHHHHHh----cCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCC
Confidence 9999999999998 7 49999985 7899999874 78999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-cCcCCcccccCCC-CcceeEeCcEEEcCCCCCc
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGH 399 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~~~~p~~PGl 399 (416)
++++++++++|+++|+++++|++.+++|++++++||++++||+.+. +++.|+...+|++ .+++.++||++.+|++|||
T Consensus 318 itea~kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGL 397 (441)
T 3vc5_A 318 LVRSAHIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGL 397 (441)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGGTTCCSBCTTSCCCBTTEEECCCSSBT
T ss_pred HHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcceeecccchhhcccccccCCCceEECCEEECCCCCCC
Confidence 9999999999999999999999999999999999999999998774 4555665545665 4678999999999999999
Q ss_pred ccccChhhHHhhhc
Q 014886 400 GGFLHWDNIAWGLQ 413 (416)
Q Consensus 400 Gield~~~l~~~~~ 413 (416)
|||+|++++++|.+
T Consensus 398 Gveld~~~l~~~~~ 411 (441)
T 3vc5_A 398 GVELDRDALAVMHE 411 (441)
T ss_dssp SCCBCHHHHHHHHH
T ss_pred CceECHHHHHHHHH
Confidence 99999999999864
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=562.20 Aligned_cols=361 Identities=25% Similarity=0.369 Sum_probs=323.8
Q ss_pred CceeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHH
Q 014886 41 TQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEV 117 (416)
Q Consensus 41 ~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~ 117 (416)
-+.+.|||++|+++++++|++.||+++.++++.++.++|+|+|++|.+||||+.+. +.|++|+...+...+++ +.|.
T Consensus 15 ~~~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~ 94 (393)
T 1wuf_A 15 PRGSHMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPL 94 (393)
T ss_dssp ----CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHH
T ss_pred CCCCcCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999864 46777887766666665 6899
Q ss_pred HhCCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCC-CHHHHHHHHHH
Q 014886 118 LKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAELASK 196 (416)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~-~~~~~~~~~~~ 196 (416)
|+|+++.+++.+++.+.. ++|+ +.|++||||||||++||..|+|+|+||||.++++++|++++.. +++++.+++++
T Consensus 95 l~G~d~~~~~~l~~~l~~-~~g~--~~a~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~v~~~~~~g~~~~~e~~~~~a~~ 171 (393)
T 1wuf_A 95 LAQRKIRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQ 171 (393)
T ss_dssp HHHCEESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEBCEEECCCSCHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeEEeCCCCCHHHHHHHHHH
Confidence 999999999999988865 4554 4689999999999999999999999999987899999988854 58999999999
Q ss_pred HHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHH
Q 014886 197 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (416)
Q Consensus 197 ~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (416)
++++||+++|+|+| +++|+++|++||++.|++.|++|+|++|+.++| ++++.|+++++ .|||||++++|++++++
T Consensus 172 ~~~~G~~~~KiKvg--~~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 246 (393)
T 1wuf_A 172 YVDQGYERVKLKIA--PNKDIQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDL--EMIEQPFGTKDFVDHAW 246 (393)
T ss_dssp HHHHTCCEEEEECB--TTBSHHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTC--SEEECCSCSSCSHHHHH
T ss_pred HHHHhhHhheeccC--hHHHHHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCC--eEEECCCCCcCHHHHHH
Confidence 99999999999998 478999999999988899999999999999999 99999999987 59999999999999999
Q ss_pred hHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 014886 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (416)
Q Consensus 277 l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~ 355 (416)
|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+.++++
T Consensus 247 l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~ 322 (393)
T 1wuf_A 247 LQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNI 322 (393)
T ss_dssp HHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHH
T ss_pred HHH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHH
Confidence 874 78999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 356 HLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 356 hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
|++ +++++.+ .+++.+. ++.+|++.+++.++||++.+|++||||+++|++.+++|...
T Consensus 323 hla-a~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 382 (393)
T 1wuf_A 323 ALA-ARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLKKYTKS 382 (393)
T ss_dssp HHH-TSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHHHTTEEE
T ss_pred HHH-hCCCCCcccccCchhhhhhhhcccCCcEEECCEEECCCCCcCCCccCHHHHhhhcee
Confidence 997 6888765 4555443 34678878888999999999999999999999999999754
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-71 Score=556.66 Aligned_cols=357 Identities=23% Similarity=0.329 Sum_probs=324.5
Q ss_pred eeEEEeEEEEEEEEeccccceeecCce--eeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~--~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
|.|||++|+++++++|++.||+++.++ ++.++.++|+|+|++|.+||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l~g 80 (378)
T 2qdd_A 1 MSLRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHLLG 80 (378)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHCC
Confidence 569999999999999999999999998 88899999999999999999999987 778888776666666778999999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.|...++| .+++++||||||||+.||..|+|+|+||||. ++++++|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~ 158 (378)
T 2qdd_A 81 LDPRSLDHVNRVMDLQLPG--HSYVKSPIDMACWDILGQVAGLPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAA 158 (378)
T ss_dssp CCTTCHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCCCceEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999655555 3568999999999999999999999999997 678999999888899999999999999
Q ss_pred cCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 200 ~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
+||+.+|+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+ ++ + |||||++ |++++++|
T Consensus 159 ~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~--i-~iEqP~~--d~~~~~~l 232 (378)
T 2qdd_A 159 QGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR--D-WIEQPCQ--TLDQCAHV 232 (378)
T ss_dssp HTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC--C-EEECCSS--SHHHHHHH
T ss_pred HhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC--c-EEEcCCC--CHHHHHHH
Confidence 999999999996 899999999999997 789999999999999999999999998 86 5 9999998 89999998
Q ss_pred HHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|
T Consensus 233 ~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~h 308 (378)
T 2qdd_A 233 AR----RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTAALH 308 (378)
T ss_dssp HT----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCcHHHHHHHHH
Confidence 74 68999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCC--ce-ecCcCCcccccCCCCc-ceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 357 LSAGLGCF--KF-IDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 357 laaa~~~~--~~-~e~~~p~~~~~d~~~~-~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
|++++||+ .| +++ +| .+.+|++.+ ++.++||++.+|++||||+++|++++++|...
T Consensus 309 laaa~~~~~~~~~~d~-~~-~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 368 (378)
T 2qdd_A 309 LAASTPEANRLASWLG-HA-HLADDPIPGQGARNRDGLATPPSAPGLGVIPDPEALGRPVAS 368 (378)
T ss_dssp HHHTSCTTTBCCBCCG-GG-GBSCCSSTTCSCCCBTTEECCCCSSBTCCCCCGGGSCSCSEE
T ss_pred HHHcCCCcceeccccc-cc-hhhhccccCCCceEECCEEECCCCCcCCCccCHHHHhcceee
Confidence 99999984 33 455 45 346788888 88999999999999999999999999998764
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-71 Score=562.84 Aligned_cols=351 Identities=19% Similarity=0.279 Sum_probs=307.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceee-eeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~-~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
+.|||++|+++++++| ..||.++.+... ..+.++|+|+|++|++||||+.. .+.. ...++.+.|.|+|++
T Consensus 26 ~~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~~---~~~i~~l~p~LiG~d 96 (445)
T 3vdg_A 26 NRIRITGARVTPVAFA-DPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYA-----DTVH---LERLQAAAHAIVGRS 96 (445)
T ss_dssp GCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECC-----CHHH---HHHHHHHHHHHTTCB
T ss_pred CCCEEEEEEEEEEecC-CccccccccccccceeEEEEEEEECCCCeEEEeCCC-----hHHH---HHHHHHHHHHhCCCC
Confidence 4599999999999999 899999887643 35779999999999999999853 2322 223466899999999
Q ss_pred CCCHHHHHHHHHhhCCC--------C--------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee---
Q 014886 123 AMALGSVFGVVAGLLPG--------H--------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--- 182 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g--------~--------~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~--- 182 (416)
+.+++.+|+.|.+.+.+ . ....|++|||||||||+||.+|+|||+||||+ +++|++|.++
T Consensus 97 ~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~~~ 176 (445)
T 3vdg_A 97 VFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYLFYK 176 (445)
T ss_dssp TTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSSSEEEBCEEEECB
T ss_pred hhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccc
Confidence 99999999999875321 1 22368999999999999999999999999997 6789986433
Q ss_pred -------------cCCCHHHHHHHHHHHHHc-CCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Q 014886 183 -------------PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 247 (416)
Q Consensus 183 -------------~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~ 247 (416)
+..+++++.+++++++++ ||++||+|+|. ++++|+++|++||++.|++.|+||+|++|++++|++
T Consensus 177 ~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 177 WAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSSSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred ccccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 126899999999999875 99999999995 889999999999998899999999999999999999
Q ss_pred HHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHH
Q 014886 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 326 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l 326 (416)
+++.|+++ + .|||||++ +++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++
T Consensus 257 ~~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGitea~ 327 (445)
T 3vdg_A 257 VAAGLEGV-L--EYLEDPTP--GLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSR 327 (445)
T ss_dssp HHHHTTTT-C--SEEECCSS--SHHHHHHHHH----HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHHHHH
T ss_pred HHHHHhhH-H--HeeeCCCC--CHHHHHHHHh----cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHHHHH
Confidence 99999998 7 59999995 7999999875 68999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-cCcCCcccccCCC-CcceeEeCcEEEcCCCCCcccccC
Q 014886 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 327 ~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~~~~p~~PGlGield 404 (416)
+++++|+++|+++++|++.+++|++++++||++++||+.+. +...|+.. +|++ .+++.++||++.+|++||||||+|
T Consensus 328 kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~-~d~~~~~~~~~~~G~i~~p~~PGLGveld 406 (445)
T 3vdg_A 328 LLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRH-EDVVAPGALNFCDGEVQVPATPGLGVEID 406 (445)
T ss_dssp HHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCCSCBCCCGGGCC-CCSBCSSSSCEETTEEECCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcceeeccccchhh-cccccCCCceEECCEEECCCCCcCCCcCC
Confidence 99999999999999999999999999999999999998764 44446544 4544 567899999999999999999999
Q ss_pred hhhHHhhhc
Q 014886 405 WDNIAWGLQ 413 (416)
Q Consensus 405 ~~~l~~~~~ 413 (416)
++++++|.+
T Consensus 407 ~~~l~~~~~ 415 (445)
T 3vdg_A 407 EDALAALHE 415 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-71 Score=558.02 Aligned_cols=347 Identities=18% Similarity=0.213 Sum_probs=305.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (416)
|||++|+++.+++|+ | ++..++.++|||+|++|++||||+.+.+ ++.+... ..+++ +.|.|+|+++.
T Consensus 1 MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~~~---~~i~~~l~p~LiG~dp~ 68 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P------HVGGMYWIFVKLKTDDGIEGVGEIYSAT-FGPKAMA---PIIDDVFERHLLNRDPH 68 (412)
T ss_dssp CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCCS-SCHHHHH---HHHHHHHHHHTTTSCTT
T ss_pred CEEEEEEEEEEccCC--C------ccCCCceEEEEEEECCCCEEEEeecCCC-CCHHHHH---HHHHHHhHHHhCCCChh
Confidence 899999999999998 4 2334689999999999999999996532 3333322 23343 67999999999
Q ss_pred CHHHHHHHHHhhC---CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec---------CCCHHHH
Q 014886 125 ALGSVFGVVAGLL---PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---------IVSPAEA 190 (416)
Q Consensus 125 ~~~~~~~~l~~~~---~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~---------~~~~~~~ 190 (416)
+++.+|+.|.+.. .+. ...+|+||||||||||+||.+|+|||+||||+ +++|++|.++. ..+++++
T Consensus 69 ~~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~e~~ 148 (412)
T 4e4u_A 69 HVERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLA 148 (412)
T ss_dssp CHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCCBCTTSCBCSSCHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEeccCCcccccccCCCHHHH
Confidence 9999999996632 222 23568999999999999999999999999995 67899997653 4689999
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 014886 191 AELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~~-------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 256 (416)
.+++++++++||++||+|+|.+ +++|+++|++||++ |+++.|++|+|++|+.++|+++++.|++++
T Consensus 149 ~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~ 228 (412)
T 4e4u_A 149 AECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYD 228 (412)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcC
Confidence 9999999999999999999854 78999999999998 899999999999999999999999999999
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHc
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS 335 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~ 335 (416)
+ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 302 (412)
T 4e4u_A 229 P--LWFEEPVPPGQEEAIAQVAK----HTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVH 302 (412)
T ss_dssp C--SEEECCSCSSCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHT
T ss_pred C--cEEECCCChhhHHHHHHHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999975 78999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEccCCchHHHHHHHHHHHccCCCCceecC-cCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 336 gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~-~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
|+++++|++ +|+|++++++||++++||+.++|+ .....+.+|++.+++.++||++.+|++||||+|+|++++++|
T Consensus 303 gi~v~~h~~-~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~ 378 (412)
T 4e4u_A 303 YAQIAPHLY-NGPVGAAASIQLATCTPNFLIQESIMTWGGFHAEVVKTPIRWEDGYIIPSNEPGLGIELDMDVVKRH 378 (412)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHTCTTBCCEEESTTSCHHHHHTBSSCCEEETTEEECCCSSBTSCCBCHHHHHHT
T ss_pred CCEEEecCC-CcHHHHHHHHHHHHhCCCceeeeecCccchhhHhhccCCCeeECCEEECCCCCCCCccCCHHHHHhc
Confidence 999999986 799999999999999999988874 232334567888889999999999999999999999999999
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-71 Score=552.56 Aligned_cols=357 Identities=18% Similarity=0.300 Sum_probs=322.9
Q ss_pred EEEeEEEEEEEEecccc-ceeecCc-eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIA-PFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~-pf~~a~~-~~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
|||++|+++++++|++. ||.++.+ +.+.++.++|+|+|++|++||||+.+. +.|++++...+...++.+.|.|+|++
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 83 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLD 83 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999 9999877 578899999999999999999999886 67778877766666777899999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+|+.|.....++ .++++||||||||+.||.+|+|+|+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~a~~~~~~G 161 (371)
T 2ps2_A 84 PRRVDRINDAMDDALLGH--EDAKTAIDVACWDIFGKSVGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKG 161 (371)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCEEBEEEECSCCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 999999999998765554 468999999999999999999999999995 56999999998889999999999999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|+.+|+|+|.+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.| ++++ + |||||++ |++++++|++
T Consensus 162 f~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~--i-~iE~P~~--~~~~~~~l~~ 236 (371)
T 2ps2_A 162 YKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLD--F-ALEAPCA--TWRECISLRR 236 (371)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCC--C-EEECCBS--SHHHHHHHHT
T ss_pred hheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcC--C-cCcCCcC--CHHHHHHHHh
Confidence 9999999998899999999999997 78999999999999999999999999 9997 4 9999998 8999999874
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+++.++++||+
T Consensus 237 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 312 (371)
T 2ps2_A 237 ----KTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIVHLA 312 (371)
T ss_dssp ----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCCCcCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred ccCCCCc-eecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 359 AGLGCFK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 359 aa~~~~~-~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++|+. +.+++++..+.+|++.+++.++||++.+|++||||+++|+++++++..
T Consensus 313 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 368 (371)
T 2ps2_A 313 QTIPERSLRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLGIMPRLDVLGEAVA 368 (371)
T ss_dssp TTSCTTTEEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTSCEECHHHHCSCSE
T ss_pred HhCCCcccccccccchhhhccccCCCceEECCEEECCCCCCCCCeeCHHHHhChhh
Confidence 9999976 356666555567887778889999999999999999999999998753
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-71 Score=557.97 Aligned_cols=351 Identities=17% Similarity=0.185 Sum_probs=306.8
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
+|||++|+++.+++|+ | ++..++.++|||+|++|++||||+.+. .++.+... ..+++ +.|.|+|+++
T Consensus 1 ~MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~~~---~~i~~~l~p~liG~dp 68 (404)
T 4e5t_A 1 SMRLSDIETFVVGNPP--P------RHGGRYFIFVKLVTACGITGYGEIYNA-TFGPDLVA---KMAEDVFARQFAGEDP 68 (404)
T ss_dssp -CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCC-SSCHHHHH---HHHHHHHHHHTTTSCT
T ss_pred CCEEEEEEEEEeccCC--c------ccCCCceEEEEEEECCCCEEEEeeccC-CCchHHHH---HHHHHHHHHHhcCCCh
Confidence 4899999999999998 4 223468999999999999999999653 23333322 23343 6799999999
Q ss_pred CCHHHHHHHHHhhC---CCCh-hhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec---------------
Q 014886 124 MALGSVFGVVAGLL---PGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--------------- 183 (416)
Q Consensus 124 ~~~~~~~~~l~~~~---~g~~-~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~--------------- 183 (416)
.+++.+|+.|.+.. .+.. ...|+||||||||||+||.+|+|||+||||+ +++|++|.+++
T Consensus 69 ~~~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~p~~d~~~~ 148 (404)
T 4e5t_A 69 HHIEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDVYPDPDKPNV 148 (404)
T ss_dssp TCHHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCC----------CCCT
T ss_pred hHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCCcCeEEEEEEecccccccccccccccc
Confidence 99999999997632 1221 3568999999999999999999999999995 67899997653
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~-------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
..+++++.+++++++++||++||+|+|.+ +++|+++|++||++ |+++.|++|+|++|+.++|++++
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~ 228 (404)
T 4e5t_A 149 YNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLA 228 (404)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHH
Confidence 45889999999999999999999999854 78999999999998 89999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +++++++
T Consensus 229 ~~l~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~i 302 (404)
T 4e5t_A 229 RRLEAYDP--LWFEEPIPPEKPEDMAEVAR----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKI 302 (404)
T ss_dssp HHHGGGCC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHH
T ss_pred HHHhhcCC--cEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 99999997 49999999999999999975 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCc-CCcccccCCCCcceeEeCcEEEcCCCCCcccccChhh
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~ 407 (416)
+++|+++|+++++|++ +|+|++++++||++++||+.++|+. ....+.+|++.+++.++||++.+|++||||+|+|++.
T Consensus 303 a~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~ 381 (404)
T 4e5t_A 303 AAMAECHSAQIAPHLY-CGPLVALANIQLATCSPNFLVLESIRTFDGFFAELLTTPIRWENGYIIPSQEPGLGHDLNEDV 381 (404)
T ss_dssp HHHHHHTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEEESTTSCTHHHHTBSSCCEEETTEEECCCSSBTSSCBCHHH
T ss_pred HHHHHHcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEecccccchhHHhcCCCCeeeCCEEECCCCCCCCcCCCHHH
Confidence 9999999999999987 7999999999999999999888742 2223346788888999999999999999999999999
Q ss_pred HHhhhcc
Q 014886 408 IAWGLQT 414 (416)
Q Consensus 408 l~~~~~~ 414 (416)
+++|..+
T Consensus 382 ~~~~~~~ 388 (404)
T 4e5t_A 382 ARANPYT 388 (404)
T ss_dssp HHTSBCC
T ss_pred HHhCcCC
Confidence 9999754
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-71 Score=563.54 Aligned_cols=357 Identities=19% Similarity=0.273 Sum_probs=303.4
Q ss_pred EEEeEEEEEEEEeccccceeecCcee-------------------eeeeEEEEEEEECCCceEEEEeccCCccCcccHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRL-------------------DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQT 106 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~-------------------~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~ 106 (416)
.||++|+++.+.+|+++||..+.... ....+++|||+|++|++||||+.+.. +++...
T Consensus 26 ~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~--~~~~~~- 102 (412)
T 4h1z_A 26 DRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV--APRATM- 102 (412)
T ss_dssp CCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--CHHHHH-
T ss_pred ceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--CHHHHH-
Confidence 49999999999999999986432111 11346999999999999999997542 222222
Q ss_pred HHHHHHH-HHHHHhCCCCCCHHHHHHHHHhhCC-----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeee
Q 014886 107 AMVKASE-ACEVLKESPAMALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTD 179 (416)
Q Consensus 107 ~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~-----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~ 179 (416)
..+++ ++|.|+|++|.+++.+|+.+.+... +.....|+||||||||||+||.+|+|||+||||+. +++++|
T Consensus 103 --~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~~~~v~~y 180 (412)
T 4h1z_A 103 --EIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAY 180 (412)
T ss_dssp --HHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCCCSEEEEE
T ss_pred --HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCCCCceEEEE
Confidence 22333 7899999999999999999976432 22234689999999999999999999999999985 589999
Q ss_pred Eee-cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 180 ITI-PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
.+. +..+++++.+.+++++++||++||+|+|.+.+.|+++++++|++ +|+++|++|+|++|++++|+++++.|+++++
T Consensus 181 ~s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
T 4h1z_A 181 ISGLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGL 260 (412)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCE
T ss_pred eccCCCCcHHHHHHHHHHHHhcCcceeccccccchhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhccccc
Confidence 774 45678889999999999999999999998788999999999997 8999999999999999999999999999986
Q ss_pred CceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCC
Q 014886 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (416)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi 337 (416)
.|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|+++-|++++++++++|+++|+
T Consensus 261 --~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~GGit~~~kia~~A~~~gi 334 (412)
T 4h1z_A 261 --WFAEAPVRTEDIDGLARVAA----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGHKGITQFMRIGAYAHVHHI 334 (412)
T ss_dssp --EEEECCSCTTCHHHHHHHHH----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred --ceecCCCCccchHHHHHHHh----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCCCChHHHHHHHHHHHHCCC
Confidence 69999999999999999975 789999999999999999999999999999999986339999999999999999
Q ss_pred cEEEccCCchHHHHHHHHHHHccCCCCceecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 338 NLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 338 ~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++|++++++|++++++|+++++||+.+.|+..+. ...++++.+++.++||++.+|++||||||+|+|++++|.+
T Consensus 335 ~v~~h~~~~~~i~~aa~lhl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGve~d~eal~~~rk 411 (412)
T 4h1z_A 335 KVIPHATIGAGIFLAASLQASAALANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQGLLKK 411 (412)
T ss_dssp EECCCCCSSCSHHHHHHHHHHHHCTTBCCEEECHHHHTGGGGGEEECCEEETTEEECCCSSBTSEEECHHHHHHCEE
T ss_pred cEEecCCcchHHHHHHHHHHHHhCCCCCeeeccccccccchhhccCCCeEECCEEECCCCCCCCeEECHHHHHHhcc
Confidence 999999999999999999999999999888876532 2346677888999999999999999999999999998864
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-70 Score=550.31 Aligned_cols=358 Identities=18% Similarity=0.277 Sum_probs=325.3
Q ss_pred eeEEEeEEEEEEEEecccc-ceeecCce-eeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIA-PFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~-pf~~a~~~-~~~~~~~iV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
|.|||++|+++++++|++. ||+++.++ .+.++.++|+|+|++|.+||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g 80 (379)
T 2rdx_A 1 MSLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLG 80 (379)
T ss_dssp -CCCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHHcC
Confidence 5599999999999999999 99999998 78899999999999999999999987 667777655555555668899999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+|+.|.....| .+++++||||||||+.||..|+|+|+||||. ++++++|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 158 (379)
T 2rdx_A 81 QDPRQVARMERLMDHLVQG--HGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRA 158 (379)
T ss_dssp SCTTCHHHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999654555 3568999999999999999999999999996 678999999888889999999999999
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhH
Q 014886 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (416)
Q Consensus 200 ~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (416)
+||+.||+|+|.+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|++++ + |||||++ |++++++|+
T Consensus 159 ~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iE~P~~--~~~~~~~l~ 233 (379)
T 2rdx_A 159 AGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD--Y-ILEQPCR--SYEECQQVR 233 (379)
T ss_dssp TTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSC--C-EEECCSS--SHHHHHHHH
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCC--e-EEeCCcC--CHHHHHHHH
Confidence 999999999998899999999999998 789999999999999999999999999997 5 9999998 899999987
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+ ++++||++||+++++++++++++.+++|++++|++++| ++++++++++|+++|+++++||++||++++++++|+
T Consensus 234 ~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~l 309 (379)
T 2rdx_A 234 R----VADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHF 309 (379)
T ss_dssp T----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSHHHHHHHHHH
T ss_pred h----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEeeccCcHHHHHHHHHH
Confidence 4 78999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCcee---cCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 358 SAGLGCFKFI---DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 358 aaa~~~~~~~---e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+++++++.+. ++ +| ++.+|++.+++.++||++.+|++||||+++|++++++|...
T Consensus 310 aaa~~~~~~~~~~~~-~~-~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 367 (379)
T 2rdx_A 310 AASTPEEFLINSTDL-MN-YNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVAD 367 (379)
T ss_dssp HHTSCTTTEEEECCG-GG-GBSSCSEEECCEEETTEEECCCSSBTSEEECHHHHCSCSEE
T ss_pred HHcCCCccccccccc-cc-hhhhccccCCceEECCEEEcCCCCcCCeeeCHHHHhcceee
Confidence 9999996543 33 44 33678887888999999999999999999999999999764
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-71 Score=561.02 Aligned_cols=350 Identities=15% Similarity=0.212 Sum_probs=309.3
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
+|||++|+++.++.|+. + +..++.++|||+|++|++||||+.+.+. ..+++ ...+++ +.|.|+|++|
T Consensus 1 mMkIt~i~~~~~~~p~~-----~---~~~~~~v~V~v~Td~G~~G~GE~~~~~~-~~~~v---~~~i~~~l~p~LiG~dp 68 (433)
T 3rcy_A 1 MVKLRDLDIIVTAPPAP-----G---WGGRYWILVKLTTDDGITGWGECYAASV-GPEAM---RAVIEDVFARHMEGENP 68 (433)
T ss_dssp -CCEEEEEEEEECCCTT-----C---TTCSCEEEEEEEETTSCEEEEEECCCSS-CHHHH---HHHHHHHHHHHTTTSCT
T ss_pred CCeEEEEEEEEEcCCCC-----c---cCCceEEEEEEEECCCCEEEEeccCCCC-CHHHH---HHHHHHHHHHHhCCCCc
Confidence 48999999999999873 1 2246899999999999999999876542 23332 233444 7899999999
Q ss_pred CCHHHHHHHHHhhC--C-CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee---cC-------CCHH
Q 014886 124 MALGSVFGVVAGLL--P-GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---PI-------VSPA 188 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~-g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~---~~-------~~~~ 188 (416)
.+++.+|+.|.+.. . |. ...+|+||||||||||+||.+|+|||+||||+ +++|++|.++ +. .+++
T Consensus 69 ~~ie~~~~~l~~~~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~g~~~~~~~~~~e 148 (433)
T 3rcy_A 69 ENIELMFRRVYSSGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSAD 148 (433)
T ss_dssp TCHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSSEEEEEECCCCTTSCHHHHTTCHH
T ss_pred ccHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeEEEEEEEcccCCcccccCCCCHH
Confidence 99999999998742 2 32 34579999999999999999999999999996 6789999865 22 6899
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~-------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
++.+++++++++||++||+|+|. +++.|+++|++||++ |+++.|++|+|++|+.++|+++++.|++
T Consensus 149 ~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~ 228 (433)
T 3rcy_A 149 MAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEP 228 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999973 367899999999998 8999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
+++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 229 ~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~ 302 (433)
T 3rcy_A 229 YSP--LWYEEPVPPDNVGAMAQVAR----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAE 302 (433)
T ss_dssp GCC--SEEECCSCTTCHHHHHHHHH----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHH
T ss_pred cCC--CEEECCCChhhHHHHHHHHh----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHH
Confidence 997 59999999999999999975 68999999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 334 ~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++|+++++|++ +|+|++++++||++++||+.++|++.+ .+.++++++++.++||++.+|++||||||+|++++++|..
T Consensus 303 ~~gv~~~~h~~-~s~i~~aa~lhlaaa~pn~~~~E~~~~-~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~~~l~~~~~ 380 (433)
T 3rcy_A 303 VYNAQMAPHLY-AGPVEWAANVHFAASIPNILMCESIET-PFHDALIKGSIRVEGGYITPPEAPGLGIEVDEALARANPY 380 (433)
T ss_dssp TTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEECCCC-HHHHHHTTTCSCEETTEECCCCSSBTCCCCCHHHHHTSBC
T ss_pred HcCCEEEecCC-CCHHHHHHHHHHHHHhccCcEEEeccc-hhhhhhcCCCceEECCEEEcCCCCcCCcccCHHHHHhccC
Confidence 99999999985 999999999999999999998998765 3446778888999999999999999999999999999975
Q ss_pred c
Q 014886 414 T 414 (416)
Q Consensus 414 ~ 414 (416)
+
T Consensus 381 ~ 381 (433)
T 3rcy_A 381 H 381 (433)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=554.04 Aligned_cols=347 Identities=15% Similarity=0.180 Sum_probs=306.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
+.|||++|+++.+.- + ..+.++|||+|++|++||||+.+.+ +.+.+ ...+++ +.|.|+|++
T Consensus 4 ~~mkIt~v~~~~~~~----------~---~~~~~~V~v~td~G~~G~GE~~~~~--~~~~~---~~~i~~~l~p~liG~d 65 (401)
T 3sbf_A 4 KETIISDIHCIITKP----------D---RHNLITVVVETNEGVTGFGCATFQQ--RPLAV---KTMVDEYLKPILIGKN 65 (401)
T ss_dssp -CCBEEEEEEEEECS----------S---SSCEEEEEEEETTSCEEEEECCCTT--SHHHH---HHHHHHTHHHHHTTSB
T ss_pred CCeEEEEEEEEEEcC----------C---CceEEEEEEEeCCCCEEEEccccCC--CHHHH---HHHHHHHHHHHHcCCC
Confidence 569999999987631 0 1267999999999999999987532 23332 233455 889999999
Q ss_pred CCCHHHHHHHHHhhC--C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~--~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (416)
+.+++.+|+.|.+.. . |....+|+||||||||||+||.+|+|||+||||+ ++++++|.+++..+++++.+++++++
T Consensus 66 ~~~~e~~~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 145 (401)
T 3sbf_A 66 ANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFL 145 (401)
T ss_dssp TTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCcCCeeeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999998642 2 2223568999999999999999999999999997 56899998888889999999999999
Q ss_pred HcCCCEEEEecCCC------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 199 KQGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 199 ~~G~~~~KiKvG~~------------------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
++||++||+|+|.. ++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+
T Consensus 146 ~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~ 225 (401)
T 3sbf_A 146 EKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVE 225 (401)
T ss_dssp HTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHG
T ss_pred HcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999842 57899999999998 899999999999999999999999999
Q ss_pred hCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHH
Q 014886 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (416)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A 332 (416)
++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|
T Consensus 226 ~~~i--~~iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A 299 (401)
T 3sbf_A 226 QYKP--YFIEDILPPNQTEWLDNIRS----QSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLC 299 (401)
T ss_dssp GGCC--SCEECSSCTTCGGGHHHHHT----TCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHH
T ss_pred hcCC--CEEECCCChhHHHHHHHHHh----hCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHH
Confidence 9997 49999999999999999874 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 333 RASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 333 ~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.++++.+++.++||++.+|++||||+++|++++++|
T Consensus 300 ~~~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~ 379 (401)
T 3sbf_A 300 QNFGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEF 379 (401)
T ss_dssp HHHTCEECCCCCTTSCHHHHHHHHHHHHHSTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSSCCCCHHHHHTS
T ss_pred HHcCCEEEecCCcccchHHHHHHHHHHHhCCCcceeeccCCchhhHhhcCCCCeeeCCEEECCCCCCCCceECHHHHHhc
Confidence 9999999999996 799999999999999999988888764434567778888999999999999999999999999999
Q ss_pred hcc
Q 014886 412 LQT 414 (416)
Q Consensus 412 ~~~ 414 (416)
...
T Consensus 380 ~~~ 382 (401)
T 3sbf_A 380 PVM 382 (401)
T ss_dssp CCC
T ss_pred ccc
Confidence 854
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-70 Score=553.77 Aligned_cols=351 Identities=18% Similarity=0.226 Sum_probs=302.4
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH------HHHHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEACEV 117 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~~~ 117 (416)
+.|||++|+++++++|+ +...++.++|||+|++|++||||+.+.+ +.....+.. ++.+.|.
T Consensus 3 ~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~p~ 69 (394)
T 3mqt_A 3 LGANIVSVEFIPVNVAA---------TNWSENTVIVKVTDENGVYGLGEADGPP----ECMKAFSEIENEHKWLNNIKEA 69 (394)
T ss_dssp --CCEEEEEEEEEECC--------------CEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCGGGG
T ss_pred CCCeEeEEEEEEEecCC---------CCCCccEEEEEEEECCCCEEEEEECCcH----HHHHHHHhcccchhhHHHHHHH
Confidence 45999999999999997 2345689999999999999999997532 211111110 0127899
Q ss_pred HhCCCCCCHHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec--C-C--CH
Q 014886 118 LKESPAMALGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--I-V--SP 187 (416)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~--~-~--~~ 187 (416)
|+|++|.+++.+|+.|.+.. .| .....|+||||||||||+||.+|+|||+||||. ++++++|++++ . . ++
T Consensus 70 liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~~ 149 (394)
T 3mqt_A 70 VIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYPSVAADATL 149 (394)
T ss_dssp TTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSSBCCEEECCCCCCTTCCH
T ss_pred hCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCCCCeEEEEEEecCCCCCCcch
Confidence 99999999999999997642 22 223568999999999999999999999999997 56899998876 2 2 34
Q ss_pred H----HHHHHHHHHHHcCCCEEEE-ecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHhCCC
Q 014886 188 A----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 188 ~----~~~~~~~~~~~~G~~~~Ki-KvG---~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w-~~~~A~~~~~~L~~~~l 257 (416)
+ ++.+++++++++||++||+ |+| .++++|+++|++||++ |+++.|++|+|++| +.++|+++++.|+++++
T Consensus 150 ~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i 229 (394)
T 3mqt_A 150 SEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDL 229 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCC
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCC
Confidence 4 5667888999999999999 999 6799999999999998 89999999999999 99999999999999997
Q ss_pred CceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcC
Q 014886 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 336 (416)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~g 336 (416)
.|||||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 230 --~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~g 303 (394)
T 3mqt_A 230 --YFIEACLQHDDLIGHQKLAA----AINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHHN 303 (394)
T ss_dssp --SEEESCSCTTCHHHHHHHHH----HSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHHT
T ss_pred --eEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcC
Confidence 49999999999999999875 68999999999999999999999999999999999997 999999999999999
Q ss_pred CcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCc----ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 337 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 337 i~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
+++++|++ +++|+.++++||++++||+.++|++.+. .+.++++.+++.++||++.+|++||||+++|++++++|.
T Consensus 304 i~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~ 382 (394)
T 3mqt_A 304 AQLMPHNW-KTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSDKPGLGIELNIEFVEQVT 382 (394)
T ss_dssp CEECCCCC-SCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCCCCSBTCCCBCHHHHHHHH
T ss_pred CEEeccCC-CchHHHHHHHHHHHhCCCCceEEecCcccccchhHHhhccCCCcccCCEEECCCCCCCCCCcCHHHHHhcc
Confidence 99999998 9999999999999999999999987652 234567778889999999999999999999999999998
Q ss_pred cc
Q 014886 413 QT 414 (416)
Q Consensus 413 ~~ 414 (416)
.+
T Consensus 383 ~~ 384 (394)
T 3mqt_A 383 GH 384 (394)
T ss_dssp CS
T ss_pred cc
Confidence 65
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-70 Score=554.09 Aligned_cols=347 Identities=19% Similarity=0.195 Sum_probs=307.2
Q ss_pred eeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCC
Q 014886 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKES 121 (416)
Q Consensus 43 ~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (416)
...|||++|+++.+.- .++.++|||+|++|++||||+.+.. ..+. +...+++ +.|.|+|+
T Consensus 14 ~~~mkIt~v~~~~~~~--------------~~~~~~V~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~ 74 (418)
T 3r4e_A 14 GSHMKITAARVIITCP--------------GRNFVTLKIETDQGVYGIGDATLNG--RELS---VVAYLQEHVAPCLIGM 74 (418)
T ss_dssp TCCCCEEEEEEEEECS--------------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTHHHHHTTS
T ss_pred CCCCEEEEEEEEEEcC--------------CCcEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhcCC
Confidence 3569999999976531 1367999999999999999986532 2222 2333454 88999999
Q ss_pred CCCCHHHHHHHHHhhC--C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHH
Q 014886 122 PAMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 197 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~--~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (416)
+|.+++.+|+.|.+.. . |....+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.++++++
T Consensus 75 dp~~ie~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~ 154 (418)
T 3r4e_A 75 DPRRIEDIWQYVYRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHY 154 (418)
T ss_dssp CTTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCccCCeeeEEEeCCCCCHHHHHHHHHHH
Confidence 9999999999997642 2 2223568999999999999999999999999997 5789999988888999999999999
Q ss_pred HHcCCCEEEEecCC---------------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHH
Q 014886 198 RKQGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQ 243 (416)
Q Consensus 198 ~~~G~~~~KiKvG~---------------------------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~ 243 (416)
+++||++||+|+|. +++.|+++|++||++ ++++.|++|+|++|+.+
T Consensus 155 ~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~ 234 (418)
T 3r4e_A 155 IDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQ 234 (418)
T ss_dssp HHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHH
T ss_pred HHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHH
Confidence 99999999999984 157899999999998 89999999999999999
Q ss_pred HHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-h
Q 014886 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 322 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i 322 (416)
+|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| +
T Consensus 235 ~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGi 308 (418)
T 3r4e_A 235 EAANLGKMLEPYQL--FWLEDCTPAENQEAFRLVRQ----HTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGL 308 (418)
T ss_dssp HHHHHHHHHGGGCC--SEEESCSCCSSGGGGHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHH
T ss_pred HHHHHHHHHHhhCC--CEEECCCCccCHHHHHHHHh----cCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCH
Confidence 99999999999997 49999999999999999875 68999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCccc
Q 014886 323 LGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401 (416)
Q Consensus 323 ~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGi 401 (416)
+++++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.++++.+++.++||++.+|++||||+
T Consensus 309 t~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv 388 (418)
T 3r4e_A 309 THLRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGETPGHGV 388 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBSEEEETTEEEECCCSBSSB
T ss_pred HHHHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCC
Confidence 99999999999999999999997 69999999999999999999999876544456778888999999999999999999
Q ss_pred ccChhhHHhhhcc
Q 014886 402 FLHWDNIAWGLQT 414 (416)
Q Consensus 402 eld~~~l~~~~~~ 414 (416)
|+|++++++|...
T Consensus 389 eld~~~l~~~~~~ 401 (418)
T 3r4e_A 389 DIDEELAAKYPYK 401 (418)
T ss_dssp CCCHHHHTTSCCC
T ss_pred ccCHHHHHhccCC
Confidence 9999999999764
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-70 Score=557.56 Aligned_cols=346 Identities=17% Similarity=0.176 Sum_probs=306.0
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
.|||++|+++.+.- + ..+.++|||+|++|++||||+.+.. +.+.+ ...+++ +.|.|+|+++
T Consensus 26 ~mkIt~v~~~~~~~----------~---~~~~v~V~v~td~Gi~G~GE~~~~~--~~~~~---~~~i~~~l~p~LiG~dp 87 (422)
T 3tji_A 26 PVIIKNIECFITRP----------D---RHNLVTVRVTTEQGITGHGCATFQQ--RPLAV---KTLVDEYLQPLMIGRDA 87 (422)
T ss_dssp CCBEEEEEEEEECS----------S---SSCEEEEEEEETTSCCEEEECCCTT--SHHHH---HHHHHHTHHHHHTTSBT
T ss_pred CcEEEEEEEEEEcC----------C---CccEEEEEEEECCCCEEEEeccCCC--CHHHH---HHHHHHHHHHHhCCCCc
Confidence 59999999987631 0 1267999999999999999987532 23332 233455 8899999999
Q ss_pred CCHHHHHHHHHhhC--CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
.+++.+|+.|.+.. .+. ...+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.++++++++
T Consensus 88 ~~ie~~~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 167 (422)
T 3tji_A 88 NNIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETLEALFASVDALIA 167 (422)
T ss_dssp TCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999998642 222 23578999999999999999999999999997 568999988888899999999999999
Q ss_pred cCCCEEEEecCCC------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 200 QGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 200 ~G~~~~KiKvG~~------------------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+||++||+|+|.. ++.|+++|++||++ |+++.|++|+|++|++++|+++++.|++
T Consensus 168 ~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~ 247 (422)
T 3tji_A 168 QGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEP 247 (422)
T ss_dssp TTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred cCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999842 56899999999998 8999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
+++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 248 ~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~lA~ 321 (422)
T 3tji_A 248 FQP--YFIEDILPPQQSAWLEQVRQ----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQ 321 (422)
T ss_dssp GCC--SEEECCSCGGGGGGHHHHHH----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHH
T ss_pred hCC--CeEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 997 49999999999999999875 68999999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 334 ASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 334 ~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
++|+++++|++. +|+|++++++||++++||+.++|+..+..+.++++.+++.++||++.+|++||||+++|++++++|.
T Consensus 322 a~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~ 401 (422)
T 3tji_A 322 AFGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAAIQEFIPRSATTNDVFPGAPEVKEGFVYPPVQPGIGVGFNEALALAHP 401 (422)
T ss_dssp HTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSCCCCCHHHHHTSC
T ss_pred HcCCEEEecCCCCccHHHHHHHHHHHHhCCCCceEeccCcchhhhhccCCCceeECCEEECCCCCcCCCCcCHHHHHhcc
Confidence 999999999996 7999999999999999999998887644345677788889999999999999999999999999998
Q ss_pred cc
Q 014886 413 QT 414 (416)
Q Consensus 413 ~~ 414 (416)
..
T Consensus 402 ~~ 403 (422)
T 3tji_A 402 VL 403 (422)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=554.23 Aligned_cols=351 Identities=17% Similarity=0.198 Sum_probs=301.9
Q ss_pred eeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH------HHHHHH
Q 014886 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEACE 116 (416)
Q Consensus 43 ~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~~ 116 (416)
.+.|||++|+++++++|+ +...++.++|||+|++|++||||+.+.+ +.....+.. ++.+.|
T Consensus 7 ~~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~p 73 (394)
T 3mkc_A 7 PAVAPIKSIEFIPVNYQA---------SNWSQNTVVVKVTDENGVYGLGEADGSP----DAILAYANIETEHKWLTNITE 73 (394)
T ss_dssp TTCCCEEEEEEEEEEEC-------------CEEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCTTT
T ss_pred CCCCeEEEEEEEEEecCC---------CCCCccEEEEEEEECCCCeEEEEecCcH----HHHHHHHhcccchhhHHHHHH
Confidence 356999999999999997 2345689999999999999999997532 211111110 012779
Q ss_pred HHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec--C-C--C
Q 014886 117 VLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--I-V--S 186 (416)
Q Consensus 117 ~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~--~-~--~ 186 (416)
.|+|++|.+++.+|+.|.+.. ++.....|+||||||||||+||.+|+|||+||||+ ++++++|++++ . . +
T Consensus 74 ~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~ 153 (394)
T 3mkc_A 74 KAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAIPVDAS 153 (394)
T ss_dssp TTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEECCEEECCCSCC-CCC
T ss_pred HhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEecCCcCCCCcc
Confidence 999999999999999997642 12223568999999999999999999999999997 46899998876 2 2 3
Q ss_pred HH----HHHHHHHHHHHcCCCEEEE-ecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHhCC
Q 014886 187 PA----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYEMG 256 (416)
Q Consensus 187 ~~----~~~~~~~~~~~~G~~~~Ki-KvG---~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w-~~~~A~~~~~~L~~~~ 256 (416)
++ ++.+++++++++||++||+ |+| .++++|+++|++||++ |+++.|++|+|++| +.++|+++++.|++++
T Consensus 154 ~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~ 233 (394)
T 3mkc_A 154 LDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLE 233 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGC
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcC
Confidence 44 5667889999999999999 999 6799999999999998 89999999999999 9999999999999999
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHc
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS 335 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~ 335 (416)
+ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 234 i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~ 307 (394)
T 3mkc_A 234 L--YFAEATLQHDDLSGHAKLVE----NTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATAN 307 (394)
T ss_dssp C--SEEESCSCTTCHHHHHHHHH----HCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHT
T ss_pred C--eEEECCCCchhHHHHHHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999875 68999999999999999999999999999999999998 99999999999999
Q ss_pred CCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCc----ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 336 gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
|+++++|++ +++|+.++++||++++||+.++|++.+. .+.++++.+++.++||++.+|++||||+++|++++++|
T Consensus 308 gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~ 386 (394)
T 3mkc_A 308 NVQVMPHNW-KTGITSAAAIHYQFAVGNAPYFEYVHPEFCDGELRKYLVTPEAELVDGGFAKPTAPGLGIDLNQEFLASL 386 (394)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHHTCCSSCCEECCGGGCCCHHHHHSEECCCCCBTTBEECCCSSBTCCEECHHHHHTC
T ss_pred CCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEeeccccccchhHHhhccCCCcccCCEEECCCCCCCCceeCHHHHHhh
Confidence 999999998 9999999999999999999999987653 23356677788999999999999999999999999998
Q ss_pred hc
Q 014886 412 LQ 413 (416)
Q Consensus 412 ~~ 413 (416)
..
T Consensus 387 ~~ 388 (394)
T 3mkc_A 387 EG 388 (394)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-70 Score=553.66 Aligned_cols=346 Identities=18% Similarity=0.212 Sum_probs=305.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
..|||++|+++.+. | .++.++|||+|++|++||||+.+.. ..+. +...+++ +.|.|+|++
T Consensus 21 ~~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~d 81 (424)
T 3v3w_A 21 QSMKIVDAKVIVTC-----P---------GRNFVTLKIVTDQGIYGIGDATLNG--REKS---VVSYLEDYLIPVLIGRD 81 (424)
T ss_dssp --CCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTHHHHHTTSC
T ss_pred CCCEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhcCCC
Confidence 45999999998763 1 1367999999999999999986532 2222 2333455 899999999
Q ss_pred CCCHHHHHHHHHhhC--C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~--~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (416)
|.+++.+|+.|.+.. . |....+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.+++++++
T Consensus 82 p~~ie~i~~~~~~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 161 (424)
T 3v3w_A 82 PQQIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAK 161 (424)
T ss_dssp TTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcCCCceeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999997642 2 2223568999999999999999999999999997 56899999888889999999999999
Q ss_pred HcCCCEEEEecCC---------------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHH
Q 014886 199 KQGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (416)
Q Consensus 199 ~~G~~~~KiKvG~---------------------------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~ 244 (416)
++||++||+|+|. +++.|+++|++||++ |+++.|++|+|++|+.++
T Consensus 162 ~~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~ 241 (424)
T 3v3w_A 162 DKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIE 241 (424)
T ss_dssp HTTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHH
T ss_pred HcCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHH
Confidence 9999999999983 156899999999998 899999999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++
T Consensus 242 A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit 315 (424)
T 3v3w_A 242 AARLGKALEPYHL--FWMEDAVPAENQESFKLIRQ----HTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGIS 315 (424)
T ss_dssp HHHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHHhcCC--CEEECCCChHhHHHHHHHHh----hCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHH
Confidence 9999999999997 49999999999999999875 68999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
++++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.++++.+++.++||++.+|++||||++
T Consensus 316 ~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve 395 (424)
T 3v3w_A 316 QMRRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAYTFNDGYFTPGEKPGHGVD 395 (424)
T ss_dssp HHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBC
T ss_pred HHHHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCcc
Confidence 9999999999999999999997 699999999999999999999998765444567788889999999999999999999
Q ss_pred cChhhHHhhhcc
Q 014886 403 LHWDNIAWGLQT 414 (416)
Q Consensus 403 ld~~~l~~~~~~ 414 (416)
+|++++++|...
T Consensus 396 ld~~~l~~~~~~ 407 (424)
T 3v3w_A 396 IDEKLAAQYPYK 407 (424)
T ss_dssp CCHHHHTTSCCC
T ss_pred cCHHHHHhccCC
Confidence 999999999754
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-70 Score=546.70 Aligned_cols=358 Identities=23% Similarity=0.306 Sum_probs=314.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g 120 (416)
|+|||++|+++++++|++.||+++.++.+.++.++|+|+| +|++||||+.+. +.|++|++..+...+++ +.|.|+|
T Consensus 6 ~~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g 84 (375)
T 1r0m_A 6 RMFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILG 84 (375)
T ss_dssp CCEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTT
T ss_pred cccEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHcC
Confidence 6699999999999999999999999999999999999999 599999999865 56778887766666665 7899999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC-CCHHHHHHHHHHHHH
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRK 199 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~-~~~~~~~~~~~~~~~ 199 (416)
+++.+++.+++.+.. +.|+ ..+++||||||||++||..|+|+|+||||.+++++++++++. .+++++.+.++++++
T Consensus 85 ~d~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~ 161 (375)
T 1r0m_A 85 QTFANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVE 161 (375)
T ss_dssp CEESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCCHHHHHHHHHHHHH
Confidence 999999888876643 4443 458999999999999999999999999998778888888876 589999999999999
Q ss_pred cCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 200 QGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 200 ~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
+||+++|+|++ +++|+++|++||++.+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 162 ~G~~~iKik~~--~~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~ 236 (375)
T 1r0m_A 162 QGYRRIKLKIK--PGWDVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDL--TYIEQPLAWDDLVDHAELAR 236 (375)
T ss_dssp TTCSCEEEECB--TTBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCC--SCEECCSCTTCSHHHHHHHH
T ss_pred hcccEEEEecC--hHHHHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH
Confidence 99999999996 47899999999997789999999999999999 999999999997 49999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++++|+++.++++|++
T Consensus 237 ----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 312 (375)
T 1r0m_A 237 ----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS 312 (375)
T ss_dssp ----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT
T ss_pred ----hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH
Confidence 67999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 359 AGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 359 aa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+++++.+ +|++++. .+.+|++.+++.++||++.+|++||||+++|++.+++|....
T Consensus 313 -a~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 370 (375)
T 1r0m_A 313 -TLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLATVTEAQ 370 (375)
T ss_dssp -TSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHHHHTEEEE
T ss_pred -cCCCCCcccccCCchhhhhhhcccCCceEECCEEECCCCCcCCCccCHHHHhhheeee
Confidence 9999888 8887652 356788888889999999999999999999999999997653
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-70 Score=554.56 Aligned_cols=345 Identities=17% Similarity=0.201 Sum_probs=305.6
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
.|||++|+++.+.- .++.++|||+|++|++||||+.+.. ..+. +...+++ +.|.|+|++|
T Consensus 23 ~mkIt~v~~~~~~~--------------~~~~v~V~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~dp 83 (425)
T 3vcn_A 23 MLKIIDAKVIVTCP--------------GRNFVTLKITTEDGITGVGDATLNG--RELS---VVSFLQDHMVPSLIGRDA 83 (425)
T ss_dssp CCBEEEEEEEEECS--------------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTTHHHHTTCBT
T ss_pred CCEEEEEEEEEEcC--------------CCcEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhCCCCh
Confidence 58999999976531 1367999999999999999986532 2222 2333454 7899999999
Q ss_pred CCHHHHHHHHHhhC--C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
.+++.+|+.|.+.. . |....+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.++++++++
T Consensus 84 ~~ie~i~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 163 (425)
T 3vcn_A 84 HQIEDIWQFFYRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIEDTIAEAVKYKA 163 (425)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSSSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999997642 2 2223568999999999999999999999999997 578999998888899999999999999
Q ss_pred cCCCEEEEecCC----------------C-----------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHH
Q 014886 200 QGFTTLKLKVGK----------------N-----------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 200 ~G~~~~KiKvG~----------------~-----------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A 245 (416)
+||++||+|+|. + ++.|+++|++||++ |+++.|++|+|++|++++|
T Consensus 164 ~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A 243 (425)
T 3vcn_A 164 MGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEA 243 (425)
T ss_dssp TTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence 999999999983 0 46789999999998 8999999999999999999
Q ss_pred HHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHH
Q 014886 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (416)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~ 324 (416)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| +++
T Consensus 244 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 317 (425)
T 3vcn_A 244 ARLGKDLEPYRL--FWLEDSVPAENQAGFRLIRQ----HTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITN 317 (425)
T ss_dssp HHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEECCCChhhHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHH
Confidence 999999999997 49999999999999999875 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCccccc
Q 014886 325 ALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (416)
Q Consensus 325 ~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGiel 403 (416)
+++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.++++.+++.++||++.+|++||||+|+
T Consensus 318 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 397 (425)
T 3vcn_A 318 LKKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFGLQEYMRHTPETDAVFPHAYTFSDGMLHPGDKPGLGVDI 397 (425)
T ss_dssp HHHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBCCEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCC
T ss_pred HHHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCceEeecCcchhhhhhcCCCceeeCCEEECCCCCCCCCcC
Confidence 999999999999999999998 6999999999999999999999987654445677888899999999999999999999
Q ss_pred ChhhHHhhhcc
Q 014886 404 HWDNIAWGLQT 414 (416)
Q Consensus 404 d~~~l~~~~~~ 414 (416)
|++++++|...
T Consensus 398 d~~~l~~~~~~ 408 (425)
T 3vcn_A 398 DEDLAAKHPYK 408 (425)
T ss_dssp CHHHHTTSCCC
T ss_pred CHHHHHhCcCC
Confidence 99999999764
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-69 Score=540.29 Aligned_cols=355 Identities=24% Similarity=0.356 Sum_probs=323.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+|++| +||||+.+. +.+++|++..+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 79 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999 999999865 55778887766666665 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC-CCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+++.+.. +.|+ ..|++||||||||++||..|+|+|+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (368)
T 1sjd_A 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEG 156 (368)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCCSEEEBEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-hcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCccceEEeeCCCCHHHHHHHHHHHHHhC
Confidence 9999999887743 4443 458999999999999999999999999998778888888876 48999999999999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
|+.+|+|++ ++.|+++|++||++ |+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 157 f~~vKik~~--~~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~- 230 (368)
T 1sjd_A 157 YVRIKLKIE--PGWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGL--LLIEQPLEEEDVLGHAELAR- 230 (368)
T ss_dssp CSEEEEECB--TTBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCC--SEEECCSCTTCHHHHHHHHT-
T ss_pred ccEEEEecC--chhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCC--CeEeCCCChhhHHHHHHHHH-
Confidence 999999996 47899999999997 899999999999999999 999999999997 49999999999999999874
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaa 359 (416)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|++++++++++|+++.++++||+
T Consensus 231 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla- 306 (368)
T 1sjd_A 231 ---RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALA- 306 (368)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCccccHHHHHHHHHHH-
Confidence 78999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred cCCCCce-ecCcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 360 GLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 360 a~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+++++.+ +|++++ ..+.+|+ .+++.++||++.+|++||||+++|++.+++|...+
T Consensus 307 a~~~~~~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 363 (368)
T 1sjd_A 307 SLPNFTLPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAK 363 (368)
T ss_dssp TSTTBCSCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTSCCCCHHHHHHHEEEE
T ss_pred cCCCCCcccccCCchhhhhhcC-CCCceEECCEEECCCCCcCCceeCHHHHHhheeee
Confidence 9999888 888765 2356777 77889999999999999999999999999997653
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-69 Score=543.31 Aligned_cols=356 Identities=24% Similarity=0.342 Sum_probs=323.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+| +|.+||||+.+. |.|++|++..+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRVLGRD 79 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHHTTCB
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999 599999999865 56778887766666665 789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC-CCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+++.+.. +.|+ +.+++||||||||++||..|+|+|+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (369)
T 2zc8_A 80 LPNPEALREALAP-FRGN--PMAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEG 156 (369)
T ss_dssp CSSHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeceEEecCCCCHHHHHHHHHHHHHhh
Confidence 9999999888743 4443 458999999999999999999999999998778888888777 58999999999999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
|+++|+|++ +++|+++|++||++.+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 157 ~~~iKik~~--~~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 229 (369)
T 2zc8_A 157 YRRIKLKIK--PGWDYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRL--DYIEQPLAYDDLLDHAKLQR-- 229 (369)
T ss_dssp CSCEEEECB--TTBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred hheeeeecC--hhHHHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh--
Confidence 999999996 47899999999997789999999999999999 999999999997 49999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++++|+++.++++||+ +
T Consensus 230 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 306 (369)
T 2zc8_A 230 --ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLA-T 306 (369)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 67999999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred CCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 361 LGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 361 ~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
++++.+ +|++.+. .+.+|++.+++.++||++.+|++||||+++|++++++|...+
T Consensus 307 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 363 (369)
T 2zc8_A 307 LPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGVHLKLPFVERVTLWQ 363 (369)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTCCCBCHHHHHHTEEEE
T ss_pred CCCCCcccccCCcchhhhhccccCCcEEECCEEECCCCCcCCcccCHHHHhhceEEE
Confidence 999888 8887652 356788888889999999999999999999999999997653
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=552.20 Aligned_cols=349 Identities=17% Similarity=0.227 Sum_probs=305.9
Q ss_pred EEEeEEEEEEEEeccccceeecCceeee-eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~-~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
|||++|+++++++| ..||.++.+.... .+.++|||+||+ ++||||+.. .+.. ...++.+.|.|+|+++.
T Consensus 27 mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g-----~~~~---~~~i~~l~p~LiG~d~~ 96 (445)
T 3va8_A 27 SIIKEIVITPVAFH-DMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYG-----DSAH---LDRLQKAADKIKGLSVY 96 (445)
T ss_dssp TBCCEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEEC-----CHHH---HHHHHHHHHHHTTSBTT
T ss_pred CEEEEEEEEEEecC-CcccccccCcccCceeEEEEEEEECC-CEEEEecCC-----cHHH---HHHHHHHHHHHCCCChh
Confidence 89999999999999 8999998876433 567899999999 999999853 2322 22346689999999999
Q ss_pred CHHHHHHHHHhhCCCC----------------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec----
Q 014886 125 ALGSVFGVVAGLLPGH----------------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---- 183 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~----------------~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~---- 183 (416)
+++.+|+.|.+.+.++ ....|++|||||||||+||.+|+|||+||||+ +++|++|.++.
T Consensus 97 ~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~y~~~ 176 (445)
T 3va8_A 97 STNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKWG 176 (445)
T ss_dssp CHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEBCEEEECBCS
T ss_pred HHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccccc
Confidence 9999999998753221 23468999999999999999999999999997 67899865431
Q ss_pred ------------CCCHHHHHHHHHHHHHc-CCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH
Q 014886 184 ------------IVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 184 ------------~~~~~~~~~~~~~~~~~-G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
..+++++++++++++++ ||++||+|+|. ++++|+++|++||++.|++.|++|+|++|++++|++++
T Consensus 177 ~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~~ 256 (445)
T 3va8_A 177 GHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVA 256 (445)
T ss_dssp SSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHHH
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHHH
Confidence 26899999999999875 99999999995 88999999999999889999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++ + .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++
T Consensus 257 ~~L~~~-l--~~iEeP~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGitea~ki 327 (445)
T 3va8_A 257 KELEGI-V--EYLEDPAG--EIEGMAAVAK----EASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTL 327 (445)
T ss_dssp HHTTTT-C--SEEESCBS--HHHHHHHHHT----TCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhhh-c--CeEeecCc--CHHHHHHHHH----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHHHHHHH
Confidence 999998 7 49999984 7999999874 78999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-cCcCCcccc-cCCC-CcceeEeCcEEEcCCCCCcccccCh
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLS-EDPV-LDGYEVSGAVYKFTNARGHGGFLHW 405 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~-e~~~p~~~~-~d~~-~~~~~~~~G~~~~p~~PGlGield~ 405 (416)
+++|+++|+++++|++.+++|++++++||++++||+.+. +.+.|+... +|++ .+++.++||++.+|++||||||+|+
T Consensus 328 a~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~~~~d~~~~~~~~~~d~~~~~~~~~~~G~i~vp~~PGLGveld~ 407 (445)
T 3va8_A 328 ASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELDR 407 (445)
T ss_dssp HHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGSCTTCCSBCTTSCCEETTEEECCCSSBTSCCBCH
T ss_pred HHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCceeeeccchhhhcccccccCCCceEECCEEECCCCCcCCCccCH
Confidence 999999999999999999999999999999999998774 444465442 3555 5678999999999999999999999
Q ss_pred hhHHhhhc
Q 014886 406 DNIAWGLQ 413 (416)
Q Consensus 406 ~~l~~~~~ 413 (416)
+++++|.+
T Consensus 408 ~~l~~~~~ 415 (445)
T 3va8_A 408 ERLAKLHQ 415 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-69 Score=535.08 Aligned_cols=342 Identities=34% Similarity=0.510 Sum_probs=317.9
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
+|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.+++|+...+...++++.|.|+|+++.
T Consensus 1 MmkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~d~~ 80 (345)
T 2zad_A 1 MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVR 80 (345)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTCBGG
T ss_pred CCEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCCChh
Confidence 47999999999999999999999999999999999999999999999998876666777766666666789999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
+++.+|+.| ....++ +++++||||||||+.||..|+|+|+||||.++++++|.+++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l-~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 157 (345)
T 2zad_A 81 NYARIFEIT-DRLFGF--PSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRV 157 (345)
T ss_dssp GHHHHHHHH-TTCTTS--HHHHHHHHHHHHHHHHHHHTSCHHHHTTCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred hHHHHHHHH-HHhccc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCcCE
Confidence 999999999 444333 46899999999999999999999999999778999999998889999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce--eeecCCCCCCHHHHHHhHHhhh
Q 014886 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV--LFEQPVHRDDWEGLGHVSHIAK 282 (416)
Q Consensus 205 ~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~--~iEeP~~~~d~~~~~~l~~~~r 282 (416)
+|+|+|.++++|+++|++||++++++.|++|+|++|+.++|+++++.|+++++ . |||||++++|++++++|++
T Consensus 158 iKik~g~~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~~~iE~P~~~~~~~~~~~l~~--- 232 (345)
T 2zad_A 158 IKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGI--DIAVYEQPVRREDIEGLKFVRF--- 232 (345)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTC--CCSEEECCSCTTCHHHHHHHHH---
T ss_pred EEEeecCCHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeeeCCCCcccHHHHHHHHH---
Confidence 99999988999999999999998899999999999999999999999999986 7 9999999999999999975
Q ss_pred ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 283 ~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
++++||++||+++++++++++++.+++|++|+|+++ | ++++++++++|+++|+++++||+.||++++++++|+++++
T Consensus 233 -~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hlaa~~ 310 (345)
T 2zad_A 233 -HSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGT 310 (345)
T ss_dssp -HSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred -hCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHcC
Confidence 679999999999999999999999999999999999 9 9999999999999999999999999999999999999999
Q ss_pred CCCceecCcCCcccccCCCCcceeEeCcEEEcCCC
Q 014886 362 GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 396 (416)
Q Consensus 362 ~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~ 396 (416)
||+.++|+++|+.+.+|++.+++.++||++.+|++
T Consensus 311 ~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~ 345 (345)
T 2zad_A 311 GAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345 (345)
T ss_dssp CCCSEECCCGGGGBSSCCCCCSSEEETTEEECCCC
T ss_pred CCCceeecCCchhhhhccccCCcEEECCEEeCCCC
Confidence 99999999988767788888889999999999974
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=550.70 Aligned_cols=345 Identities=16% Similarity=0.170 Sum_probs=304.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
|||++|+++.+.- + ..+.++|||+|++ |++||||+.+.+ ..+. +...+++ +.|.|+|++|
T Consensus 27 mkIt~v~~~~~~~----------~---~~~~v~V~v~Td~~Gi~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~dp 88 (440)
T 3t6c_A 27 LFITNVKTILTAP----------G---GIDLVVVKIETNEPGLYGLGCATFTQ--RIYA---VQSAIDEYLAPFLIGKDP 88 (440)
T ss_dssp CCEEEEEEEEECT----------T---SSCEEEEEEEESSTTCEEEEECCCGG--GHHH---HHHHHHTTHHHHHTTCCT
T ss_pred CEEEEEEEEEECC----------C---CceEEEEEEEEcCCCCEEEEeeccCC--CHHH---HHHHHHHHHHHHHcCCCh
Confidence 8999999987631 0 1267999999999 999999987532 2232 2233455 8899999999
Q ss_pred CCHHHHHHHHHhhC--CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
.+++.+|+.|.+.. .+. ...+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.++++++++
T Consensus 89 ~~ie~i~~~~~~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 168 (440)
T 3t6c_A 89 ARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKME 168 (440)
T ss_dssp TCHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999997642 222 23568999999999999999999999999997 568999998888899999999999999
Q ss_pred cCCCEEEEecCC-C----------------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCC
Q 014886 200 QGFTTLKLKVGK-N----------------------------------------LKEDIEVLRAIRAV-HPDSSFILDAN 237 (416)
Q Consensus 200 ~G~~~~KiKvG~-~----------------------------------------~~~d~~~v~avr~~-g~~~~L~vDaN 237 (416)
+||+++|+|+|. + ++.|+++|++||++ |+++.|++|+|
T Consensus 169 ~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~d~~L~vDaN 248 (440)
T 3t6c_A 169 EGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAH 248 (440)
T ss_dssp TTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred cCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 999999999982 1 46899999999998 89999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|+
T Consensus 249 ~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 249 ERITPINAIHMAKALEPYQL--FFLEDPVAPENTEWLKMLRQ----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp TCSCHHHHHHHHHHTGGGCC--SEEECSSCGGGGGGHHHHHH----HCCSCEEECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred CCCCHHHHHHHHHHhhhcCC--CEEECCCChhhHHHHHHHHh----hcCCCEEeCcccCCHHHHHHHHHcCCccceeech
Confidence 99999999999999999997 59999999999999999875 6899999999999999999999999999999999
Q ss_pred CCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCC
Q 014886 318 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395 (416)
Q Consensus 318 ~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~ 395 (416)
+++| ++++++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+....++++.+++.++||++.+|+
T Consensus 323 ~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~~~E~~~~~~~~~~~~~~~~~~~~G~i~vp~ 402 (440)
T 3t6c_A 323 SSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVND 402 (440)
T ss_dssp GGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCEEETTEEECCC
T ss_pred hhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCceEeecCcchhhHhhcCCCceecCCEEECCC
Confidence 9997 999999999999999999999986 79999999999999999999888876433346777888999999999999
Q ss_pred CCCcccccChhhHHhhhcc
Q 014886 396 ARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 396 ~PGlGield~~~l~~~~~~ 414 (416)
+||||+|+|++++++|...
T Consensus 403 ~PGLGveld~~~l~~~~~~ 421 (440)
T 3t6c_A 403 KPGLGIDINEALAAKFPCE 421 (440)
T ss_dssp CSBTSCCCCHHHHTTSCCC
T ss_pred CCCCCcccCHHHHHhcccc
Confidence 9999999999999999765
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-70 Score=553.34 Aligned_cols=346 Identities=15% Similarity=0.204 Sum_probs=303.8
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
.++|++|+++.+.- ..++.++|||+||+|++||||+.+. ++++.+..+ +++ ++|.|+|+||
T Consensus 25 ~~~It~v~~~~v~~-------------~~~~~vlV~v~Td~G~~G~GEa~~~--~~~~~~~~~---i~~~lap~LiG~dp 86 (421)
T 4hnl_A 25 PTIITDVKSFAIKP-------------DRHNLVVVKVETNKGISGLGCSTFQ--FRPLAVKTV---VDEYLRPLLMGRDA 86 (421)
T ss_dssp CCBEEEEEEEEECS-------------SSSCEEEEEEEETTSCCEEEECCCT--TSHHHHHHH---HHHTHHHHHTTCBT
T ss_pred CceEEEEEEEEECC-------------CCceEEEEEEEECCCCEEEEeccCC--CCHHHHHHH---HHHHHHHHHCCCCh
Confidence 46799999888641 1236789999999999999998642 334443333 343 7899999999
Q ss_pred CCHHHHHHHHHhhC--C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 124 ~~~~~~~~~l~~~~--~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
.+++.+|+.|.... . +.....|++||||||||++||.+|+|||+||||+ ++++++|.+....+++++.++++++++
T Consensus 87 ~~ie~i~~~~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~ 166 (421)
T 4hnl_A 87 NEIEDIWQVMNVNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKARTAIPAYTHAVADNLDDLYHEIDRFLA 166 (421)
T ss_dssp TCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCccCcccceecccCCCCHHHHHHHHHHHHH
Confidence 99999999986532 2 2223468999999999999999999999999997 458999999888899999999999999
Q ss_pred cCCCEEEEecCC------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 200 QGFTTLKLKVGK------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 200 ~G~~~~KiKvG~------------------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+||+++|+|+|. +++.|+++|+++|++ |+++.|++|+|++|++++|+++++.|++
T Consensus 167 ~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~ 246 (421)
T 4hnl_A 167 AGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEP 246 (421)
T ss_dssp TTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred hhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhh
Confidence 999999999983 257899999999998 8999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
+++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 247 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~ 320 (421)
T 4hnl_A 247 YQL--FFLEDILPPDQSHWLTQLRS----QSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCD 320 (421)
T ss_dssp GCC--SEEECCSCGGGGGGHHHHHT----TCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHH
T ss_pred hhh--cccccCCcccchHHHHHHHh----cCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Confidence 997 59999999999999999974 78999999999999999999999999999999999997 999999999999
Q ss_pred HcCCcEEEccCCc-hHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 334 ASGLNLMIGGMVE-TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 334 ~~gi~~~~~~~~e-s~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
++|+++++|++.+ |+|+.++++|+++++||+.+.|+.....+.++++.+++.++||++.+|++||||||+|+|+|++|.
T Consensus 321 ~~gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGveld~~~l~~y~ 400 (421)
T 4hnl_A 321 AMGVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEKSGIGITFDEEAAADFP 400 (421)
T ss_dssp HTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHEECCCCCBTTEECCCCSSBSCCEECHHHHTTCB
T ss_pred HCCCeEEEeCCcchhHHHHHHHHHHHHhCCCCccccccCcchhhhhhccCCCeEECCEEECCCCCCCCeeECHHHHhhcc
Confidence 9999999999986 789999999999999999888765433334567777889999999999999999999999999997
Q ss_pred cc
Q 014886 413 QT 414 (416)
Q Consensus 413 ~~ 414 (416)
..
T Consensus 401 ~~ 402 (421)
T 4hnl_A 401 VV 402 (421)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-69 Score=540.45 Aligned_cols=354 Identities=24% Similarity=0.302 Sum_probs=320.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcc-cHHHHHHHHHH-HHHHHhCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e-~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+. ++| +. +...+++ +.|.|+|+++
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~-----~~~~~~--~~~~i~~~l~~~l~g~d~ 76 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECT-----VAPDQT--GTAAILYRLAKHLVGHSP 76 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEE-----CTTCHH--HHHHHHHHHHGGGTTSCG
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccC-----CCchHH--HHHHHHHHHHHHHCCCCh
Confidence 8999999999999999999999999999999999999999999999997 134 32 3344553 8899999999
Q ss_pred CCHHHHHHH-HHhh-C-CCC----hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHH
Q 014886 124 MALGSVFGV-VAGL-L-PGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELAS 195 (416)
Q Consensus 124 ~~~~~~~~~-l~~~-~-~g~----~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~ 195 (416)
.+++.+|+. |.+. . .|. ..++|++||||||||++||..|+|+|+||||. ++++++|++++..+++++.+.++
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~ 156 (384)
T 2pgw_A 77 HDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAA 156 (384)
T ss_dssp GGHHHHHHHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCSSSEEEBCEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 999999998 8442 1 221 13578999999999999999999999999997 67999999988889999999999
Q ss_pred HHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHH
Q 014886 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 196 ~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (416)
+++++||+.||+|+|.+++.|+++|++||++.+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++++
T Consensus 157 ~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~ 234 (384)
T 2pgw_A 157 VGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDI--EFIEQPTVSWSIPAMA 234 (384)
T ss_dssp HHHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHH
T ss_pred HHHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCC--CEEeCCCChhhHHHHH
Confidence 99999999999999988999999999999983399999999999999999999999999997 4999999999999999
Q ss_pred HhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~ 354 (416)
+|++ ++++||++||++++++++.++++.+++|++++|++++| ++++++++++|+++|+++++|+|++|+|+++++
T Consensus 235 ~l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~ 310 (384)
T 2pgw_A 235 HVRE----KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAE 310 (384)
T ss_dssp HHHH----HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCHHHHHHH
T ss_pred HHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCHHHHHHH
Confidence 9975 67999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ec-CcCCcccccCCCCc-ceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 355 GHLSAGLGCFKF-ID-LDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 355 ~hlaaa~~~~~~-~e-~~~p~~~~~d~~~~-~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+|+++++|++.+ ++ +++| +.+|++.+ ++.++||++.+|++||||+++|++++++|...
T Consensus 311 ~hlaaa~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 371 (384)
T 2pgw_A 311 HHIGLAIPNLDDGNQIMWQL--VQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGR 371 (384)
T ss_dssp HHHHHHCSSBCSSBCCCGGG--BSSCSEEESCCCCBTTEEECCCSSBTCCEECHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccccCc--hhhhhccCCCceEECCEEECCCCCcCCCcCCHHHHHHhhhh
Confidence 999999999876 56 5566 35788877 88899999999999999999999999999764
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-68 Score=536.47 Aligned_cols=350 Identities=21% Similarity=0.249 Sum_probs=314.2
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
.|||++|+++++++|++.||+++.++++.++.++|+|+|++|.+||||+.. .++ .+...+++ ++|.|+|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~--~~~~~i~~~l~~~l~G~d~ 75 (382)
T 2gdq_A 3 LVKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVD-----WLP--ALHVGFTKRIIPFLLGKQA 75 (382)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECS-----CHH--HHHHHHHHTHHHHHTTSBT
T ss_pred CCEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeecC-----chH--HHHHHHHHHHHHHhcCCCc
Confidence 399999999999999999999999999999999999999999999999972 122 23344555 8899999999
Q ss_pred CCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec--CCCH---HHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--IVSP---AEAAELASKY 197 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~--~~~~---~~~~~~~~~~ 197 (416)
.+++.+|+.|.+.. +++++||||||||++||..|+|+|+||||. ++++|+|.+++ ..++ +++.+.++++
T Consensus 76 ~~~~~~~~~l~~~~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~g~~~~~~~~~e~~~~~a~~~ 150 (382)
T 2gdq_A 76 GSRLSLVRTIQKWH-----QRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQ 150 (382)
T ss_dssp TCHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEECCCBCSSTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecccCCCcccHHHHHHHHHHH
Confidence 99999999986532 468999999999999999999999999997 67999997653 3678 9999999999
Q ss_pred HHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCceeeecCCCCCCHHHH
Q 014886 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGL 274 (416)
Q Consensus 198 ~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~ 274 (416)
+++||+.||+|+|. +++.|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++ ++ .|||||++++|++++
T Consensus 151 ~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~ 228 (382)
T 2gdq_A 151 LKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNI--GWLEEPLPFDQPQDY 228 (382)
T ss_dssp HTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCE--EEEECCSCSSCHHHH
T ss_pred HHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCC--eEEECCCCcccHHHH
Confidence 99999999999996 899999999999997 89999999999999999999999999999 86 599999999999999
Q ss_pred HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 014886 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 275 ~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a 353 (416)
++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++| +.+|++++++
T Consensus 229 ~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~es~i~~~a 303 (382)
T 2gdq_A 229 AMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAH-AYDGSLSRLY 303 (382)
T ss_dssp HHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECCC-CSSCSHHHHH
T ss_pred HHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHHHHH
Confidence 99874 78999999999999999999999999999999999998 999999999999999999999 8899999999
Q ss_pred HHHHHccCCCCc-e-ecCcCCcccccCCCCccee------EeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 354 AGHLSAGLGCFK-F-IDLDTPLLLSEDPVLDGYE------VSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 354 ~~hlaaa~~~~~-~-~e~~~p~~~~~d~~~~~~~------~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
++|++++++|+. + ++.++| +.+|++.+++. ++||++.+|++||||+++|++++++|....
T Consensus 304 ~l~laa~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 371 (382)
T 2gdq_A 304 ALFAQACLPPWSKMKNDHIEP--IEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIVNRYKWDG 371 (382)
T ss_dssp HHHHHHTSCCSSSCTTSCSCC--EEEECSSCGGGGGBCCCCBTTEEECCCSSBTSSCBCHHHHHHTBCCS
T ss_pred HHHHHHhCchHhhcccccccc--HHHHHhcccccccccccccCCEEECCCCCCCCceeCHHHHHhhhccC
Confidence 999999999832 1 123344 35677777888 899999999999999999999999998653
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-68 Score=530.48 Aligned_cols=348 Identities=20% Similarity=0.268 Sum_probs=314.4
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
.|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+ +++. .+...++ .+.|.|+|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~---~~~~-~~~~~i~~~l~~~l~g~d~ 78 (359)
T 1mdl_A 3 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT---PVAL-KSLKQLLDDMAAMIVNEPL 78 (359)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS---GGGH-HHHHHHHHHHHHHHTTSBS
T ss_pred CCEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC---CchH-HHHHHHHHHHHHHHCCCCc
Confidence 48999999999999999999999999999999999999999999999998754 3443 3444455 47899999999
Q ss_pred CCHHHHHHHHHhhCC--C--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLLP--G--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK 199 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~--g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (416)
.+++.+ +.|.+... + ...+++++||||||||++||..|+|+|+||||.++++|+|.+++..+++++.+.++++++
T Consensus 79 ~~~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~a~~~~~ 157 (359)
T 1mdl_A 79 APVSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAE 157 (359)
T ss_dssp CHHHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCCCCeeeeeecCCCCHHHHHHHHHHHHH
Confidence 999988 77765432 2 124579999999999999999999999999998888999988766788999999999999
Q ss_pred cCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 200 ~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
+||+.||+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|
T Consensus 158 ~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l 235 (359)
T 1mdl_A 158 LGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGV--TWIEEPTLQHDYEGHQRI 235 (359)
T ss_dssp TTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTC--SCEECCSCTTCHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEECCCChhhHHHHHHH
Confidence 999999999996 899999999999997 8999999999999999999999999999997 499999999999999999
Q ss_pred HHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ ++ +++|
T Consensus 236 ~~----~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~-~~-----a~~~ 305 (359)
T 1mdl_A 236 QS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLF-QE-----ISAH 305 (359)
T ss_dssp HH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBSC-HH-----HHHH
T ss_pred HH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeeccH-HH-----HHHH
Confidence 75 68999999999999999999999999999999999998 99999999999999999999986 33 8899
Q ss_pred HHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 357 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 357 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
++++++++.++|++ | +.+|++.+++.++||++.+|++||||+++|++.+++|.
T Consensus 306 laaa~~~~~~~e~~-~--~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~~~ 358 (359)
T 1mdl_A 306 LLAATPTAHWLERL-D--LAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYL 358 (359)
T ss_dssp HHHTCTTBCCEEEC-C--SSTTTBCCCSEEETTEEECCSSSBTCCCBCHHHHHHHB
T ss_pred HHHhCCCCcccccC-c--hhhhhccCCceeECCEEECCCCCCCCccCCHHHHHhcc
Confidence 99999999888887 5 36788888899999999999999999999999999986
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-68 Score=532.37 Aligned_cols=352 Identities=20% Similarity=0.281 Sum_probs=312.0
Q ss_pred EEEeEEEEEEEEeccccceeecCcee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~-~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
|||++|+++++++|++.||+++.+++ +.++.++|+|+|++|++||||+.+.+ .+.+ .+...++ .++|.|+|+++
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~g-~~~~---~~~~~i~~~l~~~l~G~d~ 77 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTVN-HGGA---AVATMVDKDLRGCLLGADA 77 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEES-SSHH---HHHHHHHHTTHHHHTTSCT
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCCC-CchH---HHHHHHHHHHHHHhcCCCc
Confidence 79999999999999999999999988 89999999999999999999998642 1222 2333343 37899999999
Q ss_pred CCHHHHHHHHHhhCCC----ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLLPG----HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY 197 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g----~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~ 197 (416)
.+++.+|+.|.+...+ ...++|++||||||||++||..|+|||+||||.++++++|.+.+. .+++++.+.++++
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~y~~~~~~~~~~e~~~~~a~~~ 157 (371)
T 2ovl_A 78 EQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRF 157 (371)
T ss_dssp TCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEEEEECCBTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCcCCCHHHHHHHHHHH
Confidence 9999999999764432 123578999999999999999999999999999889999988654 3899999999999
Q ss_pred HHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHH
Q 014886 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 198 ~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (416)
+++||+.||+|+|. +++.|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++++
T Consensus 158 ~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~ 235 (371)
T 2ovl_A 158 LAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL--HWIEEPTIPDDLVGNA 235 (371)
T ss_dssp HHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHH
T ss_pred HHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHH
Confidence 99999999999996 899999999999997 8999999999999999999999999999997 4999999999999999
Q ss_pred HhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~ 354 (416)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ ++
T Consensus 236 ~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~~~~------a~ 305 (371)
T 2ovl_A 236 RIVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHGVHD------LT 305 (371)
T ss_dssp HHHH----HHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECSCHH------HH
T ss_pred HHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccccHHH------HH
Confidence 9975 67899999999999999999999999999999999997 9999999999999999999999843 88
Q ss_pred HHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 355 GHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 355 ~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+|++++++++.++|++ ++ +..+++.+++.++||++.+|++||||+++|++++++|....
T Consensus 306 ~hlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 364 (371)
T 2ovl_A 306 VHALASVPHRTYMEAH-GF-GLHAYMAEPMAVTDGCVSAPDRPGHGVVLDFERLGRLAVGE 364 (371)
T ss_dssp HHHHTSCTTEEEEECC-----CGGGBSSCCCCBTTEEECCCSSBTCCCBCHHHHHTTBC--
T ss_pred HHHHhhCCCCcccccC-hH-HHHHhccCCCeeeCCEEECCCCCCCCCccCHHHHHhhhccc
Confidence 9999999999888875 21 34667778888999999999999999999999999998754
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-68 Score=539.82 Aligned_cols=341 Identities=17% Similarity=0.224 Sum_probs=296.6
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
+|||++|+++.+ | .+ .++|||+|++|++||||+.+.. +.+.+. ..++.+.|.|+|++|.
T Consensus 1 mMkIt~i~~~~~--~--~~------------~~~V~v~td~G~~G~GE~~~~g--~~~~~~---~~i~~l~p~liG~dp~ 59 (405)
T 3rr1_A 1 MVKITRLTTYRL--P--PR------------WMFLKVETDEGVTGWGEPVIEG--RARTVE---AAVHELSDYLIGQDPS 59 (405)
T ss_dssp CCCEEEEEEEEE--T--TT------------EEEEEEEETTSCEEEECCCCTT--CHHHHH---HHHHHHGGGTTTSCTT
T ss_pred CCeEEEEEEEEE--C--CC------------EEEEEEEECCCCEEEEeCCCCC--CHHHHH---HHHHHHHHHHCCCCcc
Confidence 489999999987 2 12 3899999999999999998642 233332 3345689999999999
Q ss_pred CHHHHHHHHHhh--CCCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHc
Q 014886 125 ALGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (416)
Q Consensus 125 ~~~~~~~~l~~~--~~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (416)
+++.+|+.|.+. ..|. ...+|+||||||||||+||.+|+|||+||||+ +++|++|.+++..+++++.+++++++++
T Consensus 60 ~~e~~~~~l~~~~~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 139 (405)
T 3rr1_A 60 RINDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPADVIAGMKALQAG 139 (405)
T ss_dssp CHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccccCceeeeEeCCCCCHHHHHHHHHHHHHc
Confidence 999999999873 2332 23568999999999999999999999999997 5689999999989999999999999999
Q ss_pred CCCEEEEecCC----------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCC
Q 014886 201 GFTTLKLKVGK----------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (416)
Q Consensus 201 G~~~~KiKvG~----------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (416)
||++||+ +|. ++++|+++|++||++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++++
T Consensus 140 G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~ 216 (405)
T 3rr1_A 140 GFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP--LFIEEPVLAE 216 (405)
T ss_dssp TCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC--SCEECSSCCS
T ss_pred CCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcc
Confidence 9999999 774 368899999999998 7999999999999999999999999999997 4999999999
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++
T Consensus 217 d~~~~~~l~~----~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~~-~s~ 291 (405)
T 3rr1_A 217 QAETYARLAA----HTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHCP-LGP 291 (405)
T ss_dssp STHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBCC-SCH
T ss_pred cHHHHHHHHh----cCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCCC-CcH
Confidence 9999999874 78999999999999999999999999999999999998 99999999999999999999987 799
Q ss_pred HHHHHHHHHHccCCCCceecCc--CCcccccCCCC-----cceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 349 LAMGFAGHLSAGLGCFKFIDLD--TPLLLSEDPVL-----DGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 349 ig~~a~~hlaaa~~~~~~~e~~--~p~~~~~d~~~-----~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
|++++++||++++||+.+.|+. .+..+..+++. ++++++||++.+|++||||+|+|++++++|...
T Consensus 292 i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~~~l~~~~~~ 364 (405)
T 3rr1_A 292 IALAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPPRLPGLGVDIDEALVIERSKE 364 (405)
T ss_dssp HHHHHHHHHHHHCTTBCCEEECC--------CGGGGBSCGGGGCEETTEECCCCSSBTSCCBCHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCceeeeeccccccccchhhhhhcccCCCceeeCCEEECCCCCcCCcccCHHHHHhhhcc
Confidence 9999999999999999776643 22222334443 367899999999999999999999999999764
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-69 Score=541.11 Aligned_cols=342 Identities=21% Similarity=0.243 Sum_probs=296.4
Q ss_pred eeEEEeEEEEEEEEeccccceeec--Ccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIA--TSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a--~~~~-~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
..|||++|+++++++|++.||.++ .|+. +.++.++|+|+|+ |++||||+.+.. +.+.|.|+|
T Consensus 10 ~~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~~--------------~~l~~~liG 74 (392)
T 3v5c_A 10 SDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHMT--------------PEWAEDVIG 74 (392)
T ss_dssp TTCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSCC--------------HHHHHTTTT
T ss_pred cCcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCcH--------------HHHHHHhCC
Confidence 358999999999999999999964 7776 6789999999999 999999998631 236789999
Q ss_pred CCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc-e-----eeeeEe-ecCC--------
Q 014886 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-T-----ITTDIT-IPIV-------- 185 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~-~-----v~~~~~-~~~~-------- 185 (416)
+++.++.. ..+.....|++|||||||||+||.+|+|||+||||+.+ . +++|.+ ++..
T Consensus 75 ~d~~~~~~--------~~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~r~~~~~v~v~~y~~~~~~~~~~~~~~~ 146 (392)
T 3v5c_A 75 RRLLDLFD--------DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADER 146 (392)
T ss_dssp CBGGGGBC--------TTSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCCSCCCCCEEEEEEEEEECBTTTTCCCHH
T ss_pred CCHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCcccccceEEEEEeecccccccccccc
Confidence 99876421 12223346899999999999999999999999999854 4 888864 3322
Q ss_pred -CHHHHHHHHHHHHHcCCCEEEEecCCC---------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 186 -SPAEAAELASKYRKQGFTTLKLKVGKN---------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 186 -~~~~~~~~~~~~~~~G~~~~KiKvG~~---------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+++++.+++++++++||++||+|+|.+ +++|+++|++||++ ||++.|++|+|++|++++|+++++.|++
T Consensus 147 ~~~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~ 226 (392)
T 3v5c_A 147 AAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSD 226 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhccc
Confidence 246778888999999999999999963 68999999999996 9999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~ 333 (416)
+++ .|||||++ +|++++++|++.++. .+++|||.||+++ ..+++++++.+++|++|+|+++.|++++++++++|+
T Consensus 227 ~~l--~~iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~GGitea~kia~~A~ 302 (392)
T 3v5c_A 227 VNL--YWLEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLD 302 (392)
T ss_dssp SCC--CEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHH
T ss_pred CCC--eEEeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 987 59999998 689999998752211 2689999999999 889999999999999999999944999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 334 ~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++|+++++||+ +++|++++++||++++||+.++|++.++ ..++..+++.++||++.+|++||||||+|++++++|..
T Consensus 303 ~~gv~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~--~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~~ 379 (392)
T 3v5c_A 303 AHGLRSAPHCY-GNAYGIYASGHLSAAVRNFEFVEYDDIT--IEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLIN 379 (392)
T ss_dssp HTTCEECCBCC-SCTHHHHHHHHHGGGCTTBCCEEECCEE--ETTEECTTCEEETTEEEECCSSBTSCEECHHHHHHHHH
T ss_pred HcCCeEEecCC-CcHHHHHHHHHHHHhCCCCceEecccch--hhhccCCCCeeECCEEECCCCCCCCccCCHHHHHhhhc
Confidence 99999999998 8999999999999999999999987654 24555678899999999999999999999999999987
Q ss_pred cC
Q 014886 414 TS 415 (416)
Q Consensus 414 ~~ 415 (416)
+.
T Consensus 380 ~~ 381 (392)
T 3v5c_A 380 RS 381 (392)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-68 Score=535.38 Aligned_cols=360 Identities=15% Similarity=0.205 Sum_probs=317.0
Q ss_pred ccCceeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHH
Q 014886 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118 (416)
Q Consensus 39 ~~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l 118 (416)
|+...|.|||++|+++.+. |++.|+.++. .++.++|+|+|++|++||||+.+.+ +..+++. ..+++++|.|
T Consensus 4 ~~~~~~~MkI~~i~~~~~~-p~~~~~~~~~----~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~~~---~~i~~l~p~l 74 (391)
T 2qgy_A 4 NNQDISIGKLSRLKIWITD-NHLSDDQWSN----TKKFIIIKITTEDGIEGWGEAFSIN-FREKGIA---IIIKELFREI 74 (391)
T ss_dssp -CTTCCCCCEEEEEEEEEC-CCBCGGGCSB----CCCCEEEEEEETTCCEEEEEECCCT-TTHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEec-CccccccccC----CCcEEEEEEEECCCCEEEecccCCC-CChHHHH---HHHHHHHHHh
Confidence 7778899999999999995 7777665543 3467999999999999999998765 3334333 3345588999
Q ss_pred hCCCCCCHHHHHHHHHh-h--CCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeE--eec-CCCHHHHH
Q 014886 119 KESPAMALGSVFGVVAG-L--LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDI--TIP-IVSPAEAA 191 (416)
Q Consensus 119 ~g~~~~~~~~~~~~l~~-~--~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~--~~~-~~~~~~~~ 191 (416)
+|+++.+++.+|+.|.. . ..|+..+++++||||||||+.||..|+|||+||||. ++++|+|. +++ ..+++++.
T Consensus 75 ~G~d~~~~~~i~~~l~~~~~~~~g~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~g~~~~~~~~~~~~ 154 (391)
T 2qgy_A 75 SNIPNLSIKSFYNKISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKKDTNDYL 154 (391)
T ss_dssp TTCTTCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHCSSCCSEEEEEEECCCSSCCCHHHHH
T ss_pred cCCChhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCcCCCcceEEecccCCCCCHHHHH
Confidence 99999999999999865 2 233222679999999999999999999999999996 56899997 444 56899999
Q ss_pred HHHHHHHHcCCCEEEEecCCC-hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCC
Q 014886 192 ELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~-~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (416)
+.+++++++||+.||||+|.+ ++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++
T Consensus 155 ~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~ 232 (391)
T 2qgy_A 155 RQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNP--YWIEEPVDGE 232 (391)
T ss_dssp HHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCC--SEEECSSCTT
T ss_pred HHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCC--CeEeCCCChh
Confidence 999999999999999999977 79999999999997 8999999999999999999999999999997 4999999999
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCch-
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET- 347 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es- 347 (416)
|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ ++
T Consensus 233 d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~~~ 307 (391)
T 2qgy_A 233 NISLLTEIKN----TFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW-NSM 307 (391)
T ss_dssp CHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC-SCT
T ss_pred hHHHHHHHHh----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC-CCc
Confidence 9999999975 67999999999999999999999999999999999998 99999999999999999999999 88
Q ss_pred HHHHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 348 RLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 348 ~ig~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+|++++++|+++++|++.++|++. +..+.+|++.+++.++||++.+|++||||+++|++++++|...
T Consensus 308 ~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 375 (391)
T 2qgy_A 308 SVSASAMLHVCSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSIY 375 (391)
T ss_dssp THHHHHHHHHHHHCTTBCCEEECGGGHHHHHTTBCCSEEEETTEEEECCSSBTCCCBCHHHHHHTEEE
T ss_pred HHHHHHHHHHHHhCCCCceEeecCccchhhHHHhcCCceeeCCEEECCCCCcCCccCCHHHHHhccCC
Confidence 999999999999999998888764 2233478888889999999999999999999999999999765
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-68 Score=542.37 Aligned_cols=363 Identities=22% Similarity=0.274 Sum_probs=312.2
Q ss_pred cccccCceeeEEEeEEEEEEEEeccccceeecCce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH
Q 014886 36 SFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113 (416)
Q Consensus 36 ~~~~~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~--~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~ 113 (416)
.++++...+.|||++|+++++++|++.||.++.++ .+.++.++|+|+|++|++||||+.+ + ++.+.+...+++
T Consensus 29 ~~~~~~~~~~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~--g---~~~~~~~~~i~~ 103 (428)
T 3bjs_A 29 RFTQNSRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP--G---RSPGAITSLIHN 103 (428)
T ss_dssp ----------CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC--T---TCHHHHHHHHHH
T ss_pred ccccCCCCCCCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC--C---CCHHHHHHHHHH
Confidence 44444446779999999999999999999999998 8889999999999999999999986 2 333344444553
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHhhC---CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeec---C
Q 014886 114 -ACEVLKESPAMALGSVFGVVAGLL---PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP---I 184 (416)
Q Consensus 114 -~~~~l~g~~~~~~~~~~~~l~~~~---~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~---~ 184 (416)
+.|.|+|+++.+++.+|+.|.+.. .++ ...+|++||||||||+.||..|+|+|+||||.++++|+|.+ + .
T Consensus 104 ~l~p~liG~d~~~~~~i~~~l~~~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~vp~~~s-g~~~~ 182 (428)
T 3bjs_A 104 TIAPMLIGMKATDCVGAWQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAG-GIALG 182 (428)
T ss_dssp TTTTTTTTSBTTCHHHHHHHHHHHTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCCCEEEEEE-SSCSC
T ss_pred HHHHHhCCCCccCHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeeeee-ccccC
Confidence 789999999999999999995532 221 13579999999999999999999999999998778999976 3 3
Q ss_pred CCH-HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 185 VSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 185 ~~~-~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
.++ +++.+.+++++++||+.+|+|+|.+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .||
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i--~~i 260 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQA--GWL 260 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SCE
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEE
Confidence 578 999999999999999999999998899999999999998 8999999999999999999999999999997 499
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEE
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~ 340 (416)
|||++++|++++++|++ +++ +||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|++++
T Consensus 261 EqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~~ 336 (428)
T 3bjs_A 261 EEPFACNDFASYREVAK----ITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPIN 336 (428)
T ss_dssp ECCSCTTCHHHHHHHTT----TCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCBC
T ss_pred ECCCCccCHHHHHHHHH----hCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999874 678 99999999999999999999999999999999998 9999999999999999999
Q ss_pred EccCCchHHHHHHHHHHHccCCCCceecC----cCCcccccCCCCccee-EeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDL----DTPLLLSEDPVLDGYE-VSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 341 ~~~~~es~ig~~a~~hlaaa~~~~~~~e~----~~p~~~~~d~~~~~~~-~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+| +.||++++++++||+++++|+.+.|+ ++| +. +++.+++. ++||++.+|++||||+++|++++++|...
T Consensus 337 ~~-~~es~i~~~a~~hlaaa~~~~~~~E~~~~~~~~--~~-~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 411 (428)
T 3bjs_A 337 AH-SSATGLNHAATIHFLAATENAGYFEACVSKFNP--FR-DMFGTSFEIGADGCVEPPDAPGLGIEVDESIFEKYPAV 411 (428)
T ss_dssp CB-CCSSHHHHHHHHHHHHHCTTBCCEEEECCSSCT--TT-STTTC-CCCCTTSEECCCCSSBTCCCCCGGGTTTSCCC
T ss_pred ec-CCCcHHHHHHHHHHHHhCCCccceecccccccc--HH-HhccCCCeeeeCCEEECCCCCCCCCeECHHHHHhhhcc
Confidence 99 88999999999999999999766543 244 23 36677788 89999999999999999999999999764
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-68 Score=533.92 Aligned_cols=347 Identities=18% Similarity=0.208 Sum_probs=306.4
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
.|||++|+++++++|++.||+++.++++.++.++|+|+|+ |.+||||+.+ .++.. ..++ .++|.|+|+++
T Consensus 5 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~-----~~~~~---~~i~~~l~~~l~g~d~ 75 (372)
T 3cyj_A 5 GPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYG-----DVSVG---RFVESKLAGVAEGSDA 75 (372)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEES-----CTHHH---HHHHHHTHHHHTTSBT
T ss_pred CCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccC-----cHHHH---HHHHHHHHHHHcCCCc
Confidence 4899999999999999999999999999999999999999 9999999975 23222 2233 37899999999
Q ss_pred CCHHHHHHHHHhhCCC--C--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCC--CHHHHHHHHHHH
Q 014886 124 MALGSVFGVVAGLLPG--H--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKY 197 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g--~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~--~~~~~~~~~~~~ 197 (416)
.+++.+|+.|.+...+ + ..+++++||||||||+.||..|+|+|+||||.++++|+|.+++.. +++++.++++++
T Consensus 76 ~~~~~i~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~~~a~~~ 155 (372)
T 3cyj_A 76 LSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGW 155 (372)
T ss_dssp TCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCCSSEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCCCCceEEEEcCCCCCCHHHHHHHHHHH
Confidence 9999999998765432 1 235789999999999999999999999999988899999987764 457789999999
Q ss_pred HHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCceeeecCCCCCCHHHHH
Q 014886 198 RKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 198 ~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~ 275 (416)
+++||+++|+|+|.++++|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++ ++ .|||||++++|+++++
T Consensus 156 ~~~G~~~~KiKvG~~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~~ 233 (372)
T 3cyj_A 156 AAAGIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGI--SYLEEPVSSEDREGLR 233 (372)
T ss_dssp HHTTCCEEEEECCSSGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCC--CEEECSSCTTCHHHHH
T ss_pred HHcCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCC--cEEECCCCcccHHHHH
Confidence 99999999999999999999999999997 89999999999999999999999999999 97 4999999999999999
Q ss_pred HhHHhhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHH
Q 014886 276 HVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMG 352 (416)
Q Consensus 276 ~l~~~~r~~~~--iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~ 352 (416)
+|++ +++ +||++||++++..+++++ .+++|++|+|++++| ++++++++++|+++|+++++|++ .+
T Consensus 234 ~l~~----~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~------~~ 301 (372)
T 3cyj_A 234 LLRD----RGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCA------PA 301 (372)
T ss_dssp HHHH----HSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSC------HH
T ss_pred HHHH----hCCCCCCEECCCCccCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccch------HH
Confidence 9975 456 799999999999999998 789999999999998 99999999999999999999998 35
Q ss_pred HHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcC-CCCCcccccChhhHHhhhcc
Q 014886 353 FAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFT-NARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 353 a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p-~~PGlGield~~~l~~~~~~ 414 (416)
+++|++++++++.++|+.. +..+..+++.+++.++||++.+| ++||||+++|++.+++|...
T Consensus 302 a~lhlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~~PGlGv~~d~~~l~~~~~~ 365 (372)
T 3cyj_A 302 VSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGSLRPDPDRPGLGLELKRSEAGKYAAE 365 (372)
T ss_dssp HHHHHGGGCTTEEEEEEEHHHHHHHHHHEECCCCCGGGEECCCTTSCBTCCEECHHHHHHHBC-
T ss_pred HHHHHHHhCCCCceeeccCCchhhhhHhhcCCCcccCcEEEcCCCCCcccceECHHHHHHHHhh
Confidence 7899999999988888542 11234566677788999999999 99999999999999999764
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-68 Score=538.57 Aligned_cols=343 Identities=18% Similarity=0.233 Sum_probs=298.4
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
|.|||++|+++.+..+ .++.++|||+|++|++||||+.+. ++.+.+..+ ++.+.|.|+|+++
T Consensus 1 ~~MkI~~i~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~~~~---i~~l~p~liG~d~ 62 (409)
T 3go2_A 1 MSLKVVSVDTLCCDAG-------------WRNYHFVKLTTDEGIVGWSEFDEG--FGSPGVTAV---IEQLGKRLVGASV 62 (409)
T ss_dssp -CCBEEEEEEEEEECS-------------SSEEEEEEEEETTCCEEEEEECST--TTCTTHHHH---HHHHHHHHTTSBT
T ss_pred CCCEEEEEEEEEECCC-------------CccEEEEEEEECCCCEEEEeecCC--CCcHHHHHH---HHHHHHHhcCCCh
Confidence 6899999999988642 246899999999999999998753 334444332 3568999999999
Q ss_pred CCHHHHHHHHHhhCC---CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee--------------cCC
Q 014886 124 MALGSVFGVVAGLLP---GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--------------PIV 185 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~---g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~--------------~~~ 185 (416)
.+++.+|+.|.+... +.....|+||||||||||+||.+|+|||+||||+ +++|++|++. +..
T Consensus 63 ~~~e~~~~~~~~~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~i~~~~~~~~~~~ 142 (409)
T 3go2_A 63 MEHERFFAEAYCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINHPKFFGPPVT 142 (409)
T ss_dssp TCHHHHHHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSEEEEEECSTTHHHHHCTTTSSSCCC
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeEEEEEeecCccccccccccccCCC
Confidence 999999999976432 2224569999999999999999999999999997 6799999653 345
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEec-------------CCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKV-------------GKN-------------LKEDIEVLRAIRAV-HPDSSFILDANE 238 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKv-------------G~~-------------~~~d~~~v~avr~~-g~~~~L~vDaN~ 238 (416)
+++++.+.+++++++||++||+|+ |.+ ++.|+++|++||++ |+++.|++|+|+
T Consensus 143 ~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~ 222 (409)
T 3go2_A 143 DLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNF 222 (409)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 889999999999999999999999 421 45789999999998 899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+|+.++|+++++.|+++++ .|||||+ +|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++
T Consensus 223 ~~~~~~A~~~~~~L~~~~i--~~iE~P~--~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 223 NAKPEGYLKILRELADFDL--FWVEIDS--YSPQGLAYVRN----HSPHPISSCETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp CSCHHHHHHHHHHTTTSCC--SEEECCC--SCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCHHHHHHHHHHHhhcCC--eEEEeCc--CCHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 9999999999999999997 4999997 48999999875 78999999999999999999999999999999999
Q ss_pred CCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCC
Q 014886 319 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNA 396 (416)
Q Consensus 319 k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~ 396 (416)
+ | ++++++++++|+++|+++++|+ ++|+|+.++++||++++||+.++|++. +..+.+|++.+++.++||++.+|++
T Consensus 295 ~-GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~~~E~~~~~~~~~~d~~~~~~~~~~G~i~~p~~ 372 (409)
T 3go2_A 295 W-NGVWQSMKIAAFADAHDINVAPHN-FYGHLCTMINANFAAAVPNLRIMETDIDRLAWEDELFTHAPEYQNGELIIPDR 372 (409)
T ss_dssp H-HCHHHHHHHHHHHHHTTCEEEECC-CSCHHHHHHHHHHHHHCSSBCCEEECCCCCTTHHHHBSCCCCEETTEEECCCS
T ss_pred C-CCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHcCCCCeEEEeeCCcchhhhhhccCCCeeECCEEECCCC
Confidence 9 8 9999999999999999999986 699999999999999999998887653 2334567788888999999999999
Q ss_pred CCcccccChhhHHhhhcc
Q 014886 397 RGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 397 PGlGield~~~l~~~~~~ 414 (416)
||||+|+|++++++|...
T Consensus 373 PGlGveld~~~l~~~~~~ 390 (409)
T 3go2_A 373 PGWGTDPVEEAILAHPPK 390 (409)
T ss_dssp SBSSCCBCHHHHHHSCC-
T ss_pred CCCCcccCHHHHHhCcCC
Confidence 999999999999999764
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-68 Score=535.61 Aligned_cols=354 Identities=16% Similarity=0.196 Sum_probs=316.3
Q ss_pred eeEEEeEEEEEEEEecccc--------------------ceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCccc
Q 014886 44 FTVDVQRAENRPLNVPLIA--------------------PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAED 103 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~--------------------pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~ 103 (416)
|+|||++|+++++++|++. ||+++.++.+.+ .++|+|+|++|++||||+.+.. +++
T Consensus 1 m~mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~~~V~v~td~G~~G~GE~~~~~---~~~ 76 (388)
T 2nql_A 1 MNSPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDR-SVLVRMTTEAGTVGWGETYGIV---APG 76 (388)
T ss_dssp CCCCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEE-EEEEEEEETTCCEEEEEEECSS---CHH
T ss_pred CCceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccce-EEEEEEEECCCCEEEEEecCCC---CcH
Confidence 5699999999999999999 999998888888 9999999999999999998752 232
Q ss_pred HHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHh--h-CCC-Ch-hhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceee
Q 014886 104 QQTAMVKASE-ACEVLKESPAMALGSVFGVVAG--L-LPG-HQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTIT 177 (416)
Q Consensus 104 ~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~--~-~~g-~~-~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~ 177 (416)
.+...+++ ++|.|+|+++.+++.+|+.|.+ . ..+ .. .+++++||||||||++||..|+|+|+||||.++++|
T Consensus 77 --~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp 154 (388)
T 2nql_A 77 --AVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFP 154 (388)
T ss_dssp --HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHHHGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCSEEE
T ss_pred --HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceE
Confidence 23344554 8899999999999999999843 2 222 22 457999999999999999999999999999977999
Q ss_pred eeEeec-CCCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 178 TDITIP-IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+|.+++ ..+++++.+.+++++++||+.+|||+|. +++. +++|++||++ ++++.|++|+|++|+.++|+++++.|++
T Consensus 155 ~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~ 233 (388)
T 2nql_A 155 AYVSGLPERTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQP 233 (388)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGG
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999886 4689999999999999999999999995 7888 9999999997 8999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
+++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|+++ | ++++++++++|+
T Consensus 234 ~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~ 306 (388)
T 2nql_A 234 FDP--WFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAA 306 (388)
T ss_dssp GCC--SCEECCSCTTCHHHHHHHHT----SCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHH
T ss_pred cCC--CEEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHH
Confidence 997 49999999999999999874 789999999999999999999999999999999999 9 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCC--cee-cCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCF--KFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 334 ~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~--~~~-e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
++|+++++||++||+|++++++|++++++++ +|. ++++| +.+|++.+++.++||++.+|++||||+++|++++++
T Consensus 307 ~~g~~~~~h~~~es~i~~aa~~hlaa~~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~ 384 (388)
T 2nql_A 307 EHGIDVIPHATVGAGIFLAASLQASSTLSMLKGHEFQHSIFE--PNRRLLDGDMDCREGRYHLPSGPGLGVRPSEAALGL 384 (388)
T ss_dssp HHTCEECCCCCSSCSHHHHHHHHHHTTCTTBCCEEECHHHHT--GGGGGEESCCEEETTEEECCCSSBTSCEECHHHHHH
T ss_pred HcCCeEEeecCCCcHHHHHHHHHHHHhCCchhhhccccccch--HHHHhccCCCcccCCEEECCCCCCCCceECHHHHHh
Confidence 9999999999999999999999999999986 232 33345 357777788899999999999999999999999999
Q ss_pred hhc
Q 014886 411 GLQ 413 (416)
Q Consensus 411 ~~~ 413 (416)
|.+
T Consensus 385 ~~~ 387 (388)
T 2nql_A 385 IER 387 (388)
T ss_dssp CEE
T ss_pred hhc
Confidence 864
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-68 Score=536.84 Aligned_cols=341 Identities=18% Similarity=0.160 Sum_probs=287.8
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++.++ ..++.++|||+|++|++||||+.. ++++....+ ++.+.|.|+|++|.+
T Consensus 1 MkIt~ie~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~~~~i--~~~l~p~liG~dp~~ 60 (400)
T 4dxk_A 1 MKITKLETVRVA--------------ERTNLLWVLVHTDEGITGLGETFF----GAETVETYV--HEYIAPRVIGRDPLQ 60 (400)
T ss_dssp CCEEEEEEEEET--------------TSTTEEEEEEEETTSCCEEEEEES----CHHHHHHHH--HHTHHHHHTTSCTTC
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEcCCC----CccHHHHHH--HHHHHHHhCCCCcch
Confidence 899999998874 124689999999999999999532 334433322 244889999999999
Q ss_pred HHHHHHHHHhhCCC----ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecC----------------
Q 014886 126 LGSVFGVVAGLLPG----HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI---------------- 184 (416)
Q Consensus 126 ~~~~~~~l~~~~~g----~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~---------------- 184 (416)
++.+|+.| ..+.+ .....|+||||||||||+||.+|+|||+||||+ +++|++|+++..
T Consensus 61 ~~~~~~~~-~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~~~~~ 139 (400)
T 4dxk_A 61 IDLLAQDL-VGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYG 139 (400)
T ss_dssp HHHHHHHH-CCSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSCEEEEBC-------------------
T ss_pred HHHHHHHH-HHHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCccCceeEEEeccccccccccccccccccc
Confidence 99999999 43322 223568999999999999999999999999997 678999965431
Q ss_pred ---CCHHH--------HHHHHHHHHHcCCCEEEEecCC--------------ChhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 014886 185 ---VSPAE--------AAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV-HPDSSFILDANE 238 (416)
Q Consensus 185 ---~~~~~--------~~~~~~~~~~~G~~~~KiKvG~--------------~~~~d~~~v~avr~~-g~~~~L~vDaN~ 238 (416)
.++++ ..+.+++++++||++||+|+|. +++.|+++|++||++ ++++.|++|+|+
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~ 219 (400)
T 4dxk_A 140 LSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHS 219 (400)
T ss_dssp ---------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred ccccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 2455678889999999999971 367899999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+|++++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++
T Consensus 220 ~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~ 293 (400)
T 4dxk_A 220 MWQLLPAMQIAKALTPYQT--FWHEDPIKMDSLSSLTRYAA----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDIS 293 (400)
T ss_dssp CBCHHHHHHHHHHTGGGCC--SEEECCBCTTSGGGHHHHHH----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTT
T ss_pred CCCHHHHHHHHHHHhhcCC--CEEEcCCCcccHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 9999999999999999997 59999999999999999875 68999999999999999999999999999999999
Q ss_pred CCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecC-cC-CcccccCCCCcceeEeCcEEEcCC
Q 014886 319 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DT-PLLLSEDPVLDGYEVSGAVYKFTN 395 (416)
Q Consensus 319 k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~-~~-p~~~~~d~~~~~~~~~~G~~~~p~ 395 (416)
++| ++++++++++|+++|+++++|++. ++|++++++||++++||+.+.|. .. ...+.+|++.+++.++||++.+|+
T Consensus 294 ~~GGit~~~kia~~A~~~gi~~~~h~~~-s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~ 372 (400)
T 4dxk_A 294 WCGGLSEARKIASMAEAWHLPVAPHXCT-GPVVLCASTHLSLNAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPP 372 (400)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCEEEC-CC-CHHHHHHHHHHHHHCTTBCCEECCTTC-CCTHHHHBSCCCEEETTEEECCS
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEecCCC-ChHHHHHHHHHHHhCCCceeEEecccccchhhHhhcCCCCeeeCCEEECCC
Confidence 998 999999999999999999999874 99999999999999999988874 21 112345777888999999999999
Q ss_pred CCCcccccChhhHHhhhcc
Q 014886 396 ARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 396 ~PGlGield~~~l~~~~~~ 414 (416)
+||||+|+|++++++|...
T Consensus 373 ~PGlGveld~~~l~~~~~~ 391 (400)
T 4dxk_A 373 GAGLGMELHPDIEKTFTVS 391 (400)
T ss_dssp SSBTSCCBCTTGGGTSCEE
T ss_pred CCCCCCcCCHHHHhhccce
Confidence 9999999999999999764
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=536.23 Aligned_cols=346 Identities=18% Similarity=0.200 Sum_probs=296.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
-.|||++|+++.+. | .++.++|||+|++|++||||+...+ ++. .+...+++ +.|.|+|++
T Consensus 21 ~~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~g----~~~-~~~~~l~~~l~p~LiG~d 81 (426)
T 4e4f_A 21 QSMKIVSAEVFVTC-----P---------GRNFVTLKITTDSGLTGLGDATLNG----REL-PVASYLNDHVCPQLIGRD 81 (426)
T ss_dssp -CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT----CHH-HHHHHHHHTHHHHHTTSB
T ss_pred cCcEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEecccCC----CcH-HHHHHHHHHHHHHHcCCC
Confidence 46999999997652 1 2468999999999999999987532 222 12233444 789999999
Q ss_pred CCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (416)
|.+++.+|+.|.+.. .|....+|+||||||||||+||.+|+|||+||||+ ++++++|.+....+++++.+++++++
T Consensus 82 p~~ie~i~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~~~~~~~~~ 161 (426)
T 4e4f_A 82 AHQIEDIWQYFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHR 161 (426)
T ss_dssp TTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEECCSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeEeEeCCCCCHHHHHHHHHHHH
Confidence 999999999997642 23223578999999999999999999999999997 45899998877778999999999999
Q ss_pred HcCCCEEEEecCCC-----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 014886 199 KQGFTTLKLKVGKN-----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (416)
Q Consensus 199 ~~G~~~~KiKvG~~-----------------------------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~ 242 (416)
++||++||+|+|.+ ++.++++|++||++ |+++.|++|+|++|+.
T Consensus 162 ~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~a~G~d~~L~vDaN~~~~~ 241 (426)
T 4e4f_A 162 DQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTP 241 (426)
T ss_dssp HTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCH
T ss_pred HcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCCH
Confidence 99999999999832 12357899999998 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G- 321 (416)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++|
T Consensus 242 ~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GG 315 (426)
T 4e4f_A 242 IEAARFGKSVEDYRL--FWMEDPTPAENQACFRLIRQ----HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGG 315 (426)
T ss_dssp HHHHHHHHHTGGGCC--SEEECCSCCSSGGGGHHHHT----TCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTH
T ss_pred HHHHHHHHHHhhcCC--CEEECCCChHHHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCC
Confidence 999999999999997 49999999999999999874 78999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcc
Q 014886 322 VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlG 400 (416)
++++++++++|+++|+++++|+ +.+|++++++++|+++++||+.++|++++.....+++++++.++||++.+|++||||
T Consensus 316 it~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLG 395 (426)
T 4e4f_A 316 ITGMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHSWTFDNGYMHPGEKPGLG 395 (426)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCCCCEEETTEEECCSSSBTC
T ss_pred HHHHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCceeEeecCcchhhHhhcCCCceeeCCEEECCCCCCCC
Confidence 9999999999999999999987 568999999999999999999999987532111234567789999999999999999
Q ss_pred cccChhhHHhhhcc
Q 014886 401 GFLHWDNIAWGLQT 414 (416)
Q Consensus 401 ield~~~l~~~~~~ 414 (416)
||+|++++++|...
T Consensus 396 ve~de~~~~~~~~~ 409 (426)
T 4e4f_A 396 IEFDEKLAAKYPYD 409 (426)
T ss_dssp CCCCHHHHTTSCCC
T ss_pred cccCHHHHHhccCc
Confidence 99999999999753
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=529.62 Aligned_cols=332 Identities=30% Similarity=0.445 Sum_probs=295.7
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC-CCCCHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES-PAMALGS 128 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~-~~~~~~~ 128 (416)
+++++++++||++||+++.++.+.++.++||| |++|++||||+.+.+++ +|+...+...++.+. |+|+ +|.+++.
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v-td~G~~G~GE~~~~~~~-ge~~~~~~~~l~~~~--l~g~~d~~~~e~ 77 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEI-EYEGVTGYGEASMPPYL-GETVESVMNFLKKVN--LEQFSDPFQLED 77 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEEEEECEEEEEE-EETTEEEEEEEECCGGG-SCCHHHHHHHHTTCC--CTTCCCTTCHHH
T ss_pred eEEEEEEEEeccCcEEeeCcEEEEeeEEEEEE-EeCCcEEEEeeeCCCCC-CCCHHHHHHHHHHHH--hcCCCCccCHHH
Confidence 57899999999999999999999999999999 78999999999987643 466555544433332 7898 9999999
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeee-EeecCCCHHHHHHHHHHHHHcCCCEEEE
Q 014886 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD-ITIPIVSPAEAAELASKYRKQGFTTLKL 207 (416)
Q Consensus 129 ~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~Ki 207 (416)
+|+.|.+...++ ++|++||||||||++||.+|+|||+||||.+++++.| ++++..+++++.++++++++ ||++||+
T Consensus 78 ~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~-g~~~~K~ 154 (338)
T 3ijl_A 78 ILSYVDSLSPKD--TAAKAAVDIALHDLVGKLLGAPWYKIWGLNKEKTPSTTFTIGIDTPDVVRAKTKECAG-LFNILKV 154 (338)
T ss_dssp HHHHHHHTCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCGGGCCBBCCBCCCCCHHHHHHHHHHHHT-TCSSEEE
T ss_pred HHHHHHHhccCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceEEEEEeCCCHHHHHHHHHHHHh-cccEEEE
Confidence 999998755444 5689999999999999999999999999997788754 56788899999999998876 8999999
Q ss_pred ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 208 KvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~-~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
|+|. ++|+++|++||++. +..|++|+|++|+ +++|++++++|+++++ .|||||++++|++++++|++ +++
T Consensus 155 Kvg~--~~d~~~v~avR~~~-~~~l~vDaN~~~t~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 225 (338)
T 3ijl_A 155 KLGR--DNDKEMIETIRSVT-DLPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWVTQ----QSP 225 (338)
T ss_dssp ECSS--SCHHHHHHHHHTTC-CCCEEEECTTCCCCHHHHHHHHHHHHHTTE--EEEECCSCTTCHHHHHHHHH----TCS
T ss_pred ecCc--HHHHHHHHHHHhhc-CCcEEEECcCCCCCHHHHHHHHHHHhhCCC--CEEECCCCCCcHHHHHHHHh----cCC
Confidence 9996 47999999999986 3699999999995 9999999999999986 69999999999999999975 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++||++++..++++++ +++|++|+|++++| ++++++++++|+++|+++++||+.|+++++++++|+++.+ +
T Consensus 226 ipIa~dE~~~~~~~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 300 (338)
T 3ijl_A 226 LPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAV---D 300 (338)
T ss_dssp SCEEESTTCCSGGGTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHTTGGGC---S
T ss_pred CCEEECCCCCCHHHHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHhccC---C
Confidence 9999999999999998875 78999999999997 9999999999999999999999999999999999999865 4
Q ss_pred eecCcCCcccccCCCCcceeEeCcEEEcCCCCCccccc
Q 014886 366 FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (416)
Q Consensus 366 ~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGiel 403 (416)
++++++++.+.+|++.+ +.++||++.+|++|||||++
T Consensus 301 ~~~l~~~~~~~~d~~~~-~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 301 FADLDGNLLISNDRFKG-VEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp EECCCGGGGBSCCCCBC-CEEETTEEECCSCSBTCCBC
T ss_pred cccccchhhhhhcccCC-ceeECCEEECCCCCccceee
Confidence 56888887777888775 88999999999999999986
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-68 Score=543.36 Aligned_cols=353 Identities=18% Similarity=0.224 Sum_probs=305.1
Q ss_pred eeeEEEeEEEEEEEEeccccceeecCce-eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC
Q 014886 43 TFTVDVQRAENRPLNVPLIAPFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 43 ~~~mkI~~v~~~~~~~pl~~pf~~a~~~-~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
.+.|||++|+++++..| +.+..++.+. ....+.++|+|+||+|++||||+.. .+.+. ..++.++|.|+|+
T Consensus 5 ~~~~~It~i~~~~v~~~-d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~ 75 (470)
T 3p0w_A 5 THTPRVTEMQVIPVAGR-DSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG-----GEGIR---QALERVIPLVVGQ 75 (470)
T ss_dssp -CCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTGGGTTTC
T ss_pred CCCCeEEEEEEEEecCC-CcccccccccCCCcceEEEEEEEECCCCEEEEeCCC-----hHHHH---HHHHHHHHHhCCC
Confidence 45689999999999998 6777766655 3456799999999999999999853 23332 2345689999999
Q ss_pred CCCCHHHHHHHHHhhCC-----C-------------------Ch-----hhHHHHHHHHHHHHHHHhhCCCcHHHHhC-C
Q 014886 122 PAMALGSVFGVVAGLLP-----G-------------------HQ-----FASVRAAVEMALIDAVAKSVSMPLWRLFG-G 171 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~~-----g-------------------~~-----~~~a~said~ALwDl~gk~~g~pl~~LLG-g 171 (416)
++.+++.+|+.|++.+. | +. ...|++|||||||||+||.+|+|||+||| |
T Consensus 76 d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG 155 (470)
T 3p0w_A 76 SIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155 (470)
T ss_dssp BGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTS
T ss_pred ChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC
Confidence 99999999999987542 1 00 13689999999999999999999999999 6
Q ss_pred C-CceeeeeEee-----------------------------cCCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHH
Q 014886 172 V-SNTITTDITI-----------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEV 219 (416)
Q Consensus 172 ~-~~~v~~~~~~-----------------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~ 219 (416)
+ +++|++|.+. +..+++++.++++++++ +||++||+|+|. ++++|+++
T Consensus 156 ~~r~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~r 235 (470)
T 3p0w_A 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEA 235 (470)
T ss_dssp CCCSEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 5 5789998653 13578999999999988 699999999995 88999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccCCCeEEeCCCC
Q 014886 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESC 295 (416)
Q Consensus 220 v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~~iPIa~dEs~ 295 (416)
|++||+++|++.|+||+|++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++||++||++
T Consensus 236 v~avRea~pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~ 308 (470)
T 3p0w_A 236 IAAIKARFPHARVTLDPNGAWSLNEAIALCKGQGHL-V--AYAEDPCGPEAGYSGREVMAEFKR----ATGIPTATNMIA 308 (470)
T ss_dssp HHHHHHHCTTSEEEEECTTBBCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSS
T ss_pred HHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHhcccc-c--eeecCCCChhhccchHHHHHHHHh----cCCCCEEeCCcc
Confidence 999999999999999999999999999999999998 6 49999999998 688999875 678999999999
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcc
Q 014886 296 RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL 374 (416)
Q Consensus 296 ~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~ 374 (416)
++..+++++++.+++|++|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++||++++||+ +.+++.++.
T Consensus 309 ~~~~~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~-~~~~d~~~~ 386 (470)
T 3p0w_A 309 TDWRQMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN-ITAIDTHWI 386 (470)
T ss_dssp CSHHHHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHH
T ss_pred CCHHHHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-ceeeccccc
Confidence 9999999999999999999999 676 9999999999999999999999999999999999999999986 445554332
Q ss_pred c---ccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 375 L---SEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 375 ~---~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+ ..+++.+++.++||++.+|++||||||+|++++++|..
T Consensus 387 ~~~~~~~l~~~p~~~~dG~i~vP~~PGLGveld~~~l~~~~~ 428 (470)
T 3p0w_A 387 WQEAQERLTREPLRIQGGHVAVPERPGLGIEIDMDRVMAAHA 428 (470)
T ss_dssp HHTTTCCCBSSCCCEETTEEECCSSSBTSCCBCHHHHHHHHH
T ss_pred cccchhhhcCCCceeECCEEECCCCCCcCceeCHHHHHHhhh
Confidence 1 25677888899999999999999999999999999864
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-67 Score=537.98 Aligned_cols=357 Identities=19% Similarity=0.216 Sum_probs=295.6
Q ss_pred eEEEeEEEEEEEEeccccceeecCc--eeeeeeEEEEEEEECC--CceEEEEeccCCccCcccHHHHHHHHHHHHHHHhC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~--~~~~~~~~iV~v~t~~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
.|||++|+++.+++|++.|+..+.+ +....+.++|+|+||+ |++||||+.+.+. +.+. +...++.+.|.|+|
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g~-~~~~---~~~~i~~l~~~liG 79 (441)
T 4a35_A 4 RGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGK-GTEV---VVCAVNALAHHVLN 79 (441)
T ss_dssp CCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEECST-THHH---HHHHHHHHGGGTTT
T ss_pred CCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCCCC-ChHH---HHHHHHHHHHHhCC
Confidence 5899999999999999988776543 3455689999999998 9999999987431 1222 23334668999999
Q ss_pred CCCCCHHHHHHHHHhhC--------CCC---hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc---------------
Q 014886 121 SPAMALGSVFGVVAGLL--------PGH---QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN--------------- 174 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~~--------~g~---~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~--------------- 174 (416)
+||.+++.+|+.+++.+ .|+ ....|+||||+|||||+||.+|+|||+||||+.+
T Consensus 80 ~d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~i~~~~~~~y~~d~ 159 (441)
T 4a35_A 80 KDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYITDV 159 (441)
T ss_dssp CBHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCHHHHHTTCCCTTTTTT
T ss_pred CCHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccceecccccccccc
Confidence 99999865444443321 122 2346899999999999999999999999999732
Q ss_pred ---------------------------eeeeeEee-c--CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHH
Q 014886 175 ---------------------------TITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 224 (416)
Q Consensus 175 ---------------------------~v~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr 224 (416)
.+|+|.+. + ..+++++.+++++++++||++||+|+|.++++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~avR 239 (441)
T 4a35_A 160 LTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIR 239 (441)
T ss_dssp CCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 26777653 2 35899999999999999999999999999999999999999
Q ss_pred Hh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 225 AV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 225 ~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
++ ||++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++.++ .+++||++||++++..++++
T Consensus 240 ~a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~--~~iEeP~~~~d~~~~~~l~~~l~-~~~iPIa~gE~~~~~~~~~~ 316 (441)
T 4a35_A 240 DMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKP--LWIEEPTSPDDILGHATISKALV-PLGIGIATGEQCHNRVIFKQ 316 (441)
T ss_dssp HHHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHHHHG-GGTCEEEECTTCCSHHHHHH
T ss_pred HHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCc--cEEeCCCCcccHHHHHHHHHhcc-CCCCCEEeCCccccHHHHHH
Confidence 98 8999999999999999999999999999987 59999999999999999985211 27899999999999999999
Q ss_pred HHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH-HHHH-------ccCCCCceecCcCCcc
Q 014886 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA-GHLS-------AGLGCFKFIDLDTPLL 374 (416)
Q Consensus 304 ~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~-~hla-------aa~~~~~~~e~~~p~~ 374 (416)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++++++ .|++ ++.++..++|+..+
T Consensus 317 ~l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~~H~---~~ig~aa~~~hl~~~~~~~l~~~~~~~~~E~~~~-- 391 (441)
T 4a35_A 317 LLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHA---GGVGLCELVQHLIIFDYISVSASLENRVCEYVDH-- 391 (441)
T ss_dssp HHHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBCCCC---CTTTHHHHHHHHHHHHHHHTSCCCTTCCEEECCS--
T ss_pred HHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeC---ChHHHHHHHHHHhhhhhcccccCcccceeeccch--
Confidence 999999999999999998 9999999999999999999986 35666543 3553 23334445665432
Q ss_pred cccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 375 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 375 ~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
..+++.+++.++||++.+|++||||||+|++++++|..+
T Consensus 392 -~~~~~~~p~~~~dG~i~vp~~PGLGveld~~~l~~~~~~ 430 (441)
T 4a35_A 392 -LHEHFKYPVMIQRASYMPPKDPGYSTEMKEESVKKHQYP 430 (441)
T ss_dssp -SGGGBSSCCEESSSEEECCCSSBCSCCBCHHHHHHHBTT
T ss_pred -hhhcccCCceeeCCEEECCCCCcCCcccCHHHHHhccCC
Confidence 245677888999999999999999999999999999764
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-67 Score=534.66 Aligned_cols=354 Identities=16% Similarity=0.166 Sum_probs=302.5
Q ss_pred CceeeEEEeEEEEEEEEecccc----------------ceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccH
Q 014886 41 TQTFTVDVQRAENRPLNVPLIA----------------PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQ 104 (416)
Q Consensus 41 ~~~~~mkI~~v~~~~~~~pl~~----------------pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~ 104 (416)
.-+.+|||++|+.+.+..+-.. .+..+.++++.++.++|||+|++|++||||+.+.+ .
T Consensus 18 ~~~~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~----~-- 91 (412)
T 3stp_A 18 LYFQSMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALAP----S-- 91 (412)
T ss_dssp -----CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSSH----H--
T ss_pred eeeeccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCCH----H--
Confidence 3457899999999998763211 23466778888899999999999999999986532 2
Q ss_pred HHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Cceeee
Q 014886 105 QTAMVKASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITT 178 (416)
Q Consensus 105 ~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~ 178 (416)
.+...+++ +.|.|+|++|.+++.+|+.|.+... +....+|+||||||||||+||.+|+|||+||||. +++|++
T Consensus 92 -~~~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~ 170 (412)
T 3stp_A 92 -VVKKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPV 170 (412)
T ss_dssp -HHHHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSSSSEEE
T ss_pred -HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCCCceEEE
Confidence 22333455 7899999999999999999976431 1223568999999999999999999999999998 678999
Q ss_pred eEee-cCCCHHHHHHHHHHHHHcCCCEEEEecCCC-------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 014886 179 DITI-PIVSPAEAAELASKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~-------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
|.+. ...+++++.+.+++++++||++||||+|.+ +++|+++|++||++ |+++.|++|+|++|++++|++++
T Consensus 171 y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~ 250 (412)
T 3stp_A 171 YYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRML 250 (412)
T ss_dssp EEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHH
Confidence 9884 567899999999999999999999999853 57999999999998 89999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| +++++++
T Consensus 251 ~~Le~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~ki 324 (412)
T 3stp_A 251 PKLAPYEP--RWLEEPVIADDVAGYAELNA----MNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAAQKI 324 (412)
T ss_dssp HHHGGGCC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHH
T ss_pred HHHHhcCC--CEEECCCCcccHHHHHHHHh----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHH
Confidence 99999997 49999999999999999975 68999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCc------CCcccccCCCCcceeEeCcEEEcCCC-CCccc
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD------TPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGG 401 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~------~p~~~~~d~~~~~~~~~~G~~~~p~~-PGlGi 401 (416)
+++|+++|+++++|| +.++++||+++.++..++|+. ....+.++++.+++.++||++.+|++ ||||+
T Consensus 325 a~~A~a~gi~v~~h~------~~aa~~hlaaA~~~~~~~e~~~~~d~~~~~~l~~~~~~~~~~~~~G~i~vp~~~PGlGv 398 (412)
T 3stp_A 325 NAIAEAAQIPVIPHA------GQMHNYHLTMANTNCPISEYFPVFDVEVGNELFYYIFEGDPEAVDGYLQLDDDLPGLGI 398 (412)
T ss_dssp HHHHHHHTCCBCCSS------CSHHHHHHHHTCTTCCCEEECCCCSSSSSTTTHHHHEECCCCCBTTEECCCSSSCBTSC
T ss_pred HHHHHHcCCEEEecc------HHHHHHHHHHhCCCCceEEecccccccccchhhhhhccCCCcccCCEEEcCCCCCcccc
Confidence 999999999999998 467899999888887776653 12223345667778899999999999 99999
Q ss_pred ccChhhHHhhhc
Q 014886 402 FLHWDNIAWGLQ 413 (416)
Q Consensus 402 eld~~~l~~~~~ 413 (416)
++|++++++|..
T Consensus 399 eld~~~l~~~~~ 410 (412)
T 3stp_A 399 AISDKHLQHFDI 410 (412)
T ss_dssp EECCTTGGGEEE
T ss_pred cCCHHHHHhccc
Confidence 999999999975
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-67 Score=530.08 Aligned_cols=340 Identities=16% Similarity=0.175 Sum_probs=289.8
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (416)
|||++|+++.+. ..++.++|||+|++|++||||+.. ..+.. ...+. .+.|.|+|++|.
T Consensus 4 mkIt~v~~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~---~~~i~~~l~p~liG~dp~ 62 (410)
T 3dip_A 4 PRITALRTIRLP--------------ERPKLIWVEVETEDGLTGLGETFR----GAQAV---EAVLHEQTAPAIIGRAAE 62 (410)
T ss_dssp CBEEEEEEEEET--------------TEEEEEEEEEEETTSCEEEEEEES----CHHHH---HHHHHHTHHHHHTTSBTT
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEeCCC----ChHHH---HHHHHHHHHHHhcCCCcc
Confidence 899999998764 135789999999999999999432 23332 22334 388999999999
Q ss_pred CHHHHHHHHHhhCC----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecC---------------
Q 014886 125 ALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--------------- 184 (416)
Q Consensus 125 ~~~~~~~~l~~~~~----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~--------------- 184 (416)
+++.+|+.|.+... +.....|+||||||||||+||.+|+|||+||||+ +++|++|+++..
T Consensus 63 ~~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~g~~~~~~~~~~~~ 142 (410)
T 3dip_A 63 NITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGS 142 (410)
T ss_dssp CHHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECTTTC------------
T ss_pred hHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCcCCceeEEEecccccccccccccccccc
Confidence 99999999976431 1233568999999999999999999999999996 679999976431
Q ss_pred --------CCHHH----HHHHHHHHHHcCCCEEEE--------ecCC-----ChhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 014886 185 --------VSPAE----AAELASKYRKQGFTTLKL--------KVGK-----NLKEDIEVLRAIRAV-HPDSSFILDANE 238 (416)
Q Consensus 185 --------~~~~~----~~~~~~~~~~~G~~~~Ki--------KvG~-----~~~~d~~~v~avr~~-g~~~~L~vDaN~ 238 (416)
.++++ ..+.+++++++||++||+ |+|. ++++|+++|++||++ ++++.|++|+|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~ 222 (410)
T 3dip_A 143 AELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHS 222 (410)
T ss_dssp ----------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred cccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 245677889999999999 9874 357899999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecC-CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP-~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
+|++++|+++++.|+++++ .||||| ++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|+
T Consensus 223 ~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 296 (410)
T 3dip_A 223 LWGTHAAARICNALADYGV--LWVEDPIAKMDNIPAVADLRR----QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDL 296 (410)
T ss_dssp CBCHHHHHHHHHHGGGGTC--SEEECCBSCTTCHHHHHHHHH----HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred CCCHHHHHHHHHHHHhcCC--CEEECCCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence 9999999999999999987 599999 89999999999975 6799999999999999999999999999999999
Q ss_pred CCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecC-c-CCcccccCCCCcceeEeCcEEEcC
Q 014886 318 AKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-D-TPLLLSEDPVLDGYEVSGAVYKFT 394 (416)
Q Consensus 318 ~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~-~-~p~~~~~d~~~~~~~~~~G~~~~p 394 (416)
+++| ++++++++++|+++|+++++|++ |+|++++++||++++||+.++|+ + ....+.++++.+++.++||++.+|
T Consensus 297 ~~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p 374 (410)
T 3dip_A 297 TWCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAIFQEVVRASLATWYADLVDHLPVIQEGIALAP 374 (410)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBCCEEEECTTSCCTHHHHBSCCCCEETTEEECC
T ss_pred cccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCeEEEeccccCchhHHhhcCCCCcccCCEEECC
Confidence 9997 99999999999999999999998 99999999999999999988874 3 122234567788889999999999
Q ss_pred CCCCcccccChhhHHhhhcc
Q 014886 395 NARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 395 ~~PGlGield~~~l~~~~~~ 414 (416)
++||||+|+|++++++|...
T Consensus 375 ~~PGlGve~d~~~l~~~~~~ 394 (410)
T 3dip_A 375 TRPGLGTALLPHVRKIAGAV 394 (410)
T ss_dssp CSSBTSCCBCTTGGGSTTCE
T ss_pred CCCCCCcccCHHHHhccCce
Confidence 99999999999999999653
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-66 Score=523.81 Aligned_cols=345 Identities=18% Similarity=0.227 Sum_probs=305.4
Q ss_pred EEEeEEEEEEEEecccccee---ec-CceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhC
Q 014886 46 VDVQRAENRPLNVPLIAPFT---IA-TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKE 120 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~---~a-~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g 120 (416)
|||++|+++++++|++.||+ ++ .++++.++.++|+|+|++|++||||+.. ++. +...+++ ++|.|+|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~------~~~--~~~~i~~~l~~~l~g 72 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP------EIV--RPHVIEKFVKKVLIG 72 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG------GGG--CHHHHHHTHHHHHTT
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC------chH--HHHHHHHHHHHHHcC
Confidence 89999999999999999999 87 6778888999999999999999999972 221 2233453 7899999
Q ss_pred CCCCCHHHHHHHHHhh-C-C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEee--c------CCCHHH
Q 014886 121 SPAMALGSVFGVVAGL-L-P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI--P------IVSPAE 189 (416)
Q Consensus 121 ~~~~~~~~~~~~l~~~-~-~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~--~------~~~~~~ 189 (416)
+++.+++.+|+.|.+. . . +...+++++||||||||++||..|+|||+||||.++++|+|.++ + ..++++
T Consensus 73 ~d~~~~~~~~~~l~~~~~~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~~~~~~~g~~~~~~~~~~e~ 152 (382)
T 1rvk_A 73 EDHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPED 152 (382)
T ss_dssp SBTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSCSEEEEEEEECCCCCCTTTTSSHHH
T ss_pred CChHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCCCcceecEEeccCccccccCCCHHH
Confidence 9999999999998542 1 2 12235789999999999999999999999999987799999543 3 468999
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 190 AAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+.+.+++++++||+.+|||+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|
T Consensus 153 ~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~ 230 (382)
T 1rvk_A 153 YGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGF--DW 230 (382)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTC--SE
T ss_pred HHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CE
Confidence 9999999999999999999996 789999999999997 8999999999999999999999999999997 49
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~-~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~ 339 (416)
||||++++|++++++|++ ++++||++||++++ +++++++++.+++|++|+|++++| ++++++++++|+++|+++
T Consensus 231 iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 306 (382)
T 1rvk_A 231 IEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMEC 306 (382)
T ss_dssp EECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred EeCCCChhhHHHHHHHHh----hCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 999999999999999975 67999999999999 999999999999999999999997 999999999999999999
Q ss_pred EEccCCchHHHHHHHHHHHccCCCCceecCc----------CCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHH
Q 014886 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLD----------TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (416)
Q Consensus 340 ~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~----------~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~ 409 (416)
++| +.+++ ++|++++++++.+.|+. +|+ +.+|++ +++. +||++.+|++||||+++|+++++
T Consensus 307 ~~~-~~~~~-----~~~laaa~~~~~~~E~~~~~~~~~~~~~~~-~~~d~~-~~~~-~~G~~~~p~~PGlGv~~d~~~l~ 377 (382)
T 1rvk_A 307 EVH-GNTAM-----NLHVVAATKNCRWYERGLLHPFLEYDDGHD-YLKSLS-DPMD-RDGFVHVPDRPGLGEDIDFTFID 377 (382)
T ss_dssp EEC-CCSHH-----HHHHHHHCSSCCCEEEEEECTTSCGGGCCT-TBSSCS-SCBC-TTSEEECCSCSBTCCCBCHHHHH
T ss_pred eec-CCCCH-----HHHHHHhCCccceeeeccccccccccccch-hHHhhc-cCCC-cCCEEECCCCCCCccccCHHHHH
Confidence 999 55776 88999999998777654 342 357777 7788 99999999999999999999999
Q ss_pred hhhc
Q 014886 410 WGLQ 413 (416)
Q Consensus 410 ~~~~ 413 (416)
+|..
T Consensus 378 ~~~~ 381 (382)
T 1rvk_A 378 NNRV 381 (382)
T ss_dssp HTBC
T ss_pred hhcC
Confidence 9875
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-67 Score=537.10 Aligned_cols=351 Identities=19% Similarity=0.262 Sum_probs=302.4
Q ss_pred eEEEeEEEEEEEEeccccceeecCc-eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~-~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
.|||++|+++++..+ +.+.....| .....+.++|+|+|++|++||||+.. .+.+. ..++.+.|.|+|++|
T Consensus 4 ~~~It~v~~~~v~~~-d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~dp 74 (450)
T 3mzn_A 4 FPKITKMNVVPVAGE-DGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPS-----SEGIL---NGLEKCRSLVEGARV 74 (450)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTHHHHTTCBG
T ss_pred CCEEEEEEEEEeccc-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhCCCCh
Confidence 479999999999988 555554443 34456788999999999999999853 23332 234568899999999
Q ss_pred CCHHHHHHHHHhhCC-------CC------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhC--CC-CceeeeeEee-----
Q 014886 124 MALGSVFGVVAGLLP-------GH------QFASVRAAVEMALIDAVAKSVSMPLWRLFG--GV-SNTITTDITI----- 182 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~-------g~------~~~~a~said~ALwDl~gk~~g~pl~~LLG--g~-~~~v~~~~~~----- 182 (416)
.+++.+|+.|.+.+. |. ....|+||||||||||+||.+|+|||+||| |+ +++|++|.+.
T Consensus 75 ~~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v~~y~~~~~~gd 154 (450)
T 3mzn_A 75 NEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGD 154 (450)
T ss_dssp GGHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEEEBCEEEECBCC
T ss_pred hhHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceEEeeeeeccccc
Confidence 999999999976432 11 235689999999999999999999999999 54 5689987642
Q ss_pred ------------------------cCCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC
Q 014886 183 ------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA 236 (416)
Q Consensus 183 ------------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDa 236 (416)
+..+++++.++++++++ +||++||+|+|. ++++|+++|++||+++|++.|+||+
T Consensus 155 ~~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDa 234 (450)
T 3mzn_A 155 PDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDP 234 (450)
T ss_dssp GGGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred cccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 13578999999999887 699999999995 7899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
|++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++||++||++++..+++++++.+++|+
T Consensus 235 N~~w~~~~A~~~~~~L~~~-i--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di 307 (450)
T 3mzn_A 235 NGAWKLDEAVRVLEPIKHL-L--SYAEDPCGQEGGFSGRETMAEFKK----RTGLPTATNMIATDYKQLQYAVQLNSVDI 307 (450)
T ss_dssp TTCBCHHHHHHHHGGGGGG-C--SEEESSBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHhhhc-c--ceeeCCCCcccccchHHHHHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCE
Confidence 9999999999999999998 6 49999999998 688999875 68999999999999999999999999999
Q ss_pred EEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccc--cCCCCcceeEeCc
Q 014886 313 INIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGA 389 (416)
Q Consensus 313 v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G 389 (416)
+|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||. +.+++.++.+. ++++++++.++||
T Consensus 308 ~~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~-~~~~d~~~~~~~~~~l~~~~~~~~~G 385 (450)
T 3mzn_A 308 PLADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE-ITAIDTHWIWQDGQRITREPFQIRDG 385 (450)
T ss_dssp EBCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHTTCCSBSSCCCCBTT
T ss_pred EEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccccccccCCCeEECC
Confidence 99998 676 9999999999999999999999999999999999999999986 45555544332 4677888899999
Q ss_pred EEEcCCCCCcccccChhhHHhhhc
Q 014886 390 VYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 390 ~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++.+|++||||||+|+++|++|..
T Consensus 386 ~i~vp~~PGLGveld~~~l~~~~~ 409 (450)
T 3mzn_A 386 KLTVPKTPGLGIELDDDKLMEAHE 409 (450)
T ss_dssp EEECCCSSBTSCCBCHHHHHHHHH
T ss_pred EEECCCCCcCCCccCHHHHHHHHH
Confidence 999999999999999999999754
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-67 Score=525.35 Aligned_cols=342 Identities=21% Similarity=0.322 Sum_probs=286.5
Q ss_pred eeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 43 ~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
.-.|||++|+++..+ ..++|||+|++|++||||+.+. +.+....++ .+.+.|.|+|++
T Consensus 20 ~~~mkIt~v~~~~~~-----------------~~~~V~v~Td~G~~G~GE~~~~---~~~~~~~~i--~~~l~p~LiG~d 77 (388)
T 3tcs_A 20 FQSMKLKAIETFTND-----------------AVGFVRVTTQDGAQGWGQVSTY---HADITCTVL--HRQVAPWMLGQD 77 (388)
T ss_dssp ---CBEEEEEEEECS-----------------SCEEEEEEETTSCEEEEECCSS---SHHHHHHHH--HHHTHHHHTTSB
T ss_pred ccccEEEEEEEEEeC-----------------CeEEEEEEECCCCEEEEeccCC---ccHHHHHHH--HHHHHHHhCCCC
Confidence 355999999987521 3579999999999999998753 233222221 134789999999
Q ss_pred CCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY 197 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~ 197 (416)
+.+++.+|+.|.... +|.....|+|||||||||++||.+|+|||+||||.++++++|.+... .++++..+.+.+.
T Consensus 78 ~~~~e~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~ 157 (388)
T 3tcs_A 78 ITDLDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRL 157 (388)
T ss_dssp CTTHHHHHHHHHHHTTTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCEEEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCCCceEEEEecCcCCCChHHHHHHHHHH
Confidence 999999999997532 33333468999999999999999999999999999889999987532 3676666655554
Q ss_pred -HHcCCCEEEEecCCC--------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 198 -RKQGFTTLKLKVGKN--------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 198 -~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
.++||++||+|+|.+ +++|+++|++||++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++
T Consensus 158 ~~~~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~ 235 (388)
T 3tcs_A 158 RDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGF--CHFEEPCP 235 (388)
T ss_dssp HHHHCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CEEECCSC
T ss_pred HHhcCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--eEEECCCC
Confidence 579999999999943 45689999999998 8999999999999999999999999999997 49999999
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCc
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 346 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~e 346 (416)
++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 236 ~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~h~~~- 310 (388)
T 3tcs_A 236 YWELAQTKQVTD----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTPHCAN- 310 (388)
T ss_dssp TTCHHHHHHHHH----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCCCCCS-
T ss_pred ccCHHHHHHHHH----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCC-
Confidence 999999999875 68999999999999999999999999999999999997 999999999999999999999984
Q ss_pred hHHHHHHHHHHHccCCCC-ceecCc--CCc--ccccCCC-CcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 347 TRLAMGFAGHLSAGLGCF-KFIDLD--TPL--LLSEDPV-LDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 347 s~ig~~a~~hlaaa~~~~-~~~e~~--~p~--~~~~d~~-~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++.++++|+++++||+ .++|+. ++. -+..+++ .+++.++||++.+|++||||+|+|++++++|..
T Consensus 311 ~~~~~~a~~hl~aa~pn~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~G~i~vp~~PGLGveld~~~l~~~~~ 383 (388)
T 3tcs_A 311 WSLVTLFTMHLLRAIPNAGKYLEFSIEGPDYYPWQEGLFVKTPYEIEDGHARVTDAPGWGVEISPEWLARSQY 383 (388)
T ss_dssp TTTHHHHHHHHHTTCTTBCSCEEEECCCTTTCGGGTTCBSSCSCCCBTTEEEECSSSBTCCCBCHHHHHHSEE
T ss_pred cHHHHHHHHHHHHhCCCccceeEeecCcccccchhhhhccCCCceeeCCEEECCCCCCCCCeECHHHHHhCcc
Confidence 567788899999999997 466643 221 1234565 667789999999999999999999999999864
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-67 Score=526.74 Aligned_cols=352 Identities=19% Similarity=0.196 Sum_probs=305.2
Q ss_pred eeEEEeEEEEEEEEeccccceeecCc------eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~------~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (416)
+.|||++|+++.+++|++.||.++.+ +++.++.++|+|+|++|++||||+. .+.++.+.+. ..++.++|.
T Consensus 11 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~~~---~~i~~l~~~ 86 (393)
T 2og9_A 11 PSDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSY-SKRAGGPGQF---AHAREIAPA 86 (393)
T ss_dssp CCCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEE-EESTTHHHHH---HHHHHHGGG
T ss_pred CCCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEec-CcccchHHHH---HHHHHHHHH
Confidence 34999999999999999999999976 6778899999999999999999994 2333333322 224568999
Q ss_pred HhCCCCCCHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--C-CHHHH
Q 014886 118 LKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAEA 190 (416)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~-~~~~~ 190 (416)
|+|+++.+++.+|+.|.... .++ ..++|++||||||||++||.+|+|+|+||||.++++++|.+++. . +++++
T Consensus 87 l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~y~~~g~~~~~~~e~~ 166 (393)
T 2og9_A 87 LIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQL 166 (393)
T ss_dssp GTTSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSCSEEEEEBCTTCCTTSCHHHH
T ss_pred HcCCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEECCCcCCCCHHHH
Confidence 99999999999999987642 222 23579999999999999999999999999999889999988533 3 89999
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
.+.+++++++||+.||+|+| .+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||+++
T Consensus 167 ~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~ 244 (393)
T 2og9_A 167 MVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNL--VWIEEPLDA 244 (393)
T ss_dssp HHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCc
Confidence 99999999999999999999 4789999999999998 8999999999999999999999999999997 499999999
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
+|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 245 ~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~- 319 (393)
T 2og9_A 245 YDHEGHAALAL----QFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPHFAME- 319 (393)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH-
T ss_pred ccHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEeccCccH-
Confidence 99999999975 67999999999999999999999999999999999997 9999999999999999999998743
Q ss_pred HHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 348 ~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
.++|++++++++.++|+.. + ..+++.+++.++||++.+|++||||+++|+++ ++|...+
T Consensus 320 -----~~~~laaa~~~~~~~e~~~-~--~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~-~~~~~~~ 378 (393)
T 2og9_A 320 -----LHVHLAAAYPREPWVEHFE-W--LEPLFNERIEIRDGRMLVPTRPGLGLTLSGQV-KAWTREE 378 (393)
T ss_dssp -----HHHHHHHTSSSCCEEECCC-T--TGGGBSCCCCEETTEEECCCSSBTCCCBCTHH-HHHEEEE
T ss_pred -----HHHHHHhhCCCCceeeccc-c--hHHHccCCCeeeCCEEECCCCCCCCeeeCHHH-HHhccCH
Confidence 4679999999998888642 2 24566778899999999999999999999999 9987653
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-67 Score=534.00 Aligned_cols=351 Identities=18% Similarity=0.210 Sum_probs=300.7
Q ss_pred eEEEeEEEEEEEEeccccceeecCce-eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~-~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
.|||++|+++++..+ ..++.+..|. -...+.++|+|+|++|++||||+.. .+.+. ..++.+.|.|+|+++
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~dp 78 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPG-----GATIE---NALTEAIPHVVGRPI 78 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHGGGTTTCBG
T ss_pred CCEEEEEEEEEeccC-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhcCCCh
Confidence 479999999999998 6777766554 3346778999999999999999853 23332 234568999999999
Q ss_pred CCHHHHHHHHHh--hCCC-----Ch------hhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CceeeeeEeec-----
Q 014886 124 MALGSVFGVVAG--LLPG-----HQ------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITIP----- 183 (416)
Q Consensus 124 ~~~~~~~~~l~~--~~~g-----~~------~~~a~said~ALwDl~gk~~g~pl~~LLG-g~-~~~v~~~~~~~----- 183 (416)
.+++.+|+.|++ .+.+ .. ...|++|||||||||+||.+|+|||+||| |+ +++|++|.+..
T Consensus 79 ~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v~~y~~~~~~gd~ 158 (455)
T 3pfr_A 79 SILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFYVGDD 158 (455)
T ss_dssp GGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCCCSEEEBCEEECCBCCG
T ss_pred hHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcCCeEEEeeeecccccc
Confidence 999999999987 4421 11 15689999999999999999999999999 65 57899886421
Q ss_pred ------------------------CCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCC
Q 014886 184 ------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDAN 237 (416)
Q Consensus 184 ------------------------~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN 237 (416)
..+++++.++++++++ +||++||+|+|. ++++|+++|++||+++|++.|+||+|
T Consensus 159 ~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN 238 (455)
T 3pfr_A 159 KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEGSKEIDTVIELKKHFPDARITLDPN 238 (455)
T ss_dssp GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCeEeecCC
Confidence 2578999999999887 699999999995 78999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++||++||++.+..+++++++.+++|++
T Consensus 239 ~~w~~~~A~~~~~~L~~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~ 311 (455)
T 3pfr_A 239 GCWSLDEAIQLCKGLNDV-L--TYAEDPCIGENGYSGREIMAEFRR----RTGIPTATNMIATNWREMCHAIMLQSVDIP 311 (455)
T ss_dssp TBSCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHhhccc-c--eeeecCCChhhccchHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999998 6 49999999998 688999875 679999999999999999999999999999
Q ss_pred EeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccc---cCCCCcceeEeCc
Q 014886 314 NIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS---EDPVLDGYEVSGA 389 (416)
Q Consensus 314 ~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~---~d~~~~~~~~~~G 389 (416)
|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||+ +.+++.++.+. .+++++++.++||
T Consensus 312 ~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~-~~~~d~~~~~~~~~~~l~~~p~~~~dG 389 (455)
T 3pfr_A 312 LADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN-PTALDTHWIWQEGDFYLTKNPLEIKDG 389 (455)
T ss_dssp BCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC-CCCBCCCGGGTTTTCCSBSSCCCEETT
T ss_pred EecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccchhhccCCCCeEECC
Confidence 9998 676 9999999999999999999999999999999999999999986 33444333222 4677888899999
Q ss_pred EEEcCCCCCcccccChhhHHhhhc
Q 014886 390 VYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 390 ~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++.+|++||||||+|+++|++|.+
T Consensus 390 ~i~vp~~PGLGveld~~~l~~~~~ 413 (455)
T 3pfr_A 390 KIKLNDKPGLGIELNMDNVLKAHE 413 (455)
T ss_dssp EEECCSCSBTCCCBCHHHHHHHHH
T ss_pred EEeCCCCCcCCcccCHHHHHHHHH
Confidence 999999999999999999999764
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=525.10 Aligned_cols=352 Identities=20% Similarity=0.242 Sum_probs=309.2
Q ss_pred eeEEEeEEEEEEEEeccccceeecCc------eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~------~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (416)
+.|||++|+++++++|++.||+++.+ +.+.++.++|+|+|++|++||||+.. +.++.+.+. ..++.++|.
T Consensus 24 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~-~~~~~~~~~---~~~~~l~p~ 99 (398)
T 2pp0_A 24 TGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYS-KRAGGQGIY---AHAKEIADN 99 (398)
T ss_dssp HSCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEEE-SSTTHHHHH---HHHHHHGGG
T ss_pred CCCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEecC-ccchHHHHH---HHHHHHHHH
Confidence 45999999999999999999999865 67788999999999999999999943 333333222 223558999
Q ss_pred HhCCCCCCHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--C-CHHHH
Q 014886 118 LKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAEA 190 (416)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~-~~~~~ 190 (416)
|+|+++.+++.+|+.|.+.. .++ ..++|++||||||||++||..|+|||+||||.++++|+|.+++. . +++++
T Consensus 100 l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~vp~y~~~g~~~~~~~e~~ 179 (398)
T 2pp0_A 100 LLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQV 179 (398)
T ss_dssp GTTSCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSCSEEEEEECTTSCTTSCHHHH
T ss_pred HcCCCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEecCCcCCCCHHHH
Confidence 99999999999999987642 222 23578999999999999999999999999999889999988533 3 89999
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
.+.+++++++||+.||+|+| .+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||+++
T Consensus 180 ~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i--~~iEqP~~~ 257 (398)
T 2pp0_A 180 LKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNL--IWIEEPLDA 257 (398)
T ss_dssp HHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTC--SCEECCSCT
T ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC--ceeeCCCCh
Confidence 99999999999999999999 4789999999999998 8999999999999999999999999999997 499999999
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
+|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 258 ~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h~~~~- 332 (398)
T 2pp0_A 258 YDIEGHAQLAA----ALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAME- 332 (398)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH-
T ss_pred hhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeecCccH-
Confidence 99999999975 67999999999999999999999999999999999997 9999999999999999999998754
Q ss_pred HHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 348 ~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
.++|++++++++.++|+.. + ..+++.+++.++||++.+|++||||+++|++ +++|...+
T Consensus 333 -----~~~~laaa~~~~~~~e~~~-~--~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~-~~~~~~~~ 391 (398)
T 2pp0_A 333 -----VHLHLSAAYPLEPWLEHFE-W--LNPLFNEQLELRDGRMWISDRHGLGFTLSEQ-ARRWTQLT 391 (398)
T ss_dssp -----HHHHHHHTCSSCCCEEECS-T--TGGGBSCCCEEETTEEECCSSSBTCCCBCHH-HHHTEEEE
T ss_pred -----HHHHHHhcCCCcceeeccc-c--hhhhccCCCeeeCCEEECCCCCCCCcccCHH-HHHhhhcH
Confidence 3689999999988888642 2 2456677889999999999999999999999 59987654
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-66 Score=526.56 Aligned_cols=353 Identities=17% Similarity=0.246 Sum_probs=303.9
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.|||++|+++.+.+|++.|++. ...++|||+|++|++||||+.+..+.+.++ +...++++.|.|+|+++.
T Consensus 3 ~MkI~~i~~~~~~~p~~~p~~~-------~~~v~V~v~td~G~~G~Ge~a~~~g~~~~~---~~~~i~~l~p~liG~d~~ 72 (407)
T 2o56_A 3 LMKITSVDIIDVANDFASATSK-------WRPVVVKINTDEGISGFGEVGLAYGVGASA---GIGMAKDLSAIIIGMDPM 72 (407)
T ss_dssp CCCEEEEEEEECCCCC-----C-------CCCEEEEEEETTSCEEEEEESCSSSSCHHH---HHHHHHHHHHHHTTSCTT
T ss_pred CCEEEEEEEEEeccccCCCccc-------ceeEEEEEEeCCCCEEEEeeccCCCCchHH---HHHHHHHHHHHhCCCChH
Confidence 3899999999999999999642 135899999999999999993322222333 334455689999999999
Q ss_pred CHHHHHHHHHhhCC----CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe-ec--CC---------C
Q 014886 125 ALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV---------S 186 (416)
Q Consensus 125 ~~~~~~~~l~~~~~----g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~-~~--~~---------~ 186 (416)
+++.+|+.|.+... +. ...+|++||||||||++||..|+|||+||||. ++++|+|.+ ++ .. +
T Consensus 73 ~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~ 152 (407)
T 2o56_A 73 NNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTE 152 (407)
T ss_dssp CHHHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSSEEEEEECGGGCCSTTCTTCCCCS
T ss_pred HHHHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCCCCeeeeeeeeccCCccccccccccCC
Confidence 99999999976432 11 13578999999999999999999999999997 568999987 53 34 8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEec------CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH
Q 014886 187 PAEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 246 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKv------G~-------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~ 246 (416)
++++.+.+++++++||+++|+|+ |. +++.|+++|++||++ |+++.|++|+|++|++++|+
T Consensus 153 ~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 232 (407)
T 2o56_A 153 PEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAI 232 (407)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 99999999999999999999997 53 457899999999997 89999999999999999999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHH
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGA 325 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~ 325 (416)
++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++
T Consensus 233 ~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~ 306 (407)
T 2o56_A 233 QFGRMIEELGI--FYYEEPVMPLNPAQMKQVAD----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEV 306 (407)
T ss_dssp HHHHHHGGGCC--SCEECSSCSSSHHHHHHHHH----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred HHHHHHHhcCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 99999999997 49999999999999999975 67999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC--cccccCCCCcceeEeCcEEEcCCCCCccccc
Q 014886 326 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (416)
Q Consensus 326 l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~PGlGiel 403 (416)
++++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+..|++.+++.++||++.+|++||||+++
T Consensus 307 ~~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~ 385 (407)
T 2o56_A 307 KKICDMAHVYDKTVQIHVCG-GPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQEL 385 (407)
T ss_dssp HHHHHHHHTTTCEECCCCCS-CHHHHHHHHHHHHHCTTBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCB
T ss_pred HHHHHHHHHcCCeEeecCCC-CHHHHHHHHHHHHhCCCceeEeeccccccccHHHhccCCceecCCEEECCCCCCCCcee
Confidence 99999999999999999995 99999999999999999988886421 1124678888889999999999999999999
Q ss_pred ChhhHHhhhcc
Q 014886 404 HWDNIAWGLQT 414 (416)
Q Consensus 404 d~~~l~~~~~~ 414 (416)
|++++++|...
T Consensus 386 d~~~l~~~~~~ 396 (407)
T 2o56_A 386 TEETMKKSPTI 396 (407)
T ss_dssp CHHHHHHSCEE
T ss_pred CHHHHHhccCC
Confidence 99999999764
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-66 Score=520.62 Aligned_cols=348 Identities=18% Similarity=0.227 Sum_probs=303.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHH-HHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~ 122 (416)
|.|||++|+++.+. |. +| ..++|+|+|++|++||||+.+. | +++...+...++.+.| .|+|++
T Consensus 1 m~mkI~~i~~~~v~-~~--~~----------~~v~V~v~td~G~~G~GE~~~~--~-g~~~~~~~~~i~~l~~~~l~G~d 64 (392)
T 2poz_A 1 MSLKITGVNIYLLK-SG--RL----------HPVLVEISTDEGITGAGEAGIA--Y-GVGGTAAAGMIKDLSERFLIGKD 64 (392)
T ss_dssp --CCEEEEEEEECC-BT--TB----------CCEEEEEEETTSCCEEEEESCS--S-SSCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCeEEEEEEEEEe-cC--Cc----------cEEEEEEEECCCCEEEEeecCC--c-CCchHHHHHHHHHhhHhhhcCCC
Confidence 56999999999987 43 22 2689999999999999999764 2 3444444445567889 999999
Q ss_pred CCCHHHHHHHHHhhCC----CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe--e-cCCCHHHHHHH
Q 014886 123 AMALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I-PIVSPAEAAEL 193 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~----g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~--~-~~~~~~~~~~~ 193 (416)
+.+++.+|+.|.+... +. ..++|++||||||||++||.+|+|||+||||. ++++|+|.+ . +..+++++.+.
T Consensus 65 ~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~v~~y~~g~~~~~~~~~~~~~~ 144 (392)
T 2poz_A 65 PSRIEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARA 144 (392)
T ss_dssp TTCHHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEECSCCTTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeccccCCCCHHHHHHH
Confidence 9999999999976422 21 13578999999999999999999999999997 568999975 2 24689999999
Q ss_pred HHHHHHcCCCEEEEecC------------------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 194 ASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG------------------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+++++++||+.+|+|+| .+++.|+++|++||++ ++++.|++|+|++|++++|+++++.|++
T Consensus 145 a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~ 224 (392)
T 2poz_A 145 VERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGE 224 (392)
T ss_dssp THHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998 2457899999999997 8999999999999999999999999999
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
+++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 225 ~~i--~~iE~P~~~~~~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 298 (392)
T 2poz_A 225 LDI--CFVEEPCDPFDNGALKVISE----QIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAE 298 (392)
T ss_dssp GCE--EEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHH
T ss_pred cCC--CEEECCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 986 59999999999999999975 67999999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC--Cc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 334 ~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~--p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
++|+++++|++. |+|++++++||++++||+.++|+.. .+ .+.+|++.+++.++||++.+|++||||+++|++++++
T Consensus 299 ~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~ 377 (392)
T 2poz_A 299 AYNMRVAPHVCG-SSLIETATLQLEANITNFMIHEHYPAFKADDGYVEVLENPPSISSGYFEMPNGPGLGAVLIKRNIEP 377 (392)
T ss_dssp TTTCEECCCCCS-SHHHHHHHHHHHHHCTTBCCEEECGGGGGSTTCCCCBSSCCCEETTEEECCCSSBTSCCBCHHHHGG
T ss_pred HcCCeEecCCCC-CHHHHHHHHHHHHhCCCceEEeeccccccCchHHHhccCCCeecCCEEECCCCCCCCceeCHHHHHh
Confidence 999999999997 9999999999999999998888652 11 2347788888999999999999999999999999999
Q ss_pred hhcc
Q 014886 411 GLQT 414 (416)
Q Consensus 411 ~~~~ 414 (416)
|...
T Consensus 378 ~~~~ 381 (392)
T 2poz_A 378 YLWA 381 (392)
T ss_dssp GEEE
T ss_pred ccCC
Confidence 9764
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-66 Score=522.81 Aligned_cols=355 Identities=16% Similarity=0.221 Sum_probs=306.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
|.|||++|+++.+.+|++.+... . ...++|||+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~~~---~---~~~v~V~v~td~G~~G~Ge~~~~~g~~~~---~~~~~i~~l~p~liG~d~ 71 (410)
T 2gl5_A 1 MSLKITSIEVFDCELKKRDQTMS---S---YNPVLIRVNTDSGLSGIGEVGLAYGAGAK---AGVGIIRDLAPLIVGEDP 71 (410)
T ss_dssp -CCCEEEEEEEECCGGGTCGGGT---T---CCCEEEEEEETTSCEEEEEESCSSSTTHH---HHHHHHHHHGGGTTTSCT
T ss_pred CCceEEEEEEEEecccccccCcc---c---ccceEEEEEeCCCCEEEEeecCcCCCChH---HHHHHHHHHHHHhCCCCh
Confidence 56999999999999998764310 1 13579999999999999999332222233 333445568999999999
Q ss_pred CCHHHHHHHHHhhCC----CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe-ec--CC-------CH
Q 014886 124 MALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 187 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~----g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~-~~--~~-------~~ 187 (416)
.+++.+|+.|.+... +. ..++|++||||||||++||.+|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 72 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 151 (410)
T 2gl5_A 72 LNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKNHILVTP 151 (410)
T ss_dssp TCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSEEEEEECGGGCCTTCCSCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceeEeEecccCCccccccccCCH
Confidence 999999999976432 11 23578999999999999999999999999996 568999987 65 34 89
Q ss_pred HHHHHHHHHHHHcCCCEEEEec------CC------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 014886 188 AEAAELASKYRKQGFTTLKLKV------GK------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKv------G~------------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~ 242 (416)
+++.+.+++++++||+++|||+ |. +++.|+++|++||++ |+++.|++|+|++|++
T Consensus 152 ~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 231 (410)
T 2gl5_A 152 EEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGT 231 (410)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 9999999999999999999997 53 457899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G- 321 (416)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++|
T Consensus 232 ~~ai~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 305 (410)
T 2gl5_A 232 NSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGG 305 (410)
T ss_dssp HHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTH
T ss_pred HHHHHHHHHHHhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999986 59999999999999999975 67999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC--cccccCCCCcceeEeCcEEEcCCCCCc
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGH 399 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~PGl 399 (416)
++++++++++|+++|+++++|++ +|+|+.++++||++++||+.++|+... ..+..|++.+++.++||++.+|++|||
T Consensus 306 it~~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGl 384 (410)
T 2gl5_A 306 ITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGL 384 (410)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCHHHHTTBSSCCCCBTTEECCCCSSBT
T ss_pred HHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcceeeeeccccccchHHHhccCCceecCCEEECCCCCcC
Confidence 99999999999999999999999 699999999999999999988886421 113467888888999999999999999
Q ss_pred ccccChhhHHhhhcc
Q 014886 400 GGFLHWDNIAWGLQT 414 (416)
Q Consensus 400 Gield~~~l~~~~~~ 414 (416)
|+++|++++++|...
T Consensus 385 Gv~~d~~~l~~~~~~ 399 (410)
T 2gl5_A 385 GQELNDEVVKEYLAY 399 (410)
T ss_dssp SCCBCHHHHTTTEEE
T ss_pred CcccCHHHHHhcccc
Confidence 999999999999764
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-66 Score=528.70 Aligned_cols=353 Identities=16% Similarity=0.187 Sum_probs=289.0
Q ss_pred EEEeEEEEEEEEeccccceeecCc---eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATS---RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~---~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
.+|++++++++... ..|.....| .+..| .||+|+|++|++||||++. ++... ..++.+.|.|+|++
T Consensus 26 p~i~~~~v~pva~~-d~~l~~~~g~h~p~f~R--tiV~v~Td~Gi~G~GE~~g-----~~~~~---~~le~~~p~liG~d 94 (464)
T 4g8t_A 26 PIITEMQVIPVAGH-DSMLLNLSGAHSPYFTR--NIVILKDNSGNTGVGEVPG-----GEKIR---QTLEDAKPLVIGKT 94 (464)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECCSEEEE--EEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHHGGGTTTCB
T ss_pred CEEeEEEEEEecCC-CcccccCCcccCCccce--EEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHHcCCC
Confidence 38999999999752 233344332 33333 5899999999999999853 23332 23456899999999
Q ss_pred CCCHHHHHHHHHhhCCC-------------ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CceeeeeEeecC---
Q 014886 123 AMALGSVFGVVAGLLPG-------------HQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITIPI--- 184 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g-------------~~~~~a~said~ALwDl~gk~~g~pl~~LLG-g~-~~~v~~~~~~~~--- 184 (416)
|.+++.+|+.|.+.+.+ .....|+||||||||||+||.+|+|||+||| |+ +++|++|.+...
T Consensus 95 p~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V~~y~~~~~~~d 174 (464)
T 4g8t_A 95 LGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGD 174 (464)
T ss_dssp GGGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEEEBCEEECCBCC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeeccCc
Confidence 99999999999764321 1224689999999999999999999999999 55 568999876532
Q ss_pred --------------------------CCHHHHHHHHHH-HHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeC
Q 014886 185 --------------------------VSPAEAAELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA 236 (416)
Q Consensus 185 --------------------------~~~~~~~~~~~~-~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDa 236 (416)
.+++++.+++++ +.++||++||+|+| .+.++|+++|++||+++|+++||||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~~~~~~di~~v~avrea~pd~~L~vDa 254 (464)
T 4g8t_A 175 RKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDP 254 (464)
T ss_dssp GGGSCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEEC
T ss_pred ccccchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHhhCCCceEEEEC
Confidence 245666555544 45569999999999 58899999999999998899999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
|++|++++|+++++.|+++ + .|||||++++|+.++.++.+.+++++++||++||++++..+++++++.+++|++|+|
T Consensus 255 N~~wt~~~Ai~~~~~le~~-l--~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~d 331 (464)
T 4g8t_A 255 NGAWSLDEAVKIGKQLKGV-L--AYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLAD 331 (464)
T ss_dssp TTCBCHHHHHHHHHHTTTT-C--SCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBCC
T ss_pred CCccCHHHHHHHHHHhhhc-c--ceeecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEecc
Confidence 9999999999999999987 6 499999999886444333223345789999999999999999999999999999999
Q ss_pred CCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEc
Q 014886 317 LAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 317 ~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~ 393 (416)
+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||..+ ++...++ ...+++++++++++||++.+
T Consensus 332 ~-~~GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~~~~~~~~~~~~~~~l~~~p~~i~dG~i~v 410 (464)
T 4g8t_A 332 P-HFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIDTHWIWQEGNQRLTKEPFQIKGGLVEV 410 (464)
T ss_dssp H-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTSCCSBSSCCCEETTEEEC
T ss_pred c-cccchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCccccccccccchhHhhcCCCCeeECCEEEC
Confidence 4 776 999999999999999999999999999999999999999998644 3333222 23467888899999999999
Q ss_pred CCCCCcccccChhhHHhhhc
Q 014886 394 TNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 394 p~~PGlGield~~~l~~~~~ 413 (416)
|++||||||+|+|+|++|-+
T Consensus 411 P~~PGLGvelD~d~l~kyh~ 430 (464)
T 4g8t_A 411 PKKPGLGVELDMDQVMKANE 430 (464)
T ss_dssp CSSSBTCCCBCHHHHHHHHH
T ss_pred CCCCCCceEECHHHHHHHhH
Confidence 99999999999999999854
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=519.54 Aligned_cols=351 Identities=17% Similarity=0.200 Sum_probs=303.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
|.|||++|+++.+.+|..+|+ ..++|+|+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~~~~~~~----------~~v~V~v~td~G~~G~Ge~~~~~g~~~~---~~~~~i~~l~p~l~G~d~ 67 (403)
T 2ox4_A 1 MSLKITKIEIFHVHTRPQSGQ----------RPILVKVSTDEGIYGLGEAGIAYGVGGS---AAAGILKDYAALLIGEDP 67 (403)
T ss_dssp -CCCEEEEEEEEECCCTTTCC----------CCEEEEEEETTSCEEEEEESCSSSSCHH---HHHHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEEEEEecCCCCCCc----------cceEEEEEeCCCCEEEEeecCCCCCchH---HHHHHHHHHHHHcCCCCH
Confidence 569999999999987532222 3589999999999999999332222233 333445568999999999
Q ss_pred CCHHHHHHHHHhhCC----CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe-ec--CC-------CH
Q 014886 124 MALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 187 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~----g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~-~~--~~-------~~ 187 (416)
.+++.+|+.|.+... +. ..++|++||||||||+.||.+|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 68 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 147 (403)
T 2ox4_A 68 FNTEAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWGKERKSKGRK 147 (403)
T ss_dssp TCHHHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSSEEEEEECGGGCSSSSCCCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeeeEeeccCCccccccccCCH
Confidence 999999999976432 11 13578999999999999999999999999996 568999987 64 34 89
Q ss_pred HHHHHHHHHHHHcCCCEEEEec------CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 014886 188 AEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 247 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKv------G~-------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~ 247 (416)
+++.+.+++++++||+++|||+ |. +++.|+++|++||++ |+++.|++|+|++|+.++|++
T Consensus 148 e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~ 227 (403)
T 2ox4_A 148 EEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQ 227 (403)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 9999999999999999999997 53 457899999999997 899999999999999999999
Q ss_pred HHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHH
Q 014886 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 326 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l 326 (416)
+++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +++++
T Consensus 228 ~~~~l~~~~i--~~iE~P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~ 301 (403)
T 2ox4_A 228 FAKAIEEFNI--FFYEEINTPLNPRLLKEAKK----KIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFK 301 (403)
T ss_dssp HHHHHGGGCE--EEEECCSCTTSTHHHHHHHH----TCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHH
T ss_pred HHHHHHhhCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHH
Confidence 9999999986 59999999999999999975 68999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC--cccccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 327 ~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
+++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+..|++.+++.++||++.+|++||||+++|
T Consensus 302 ~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d 380 (403)
T 2ox4_A 302 KIADMAHIFEVTVQAHVAG-TGVAEAASLHAEIAIPNFCIHEHHQKTLLPEYEELCVHNYQPVKGRYKVPELPGIGQDIT 380 (403)
T ss_dssp HHHHHHHHTTCEECCCCCS-CHHHHHHHHHHHHTCSSBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEeecCCC-CHHHHHHHHHHHHhCCCcceeeeccccccchHHHhccCCceecCCEEECCCCCCCCcccC
Confidence 9999999999999999995 99999999999999999988886321 11246788888899999999999999999999
Q ss_pred hhhHHhhhcc
Q 014886 405 WDNIAWGLQT 414 (416)
Q Consensus 405 ~~~l~~~~~~ 414 (416)
++++++|...
T Consensus 381 ~~~l~~~~~~ 390 (403)
T 2ox4_A 381 EKLYQISDYV 390 (403)
T ss_dssp GGGGTSEEEE
T ss_pred HHHHHhcccc
Confidence 9999999764
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-65 Score=516.89 Aligned_cols=350 Identities=21% Similarity=0.261 Sum_probs=298.7
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|.|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+ .+....+.+...+++ +.|.|+|++
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~g-~~~~~~~~~~~~i~~~l~p~l~G~d 79 (389)
T 2oz8_A 1 MSLSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLF-NPLPDQQEIESVFEHEVWPSLKGNR 79 (389)
T ss_dssp --CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEESS-SCCCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CCCEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEeccCC-CccccHHHHHHHHHHHHHHHHcCCC
Confidence 569999999999999999999999999999999999999999999999998632 110012233344454 689999998
Q ss_pred CCCHHHHHHHHHhhCCCC---hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCC--CHHHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLLPGH---QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKY 197 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~---~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~--~~~~~~~~~~~~ 197 (416)
+.++ +..+.....+. ..+++++||||||||++||..|+|+|+||||.++++++|.+++.. +++++.+.++++
T Consensus 80 ~~~~---~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~~~vp~y~~~~~~~~~~~~~~~~a~~~ 156 (389)
T 2oz8_A 80 AIAL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHA 156 (389)
T ss_dssp HHHH---TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHH
T ss_pred HHHH---HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCceEEEEeCCCcCCCHHHHHHHHHHH
Confidence 7554 21111001121 024589999999999999999999999999988899999887653 899999999999
Q ss_pred HHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCceeeecCCCCCCHHH
Q 014886 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEG 273 (416)
Q Consensus 198 ~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~ 273 (416)
+++||++||||+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|+++
T Consensus 157 ~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i--~~iEqP~~~~~~~~ 234 (389)
T 2oz8_A 157 ASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDL--LWVEDPILRHDHDG 234 (389)
T ss_dssp HHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCC--SEEESCBCTTCHHH
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCc--eEEeCCCCCcCHHH
Confidence 99999999999996 899999999999998 7999999999999999999999999999 876 59999999999999
Q ss_pred HHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEc-cCCchHHHH
Q 014886 274 LGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG-GMVETRLAM 351 (416)
Q Consensus 274 ~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~-~~~es~ig~ 351 (416)
+++|++ ++ ++||++||++ +..+++++++.+++|++|+| -|++++++++++|+++|+++++| ++.+
T Consensus 235 ~~~l~~----~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik---GGit~a~~i~~~A~~~gi~~~~~~~~~e----- 301 (389)
T 2oz8_A 235 LRTLRH----AVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH---GQVTDVMRIGWLAAELGIPISIGNTFLE----- 301 (389)
T ss_dssp HHHHHH----HCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC---SCHHHHHHHHHHHHHHTCCEEECCCGGG-----
T ss_pred HHHHHh----hCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC---cCHHHHHHHHHHHHHcCCeEeecccHHH-----
Confidence 999975 67 8999999999 99999999999999999999 23999999999999999999999 7754
Q ss_pred HHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 352 GFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 352 ~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+++|++++++++.++|+. ++ +..+++.+++.++||++.+|++||||+++|++.+++|..+.
T Consensus 302 -a~lhlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 362 (389)
T 2oz8_A 302 -AGVHMAVALPEVEWLEYS-FQ-NFDHLVEQPIEIRDGYAYAPDRPGHGLVLSEKARGEWSRPR 362 (389)
T ss_dssp -TTHHHHHHSTTEEEEEEC-CC-SCGGGBSSCCCEETTEEECCSSSBTSCCBCHHHHHHSBCCS
T ss_pred -HHHHHHhcCCCCceeecc-hH-HHhhhccCCceEECCEEECCCCCcCCCccCHHHHHhhcccc
Confidence 788999999998888865 32 34667778889999999999999999999999999998654
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-66 Score=523.01 Aligned_cols=341 Identities=21% Similarity=0.233 Sum_probs=302.7
Q ss_pred eEEEeEEEEEEEEeccccceeecC-ceeee--eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIAT-SRLDQ--VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~-~~~~~--~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
.|||++|+++.+++|++.||+++. +.++. ++.++|+|+|+ |.+||||+. + .++.++|.|+|+
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~--g------------~i~~l~p~l~G~ 75 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSI--H------------MTPEWAEDVIGR 75 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECC--S------------CCHHHHHTTTTC
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEecc--c------------HHHHHHHHhcCC
Confidence 599999999999999999999995 55677 88999999999 999999986 1 123478999999
Q ss_pred CCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC----C--CceeeeeEe---ecCCCH-----
Q 014886 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG----V--SNTITTDIT---IPIVSP----- 187 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg----~--~~~v~~~~~---~~~~~~----- 187 (416)
++.+++.+| .+ ..+++++||||||||+.||..|+|+|+|||| . ++++|+|.+ ++..++
T Consensus 76 d~~~~~~~~-------~~-~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~vp~~~s~~~~~~~~~~~~~~ 147 (392)
T 3p3b_A 76 RLLDLFDDR-------GR-LREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERA 147 (392)
T ss_dssp BGGGGBCTT-------SC-BCGGGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEEEEEEEEEECBTTTTCCSHHH
T ss_pred CHHHHHHHH-------hH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCCcceeEeecccCCCCcccccc
Confidence 988887665 22 1246899999999999999999999999999 6 568999964 555678
Q ss_pred --HHHHHHHHHHHHcCCCEEEEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 188 --AEAAELASKYRKQGFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 188 --~~~~~~~~~~~~~G~~~~KiKvG~---------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
+++.+.+++++++||+++|+|+|. +++.|+++|++||++ ++++.|++|+|++|++++|+++++.|+++
T Consensus 148 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~ 227 (392)
T 3p3b_A 148 AVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDV 227 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999999995 678999999999997 89999999999999999999999999999
Q ss_pred CCCceeeecCCCCCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHH
Q 014886 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRA 334 (416)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~ 334 (416)
++ .|||||++ +|++++++|++.+++ .+++||++|| ++++.+++++++.+++|++|+|++++|++++++++++|++
T Consensus 228 ~i--~~iE~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~Git~~~~i~~~A~~ 303 (392)
T 3p3b_A 228 NL--YWLEEAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDA 303 (392)
T ss_dssp CE--EEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHHH
T ss_pred CC--CEEecCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccccCHHHHHHHHHHHHH
Confidence 86 59999999 999999999751100 1789999999 9999999999999999999999999999999999999999
Q ss_pred cCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 335 ~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
+|+++++| +.+|++++++++|++++++++.++|++++ +.+|++.+++.++||++.+|++||||+++|++++++|...
T Consensus 304 ~gi~~~~h-~~es~i~~~a~l~laa~~~~~~~~e~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 380 (392)
T 3p3b_A 304 HGLRSAPH-CYGNAYGIYASGHLSAAVRNFEFVEYDDI--TIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINR 380 (392)
T ss_dssp TTCEECCB-CCSCTHHHHHHHHHGGGCTTBCCEEECCE--EETTEECTTCEEETTEEEECCSSBTSCEECHHHHHHHHHH
T ss_pred cCCEEEec-CCCCHHHHHHHHHHHHhCCCCceeeccch--hhHhhccCCCcccCCEEECCCCCccceeECHHHHHhhhcc
Confidence 99999999 88999999999999999999988998876 4678887889999999999999999999999999999875
Q ss_pred C
Q 014886 415 S 415 (416)
Q Consensus 415 ~ 415 (416)
+
T Consensus 381 ~ 381 (392)
T 3p3b_A 381 S 381 (392)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=514.02 Aligned_cols=342 Identities=19% Similarity=0.252 Sum_probs=296.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC--
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-- 123 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-- 123 (416)
||| +|+++++++|++.||+++.++++.++.++|+| |++|++||||+.+.+++++|+...+...++.++|.|+|+++
T Consensus 3 ~~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~d~~~ 80 (377)
T 2pge_A 3 SGM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIR 80 (377)
T ss_dssp CCC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHSCCHH
T ss_pred cce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCCCccc
Confidence 466 89999999999999999999999999999999 89999999999998888888877777777778999999987
Q ss_pred ----------CCHHHHHHHHHhh------C---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC
Q 014886 124 ----------MALGSVFGVVAGL------L---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 184 (416)
Q Consensus 124 ----------~~~~~~~~~l~~~------~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~ 184 (416)
.+++.+|+.|... + .+...+++++||||||||+.||..|+|+|+||||.++++++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~~~vp~~~~i~~ 160 (377)
T 2pge_A 81 LRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWM 160 (377)
T ss_dssp HHHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTSCCEEBCEEECC
T ss_pred hhhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEEeEEecC
Confidence 3445666555321 1 11123578999999999999999999999999998788999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
.+++++.+++++++++||+++|+|+| .++++|+++|+++|++ | +++.|++|+|++|+.++|+++++.|+++++ .|
T Consensus 161 ~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~ 238 (377)
T 2pge_A 161 GEAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HS 238 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC---CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCC--SE
T ss_pred CCHHHHHHHHHHHHHHhhhhheeecCCCChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--cE
Confidence 89999999999999999999999999 4889999999999998 7 899999999999999999999999999987 59
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH--HHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD--VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d--~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
||||++++|++++++|++ ++++||++||++++..+ ++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 239 iEqP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~ 314 (377)
T 2pge_A 239 IEQPIRQHQWSEMAALCA----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIG 314 (377)
T ss_dssp EECCBCSSCHHHHHHHHH----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCE
T ss_pred EEccCCcccHHHHHHHHh----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCe
Confidence 999999999999999975 67999999999999998 889999999999999999997 99999999999999999
Q ss_pred EEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCC
Q 014886 339 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 396 (416)
Q Consensus 339 ~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~ 396 (416)
+++|+++||++++++++|++++++++.++|++++..+.+|++ .++.++||++.+|++
T Consensus 315 ~~~~~~~es~i~~~a~~hlaa~~~~~~~~~l~~~~~~~~d~~-~~~~~~~G~~~~~~~ 371 (377)
T 2pge_A 315 FWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-SNLAVDGGLLGVSEG 371 (377)
T ss_dssp EEEBCCSCCHHHHHHHHHHHHTTCCSSCBBCSCCCCBSSCCC-CCCEECSSEEEC---
T ss_pred EEecCCcccHHHHHHHHHHHHCCCCCccccCCchhhhHhhcc-CCceeeCCEEecCCc
Confidence 999999999999999999999999988888887666677876 578999999999986
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=513.89 Aligned_cols=345 Identities=17% Similarity=0.231 Sum_probs=299.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (416)
|.|||++|+++.+. |. . ..++|+|+|++| +||||+ +. + .+...+...++++.|.|+|+++
T Consensus 4 ~~MkI~~i~~~~~~-~~-~------------~~v~V~v~td~G-~G~Ge~-~~-g---~~~~~~~~~i~~l~p~liG~d~ 63 (410)
T 2qq6_A 4 SAPRITRVETAAIR-AV-G------------PSVLVRVWAGDE-HGLGEC-YP-S---APAAGIHHIVMNMEEQLLGEDP 63 (410)
T ss_dssp CCCCCCEEEEEEEC-CC--------------CEEEEEEEETTE-EEEEEE-CC-C---SCHHHHHHHHHTTHHHHTTCCT
T ss_pred CCceEeEEEEEEEC-CC-C------------CEEEEEEEECCc-EEEEEe-cC-C---CChHHHHHHHHHHHHHhCCCCc
Confidence 34899999999996 43 1 148999999999 999999 52 2 2233344445568899999999
Q ss_pred CCHHHHHHHHHhhCC-----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecC--C----------
Q 014886 124 MALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--V---------- 185 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~-----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~--~---------- 185 (416)
.+++.+|+.|.+... +....+|++||||||||++||.+|+|||+||||. ++++|+|.+++. .
T Consensus 64 ~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~vp~y~~~~~g~~~h~~~~~~~~ 143 (410)
T 2qq6_A 64 RDVERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGG 143 (410)
T ss_dssp TCHHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCSCSEEEEEEECCCSEECTTCCEEECC
T ss_pred cHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCccCceeEEEecccccccccccccccc
Confidence 999999999976432 1223578999999999999999999999999996 568999987641 3
Q ss_pred -----CHHHHHHHHHHHHHcCCCEEEEec----CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 014886 186 -----SPAEAAELASKYRKQGFTTLKLKV----GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (416)
Q Consensus 186 -----~~~~~~~~~~~~~~~G~~~~KiKv----G~-------------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~ 242 (416)
+++++.+.+++++++||+.+|+|+ |. +++.|+++|++||++ |+++.|++|+|++|++
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 144 LFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp TTCSTHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 788899999999999999999999 64 457899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G- 321 (416)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++|
T Consensus 224 ~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 297 (410)
T 2qq6_A 224 PSSIRFARAMEPFGL--LWLEEPTPPENLDALAEVRR----STSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGG 297 (410)
T ss_dssp HHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTH
T ss_pred HHHHHHHHHHhhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999997 49999999999999999874 78999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC-cccccCCCC--cceeEeCcEEEcCCCCC
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVL--DGYEVSGAVYKFTNARG 398 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~--~~~~~~~G~~~~p~~PG 398 (416)
++++++++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+..|++. +++.++||++.+|++||
T Consensus 298 ite~~~ia~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~~G~i~~p~~PG 376 (410)
T 2qq6_A 298 LAEAKRIANLAELDYIPFAPHNVS-SPVGTVAAAHVCAAVSNFAVLEWHAIDMPHWEDFVRYPGGPVIREGHIELTEEPG 376 (410)
T ss_dssp HHHHHHHHHHHHTTTCCBCCBCCS-CHHHHHHHHHHHHSCTTBCCEEECCTTCTTGGGGBCCSSSSSEETTEEECCSSSG
T ss_pred HHHHHHHHHHHHHcCCeEeecCCC-cHHHHHHHHHHHHhCCCceeeecccccchhhhhhcccCCCceeeCCEEECCCCCC
Confidence 999999999999999999999995 99999999999999999988886321 112467777 78899999999999999
Q ss_pred cccccChhhHHhhhccC
Q 014886 399 HGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 399 lGield~~~l~~~~~~~ 415 (416)
||+++|++++++|....
T Consensus 377 lGv~~d~~~l~~~~~~~ 393 (410)
T 2qq6_A 377 LGLELDEEAAFEHRHEK 393 (410)
T ss_dssp GGCCBCHHHHHTTBCC-
T ss_pred CCceeCHHHHHhccccC
Confidence 99999999999998653
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-65 Score=503.99 Aligned_cols=325 Identities=17% Similarity=0.171 Sum_probs=289.5
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc--cCcccHHHHHHHHHHHHHHHhCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~--~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
+|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+. |++|+...+...+++..|.|+|++
T Consensus 1 ~MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~G~d 80 (342)
T 2okt_A 1 SLKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKS 80 (342)
T ss_dssp CBCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 389999999999999999999999999999999999999999999999988653 677777666666666569999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEee-cCCCHHHHHHHHHHHHHcC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI-PIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~G 201 (416)
+.+++.+|+.+... +| .+++++||||||||++||..|+ ++++|+++ +..+ +++ ++++++|
T Consensus 81 ~~~~~~l~~~l~~~-~g--~~~a~said~ALwDl~gk~~g~-----------~v~~~~~~~g~~~-e~~----~~~~~~G 141 (342)
T 2okt_A 81 FETYEAALKLVDSL-EN--TPAARATIVMALYQMFHVLPSF-----------SVAYGATASGLSN-KQL----ESLKATK 141 (342)
T ss_dssp BCSHHHHHHTTGGG-TT--CHHHHHHHHHHHHHTTCCCCCE-----------EEECEEEESSCCH-HHH----HHHHHHC
T ss_pred cCCHHHHHHHHHHh-hc--ChHHHHHHHHHHHHHhhhhhCc-----------eEeeeEEEecCCH-HHH----HHHHHcC
Confidence 99999999988654 44 3568999999999999999998 68899888 6644 444 6677899
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
|++||+|+| ++ |+++|++||++.|+++|++|+|++|++++| +++++|+++++ .|||||++++|++++++ +
T Consensus 142 ~~~~KiKvg--~~-d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~-~--- 211 (342)
T 2okt_A 142 PTRIKLKWT--PQ-IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQV--LYIEEPFKDISMLDEVA-D--- 211 (342)
T ss_dssp CSEEEEECC--TT-HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCE--EEEECCCSSGGGGGGSC-T---
T ss_pred CcEEEEEeC--HH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCCCccHHHHHH-h---
Confidence 999999999 68 999999999977999999999999999999 99999999986 69999999999988876 3
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++|++|++++++|++++
T Consensus 212 --~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaa~ 289 (342)
T 2okt_A 212 --GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARK 289 (342)
T ss_dssp --TSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHTT
T ss_pred --cCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcCCcccHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999997 999999999999999999999999999999999999998
Q ss_pred C--CCCceecC-cCCcccccCCCCcceeEeCcEEEcCCCCCcccccCh
Q 014886 361 L--GCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHW 405 (416)
Q Consensus 361 ~--~~~~~~e~-~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~ 405 (416)
+ ++ ++ +++..+.+|++.+++.++||++.+ +.||+|+++-.
T Consensus 290 ~~~~~----~l~~~~~~~~~d~~~~~~~~~~G~~~~-~~PGlg~~~~~ 332 (342)
T 2okt_A 290 GDYPG----DVTPAGYYFEQDVVAHSGILKEGRLEF-RPPLVDITQLQ 332 (342)
T ss_dssp SSSCC----BCCCTTSSCSSCSSTTTTEEETTEEEE-CCCCCCGGGCE
T ss_pred ccccc----ccCCchhhhhccccCCCceEECCEEEe-CcccCCHHHcC
Confidence 7 43 23 444445788888889999999999 88999998754
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-66 Score=521.03 Aligned_cols=357 Identities=18% Similarity=0.266 Sum_probs=305.0
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHH--HHHHHHH-HHHHHHhC
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ--TAMVKAS-EACEVLKE 120 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~--~~~~~~~-~~~~~l~g 120 (416)
|.|||++|+++++++|++.||.++. ++.++|+|+|+ |++||||+.+.+.+ .++.. .+...++ .++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~-----~~~~~V~v~td-G~~G~GE~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~G 73 (401)
T 2hzg_A 1 MSLKIDAVDLFYLSMPEVTDAADGS-----QDALLVRVAAG-GHIGWGECEAAPLP-SIAAFVCPKSHGVCRPVSDSVLG 73 (401)
T ss_dssp -CCBEEEEEEEEEECSSCCSSSCGG-----GEEEEEEEEET-TEEEEEEECSCHHH-HHHHHHCCCSBTTBCCGGGGTTT
T ss_pred CCCEEEEEEEEEEeccCCCcccccc-----ceEEEEEEEeC-CcEEEEeeecccCC-cccchhHHHHHHHHHHHHHHhCC
Confidence 5699999999999999999999886 67899999999 99999999875321 22211 1122234 37899999
Q ss_pred CCCCCHH-HHHHHHHhhC-CC-ChhhH--HHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeec-CCCHHHHHHH
Q 014886 121 SPAMALG-SVFGVVAGLL-PG-HQFAS--VRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIP-IVSPAEAAEL 193 (416)
Q Consensus 121 ~~~~~~~-~~~~~l~~~~-~g-~~~~~--a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~-~~~~~~~~~~ 193 (416)
+ +.+++ .+++.+...- .| ...++ +++||||||||+.||.+|+|||+||||.. +++|+|.++. ..+++++.+.
T Consensus 74 ~-~~~~~~~l~~~~~~~~~~g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~~ 152 (401)
T 2hzg_A 74 Q-RLDGPDDIARIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLER 152 (401)
T ss_dssp C-BCSSHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHHHH
Confidence 9 88875 3333221110 12 01246 89999999999999999999999999974 6899996544 6789999999
Q ss_pred HHHHHHcCCCEEEEe---cCCCh-hHHHHHHHHHHHh-CCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCCCceeeecCC
Q 014886 194 ASKYRKQGFTTLKLK---VGKNL-KEDIEVLRAIRAV-HPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQPV 266 (416)
Q Consensus 194 ~~~~~~~G~~~~KiK---vG~~~-~~d~~~v~avr~~-g~~~~L~vDaN~~w--~~~~A~~~~~~L~~~~l~~~~iEeP~ 266 (416)
+++++++||+.+|+| +|.++ +.|+++|++||++ |+++.|++|+|++| +.++|+++++.|+++++ .|||||+
T Consensus 153 a~~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i--~~iEqP~ 230 (401)
T 2hzg_A 153 ARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV--LWLEEPF 230 (401)
T ss_dssp HHHHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTC--SEEECCS
T ss_pred HHHHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC--CEEECCC
Confidence 999999999999999 99888 9999999999997 89999999999999 99999999999999997 4999999
Q ss_pred CCCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 267 HRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 267 ~~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+++|++++++|+ + ++++||++||++++..+++++++.+++|++++|++++| ++++++++++|+++|+++++| +
T Consensus 231 ~~~d~~~~~~l~----~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h-~ 305 (401)
T 2hzg_A 231 DAGALAAHAALA----GRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNH-T 305 (401)
T ss_dssp CTTCHHHHHHHH----TTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC-C
T ss_pred CccCHHHHHHHH----hhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecC-C
Confidence 999999999986 4 57899999999999999999999999999999999998 999999999999999999999 8
Q ss_pred CchHHHHHHHHHHHccCCCCceecCcCCc-ccccCCCCcceeEe-CcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVS-GAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 345 ~es~ig~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~-~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
.||++++++++|++++++|+.++|++... .+.+|++.+++.++ ||++.+|++||||+++|++.+++|..++
T Consensus 306 ~es~i~~~a~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 378 (401)
T 2hzg_A 306 FTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAEGLIRAPEAPGLGLQVAASALRRYLVET 378 (401)
T ss_dssp CSCHHHHHHHHGGGTTCTTCCEEEEESSCCHHHHHTBSSCCCCCTTSCBCSCSSSBTSCCBCHHHHHHHBCCE
T ss_pred CCcHHHHHHHHHHHHhCCCceeeeccCCcchHHHHhccCCceeccCCeEECCCCCcCCceECHHHHHhhhccc
Confidence 89999999999999999999888864211 13567777888899 9999999999999999999999998753
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-64 Score=505.82 Aligned_cols=348 Identities=17% Similarity=0.175 Sum_probs=292.3
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEEC---CCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHh
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS---NGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLK 119 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~---~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~ 119 (416)
|.|||++|+ .+++|++.||+++.++++.++.++|+|+|+ +|++||||+.+ +++.++.... +++ ++|.|+
T Consensus 4 m~mkI~~i~--~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~--~~~~~~~~~~---i~~~l~~~l~ 76 (392)
T 1tzz_A 4 MSVRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFN--SNGRYGQGGL---IRERFASRIL 76 (392)
T ss_dssp --CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEEC--CTTSCCCHHH---HHHTHHHHHH
T ss_pred CCcEEeEEE--EEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecC--CCchHHHHHH---HHHHHHHHHc
Confidence 779999999 788999999999999999999999999999 99999999986 3444444333 333 789999
Q ss_pred CCCC----------CCHHHHHHHHHhhCC--CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhC----C-CCceeeeeEe
Q 014886 120 ESPA----------MALGSVFGVVAGLLP--GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFG----G-VSNTITTDIT 181 (416)
Q Consensus 120 g~~~----------~~~~~~~~~l~~~~~--g~-~~~~a~said~ALwDl~gk~~g~pl~~LLG----g-~~~~v~~~~~ 181 (416)
|+++ .+++.+|+.|.+... +. ..++|++||||||||++||..|+|+|+||| | .++++++|.+
T Consensus 77 G~d~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~~~~v~~y~~ 156 (392)
T 1tzz_A 77 EADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAA 156 (392)
T ss_dssp TSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCCCCEEEEEEE
T ss_pred CCCchhhhcccccccCHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCcCCCeeEEEe
Confidence 9999 999999999976432 22 235799999999999999999999999999 8 5678999876
Q ss_pred ecC----CCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 182 IPI----VSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 182 ~~~----~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
.+. .+++++.+.+++++++||+++|||+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 236 (392)
T 1tzz_A 157 GGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDY 236 (392)
T ss_dssp CCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTS
T ss_pred CCcccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 543 378999999999999999999999995 889999999999997 89999999999999999999999999999
Q ss_pred CCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC----CCCEEEeCCCCCc-hHHHHHHHH
Q 014886 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN----LADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~----a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+ ++|++|+|++++| +++++++++
T Consensus 237 ~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~ 310 (392)
T 1tzz_A 237 PL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLE 310 (392)
T ss_dssp CC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHH
T ss_pred CC--CeecCCCChhhHHHHHHHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHH
Confidence 97 49999999999999999874 7899999999999999999999999 9999999999998 999999999
Q ss_pred HHHHcCCc---EEEccCCchHHHHHHHHHHHccCCCC---ceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 331 VVRASGLN---LMIGGMVETRLAMGFAGHLSAGLGCF---KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 331 ~A~~~gi~---~~~~~~~es~ig~~a~~hlaaa~~~~---~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
+|+++|++ +++|+. ++ +.+|+++++++. .++|++.++ .+++. ++.++||++.+|++||||+++|
T Consensus 311 ~A~~~gi~~~~~~~~~~-----~~-~~~hl~aa~~~~~~~~~~~~~~~~---~~~~~-~~~~~~G~~~~p~~PGlGv~~d 380 (392)
T 1tzz_A 311 VLKTHGWSPSRCIPHGG-----HQ-MSLNIAAGLGLGGNESYPDLFQPY---GGFPD-GVRVENGHITMPDLPGIGFEGK 380 (392)
T ss_dssp HHHHTTCCGGGBCCSCC-----BH-HHHHHHHHHTCSCEEECTTCSTTT---BSCST-TCCCBTTEEECCCCSBTSGGGC
T ss_pred HHHHCCCCCceEeecHH-----HH-HHHHHHHhCCCccccccccccchH---HhccC-CcceeCCEEECCCCCccCCccC
Confidence 99999999 999951 12 358999988875 335555542 34555 7888999999999999999999
Q ss_pred hhhHHhhhcc
Q 014886 405 WDNIAWGLQT 414 (416)
Q Consensus 405 ~~~l~~~~~~ 414 (416)
++.+++|..-
T Consensus 381 ~~~~~~~~~~ 390 (392)
T 1tzz_A 381 SDLYKEMKAL 390 (392)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999764
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=505.37 Aligned_cols=338 Identities=17% Similarity=0.191 Sum_probs=282.9
Q ss_pred EEeEEEEEEEE-----------------------ecccccee-----ecCceeeeeeEEEEEEEECCCceEEEEeccCCc
Q 014886 47 DVQRAENRPLN-----------------------VPLIAPFT-----IATSRLDQVENVAIRIELSNGCVGWGEAPVLPH 98 (416)
Q Consensus 47 kI~~v~~~~~~-----------------------~pl~~pf~-----~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~ 98 (416)
||++|+.|.+. .||++++. +|.+. +.++.++|||+|++|++||||+...
T Consensus 10 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ts~g~-~~~~~vlV~V~tddGi~G~Ge~~~~-- 86 (455)
T 3fxg_A 10 KIKAIRSFIIGGVGSGGDYHNVKGGHWLIDSDISTPASKWEQYKKSRTSWGI-NVLGSFLVEIEATDGTVGFATGFGG-- 86 (455)
T ss_dssp CEEEEEEEEECSSSCSSCTTCCCTTCHHHHSCCCCTTTTSGGGTSCTTTTTT-TSSCEEEEEEEETTSCEEEEEEECH--
T ss_pred cceeEEeEEeecccCCCCCCCCCCCcccccccccCccccccccccccccccc-ccceEEEEEEEECCCCEEEEeCcCC--
Confidence 78999988773 67777764 33333 2477899999999999999998641
Q ss_pred cCcccHHHHHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-
Q 014886 99 VTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV- 172 (416)
Q Consensus 99 ~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~- 172 (416)
+.. ...+ +.+.|.|+|+||.+++.+|+.|++.. .|+ ...+|+||||||||||+||.+|+|||+||||+
T Consensus 87 ---~~~---~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~ 160 (455)
T 3fxg_A 87 ---PPA---CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGAT 160 (455)
T ss_dssp ---HHH---HHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCS
T ss_pred ---HHH---HHHHHHHHHHHHCCCCcchHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCCcc
Confidence 221 1223 34789999999999999999998643 221 22468999999999999999999999999997
Q ss_pred CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHH
Q 014886 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~ 244 (416)
+++|++|.+. .+++ .++++||+++|+|++. ++++|+++|++||++ ||++.|++|+|++|++++
T Consensus 161 rd~vp~y~~g--~~~~-------~~~~~Gf~~~KlKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~ 231 (455)
T 3fxg_A 161 KERLDFYCTG--PEPT-------AAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSY 231 (455)
T ss_dssp CSEEEEEEES--SCHH-------HHHHHTCSCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHH
T ss_pred CCeeEEeecC--CCHH-------HHHHcCCCEEEEcCCCCcccccccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHH
Confidence 6789999763 2332 2457899999999963 357899999999998 899999999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-h
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 322 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i 322 (416)
|++++++|+++++ .|||||++++|++++++|++ ++ .+||++||++++..+++++++.+++|++|+|++++| +
T Consensus 232 Ai~~~~~Le~~~l--~~iEEPl~~dd~~~la~L~~----~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GGI 305 (455)
T 3fxg_A 232 TIELVKACLDLNI--NWWEECLSPDDTDGFALIKR----AHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGGL 305 (455)
T ss_dssp HHHHHHHTGGGCC--SEEECCSCGGGGGGHHHHHH----HCTTSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSCH
T ss_pred HHHHHHhcccCCc--ceecCCCCcchHHHHHHHHH----hCCCCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCCH
Confidence 9999999999997 59999999999999999975 44 589999999999999999999999999999999997 9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC--Cc-----ccccCCCCcceeEeCcEEEcC-
Q 014886 323 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-----LLSEDPVLDGYEVSGAVYKFT- 394 (416)
Q Consensus 323 ~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~--p~-----~~~~d~~~~~~~~~~G~~~~p- 394 (416)
+++++++++|+++|+++++|++. .+++||++++||+.++|+.. +. .+..+++.+.+.++||++.+|
T Consensus 306 tea~kIa~lA~a~Gv~v~~H~~~------~aslHlaaa~pn~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~dG~i~vp~ 379 (455)
T 3fxg_A 306 TELLKVAALAAAYDVPVVPHASG------PYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKGYLTTAD 379 (455)
T ss_dssp HHHHHHHHHHHTTTCCBCCCSCT------HHHHHHHTTCTTCCCEEEECCSTTSSSCCCTTGGGBSCCCCCTTSEEETGG
T ss_pred HHHHHHHHHHHHcCCEEEecchH------HHHHHHHHhCCCCceEeecccccccccccchhcccccCCCeeeCCEEeCCC
Confidence 99999999999999999999972 37899999999998888632 21 122455666667899999999
Q ss_pred -CCCCcccccChhhHHhhhcc
Q 014886 395 -NARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 395 -~~PGlGield~~~l~~~~~~ 414 (416)
++||||||+|++++++|...
T Consensus 380 ~d~PGLGvelde~~~~k~~~~ 400 (455)
T 3fxg_A 380 LDKPGFGLTINPAARAKLIPS 400 (455)
T ss_dssp GCSSBTCCCBCHHHHTTEEEG
T ss_pred CCCCccCcccCHHHHHHhccc
Confidence 99999999999999998643
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-62 Score=492.83 Aligned_cols=332 Identities=18% Similarity=0.230 Sum_probs=276.1
Q ss_pred EEEeEEEEEEEE--------------------ecccc-----ceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccC
Q 014886 46 VDVQRAENRPLN--------------------VPLIA-----PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT 100 (416)
Q Consensus 46 mkI~~v~~~~~~--------------------~pl~~-----pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~ 100 (416)
.||++|+.+.+. -|+.+ +++++.+ .+.++.++|||+|++|++||||+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ts~g-~~~~~~v~V~v~td~G~~G~Ge~~~----- 79 (404)
T 3ekg_A 6 PTIKQVRAFVLRGGGADYHDQGDGHWIDDHISTPMGKYPEYRQSRRSFG-INVLGTLVVEIEASDGNVGFAVTTG----- 79 (404)
T ss_dssp CBEEEEEEEEECSSTTSTTCCCTTCGGGSSCCCTTTTSGGGTSCTGGGT-TTSSCEEEEEEEETTSCEEEEEEEC-----
T ss_pred CceeeEEEEEecCCCCccCCCCCCceecccccCcchhhhhhcccccccC-cccccEEEEEEEECCCCEEEEeCCC-----
Confidence 378999988876 33322 2444555 4567899999999999999999863
Q ss_pred cccHHHHHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Cc
Q 014886 101 AEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SN 174 (416)
Q Consensus 101 ~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~ 174 (416)
++... ..+ +.+.|.|+|+++.+++.+|+.|.+.. .+ .....|+||||||||||+||.+|+|||+||||+ ++
T Consensus 80 g~~~~---~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~ 156 (404)
T 3ekg_A 80 GEPAA---YIVEKHLARFLEGARVTDIERIWDQMYNSTLYYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRD 156 (404)
T ss_dssp HHHHH---HHHHHTTHHHHTTSBTTCHHHHHHHHHHHHGGGCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSS
T ss_pred cHHHH---HHHHHHHHHHHCCCCcccHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHHcCCCCCC
Confidence 23221 123 34789999999999999999997632 12 223468999999999999999999999999997 57
Q ss_pred eeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH
Q 014886 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 246 (416)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~ 246 (416)
++++|.+.. +++ .++++||+++|+|++. ++++|+++|++||++ ||++.|++|+|++|++++|+
T Consensus 157 ~v~~y~~g~--~~~-------~~~~~Gf~~~K~Kv~~g~~~g~~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~ 227 (404)
T 3ekg_A 157 ELQFYATGA--RPD-------LAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYAT 227 (404)
T ss_dssp EEEEEEESS--CHH-------HHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred eeEEecCCC--CHH-------HHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHH
Confidence 899997632 343 2457899999999973 357899999999998 89999999999999999999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~--iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
+++++|+++++ .|||||++++|++++++|++ +++ +||++||++++..+++++++.+++|++|+|++++| ++
T Consensus 228 ~~~~~Le~~~l--~~iEeP~~~~d~~~~a~l~~----~~~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGit 301 (404)
T 3ekg_A 228 RLARGAREYGL--KWIEEALPPDDYWGYAELRR----NAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVT 301 (404)
T ss_dssp HHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHhhcCC--cEEecCCCcccHHHHHHHHH----hcCCCeEEEecCccCCHHHHHHHHHcCCCCeEecChhhcCCcc
Confidence 99999999997 59999999999999999986 444 55999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC--C-----cccccCCCCcceeEeCcEEEcC--
Q 014886 324 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--P-----LLLSEDPVLDGYEVSGAVYKFT-- 394 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~--p-----~~~~~d~~~~~~~~~~G~~~~p-- 394 (416)
++++++++|+++|+++++|++. .+++|+++++||+.++|+.. + ..+..+++.+++.++||++.+|
T Consensus 302 ea~kia~lA~a~gv~v~~h~~~------~a~~hl~aa~pn~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~dG~i~vP~~ 375 (404)
T 3ekg_A 302 ELLKISALADAHNALVVPHGSS------VYSYHFVATRQNSPFAEFLMMAPKADQVVPMFHPQLLGEPVPENGRMRLSRL 375 (404)
T ss_dssp HHHHHHHHHHHTTCEECCCCCT------HHHHHHHTTCTTCCSEEEECCSTTSCSCCCTTTTTEETCCCCBTTEEEGGGC
T ss_pred HHHHHHHHHHHcCCEEEecCcH------HHHHHHHHhCCCcceeeeccccccccccchhhhhcccCCCcccCCEEECCCC
Confidence 9999999999999999999962 27899999999998888642 1 1123456666777899999999
Q ss_pred CCCCcccccChhh
Q 014886 395 NARGHGGFLHWDN 407 (416)
Q Consensus 395 ~~PGlGield~~~ 407 (416)
++||||+|+|+++
T Consensus 376 ~~PGLGveld~~~ 388 (404)
T 3ekg_A 376 DQPGFGVTLNPEC 388 (404)
T ss_dssp CSSBTSCEECTTS
T ss_pred CCCcccceECccc
Confidence 9999999999986
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-63 Score=486.48 Aligned_cols=310 Identities=17% Similarity=0.211 Sum_probs=262.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||+ ++++++|++.||+++ ++++.++.++|||+|++|++||||+.+.+++++|+....+ .+.+
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~l------~~~l------- 64 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL------SDLR------- 64 (330)
T ss_dssp -CEE---EEEEEECBC-----------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHHHH------HHHH-------
T ss_pred cEEE---EEEEEeecCCCeEee-eEEEEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHHHH------HHHH-------
Confidence 7888 889999999999999 9999999999999999999999999988777777764321 2222
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeec-C--CCHHHHHHHHHHHHHcCC
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP-I--VSPAEAAELASKYRKQGF 202 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~-~--~~~~~~~~~~~~~~~~G~ 202 (416)
+. . ..+++++|||+||||++||..|+|+|+ || +++++|++++ . .+++++. +++++||
T Consensus 65 -------l~---~--~~~~a~said~AlwDl~gk~~g~Pl~~--Gg--~~v~~~~~~~~~~~~~~~~~~----~~~~~G~ 124 (330)
T 3caw_A 65 -------MG---R--MTTQIEQSIWLARRDALLRKEKKHVFD--GG--EKIKNNYLLSHFQDLKPGFLD----GLKNEGY 124 (330)
T ss_dssp -------HT---C--CCHHHHHHHHHHHHHHHHHHTTCBTTT--TS--CCCCBCEEECTTSCCCTTHHH----HHHHHTC
T ss_pred -------hc---c--chHHHHHHHHHHHHHHHHHHcCCcccc--CC--CceEEEEEecCCCCCCHHHHH----HHHHcCC
Confidence 11 1 225689999999999999999999999 87 7899999988 6 6787765 5677899
Q ss_pred CEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCC-CHHHHHHhH
Q 014886 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRD-DWEGLGHVS 278 (416)
Q Consensus 203 ~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~-d~~~~~~l~ 278 (416)
++||+|+|.++++|+++|++||+ |+++|++|+|++|+.++|++++++|++ +++ .|||||++++ |++++ |
T Consensus 125 ~~~KiKvg~~~~~d~~~v~avr~--~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l--~~iEqP~~~~~d~~~~--l- 197 (330)
T 3caw_A 125 NTVKVKMGRDLQKEADMLTHIAA--SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI--EYVEDPFPFDFHAWGE--A- 197 (330)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHH--TTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGE--EEEECCSSCCHHHHHH--H-
T ss_pred cEEEEecCCCHHHHHHHHHHHhC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCc--eEEECCCCCCccHHHH--H-
Confidence 99999999999999999999999 999999999999999999999999999 886 6999999999 98887 4
Q ss_pred HhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 279 ~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
+ ++ +||++||+ +..+++++++.+++|++|+|++++|++ +++++|+++|+++++||++||+|+.++++|++
T Consensus 198 ---~-~~-iPIa~dEs--~~~~~~~~i~~~a~d~v~~k~~~~Gi~---~i~~~A~~~gi~~~~~~~~es~ig~aa~~hla 267 (330)
T 3caw_A 198 ---R-KL-AKIALDNQ--YDKVPWGKIASAPFDVIVIKPAKTDVD---KAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVA 267 (330)
T ss_dssp ---T-TT-SCEEESTT--GGGCCTTTCSSCSCSEEEECTTTSCHH---HHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHH
T ss_pred ---H-hc-CcEEeCCC--CHHHHHHHHHcCCCCEEEechhhccHH---HHHHHHHHcCCcEEEeCccCcHHHHHHHHHHH
Confidence 3 57 99999999 999999999999999999999999987 99999999999999999999999999999999
Q ss_pred c----cCCCCce--ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 359 A----GLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 359 a----a~~~~~~--~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+ ++||+.. .+++++++ .+|++.+++.++||++.+|++||||++ +.+++|..
T Consensus 268 a~~~~a~~~~~~~~~dl~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlGv~---~~~~~~~~ 324 (330)
T 3caw_A 268 MELKDKYGDMILESGCLTHRLY-QMDSFAAELSTQGPYLLKNKGTGVGFD---KLLEALTW 324 (330)
T ss_dssp HHHHHHHGGGBCCBBCCCGGGB-CCCTTGGGCCEETTEECCCSSSBTSCH---HHHHTSCC
T ss_pred ccchhcCCCcccccccCCchhh-hcccccCCceeECCEEECCCCCCCCHH---HHHHHhhh
Confidence 9 8887432 34554443 678888888999999999999999999 89998875
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-61 Score=489.25 Aligned_cols=353 Identities=20% Similarity=0.241 Sum_probs=287.8
Q ss_pred EEEeEEEEEEEEeccccceeecCc--eeeeeeEEEEEEEECC--CceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~--~~~~~~~~iV~v~t~~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
|||++|+++.+++|++.||..+.. +...++.++|+|+|++ |++||||+.+.+ .+.+.+. ..++.+.|.|+|+
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g-~~~~~v~---~~i~~l~~~liG~ 77 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIG-RGNDVQT---AAVAALAEHVVGL 77 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEECS-TTHHHHH---HHHHTTHHHHTTC
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCCC-CCcHHHH---HHHHHHHHHHcCC
Confidence 899999999999999999866543 2234578999999998 999999998643 2334333 2345678999999
Q ss_pred CCCCHHH----HHHHHHhh----CCC---ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-----------------
Q 014886 122 PAMALGS----VFGVVAGL----LPG---HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS----------------- 173 (416)
Q Consensus 122 ~~~~~~~----~~~~l~~~----~~g---~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~----------------- 173 (416)
++.+++. +|+.|... +.+ .....|++||||||||++||..|+|||+||||..
T Consensus 78 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~~~~~~~~~~~~~~d~~ 157 (441)
T 2hxt_A 78 SVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDAL 157 (441)
T ss_dssp BHHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCHHHHHHHCCCTTCTTTC
T ss_pred ChHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCccccccccccccccccc
Confidence 9888764 56666431 112 1134689999999999999999999999999853
Q ss_pred -------------------------ceeeeeEee-c--CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHH
Q 014886 174 -------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 225 (416)
Q Consensus 174 -------------------------~~v~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~ 225 (416)
+.+|.|.+. + ..+++++.+.+++++++||++||||+|.+++.|+++|++||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~ 237 (441)
T 2hxt_A 158 TRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARA 237 (441)
T ss_dssp CHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHH
Confidence 257777542 3 237899999999999999999999999889999999999999
Q ss_pred h-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHH
Q 014886 226 V-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKK 303 (416)
Q Consensus 226 ~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~ 303 (416)
+ |+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++ ++||++||+++++.++++
T Consensus 238 a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~ 311 (441)
T 2hxt_A 238 AIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDI--AWIEEPTSPDDVLGHAAIRQ----GITPVPVSTGEHTQNRVVFKQ 311 (441)
T ss_dssp HHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCC--SCEECCSCTTCHHHHHHHHH----HHTTSCEEECTTCCSHHHHHH
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeCCCCHHHHHHHHHHHh----hCCCCCEEEeCCcCCHHHHHH
Confidence 7 8999999999999999999999999999997 49999999999999999975 44 699999999999999999
Q ss_pred HHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHH-HHHHHc-----cCCCC--ceecCcCCcc
Q 014886 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF-AGHLSA-----GLGCF--KFIDLDTPLL 374 (416)
Q Consensus 304 ~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a-~~hlaa-----a~~~~--~~~e~~~p~~ 374 (416)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+. ++++++ +.|+++ ..++. .++|+...
T Consensus 312 ~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~e~~~~-- 386 (441)
T 2hxt_A 312 LLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAG---GVGLCELVQHLAMADFVAITGKMEDRAIEFVDH-- 386 (441)
T ss_dssp HHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEECCCCC---STTHHHHHHHHHHHHHHHTTCCCTTCCEEECCS--
T ss_pred HHHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEEEecC---hHHHHHHHHHHHhcchhhccccccCcceeechh--
Confidence 999999999999999998 99999999999999999998863 344433 235442 22332 24444221
Q ss_pred cccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 375 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 375 ~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
..+.+.+++.++||++.+|++||||+++|++.+++|..+
T Consensus 387 -~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~ 425 (441)
T 2hxt_A 387 -LHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYP 425 (441)
T ss_dssp -SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHHHHHBTT
T ss_pred -hhhhccCCccccCCeEECCCCCCCCcccCHHHHHhccCC
Confidence 134456678899999999999999999999999999864
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=471.14 Aligned_cols=320 Identities=27% Similarity=0.342 Sum_probs=271.5
Q ss_pred eEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHH-HHhCCCCCCHH
Q 014886 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESPAMALG 127 (416)
Q Consensus 49 ~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~~~~~~ 127 (416)
.+++++.+++||+.||++|+|+.++++.++|+|+ |+|++||||+.+.|.+ +|+.+.+...++.+.+ .+.+.+ .+
T Consensus 5 r~l~~~~~r~pl~~pF~is~g~~t~~~~v~V~i~-d~G~~G~GE~~p~~~~-get~e~~~~~l~~~~~~~~~~~~---~~ 79 (329)
T 4gfi_A 5 RYLQATTERFAVAGSFTISRGTRTHADVVTCTIR-DGSFTGIGECVPYPRY-GESIEGVTADIEAMADRVAAGLT---RQ 79 (329)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEECCCGGG-TCCHHHHHHHHHTTHHHHHHTCC---HH
T ss_pred cEEEEEEEEEeccCcEEccCeEEEEeEEEEEEEE-ECCEEEEEeccCCCCC-CcCHHHHHHHHHHHhhhhccccc---hh
Confidence 6899999999999999999999999999999996 6899999999998876 4776666555554443 333432 22
Q ss_pred HHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEE
Q 014886 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLK 206 (416)
Q Consensus 128 ~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~K 206 (416)
. ..... ++ .+|++||||||||+.||..|+|+|+||||.. +++++|.+++..+++++..++.+ ..||+.+|
T Consensus 80 ~----~~~~~-~~--~~a~aaid~AlwDl~gk~~g~pl~~llgG~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~K 150 (329)
T 4gfi_A 80 E----LQQVM-KP--GAARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTAE--NAGRPLLK 150 (329)
T ss_dssp H----HHHHS-CS--SHHHHHHHHHHHHHHHHHHSCCHHHHHHSSCCCCEECCEEECCCCHHHHHHHHHH--TTTSSEEE
T ss_pred h----HHhhc-cc--HHHHHHHHHHHHHHHhhhcCCChhHHhCCCCCCceeeeecccCCChHHHHHHHHh--hccccEEE
Confidence 1 11122 22 3589999999999999999999999998874 58999999999999887766543 58999999
Q ss_pred EecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 207 iKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
+|+|. ++|+++++++|+.+|+++||||||++||+++|+++++.|+++++ .|||||++++|.+++.+ .++.
T Consensus 151 ik~g~--~~d~~~v~~vr~~g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~------~~~~ 220 (329)
T 4gfi_A 151 IKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKI--SLIEQPLPAGKDAMLAR------IEHP 220 (329)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTSEEEEECTTCCCTTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGG------SCCS
T ss_pred ecCCc--ccHHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHhhhhcCc--eEEEecCCCccHHHHHH------hcCC
Confidence 99985 56899999999999999999999999999999999999999997 59999999988766543 3678
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++||++++..|+.+. .+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+|+.+ .
T Consensus 221 ipia~dEs~~~~~d~~~~--~~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 295 (329)
T 4gfi_A 221 VLICADESVHSTEDLAGL--RDRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGT---A 295 (329)
T ss_dssp SEEEESTTCCTGGGSGGG--TTTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHTTTC---S
T ss_pred CCchhccCCCCHHHHHHH--hhccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcchhHHHHHHHHHHHhCC---C
Confidence 999999999999998764 468999999999998 9999999999999999999999999999999999998754 5
Q ss_pred eecCcCCcccccCCCCcceeEeCcEEEcCCCCCc
Q 014886 366 FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399 (416)
Q Consensus 366 ~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGl 399 (416)
++|+++|+++.+|+. +..+.||++.+|++|||
T Consensus 296 ~~dld~~~~l~~d~~--~~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 296 FADLDGPLLLAEDRD--PGLVYEGSLVYPARPEL 327 (329)
T ss_dssp EECCCHHHHBSSCCS--SCCCEETTEECCCCTTT
T ss_pred eeccCcchhhhccCC--CCcEEcCeEECCCCCCC
Confidence 788999988777753 34567888999999997
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-60 Score=465.71 Aligned_cols=319 Identities=28% Similarity=0.388 Sum_probs=267.0
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHh-CCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~-g~~~~~ 125 (416)
||++|+++++++|++.||+++.++.+.++.++|+|+ ++|++||||+.+.+.++ ++.......++.++|.++ |.+
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~g-~~~~~~~~~i~~~~~~l~~~~~--- 77 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLEKGLT--- 77 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGGGT-CCHHHHHHHHHTTHHHHHTTCC---
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCCcC-CCHHHHHHHHHHHHHHHhcCCC---
Confidence 478999999999999999999999899999999999 68999999999876553 444444444455677774 544
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceee-eeEeecCCCHHHHHHHHHHHHHcCCCE
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTIT-TDITIPIVSPAEAAELASKYRKQGFTT 204 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~G~~~ 204 (416)
++.+++ + .+ . .++++||||||||+.||..|+|+|+||||..++.+ ..++++..+++++.+++++++++||++
T Consensus 78 ~~~~~~-~---~~-~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 150 (324)
T 1jpd_X 78 REELQK-I---LP-A--GAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKL 150 (324)
T ss_dssp HHHHHH-H---SC-S--SHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHH-h---Cc-c--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceeEEeeCCCHHHHHHHHHHHHHcCCCE
Confidence 444432 2 22 1 35899999999999999999999999999754222 234566678999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 205 ~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
+|+|+|. ++|++++++||++.|++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++++++ +
T Consensus 151 ~KiKvg~--~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l------~ 220 (324)
T 1jpd_X 151 LKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------I 220 (324)
T ss_dssp EEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGSS------C
T ss_pred EEEEeCC--chHHHHHHHHHHhCCCCEEEEECcCCCCHHHHHHHHHHHHhCCC--CEEECCCCCCCHHHHHhc------c
Confidence 9999996 57999999999988899999999999999999999999999987 599999999999888876 3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++||++||++++..+++++++. +|++|+|++++| ++++++++++|+++|+++++||++|+++++++++|+++.+
T Consensus 221 ~~ipIa~dE~~~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~~la~~~-- 296 (324)
T 1jpd_X 221 HPLPICADESCHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQV-- 296 (324)
T ss_dssp CSSCEEESTTCSSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHGGGGGGC--
T ss_pred CCCCEEEcCCCCCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeCcchHHHHHHHHHHHhhcC--
Confidence 68999999999999999998854 899999999997 9999999999999999999999999999999999998765
Q ss_pred CceecCcCCcccccCCCCcceeEeCcEEEc
Q 014886 364 FKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 364 ~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~ 393 (416)
.++++++|+++.+|++ +++.++||++.+
T Consensus 297 -~~~~l~~~~~~~~d~~-~~~~~~~G~i~~ 324 (324)
T 1jpd_X 297 -SFADLDGPTWLAVDVE-PALQFTTGELHL 324 (324)
T ss_dssp -SEECCCGGGGBSSCCS-SCCEEETTEEEC
T ss_pred -CccCCCchhhhhccCC-CCcEEECCEEeC
Confidence 4778888877778886 678899998864
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-57 Score=457.81 Aligned_cols=307 Identities=16% Similarity=0.215 Sum_probs=256.9
Q ss_pred eeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhCC---C--ChhhHHHH
Q 014886 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLP---G--HQFASVRA 147 (416)
Q Consensus 73 ~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~~---g--~~~~~a~s 147 (416)
.++.++|+|+|++|++||||+.. ++.... ...+.+.|.|+|+++.+++.+|+.|.+... + ...++|++
T Consensus 68 ~~~~v~V~v~td~G~~G~GE~~~-----g~~~~~--~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~~~g~~~~~~~A~s 140 (415)
T 2p3z_A 68 VLGTLIVEVEAENRQTGFAVSTA-----GEMGCF--IVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTIS 140 (415)
T ss_dssp SSCEEEEEEEETTSCEEEEEEEC-----HHHHHH--HHHHTTHHHHTTSBTTCHHHHHHHHHHHHTTTSTTSSHHHHHHH
T ss_pred cceEEEEEEEECCCCEEEEEecC-----CHHHHH--HHHHHHHHHHCCCChhhHHHHHHHHHHhhhcccCCCcchHHHHH
Confidence 56799999999999999999853 232211 112347899999999999999999865421 2 22356999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-------ChhHHHHH
Q 014886 148 AVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEV 219 (416)
Q Consensus 148 aid~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~ 219 (416)
||||||||++||..|+|||+||||. ++++++|.+. .++++ ++++||+++|+|+|. ++++|+++
T Consensus 141 aid~ALwDl~ak~~g~Pl~~lLGG~~~~~vp~y~~g--~~~~~-------~~~~G~~~~KiK~g~g~~~G~~~~~~d~~~ 211 (415)
T 2p3z_A 141 CVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATG--ARPDL-------AKEMGFIGGKMPTHWGPHDGDAGIRKDAAM 211 (415)
T ss_dssp HHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEEEEES--SCHHH-------HHHHTCSEEEEECCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeeecC--CCHHH-------HHHhCcceEEEecccCcccccccHHHHHHH
Confidence 9999999999999999999999996 5689998763 24432 346899999999962 46789999
Q ss_pred HHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC--CeEEeCCCCC
Q 014886 220 LRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCR 296 (416)
Q Consensus 220 v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~--iPIa~dEs~~ 296 (416)
|++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++ +++ +||++||+++
T Consensus 212 v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i--~~iEqPl~~~d~~~~~~l~~----~~~~~ipIa~dE~~~ 285 (415)
T 2p3z_A 212 VADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNL--KWIEECLPPQQYEGYRELKR----NAPAGMMVTSGEHHG 285 (415)
T ss_dssp HHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTCC
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC--ceEeCCCCcchHHHHHHHHH----hcCCCCcEEcCCCCC
Confidence 9999997 8999999999999999999999999999987 59999999999999999985 456 8999999999
Q ss_pred CHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC---
Q 014886 297 SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--- 372 (416)
Q Consensus 297 ~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p--- 372 (416)
+..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++ ..+++|++++++|+.++|+...
T Consensus 286 ~~~~~~~~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~------~~a~~hlaaa~p~~~~~e~~~~~~~ 358 (415)
T 2p3z_A 286 TLQSFRTLAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS------SVYSHHAVITFTNTPFSEFLMTSPD 358 (415)
T ss_dssp SHHHHHHHHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC------HHHHHHHHTTCTTCCCEEEECCSTT
T ss_pred CHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh------HHHHHHHHHhCCCCccccccccccc
Confidence 999999999999 999999999997 99999999999999999999875 1368999999999988875321
Q ss_pred ----cccccCCCCcceeEeCcEEEcC--CCCCcccccChhhH
Q 014886 373 ----LLLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 408 (416)
Q Consensus 373 ----~~~~~d~~~~~~~~~~G~~~~p--~~PGlGield~~~l 408 (416)
..+..+.+.+++.++||++.+| ++||||+++|++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~G~l~~p~P~~PGLGveld~~~~ 400 (415)
T 2p3z_A 359 CSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCH 400 (415)
T ss_dssp SSSCCCTTTTTEETCCCCBTTEEEGGGGCSSBTSCEECTTSC
T ss_pred cccccchhhhhccCCCeeECCEEECCCCCCCCcceeECHHHH
Confidence 1112334444456789999998 99999999999985
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=443.77 Aligned_cols=299 Identities=21% Similarity=0.239 Sum_probs=260.3
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (416)
||++|+++++++|++.||.++.++++.++.++|||+|+ |++||||+.+.+++++|+...+...++. +.+.++|+ .+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~--~~ 78 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD--CE 78 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC--CC
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh--hh
Confidence 68999999999999999999999999999999999996 9999999999888888877666655554 67888887 22
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEE
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 205 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 205 (416)
+ .+ .+++++||||||||++||..|+|+| +.+++| ..+++++.++++++ +||+++
T Consensus 79 l-----------~~--~~~a~~aid~ALwDl~gk~~g~p~~-------~~v~~~----~~~~~~~~~~a~~~--~G~~~~ 132 (322)
T 1r6w_A 79 L-----------PQ--MPSVAFGVSCALAELTDTLPQAANY-------RAAPLC----NGDPDDLILKLADM--PGEKVA 132 (322)
T ss_dssp C-----------CS--SHHHHHHHHHHHHHHTTCSCCCSCC-------CCCCEE----CSCHHHHHHHHHTC--CSSEEE
T ss_pred c-----------cc--ChHHHHHHHHHHHHhcCCCCCCCcc-------ceEEEe----CCCHHHHHHHHHHh--CCCceE
Confidence 1 22 3568999999999999999999875 335555 45788887777664 799999
Q ss_pred EEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCceeeecCCCCCCHHHHHHhHHhh
Q 014886 206 KLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVSHIA 281 (416)
Q Consensus 206 KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (416)
|+|+|. ++++|++++++||++.|+++|++|+|++|+.++|+++++.|+++ ++ .|||||++ +++++++|++
T Consensus 133 KiKvG~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~--~~~~~~~l~~-- 206 (322)
T 1r6w_A 133 KVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCK--TRDDSRAFAR-- 206 (322)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGE--EEEECCBS--SHHHHHHHHH--
T ss_pred EEEeCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCe--eEEECCCC--ChHHHHHHHH--
Confidence 999996 89999999999999888999999999999999999999999998 76 69999997 4788988875
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 282 r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
++++||++||++++. ++ ++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+.++++||+++
T Consensus 207 --~~~ipIa~dE~~~~~-~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa~~hlaa~ 282 (322)
T 1r6w_A 207 --ETGIAIAWDESLREP-DF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAW 282 (322)
T ss_dssp --HHCCCEEESGGGGST-TC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEeCCCCCCh-hH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECccccHHHHHHHHHHHHh
Confidence 678999999999994 56 6668899999999999997 999999999999999999999999999999999999999
Q ss_pred CCCCceecCcCCcccccCCCCcce
Q 014886 361 LGCFKFIDLDTPLLLSEDPVLDGY 384 (416)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~ 384 (416)
+++..+++++++.++.+|++.+++
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~~~~~ 306 (322)
T 1r6w_A 283 LTPDTIPGLDTLDLMQAQQVRRWP 306 (322)
T ss_dssp HCTTSCCBCTTGGGBSCEESSCCT
T ss_pred cCCCCccCCCchhhhhhccccCCc
Confidence 988788899998877778766554
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-56 Score=450.44 Aligned_cols=308 Identities=17% Similarity=0.182 Sum_probs=258.0
Q ss_pred ceeeeeeEEEEEEEECCCceEEEEeccC---------CccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhhCC
Q 014886 69 SRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGLLP 138 (416)
Q Consensus 69 ~~~~~~~~~iV~v~t~~G~~G~GE~~~~---------~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~ 138 (416)
++.+.++.++|+|+|++|++||||+.+. |.|++++... .+++ +.|.|+|+++.+++.+|+.|.....
T Consensus 45 ~~~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~~~~~~---~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~ 121 (413)
T 1kko_A 45 SVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIP---FLNDHIKPLLEGRDVDAFLPNARFFDKLRI 121 (413)
T ss_dssp SSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHH---HHHHHTHHHHTTCBCSCSHHHHHHHHHCEE
T ss_pred eEEEecceEEEEEEECCCCEEEEEecccccccccccCccccHHHHHH---HHHHHHHHHHcCCChHhHHHHHHHHHhhhc
Confidence 4467789999999999999999999876 5555554433 3343 7899999999999999999875432
Q ss_pred -CC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CceeeeeEeecC---CCHHHHHHHHHHHHHcC-CCEEE
Q 014886 139 -GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLK 206 (416)
Q Consensus 139 -g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~------~~~v~~~~~~~~---~~~~~~~~~~~~~~~~G-~~~~K 206 (416)
+. ..+++++||||||||+.||..|+|+|+||||. +.+||+|.+.+. .+++++.+++.+++++| |++||
T Consensus 122 ~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~~g~~~~~~~~~~~~~~~~~~~~G~~~~iK 201 (413)
T 1kko_A 122 DGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVE 201 (413)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCC
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEecCccccCCHHHHHHHHHHHHhCCCccEEE
Confidence 21 22578999999999999999999999999984 457888876332 35677777777778899 99999
Q ss_pred EecCCChhH-------HHHHHHHHHHh-CCCcEEEEeCCC------CCCHHHHHHHHHHHHhCCCCce-eeecCCC----
Q 014886 207 LKVGKNLKE-------DIEVLRAIRAV-HPDSSFILDANE------GYKPQEAVEVLEKLYEMGVTPV-LFEQPVH---- 267 (416)
Q Consensus 207 iKvG~~~~~-------d~~~v~avr~~-g~~~~L~vDaN~------~w~~~~A~~~~~~L~~~~l~~~-~iEeP~~---- 267 (416)
+|+|.+.+. |+++|++||++ ++++.|++|+|+ +|++++|+++++.|+++++.+. |||||++
T Consensus 202 ~KvG~~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~iEqP~~~~~~ 281 (413)
T 1kko_A 202 EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNK 281 (413)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSH
T ss_pred EecCCChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEEECCcCCCCC
Confidence 999976544 45999999997 789999999999 9999999999999999654322 9999999
Q ss_pred CCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 268 RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
++|++++++|++.+.. .+++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 282 ~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~ 361 (413)
T 1kko_A 282 PDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTC 361 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCT
T ss_pred cccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEecCCC
Confidence 6799999999852110 07899999999999999999999999999999999998 999999999999999999999996
Q ss_pred -chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChh
Q 014886 346 -ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (416)
Q Consensus 346 -es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~ 406 (416)
||+++.++++||++++++ ..+|++||+|++.++.
T Consensus 362 ~et~i~~aa~~hlaaa~~~---------------------------~~ip~kpG~g~~~~~~ 396 (413)
T 1kko_A 362 NETEISARTCVHVALAARP---------------------------MRMLIKPGMGFDEGLN 396 (413)
T ss_dssp TSCHHHHHHHHHHHHHHCC---------------------------SEEECCSCSSSHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCC---------------------------CcccCCCCCCCCccHH
Confidence 999999999999997743 2468899999987754
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=444.66 Aligned_cols=305 Identities=15% Similarity=0.197 Sum_probs=258.0
Q ss_pred ccceeecCcee-eeeeEEEEEEEECCCceEEEEeccCCc--cCc----ccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHH
Q 014886 61 IAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPH--VTA----EDQQTAMVKASE-ACEVLKESPAMALGSVFGV 132 (416)
Q Consensus 61 ~~pf~~a~~~~-~~~~~~iV~v~t~~G~~G~GE~~~~~~--~~~----e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~ 132 (416)
..||+++.++. +.++.++|+|+|++|++||||+.+.+. ++. ++...+...+++ ++|.|+|+++.+++.+|+.
T Consensus 36 ~~P~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~ 115 (413)
T 1kcz_A 36 GSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEE 115 (413)
T ss_dssp SCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHH
T ss_pred CCCEEcccceEeecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 56899998888 889999999999999999999987642 211 233444445554 7899999999999999999
Q ss_pred HHhhC-CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC------CCceeeeeEeecC---CCHHHHHHHHHHHHHcC
Q 014886 133 VAGLL-PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGG------VSNTITTDITIPI---VSPAEAAELASKYRKQG 201 (416)
Q Consensus 133 l~~~~-~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg------~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~G 201 (416)
|.... .|. ..+++++||||||||+.||..|+|+|+|||| .+.++|+|.+.+. .+++++.+++++++++|
T Consensus 116 l~~~~~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~g~~~~~~~~~~~~~a~~~~~~G 195 (413)
T 1kcz_A 116 FDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHA 195 (413)
T ss_dssp HHHCEETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEEC
T ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEecCccccCCHHHHHHHHHHHHHhc
Confidence 95432 221 2357899999999999999999999999997 4568999876552 35677888888888899
Q ss_pred -CCEEEEecCCC---hhH----HHHHHHHHHHh-CCCcEEEEeCCCC------CCHHHHHHHHHHHHhC--CCCceeeec
Q 014886 202 -FTTLKLKVGKN---LKE----DIEVLRAIRAV-HPDSSFILDANEG------YKPQEAVEVLEKLYEM--GVTPVLFEQ 264 (416)
Q Consensus 202 -~~~~KiKvG~~---~~~----d~~~v~avr~~-g~~~~L~vDaN~~------w~~~~A~~~~~~L~~~--~l~~~~iEe 264 (416)
|++||+|+|.+ +.+ |+++|++||+. ++++.|+||+|++ |++++|+++++.|+++ ++. .||||
T Consensus 196 ~~~~~KiKvG~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~-~~iEq 274 (413)
T 1kcz_A 196 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFH-LRIEG 274 (413)
T ss_dssp CCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSC-EEEEC
T ss_pred chhheeeccCCCccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcc-eEEec
Confidence 99999999965 444 89999999997 7899999999999 9999999999999998 652 59999
Q ss_pred CCCC----CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 265 PVHR----DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 265 P~~~----~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
|++. +|++++++|++.++ +.+++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 275 P~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~gi~ 354 (413)
T 1kcz_A 275 PMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMG 354 (413)
T ss_dssp SBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCE
Confidence 9964 48999999875110 017899999999999999999999999999999999997 99999999999999999
Q ss_pred EEEcc-CCchHHHHHHHHHHHccCCCCce
Q 014886 339 LMIGG-MVETRLAMGFAGHLSAGLGCFKF 366 (416)
Q Consensus 339 ~~~~~-~~es~ig~~a~~hlaaa~~~~~~ 366 (416)
+++|| ++||++++++++||+++++++.+
T Consensus 355 ~~~~~~~~es~i~~~a~~hlaaa~~~~~i 383 (413)
T 1kcz_A 355 AYCGGTCNETNRSAEVTTNIGMACGARQV 383 (413)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTCSEE
T ss_pred EEecCCCCCCHHHHHHHHHHHhcCCCCce
Confidence 99998 78999999999999999887543
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=428.75 Aligned_cols=289 Identities=22% Similarity=0.254 Sum_probs=245.4
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+.++.|+...++..++.+.+.+ ++.+++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~~~~~ 80 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEIMATI 80 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHHHTTS
T ss_pred EEEEEEEEeecCCCcEecCEEEEeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHHHHHH
Confidence 789999999999999999999999999999999999999999999888888887766554333333322 33323222
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
|+. ...+++||||||| +.|| ||++.++ +.|... ..+++++.+++++++++||++||||+
T Consensus 81 ~~~---------~~~a~~aid~Al~-l~gk---------lgg~~~~-~~y~~~-~~~~e~~~~~a~~~~~~G~~~~KiKv 139 (332)
T 2ozt_A 81 PEA---------LPAAQFGFATAWQ-SVGR---------LPYRVRP-WPICAL-LGSGQAALEQWQQSWQRGQTTFKWKV 139 (332)
T ss_dssp CTT---------CHHHHHHHHHHHH-HTTT---------CSCCCCC-CCBCEE-ECTGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HHH---------hHHHHHHHHHHHH-Hhcc---------cCCCCCC-cceEEe-cCChHHHHHHHHHHHHcCCcEEEEEe
Confidence 211 1457999999999 8888 4554334 555432 35788899999999999999999999
Q ss_pred CC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 210 G~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
|. ++++|+++|++||++ ++++.|++|+|++|++++|+++++.|+++ ++ .|||||++++|++++++|++ +
T Consensus 140 g~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~d~~~~~~l~~----~ 213 (332)
T 2ozt_A 140 GVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI--EYVEQPLPPDQWQALLSLAQ----T 213 (332)
T ss_dssp SSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTE--EEEECCSCTTCHHHHHHHHH----H
T ss_pred CCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCc--ceeECCCCCCCHHHHHHHHH----h
Confidence 96 689999999999998 78999999999999999999999999999 76 69999999999999999975 6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHc--CCcEEEccCCchHHHHHHHHHHHccC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~--gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
+++||++||++++..+++++++.+++|++|+|++++| ++ +++++|+++ |+++++|+++||+|++++++||++++
T Consensus 214 ~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (332)
T 2ozt_A 214 VTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETW 290 (332)
T ss_dssp CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCcchHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999997 76 778899999 99999999999999999999999999
Q ss_pred CCCceecCcC
Q 014886 362 GCFKFIDLDT 371 (416)
Q Consensus 362 ~~~~~~e~~~ 371 (416)
+|...+.+++
T Consensus 291 ~~~~~~gl~t 300 (332)
T 2ozt_A 291 QPCHALGFGV 300 (332)
T ss_dssp CCCSCBBCCC
T ss_pred CCCcCCcCCc
Confidence 8754444544
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-52 Score=406.58 Aligned_cols=288 Identities=26% Similarity=0.367 Sum_probs=233.5
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|++.||+ +.+.++.++|+ |.+||||+.+.+.++.+ . .
T Consensus 2 ~i~~~~~~~Pl~~pf~----~~~~r~~~lV~-----G~~G~GE~~p~~~~~~~---~-------~--------------- 47 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFR----GITVREGMLVR-----GAAGWGEFSPFAEYGPR---E-------C--------------- 47 (327)
T ss_dssp CCSEEEEEEEEEEEET----TEEEEEEEEEE-----CSSCEEEECCCTTCCHH---H-------H---------------
T ss_pred EEEEEEEEEeeccCce----eeeEEEEEEEE-----cCEEEEEecCCCCCCHH---H-------H---------------
Confidence 5788999999999997 34568888884 99999999998766421 0 0
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
+ ..+++|||||||| +| |+.++++++|.+++..+++++.+.++ ++||++||+|+
T Consensus 48 ~------------~~~~aaid~Al~~-------~P-----g~~r~~v~~~~ti~~~~~e~~~~~~~---~~G~~~~KiKv 100 (327)
T 2opj_A 48 A------------RWWAACYEAAELG-------WP-----APVRDTVPVNATVPAVGPEEAARIVA---SSGCTTAKVKV 100 (327)
T ss_dssp H------------HHHHHHHHHHHTC-------CC-----CCSCSEEEBCEEECSCCHHHHHHHHH---HHCCSEEEEEC
T ss_pred H------------HHHHHHHHHHHhC-------CC-----cCCCCeeEEeEEeCCCCHHHHHHHHH---HCCCCEEEEEe
Confidence 0 1258999999974 56 56678999999999889888655443 58999999999
Q ss_pred CC---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC
Q 014886 210 GK---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285 (416)
Q Consensus 210 G~---~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~ 285 (416)
|. ++++|+++|++||++ ||++.|+||+|++|++++|+++++.|+++++ .|||||++ +++++++|++ ++
T Consensus 101 g~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEqP~~--~~~~~~~l~~----~~ 172 (327)
T 2opj_A 101 AERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFEL--EYVEQPCA--TVDELAEVRR----RV 172 (327)
T ss_dssp CC------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECCSS--SHHHHHHHHH----HC
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--cEEeCCCC--CHHHHHHHHh----hC
Confidence 84 578999999999998 8999999999999999999999999999986 69999997 4889999875 68
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
++||++||++++..++.++++.+++|++|+|++++| ++++++++ +.+|+++++||++||+|++++++|++++++++
T Consensus 173 ~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia---~~~gi~~~~~~~~es~ig~aa~~hlaaa~~~~ 249 (327)
T 2opj_A 173 SVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLA---EECGLPVVVSSAVETSVGLAAGVALAAALPEL 249 (327)
T ss_dssp SSCEEC-----------CTTTTTCCSBEEECHHHHTSHHHHHHHH---HHTCSCEEEBCCSCCHHHHHHHHHHHHHSSCC
T ss_pred CCCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH---HHcCCcEEEcCCCcCHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999997 99999875 45799999999999999999999999999997
Q ss_pred ce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhcc
Q 014886 365 KF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQT 414 (416)
Q Consensus 365 ~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~ 414 (416)
.+ +++.....+.+|++.+++.++||++.+| |+++|++++++|..+
T Consensus 250 ~~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d~~~l~~~~~~ 295 (327)
T 2opj_A 250 PYACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVSEQRLAEVEID 295 (327)
T ss_dssp SSCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBCHHHHHHTEEC
T ss_pred ccccccCchhhhhhhcccCCCeeECCEEECC-----CcccCHHHHHhccCC
Confidence 55 4554323456788878889999999998 799999999999764
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=411.07 Aligned_cols=302 Identities=18% Similarity=0.244 Sum_probs=249.8
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC---------------ccCcccHHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---------------HVTAEDQQTAMVK 110 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~---------------~~~~e~~~~~~~~ 110 (416)
|||++|+++.+..+. + ++.++|+|+|++|++|||++.... .|.+++...+...
T Consensus 9 MkI~~i~~~~v~~s~--------g----~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~~ 76 (427)
T 2pa6_A 9 FEIKDIVAREVIDSR--------G----NPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVEN 76 (427)
T ss_dssp GBEEEEEEEEEECTT--------S----CEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHHHHHH
T ss_pred CEEEEEEEEEEEcCC--------C----CceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHHHHHH
Confidence 899999999998542 1 467999999999999999764310 1344445555555
Q ss_pred HHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe--e
Q 014886 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I 182 (416)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~--~ 182 (416)
+++ +.|.|+|+++.+++.+|+.|.+.. .+.....|++||||||||+.||.+|+|||+||||. ++++|+|+. +
T Consensus 77 i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~~~~vp~~~~~~~ 156 (427)
T 2pa6_A 77 VNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFNSYVMPVPMMNVI 156 (427)
T ss_dssp HHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSCCCEECEECEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccchhccc
Confidence 664 899999999999999999987631 12222468999999999999999999999999997 557887642 1
Q ss_pred -cC---------------CCHHHHHHHHHHHHHcCCCEEEE----ecCC-------------ChhHHHHHHHHHHHh---
Q 014886 183 -PI---------------VSPAEAAELASKYRKQGFTTLKL----KVGK-------------NLKEDIEVLRAIRAV--- 226 (416)
Q Consensus 183 -~~---------------~~~~~~~~~~~~~~~~G~~~~Ki----KvG~-------------~~~~d~~~v~avr~~--- 226 (416)
+. ..++++.+++.++.++||+++|+ |+|. +++.|+++|++||++
T Consensus 157 ~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~~ 236 (427)
T 2pa6_A 157 NGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKK 236 (427)
T ss_dssp ECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHHH
T ss_pred cccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHHH
Confidence 11 12256778888889999999998 7442 367899999999984
Q ss_pred -CC--CcEEEEeC-------CCCC-------CHHHHHHHHH-HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 227 -HP--DSSFILDA-------NEGY-------KPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 227 -g~--~~~L~vDa-------N~~w-------~~~~A~~~~~-~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
|+ ++.|+||+ |++| +.++|++++. .|+++++ .|||||++++|++++++|++ ++++|
T Consensus 237 ~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ip 310 (427)
T 2pa6_A 237 AGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPI--VSIEDPFHEEDFEGFAMITK----ELDIQ 310 (427)
T ss_dssp HTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HSSSE
T ss_pred hCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCC--cEEEcCCChhhHHHHHHHHh----hCCCe
Confidence 66 89999999 6665 8999999965 8999986 69999999999999999985 58899
Q ss_pred EEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCc
Q 014886 289 VAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 289 Ia~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~ 365 (416)
|++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.++++|++++.+++.
T Consensus 311 Ia~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~~~~ 390 (427)
T 2pa6_A 311 IVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIK 390 (427)
T ss_dssp EEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCSEEE
T ss_pred EEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCCccc
Confidence 999999 556999999999999999999999997 999999999999999999996655 99999999999999988764
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=409.65 Aligned_cols=300 Identities=20% Similarity=0.272 Sum_probs=252.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc-----------------cCcccHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAM 108 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~-----------------~~~e~~~~~~ 108 (416)
|||++|+.+.+- .+. .++.++|+|+|++|++| ||+.+.+. |.++++..+.
T Consensus 1 ~~I~~v~~~~v~--------~sr----g~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~ 67 (431)
T 2fym_A 1 SKIVKIIGREII--------DSR----GNPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGVTKAV 67 (431)
T ss_dssp CBEEEEEEEEEE--------CTT----SCEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CeeEEEEEEEEE--------cCC----CCeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccHHHHH
Confidence 789999998873 122 22579999999999999 99987643 2333355666
Q ss_pred HHHHH-HHHHHhCCCCCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ce----eee
Q 014886 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NT----ITT 178 (416)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~----v~~ 178 (416)
..+++ +.|.|+|+++.+++.+|+.|..... +...+.|++||||||||+.||.+|+|||+||||.. +. +|+
T Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~~~~~~pv 147 (431)
T 2fym_A 68 AAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPV 147 (431)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCCCCE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcccccccccccc
Confidence 66664 8999999999999999998876311 12224689999999999999999999999999953 33 776
Q ss_pred eE------------eecCCC----H--HHHHHHHHHHHHcCCCEEE---------EecCC------ChhHHHHHHHHHHH
Q 014886 179 DI------------TIPIVS----P--AEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIRA 225 (416)
Q Consensus 179 ~~------------~~~~~~----~--~~~~~~~~~~~~~G~~~~K---------iKvG~------~~~~d~~~v~avr~ 225 (416)
+. +++..+ | +++.+++.++.++||+++| +|+|. +++.|+++|++||+
T Consensus 148 ~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~gg~~~~~~~d~~~l~~vre 227 (431)
T 2fym_A 148 PMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAE 227 (431)
T ss_dssp ECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHH
T ss_pred eeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCcccCCCCCccchHHHHHHHHH
Confidence 53 222223 4 6677888888999999999 99985 77889999999998
Q ss_pred h--------CCCcEEEEeC----------------C-CCCCHHHHHHHHHHHHh-CCCCceeeecCCCCCCHHHHHHhHH
Q 014886 226 V--------HPDSSFILDA----------------N-EGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 226 ~--------g~~~~L~vDa----------------N-~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
+ |+++.|++|+ | ++|+.++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 228 ai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i--~~iEePl~~~d~~~~~~l~~ 305 (431)
T 2fym_A 228 AVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTK 305 (431)
T ss_dssp HHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred HHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcccHHHHHHHHH
Confidence 5 5789999999 9 99999999999999998 986 69999999999999999985
Q ss_pred hhhccC--CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHH
Q 014886 280 IAKDKF--GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFA 354 (416)
Q Consensus 280 ~~r~~~--~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~ 354 (416)
++ ++||++|| +++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++.+++
T Consensus 306 ----~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~ 381 (431)
T 2fym_A 306 ----VLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIAD 381 (431)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----HhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHH
Confidence 45 89999999 9999999999999999999999999998 999999999999999999999888 899998888
Q ss_pred HHHHccCCCC
Q 014886 355 GHLSAGLGCF 364 (416)
Q Consensus 355 ~hlaaa~~~~ 364 (416)
+|+++..++.
T Consensus 382 la~a~~~~~i 391 (431)
T 2fym_A 382 LAVGTAAGQI 391 (431)
T ss_dssp HHHHTTCEEE
T ss_pred HHHhcCCCcc
Confidence 8888766543
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=390.71 Aligned_cols=302 Identities=18% Similarity=0.256 Sum_probs=249.1
Q ss_pred eeeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc-----------------cCcccHH
Q 014886 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQ 105 (416)
Q Consensus 43 ~~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~-----------------~~~e~~~ 105 (416)
-|+ .|++|..+.+ -.|++. +.++|+|+|++|++| ||+.+.+. |.++++.
T Consensus 10 ~~~-~i~~~~~r~i--------~dsrg~----~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~ 75 (444)
T 1w6t_A 10 HMS-IITDVYAREV--------LDSRGN----PTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQ 75 (444)
T ss_dssp CTT-BEEEEEEEEE--------ECTTSC----EEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCH
T ss_pred chh-hcceeEEEEE--------EcCCCC----ceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHH
Confidence 344 4888887665 345444 789999999999999 99987542 2233455
Q ss_pred HHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhhC--C--CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Cceeeee
Q 014886 106 TAMVKASE-ACEVLKESPAMALGSVFGVVAGLL--P--GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTD 179 (416)
Q Consensus 106 ~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~--~--g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~ 179 (416)
.+...+++ +.|.|+|+++.+++.+|+.|.... + +...+.|++||||||||+.||.+|+|||+||||. ++.+|+|
T Consensus 76 ~a~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~vp~~ 155 (444)
T 1w6t_A 76 KAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTP 155 (444)
T ss_dssp HHHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTTCCEECEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCccccccc
Confidence 55555654 899999999999999999987631 1 1222468999999999999999999999999996 6788887
Q ss_pred Ee--e-cC---------------CCHHHHHHHHHHHHHcCCCEEE---------EecCC------ChhHHHHHHHHHHHh
Q 014886 180 IT--I-PI---------------VSPAEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIRAV 226 (416)
Q Consensus 180 ~~--~-~~---------------~~~~~~~~~~~~~~~~G~~~~K---------iKvG~------~~~~d~~~v~avr~~ 226 (416)
.+ + +. ...++..+++.++.++||+++| +|+|. +++.|+++|++||++
T Consensus 156 ~~~~~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~~~~d~~~l~avrea 235 (444)
T 1w6t_A 156 MMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAA 235 (444)
T ss_dssp CEEEEECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHH
T ss_pred ccceeccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCchHhHHHHHHHHHHH
Confidence 53 1 10 0113456777778889999999 78884 678899999999985
Q ss_pred --------CCCcEEEEeC---------CCC-------------CCHHHHHHHHHHHH-hCCCCceeeecCCCCCCHHHHH
Q 014886 227 --------HPDSSFILDA---------NEG-------------YKPQEAVEVLEKLY-EMGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 227 --------g~~~~L~vDa---------N~~-------------w~~~~A~~~~~~L~-~~~l~~~~iEeP~~~~d~~~~~ 275 (416)
|+++.|++|+ |++ ||.++|+++++.|. ++++ .|||||++++|+++++
T Consensus 236 v~~agy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i--~~iEePl~~~d~~~~~ 313 (444)
T 1w6t_A 236 IEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWK 313 (444)
T ss_dssp HHHTTCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHH
T ss_pred HHHhccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc--EEEECCCChhhHHHHH
Confidence 6789999999 888 89999999999986 4986 6999999999999999
Q ss_pred HhHHhhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHH
Q 014886 276 HVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLA 350 (416)
Q Consensus 276 ~l~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig 350 (416)
+|++ ++ ++||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++
T Consensus 314 ~l~~----~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~ 389 (444)
T 1w6t_A 314 ALTE----RLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDS 389 (444)
T ss_dssp HHHH----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCC
T ss_pred HHHH----hhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHH
Confidence 9985 45 899999998 999999999999999999999999998 999999999999999999997766 89999
Q ss_pred HHHHHHHHccCCCC
Q 014886 351 MGFAGHLSAGLGCF 364 (416)
Q Consensus 351 ~~a~~hlaaa~~~~ 364 (416)
.++++|+++..++.
T Consensus 390 ~~a~lava~~~~~i 403 (444)
T 1w6t_A 390 TIADIAVATNAGQI 403 (444)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHhcCCCcc
Confidence 98888988876654
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=380.73 Aligned_cols=300 Identities=16% Similarity=0.221 Sum_probs=242.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (416)
|||++|+++.+..|..+ +.++|+|+|++| +||||+.+.. .|.++++..+..
T Consensus 4 m~I~~i~~~~v~~~~~~------------p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~ 70 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGN------------PTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVK 70 (432)
T ss_dssp TSCCEEEEEEEECTTSC------------EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHH
T ss_pred CEEEEEEEEEEecCCCC------------cEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHH
Confidence 78999999999877543 358999999999 9999986421 233445555666
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCCc---eeee
Q 014886 110 KASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVSN---TITT 178 (416)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG---g~~~---~v~~ 178 (416)
.+++ +.|.|+|+|+.+++.+|+.|.+.. .+...+.|++||||||||+.||.+|+|||+||| |..+ ++|+
T Consensus 71 ~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~ 150 (432)
T 2ptz_A 71 NVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPC 150 (432)
T ss_dssp HHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeE
Confidence 5654 899999999999999999886641 122235689999999999999999999999999 8632 5666
Q ss_pred eEeec--C-----CCHHHH---------HHHHHHHHHcCCCEEEEec----CC----------------ChhHHHHH-HH
Q 014886 179 DITIP--I-----VSPAEA---------AELASKYRKQGFTTLKLKV----GK----------------NLKEDIEV-LR 221 (416)
Q Consensus 179 ~~~~~--~-----~~~~~~---------~~~~~~~~~~G~~~~KiKv----G~----------------~~~~d~~~-v~ 221 (416)
|.++. . .+++++ .+++.++.++||+++|+|+ |. +.++|+++ ++
T Consensus 151 ~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~ 230 (432)
T 2ptz_A 151 FNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILME 230 (432)
T ss_dssp EEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHH
T ss_pred EEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHH
Confidence 65542 1 123333 6788888999999999865 42 25789996 89
Q ss_pred HHHHhCC--CcEEEEeCCCCC---------------------CHHHHHHHH-HHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 222 AIRAVHP--DSSFILDANEGY---------------------KPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 222 avr~~g~--~~~L~vDaN~~w---------------------~~~~A~~~~-~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
++|++|+ ++.|++|+|++| +..+++++. +.+++|++ .|||||++++|++++++|
T Consensus 231 Air~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i--~~iEdPl~~~D~~g~~~l 308 (432)
T 2ptz_A 231 AIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGI 308 (432)
T ss_dssp HHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcchHHHHHHH
Confidence 9997787 899999999885 445554444 78899986 699999999999999999
Q ss_pred HHhhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC-CchHHHHH
Q 014886 278 SHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMG 352 (416)
Q Consensus 278 ~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~-~es~ig~~ 352 (416)
++ ++ ++||++||. ++++.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++ .||.++..
T Consensus 309 ~~----~~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~ 384 (432)
T 2ptz_A 309 TE----ALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYI 384 (432)
T ss_dssp HH----HTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH
T ss_pred HH----hcCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHH
Confidence 86 45 799999996 799999999999999999999999998 99999999999999999988654 48888888
Q ss_pred HHHHHHccCCCC
Q 014886 353 FAGHLSAGLGCF 364 (416)
Q Consensus 353 a~~hlaaa~~~~ 364 (416)
+.+|+++..+..
T Consensus 385 a~lava~~~~~i 396 (432)
T 2ptz_A 385 ADLVVALGSGQI 396 (432)
T ss_dssp HHHHHHHTCSEE
T ss_pred HHHHHHhCCCCC
Confidence 888888766543
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=362.19 Aligned_cols=299 Identities=21% Similarity=0.259 Sum_probs=235.8
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (416)
|+|++|..+.+- .++| .+.+.|+|+|++|.+|+|++++.. .|.++++..++.
T Consensus 26 m~I~~i~~r~i~--------dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av~ 93 (449)
T 3uj2_A 26 LEIEKVIGREII--------DSRG----NPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAVQ 93 (449)
T ss_dssp TBEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred eEEEEEEEEEEE--------CCCC----CCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHHH
Confidence 899999987752 2222 268999999999999999875421 345565666666
Q ss_pred HHH-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc-eeee--eEe
Q 014886 110 KAS-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITT--DIT 181 (416)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~-~v~~--~~~ 181 (416)
.++ .++|.|+|+|+.+++.+|+.|.+.. .+...+.|++||||||||+.||.+|+|||+||||..+ .+|+ |..
T Consensus 94 ~v~~~iap~LiG~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~lpvp~~n~ 173 (449)
T 3uj2_A 94 NINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGGLNANRLPVPMMNI 173 (449)
T ss_dssp HHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGGCCBCCEECEEE
T ss_pred HHHHHHHHHHccCCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCCCceeeeeEEE
Confidence 665 4789999999999999999997642 1222356899999999999999999999999999754 5554 544
Q ss_pred ec--CC-----CHHH---------HHHHHHHHHHcCCCEEEE--e-------cCC---------ChhHHHHHH-HHHHHh
Q 014886 182 IP--IV-----SPAE---------AAELASKYRKQGFTTLKL--K-------VGK---------NLKEDIEVL-RAIRAV 226 (416)
Q Consensus 182 ~~--~~-----~~~~---------~~~~~~~~~~~G~~~~Ki--K-------vG~---------~~~~d~~~v-~avr~~ 226 (416)
+. .. +.++ ..+++.++.++||+++|+ | +|. +.++++++| ++||++
T Consensus 174 inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~~~~~~e~l~~i~~AIr~a 253 (449)
T 3uj2_A 174 LNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPDLASDEEAIEYILEAVKLA 253 (449)
T ss_dssp EECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSCHHHHHHHHHHHHHHT
T ss_pred ecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCCccCHHHHHHHHHHHHHHh
Confidence 32 11 1121 356777888999999997 4 552 246778887 789987
Q ss_pred ----CCCcEEEEeCCC------------------CCCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhc
Q 014886 227 ----HPDSSFILDANE------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283 (416)
Q Consensus 227 ----g~~~~L~vDaN~------------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~ 283 (416)
|+++.|++|+|+ .|+.++|+++++. |++|++ .|||||++++|++++++|++.+
T Consensus 254 gy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i--~~IEdPl~~dD~eg~~~L~~~~-- 329 (449)
T 3uj2_A 254 GYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPI--VSIEDGLDEEDWEGWQYMTREL-- 329 (449)
T ss_dssp TCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--
T ss_pred ccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCc--eEEECCCCcchHHHHHHHHHHh--
Confidence 468999999984 4689999999986 899986 6999999999999999998621
Q ss_pred cCCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHcc
Q 014886 284 KFGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAG 360 (416)
Q Consensus 284 ~~~iPIa~dEs~~-~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a~~hlaaa 360 (416)
..++||++||++. ++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++++ +-||..+..+.++++..
T Consensus 330 ~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~iadLaVa~~ 409 (449)
T 3uj2_A 330 GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALN 409 (449)
T ss_dssp TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTT
T ss_pred CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHhC
Confidence 2379999999987 5999999999999999999999998 9999999999999999966544 55787776666665553
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=351.75 Aligned_cols=301 Identities=20% Similarity=0.249 Sum_probs=235.8
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTA 107 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~ 107 (416)
|..+|++|..+.+ -+|+| .+.|.|+|+|++|.+|+|.+++. +.|.++++..+
T Consensus 1 ~~~~i~~~~~r~i--------~dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~a 68 (428)
T 3tqp_A 1 MTATITDINAHEI--------LDSRA----NPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQA 68 (428)
T ss_dssp -CCCEEEEEEEEE--------ECTTS----CEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHH
T ss_pred CCceEEEEEEEEE--------EcCCC----CCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHH
Confidence 4457888887765 23333 37899999999999999975531 12444555566
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC-CC---ceeee
Q 014886 108 MVKAS-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VS---NTITT 178 (416)
Q Consensus 108 ~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg-~~---~~v~~ 178 (416)
...++ .++|.|+|+|+.+++.+|+.|.+.. .+...+.|++||||||||+.||.+|+|||+|||| .. .++|+
T Consensus 69 v~~v~~~iap~LiG~d~~~~~~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~~~pvp~ 148 (428)
T 3tqp_A 69 VENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGDGGPFSMPVPM 148 (428)
T ss_dssp HHHHHTHHHHHHTTCCTTCHHHHHHHHHHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTCCCCBCEEE
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEE
Confidence 66665 4799999999999999999997642 1223356899999999999999999999999999 53 36777
Q ss_pred eEeecCC-------CHHH---------HHHHHHHHHHcCCCEEEEe---------cC------CChhHHHHH----HHHH
Q 014886 179 DITIPIV-------SPAE---------AAELASKYRKQGFTTLKLK---------VG------KNLKEDIEV----LRAI 223 (416)
Q Consensus 179 ~~~~~~~-------~~~~---------~~~~~~~~~~~G~~~~KiK---------vG------~~~~~d~~~----v~av 223 (416)
|.++... +.++ ..+++.++.++||+++|+| +| ++++.|.+. +++|
T Consensus 149 ~~~inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~~~~~~e~l~~i~~Ai 228 (428)
T 3tqp_A 149 MNIINGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPDLPNNEAAFELILEAI 228 (428)
T ss_dssp EEEEECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHH
T ss_pred EEEecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhcccccccccCCCCCcCCCcccHHHHHHHHHHHH
Confidence 8765221 1122 3567778889999999998 55 233445555 6899
Q ss_pred HHh----CCCcEEEEeC--------------CCCCCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 224 RAV----HPDSSFILDA--------------NEGYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 224 r~~----g~~~~L~vDa--------------N~~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
|++ |+++.|++|+ |++|+.++|+++++. +++|++ .|||||++++|++++++|++.+ .
T Consensus 229 r~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~eg~~~L~~~~--~ 304 (428)
T 3tqp_A 229 EDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV--ISIEDGLSENDWAGWKLLTERL--E 304 (428)
T ss_dssp HHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHH--T
T ss_pred HHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhccc--ceEeCCCCcccHHHHHHHHHhc--C
Confidence 997 4689999999 589999999999998 899986 6999999999999999998622 2
Q ss_pred CCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHcc
Q 014886 285 FGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAG 360 (416)
Q Consensus 285 ~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a~~hlaaa 360 (416)
.++||++|| +++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++++ +-||..++.+.++++..
T Consensus 305 ~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~iadLaVa~~ 383 (428)
T 3tqp_A 305 NKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATD 383 (428)
T ss_dssp TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTT
T ss_pred CCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHcC
Confidence 347888898 6789999999999999999999999998 9999999999999999966655 44777777666666653
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=354.58 Aligned_cols=296 Identities=17% Similarity=0.222 Sum_probs=236.6
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC---------------CccCcccHHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------------PHVTAEDQQTAMVKA 111 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~---------------~~~~~e~~~~~~~~~ 111 (416)
+|++|..+.+ -+|+| .++|.|+|+|++|.+|++.+++- +.|.++.+..+...+
T Consensus 6 ~i~~i~~r~i--------~dsrG----~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v 73 (417)
T 3qn3_A 6 VIEDVRAYEV--------LDSRG----NPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANV 73 (417)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHH
T ss_pred eeeEEEEEEE--------EcCCC----CceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHH
Confidence 6888887765 23443 37899999999999999875431 123444556666666
Q ss_pred HH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEe--e-
Q 014886 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I- 182 (416)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~--~- 182 (416)
++ ++|.|+|+|+.+++.+|+.|.+.. .+...+.|++||||||||+.||.+|+|||+||||. +..+|+|.. +
T Consensus 74 ~~~iap~LiG~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG~~~~~lPv~~~nvin 153 (417)
T 3qn3_A 74 NETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIIN 153 (417)
T ss_dssp HTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHGGGCCEECEEEEEEEE
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeeeeeeec
Confidence 64 799999999999999999997642 12223568999999999999999999999999997 457888742 2
Q ss_pred -cC-----CCHHHH------HHHHHHHHHcC---CCEEEE---------ecCC---------ChhHHHHHH-HHHHHhC-
Q 014886 183 -PI-----VSPAEA------AELASKYRKQG---FTTLKL---------KVGK---------NLKEDIEVL-RAIRAVH- 227 (416)
Q Consensus 183 -~~-----~~~~~~------~~~~~~~~~~G---~~~~Ki---------KvG~---------~~~~d~~~v-~avr~~g- 227 (416)
+. .+.++. .+.++++++.| |+++|+ |+|. +.++|+++| +++|++|
T Consensus 154 GG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy 233 (417)
T 3qn3_A 154 GGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGY 233 (417)
T ss_dssp CGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTC
T ss_pred CcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 11 112221 23344555566 888887 6662 367899998 8999997
Q ss_pred -CCcEEEEeCCCC--------------CCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--CCeE
Q 014886 228 -PDSSFILDANEG--------------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSV 289 (416)
Q Consensus 228 -~~~~L~vDaN~~--------------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~--~iPI 289 (416)
|++.|++|+|++ |+.++++++++. +++|++ .|||||++++|++++++|++ ++ .+||
T Consensus 234 ~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~e~~~~L~~----~~g~~ipI 307 (417)
T 3qn3_A 234 ENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI--CSIEDGLAENDFEGWIKLTE----KLGNKIQL 307 (417)
T ss_dssp TTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEESSSCTTCHHHHHHHHH----HHTTTSEE
T ss_pred CCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcce--eEEecCCCcccHHHHHHHHH----hhCCCCce
Confidence 899999999986 579999999997 899986 69999999999999999986 44 5999
Q ss_pred EeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHcc
Q 014886 290 AADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAG 360 (416)
Q Consensus 290 a~dEs~~~-~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa 360 (416)
++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||..+..+.++++..
T Consensus 308 ~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~iadlava~~ 381 (417)
T 3qn3_A 308 VGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALN 381 (417)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHTT
T ss_pred ecCCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHhC
Confidence 99999988 999999999999999999999998 999999999999999999987765 777776665555553
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=338.84 Aligned_cols=283 Identities=17% Similarity=0.196 Sum_probs=218.8
Q ss_pred eEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHHHH-HHHHHh--CCCCCCHHHHHHHHHh
Q 014886 75 ENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKASE-ACEVLK--ESPAMALGSVFGVVAG 135 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~~ 135 (416)
+.++|+|+|++| +||||++... .|.++++..++..+++ +.|.|+ |+|+.+++.+|+.|.+
T Consensus 17 ~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~m~~ 95 (436)
T 2al1_A 17 PTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLIS 95 (436)
T ss_dssp EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred cEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 579999999999 9999975321 2334456666666665 899999 9999999999998865
Q ss_pred hC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC---ceeeeeE--ee-cCC------C---------H
Q 014886 136 LL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS---NTITTDI--TI-PIV------S---------P 187 (416)
Q Consensus 136 ~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG---g~~---~~v~~~~--~~-~~~------~---------~ 187 (416)
.. .+...+.|++||||||||+.||.+|+|||+||| |.. +.+|++. .+ +.. + .
T Consensus 96 ~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~inGg~ha~~~~~~qefmi~p~~ 175 (436)
T 2al1_A 96 LDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTG 175 (436)
T ss_dssp HHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEEEECGGGSSSSCCSCEEEEECTT
T ss_pred hcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEeecCccccCCccccccceecCcc
Confidence 31 122235789999999999999999999999999 864 4677642 22 100 0 0
Q ss_pred HHHHHHHHHHHHcCCCEEEE----e-------cC------CChhHHHHHHHHHHH----hCC--CcEEEEeC--------
Q 014886 188 AEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAIRA----VHP--DSSFILDA-------- 236 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~Ki----K-------vG------~~~~~d~~~v~avr~----~g~--~~~L~vDa-------- 236 (416)
.+..+++.++.++||+.+|. | +| ++++.+.++++.+++ +|+ ++.|++|+
T Consensus 176 a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n 255 (436)
T 2al1_A 176 AKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKD 255 (436)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEET
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccC
Confidence 12234555666677887773 2 43 234455666655554 264 79999999
Q ss_pred --------------CCCCCHHHHHHH-HHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCC-CCHHH
Q 014886 237 --------------NEGYKPQEAVEV-LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC-RSLDD 300 (416)
Q Consensus 237 --------------N~~w~~~~A~~~-~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~-~~~~d 300 (416)
|+.|+.++++++ .+.+++|++ .|||||++++|++++++|++ ++.+||++||+. +++++
T Consensus 256 ~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i--~~iEdPl~~dD~~g~~~l~~----~~~ipI~gDE~~vt~~~~ 329 (436)
T 2al1_A 256 GKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPKR 329 (436)
T ss_dssp TEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHHH
T ss_pred CceEEecccccccccccCCHHHHHHHHHHHHHhCCc--EEEECCCCCcCHHHHHHHHh----cCCCeEEECCcccCCHHH
Confidence 455688999866 555789986 69999999999999999985 688999999995 68999
Q ss_pred HHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHccCCCC
Q 014886 301 VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 301 ~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a~~hlaaa~~~~ 364 (416)
++++++.+++|++|+|++++| ++++++++++|+++|+.+++++ +.||.++..+.+|+++..+..
T Consensus 330 ~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~~~~~i 395 (436)
T 2al1_A 330 IATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQI 395 (436)
T ss_dssp HHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTTCSEE
T ss_pred HHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHhcCCcC
Confidence 999999999999999999998 9999999999999999988855 458999888888888876644
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=334.48 Aligned_cols=298 Identities=17% Similarity=0.203 Sum_probs=225.9
Q ss_pred EeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHH
Q 014886 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (416)
Q Consensus 48 I~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (416)
|++|..+.+ ..|++. +.++|+|+|++|+ |||++++.. .|.++++..++..+
T Consensus 2 I~~v~~r~i--------~dsrg~----~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v 68 (439)
T 2akz_A 2 IEKIWAREI--------LDSRGN----PTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHI 68 (439)
T ss_dssp CCEEEEEEE--------ECTTSC----EEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred eeEEEEEEE--------EcCCCC----ceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHH
Confidence 667776654 223332 5799999999999 998765411 13344556666666
Q ss_pred HH-HHHHHh--CCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CC-CceeeeeE
Q 014886 112 SE-ACEVLK--ESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GV-SNTITTDI 180 (416)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG---g~-~~~v~~~~ 180 (416)
++ +.|.|+ |+|+.+++.+|+.|.+.. .+...++|++||||||||+.||.+|+|||+||| |. ++.+|++.
T Consensus 69 ~~~iap~Li~~G~d~~~~~~i~~~m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~ 148 (439)
T 2akz_A 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPA 148 (439)
T ss_dssp HHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEE
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEE
Confidence 65 899999 999999999999886531 122235789999999999999999999999999 86 44677653
Q ss_pred e--e-cCC------C---------HHHHHHHHHHHHHcCCCEEEE----e-------cC------CChhHHHHHHHHHHH
Q 014886 181 T--I-PIV------S---------PAEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAIRA 225 (416)
Q Consensus 181 ~--~-~~~------~---------~~~~~~~~~~~~~~G~~~~Ki----K-------vG------~~~~~d~~~v~avr~ 225 (416)
. + +.. + ..+..+++.++.++||+.+|. | +| ++++.+.+.++.|++
T Consensus 149 ~~~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ 228 (439)
T 2akz_A 149 FNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKE 228 (439)
T ss_dssp EEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHH
T ss_pred EEEecCccccccccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHH
Confidence 2 2 100 0 011234555666677887773 3 33 123456666666554
Q ss_pred ----hCC--CcEEEEeC---------------------CCCCCHHHHHHH-HHHHHhCCCCceeeecCCCCCCHHHHHHh
Q 014886 226 ----VHP--DSSFILDA---------------------NEGYKPQEAVEV-LEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (416)
Q Consensus 226 ----~g~--~~~L~vDa---------------------N~~w~~~~A~~~-~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (416)
+|+ ++.|++|+ |+.|+.++++++ .+.+++|++ .|||||++++|++++++|
T Consensus 229 ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i--~~IEdPl~~dD~~g~~~L 306 (439)
T 2akz_A 229 AIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKF 306 (439)
T ss_dssp HHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHH
Confidence 254 79999999 445788998776 555788986 699999999999999999
Q ss_pred HHhhhccCCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc-cCCchHHHHHHH
Q 014886 278 SHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFA 354 (416)
Q Consensus 278 ~~~~r~~~~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~-~~~es~ig~~a~ 354 (416)
++ ++.+||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+.++++ .+.||.++..+.
T Consensus 307 ~~----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~ 382 (439)
T 2akz_A 307 TA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIAD 382 (439)
T ss_dssp HH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHH
T ss_pred Hh----CCCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHH
Confidence 85 68899999998 579999999999999999999999998 999999999999999998874 456899998888
Q ss_pred HHHHccCCCC
Q 014886 355 GHLSAGLGCF 364 (416)
Q Consensus 355 ~hlaaa~~~~ 364 (416)
+|+++..+..
T Consensus 383 lava~~~~~i 392 (439)
T 2akz_A 383 LVVGLCTGQI 392 (439)
T ss_dssp HHHHHTCSEE
T ss_pred HHHHhcCCcc
Confidence 8888876543
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-24 Score=212.74 Aligned_cols=293 Identities=15% Similarity=0.194 Sum_probs=206.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMV 109 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~ 109 (416)
|.|++|..+.+ -.|+|. ++|-|+|+|++|.. -+-++.- ..|.+-.+..++.
T Consensus 6 m~I~~i~ar~i--------ldsrGn----ptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~ 72 (441)
T 3qtp_A 6 MSIQKVHAREI--------LDSRGN----PTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVE 72 (441)
T ss_dssp TBCCEEEEEEE--------ECTTSC----EEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred cEEEEEEEEEE--------ECCCCC----EEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHHH
Confidence 55888887765 234443 67889999998875 3333221 0122333455666
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC-c--eeee
Q 014886 110 KASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS-N--TITT 178 (416)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG---g~~-~--~v~~ 178 (416)
.++. ++|.|+|.++.+...+.+.|...- .+...+.|+-||.+|++.+.|+..|+|||++|| |.. . ++|.
T Consensus 73 ~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~ 152 (441)
T 3qtp_A 73 NVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPC 152 (441)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEE
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccce
Confidence 6665 799999999999998888876531 122235689999999999999999999999997 432 2 3443
Q ss_pred eEeec------------------C--CCHHHH-------HHHHHHHHHc--CCCEEEEecC------C---ChhHHHHHH
Q 014886 179 DITIP------------------I--VSPAEA-------AELASKYRKQ--GFTTLKLKVG------K---NLKEDIEVL 220 (416)
Q Consensus 179 ~~~~~------------------~--~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~---~~~~d~~~v 220 (416)
...+. . .+..+. -...++.++. |.. -..+| + +.++-++.|
T Consensus 153 ~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~--~t~vgdEGgfap~~~~~~eaL~ll 230 (441)
T 3qtp_A 153 FNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQD--ATNVGDEGGFAPNVSGAREALDLL 230 (441)
T ss_dssp EEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCSSHHHHHHHH
T ss_pred EeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc--cccccCCcccCCCCCCHHHHHHHH
Confidence 32221 1 122221 1222233221 321 11233 2 235556654
Q ss_pred H-HHHHhC--CCcEEEEeCC---------C-----------------CCCHHHHHHHHHH-HHhCCCCceeeecCCCCCC
Q 014886 221 R-AIRAVH--PDSSFILDAN---------E-----------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 221 ~-avr~~g--~~~~L~vDaN---------~-----------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d 270 (416)
. ++.++| .++.|.+|+. + .+|.++++++.+. +++|++ .|||||++.+|
T Consensus 231 ~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI--~~IEDPl~~dD 308 (441)
T 3qtp_A 231 VEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPI--ASIEDPFAEDD 308 (441)
T ss_dssp HHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCE--EEEESCSCTTC
T ss_pred HHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcce--eeecCCCChHH
Confidence 4 555665 5789999873 1 2578899988777 688985 69999999999
Q ss_pred HHHHHHhHHhhhccCC-CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCc
Q 014886 271 WEGLGHVSHIAKDKFG-VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVE 346 (416)
Q Consensus 271 ~~~~~~l~~~~r~~~~-iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~e 346 (416)
++++++|++ +++ +||++||+ ++++++++++++.+++|++++|++++| ++++++++.+|+++|+.+|+++ +.|
T Consensus 309 ~eg~a~Lt~----~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsgE 384 (441)
T 3qtp_A 309 WAAWNKFTV----EHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSGE 384 (441)
T ss_dssp HHHHHHHHH----HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSSC
T ss_pred HHHHHHHHH----hcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 999999986 564 99999998 678999999999999999999999998 9999999999999999999866 458
Q ss_pred hHHHHHHHHHHHc
Q 014886 347 TRLAMGFAGHLSA 359 (416)
Q Consensus 347 s~ig~~a~~hlaa 359 (416)
|..+..+.++++.
T Consensus 385 TeDt~iAdLAVal 397 (441)
T 3qtp_A 385 TEDTFIADLVVGL 397 (441)
T ss_dssp CSCCHHHHHHHHT
T ss_pred ccHhHHHHHHHHh
Confidence 8777666555554
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=200.38 Aligned_cols=292 Identities=18% Similarity=0.229 Sum_probs=202.8
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (416)
+|++|..+.+ -.|+|. ++|-|+|+|++|.. -+-++.- ..|.+-.+..++..
T Consensus 3 ~I~~i~arei--------ldSrGn----pTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~ 69 (452)
T 3otr_A 3 VIKDIVAREI--------LDSRGN----PTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEI 69 (452)
T ss_dssp CCCEEEEEEE--------ECTTSC----EEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHH
T ss_pred cceEEEEEEE--------EcCCCC----EEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHH
Confidence 5777776664 234443 67889999988864 3332210 01223334556666
Q ss_pred HHH-HHHHHhCCCCCCHHHHHHHHH-hhC---------CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC---
Q 014886 111 ASE-ACEVLKESPAMALGSVFGVVA-GLL---------PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS--- 173 (416)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~-~~~---------~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG---g~~--- 173 (416)
++. ++|.|+|.++.+...+.+.|. ..- .+...+.|+-||.+|+.-+.|...|+|||++|| |..
T Consensus 70 vn~~Iap~Lig~d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~ 149 (452)
T 3otr_A 70 VRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDK 149 (452)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHcCCChHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcc
Confidence 665 799999999999999888887 321 222235689999999999999999999999998 433
Q ss_pred ceeee--eEeec------------------C--CCHHHH-------HHHHHHHHHc--CCCEEEEecC------C---Ch
Q 014886 174 NTITT--DITIP------------------I--VSPAEA-------AELASKYRKQ--GFTTLKLKVG------K---NL 213 (416)
Q Consensus 174 ~~v~~--~~~~~------------------~--~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~---~~ 213 (416)
..+|+ ...+. . .+..+. -...++.++. |.. -..+| + +.
T Consensus 150 ~~lPvP~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~--~t~vgDEGgfap~~~~~ 227 (452)
T 3otr_A 150 MVMPVPFFNVINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLD--ATNVGDEGGFAPNVATA 227 (452)
T ss_dssp EEECEECEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCCSH
T ss_pred eecccceEEEecCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCc--ccccccccccCCCCCCH
Confidence 23333 22111 1 122221 1222333322 421 11233 2 23
Q ss_pred hHHHHHHH-HHHHhC--CCcEEEEeCCC------------------------CCCHHHHHHHHHH-HHhCCCCceeeecC
Q 014886 214 KEDIEVLR-AIRAVH--PDSSFILDANE------------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQP 265 (416)
Q Consensus 214 ~~d~~~v~-avr~~g--~~~~L~vDaN~------------------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP 265 (416)
++-++.|. ++.++| .++.|.+|+-. .+|.+|++++.+. +++|++ .|||||
T Consensus 228 ~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypI--v~IEDP 305 (452)
T 3otr_A 228 EEALNLLVEAIKAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI--ISVEDP 305 (452)
T ss_dssp HHHHHHHHHHHHHHTCTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCE--EEEECC
T ss_pred HHHHHHHHHHHHHcCCCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCc--eEEecC
Confidence 55566544 666665 57889888621 2578999999877 688985 699999
Q ss_pred CCCCCHHHHHHhHHhhhccCC--CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE
Q 014886 266 VHRDDWEGLGHVSHIAKDKFG--VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 266 ~~~~d~~~~~~l~~~~r~~~~--iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~ 341 (416)
++.+|++++++|++ +++ +||++||+ ++++.++++.++.+++|++++|++++| ++++++++.+|+++|+.+|+
T Consensus 306 l~~dD~eg~a~Lt~----~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vmv 381 (452)
T 3otr_A 306 FDQDDFASFSAFTK----DVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp SCTTCHHHHHHHHH----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CChhhHHHHHHHHH----hhCCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEEE
Confidence 99999999999986 344 99999997 678999999999999999999999998 99999999999999999999
Q ss_pred ccC-CchHHHHHHHHHHHccC
Q 014886 342 GGM-VETRLAMGFAGHLSAGL 361 (416)
Q Consensus 342 ~~~-~es~ig~~a~~hlaaa~ 361 (416)
++. -||.-...+ |||.++
T Consensus 382 shrSGETeD~~iA--dLaVgl 400 (452)
T 3otr_A 382 SHRSGETEDSFIA--DLVVGL 400 (452)
T ss_dssp ECCSSCCSCCHHH--HHHHHT
T ss_pred eCCCCCCchhHHH--HHHHHc
Confidence 774 466555444 555544
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.7e-06 Score=82.71 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHh-CCCc--EEEEeCC---
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDS--SFILDAN--- 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~-g~~~--~L~vDaN--- 237 (416)
+..+.++.+.+.||..+.|+.+. +++. -++.|++||++ +++. .+++.++
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 34566677788999999999862 1222 36789999998 7775 4555655
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCceeeecCC------------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 -EGYKPQEAVEVLEKLYEMGVTPVLFEQPV------------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iEeP~------------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
++|+.+++.++++.|++.++. ||+-.. +..+++..++++ +.+++||.+...+.+.+++.++
T Consensus 233 ~~g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~e~a~~~ 306 (349)
T 3hgj_A 233 EGGWSLEDTLAFARRLKELGVD--LLDCSSGGVVLRVRIPLAPGFQVPFADAVR----KRVGLRTGAVGLITTPEQAETL 306 (349)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCC--EEEEECCCSCSSSCCCCCTTTTHHHHHHHH----HHHCCEEEECSSCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEecCCcCcccccCCCccccHHHHHHHH----HHcCceEEEECCCCCHHHHHHH
Confidence 489999999999999999975 888653 112444455554 3678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.|.+|.|.+
T Consensus 307 l~~G~aD~V~i 317 (349)
T 3hgj_A 307 LQAGSADLVLL 317 (349)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCceEEEe
Confidence 99999999876
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=84.68 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHh-CCCcEEE--EeC---
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDSSFI--LDA--- 236 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~-g~~~~L~--vDa--- 236 (416)
+++.+.++.+.+.||..++|+.+. +++. -.+.+++||++ ++++.+. +.+
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 345666777888999999998752 1222 47789999997 8886653 333
Q ss_pred -CCCCCHHHHHHHHHHHHhCCCCceeee-------cCCCC--------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH
Q 014886 237 -NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (416)
Q Consensus 237 -N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~--------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d 300 (416)
+++|+.+++.++++.|++.++. ||+ .+.+. ..++..+++ ++..++||++...+.++++
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~iPvi~~Ggi~~~~~ 294 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKL----KGHVSLPLVTTNRINDPQV 294 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHH----TTSCSSCEEECSSCCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCC--EEEcCCCccccccccccccCCcchHHHHHHHH----HHhcCceEEEeCCCCCHHH
Confidence 4689999999999999999875 884 43331 123334444 3578999999999999999
Q ss_pred HHHHHHcCCCCEEEe
Q 014886 301 VKKIVKGNLADVINI 315 (416)
Q Consensus 301 ~~~~i~~~a~d~v~~ 315 (416)
+.++++.|.+|.+.+
T Consensus 295 a~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 295 ADDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCCEEEe
Confidence 999999999999975
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-05 Score=76.28 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHhCCCcE--EEEeC----C
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAVHPDSS--FILDA----N 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~g~~~~--L~vDa----N 237 (416)
+..+.++.+.+.||..++|+.+. ++ +.-.+.|++||++. +.. +++.. +
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~ 223 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC
Confidence 44666777788999999999862 12 22377899999975 433 34433 4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeee--------c--CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFE--------Q--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE--------e--P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~ 306 (416)
++|+.+++.++++.|++.++. ||+ + |..+ .+++..+++++ .+++||.+...+.+.+++.++++
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~s~~~a~~~l~ 297 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIRE----QADMATGAVGMITDGSMAEEILQ 297 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCccccCCCCCCccchHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHH
Confidence 589999999999999999975 777 2 3322 24555566653 67899999999999999999999
Q ss_pred cCCCCEEEe
Q 014886 307 GNLADVINI 315 (416)
Q Consensus 307 ~~a~d~v~~ 315 (416)
.|.+|.|.+
T Consensus 298 ~G~aD~V~i 306 (338)
T 1z41_A 298 NGRADLIFI 306 (338)
T ss_dssp TTSCSEEEE
T ss_pred cCCceEEee
Confidence 998999976
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=76.28 Aligned_cols=121 Identities=13% Similarity=0.215 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN--- 237 (416)
++..+.|+.+++.||..|+|+.+. +++ --.+.|++||++ +++ +.+++-.+
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 455677777888999999998752 122 246678999997 555 33333333
Q ss_pred -----CCCCHHHHHHHHHHHHhCCCCceeeecCCC------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH
Q 014886 238 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~ 306 (416)
+.++.+++.++++.|++.++. ||+-... ...++..++++ +.+++||++...+ +.+++.++++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~v~----~~~~iPvi~~Ggi-t~~~a~~~l~ 313 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVR----ERFHGVIIGAGAY-TAEKAEDLIG 313 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC--EEEEecCcccCCCcccHHHHHHHH----HHCCCCEEEECCc-CHHHHHHHHH
Confidence 356888999999999999974 8887652 23444455555 4678999999999 8999999999
Q ss_pred cCCCCEEEe
Q 014886 307 GNLADVINI 315 (416)
Q Consensus 307 ~~a~d~v~~ 315 (416)
.|.+|+|.+
T Consensus 314 ~g~aD~V~~ 322 (364)
T 1vyr_A 314 KGLIDAVAF 322 (364)
T ss_dssp TTSCSEEEE
T ss_pred CCCccEEEE
Confidence 999999866
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=78.76 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC----
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN---- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~~L~vDaN---- 237 (416)
++..+.++.+++.||..|+|+.+. +++ .-.+.|++||++ +++ .+.++.+
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~ 245 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAH 245 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEeccccc
Confidence 456777788889999999999852 122 246678999997 665 5555544
Q ss_pred -----CCCCHHHHHHHHHHHHhCCCCceeeecCCCC--------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
..++.+++.++++.|+++++. |||-.... .+++..++++ +..++||++...+ +.+++.++
T Consensus 246 ~~g~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~vr----~~~~iPvi~~G~i-~~~~a~~~ 318 (376)
T 1icp_A 246 YNEAGDTNPTALGLYMVESLNKYDLA--YCHVVEPRMKTAWEKIECTESLVPMR----KAYKGTFIVAGGY-DREDGNRA 318 (376)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCS--EEEEECCSCCC------CCCCSHHHH----HHCCSCEEEESSC-CHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcccCCCCccccHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHH
Confidence 345788899999999999974 89875431 1222233443 4678999999999 89999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.|.+|+|.+
T Consensus 319 l~~g~aD~V~~ 329 (376)
T 1icp_A 319 LIEDRADLVAY 329 (376)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCCcEEee
Confidence 99999999876
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=77.83 Aligned_cols=119 Identities=8% Similarity=0.103 Sum_probs=89.3
Q ss_pred HHHHHHHHHH-HcCCCEEEEecCC-----------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC-
Q 014886 189 EAAELASKYR-KQGFTTLKLKVGK-----------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN- 237 (416)
Q Consensus 189 ~~~~~~~~~~-~~G~~~~KiKvG~-----------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN- 237 (416)
+..+.++.++ +.||..|+|+.+. +++ .-.+.|++||++ +++ +.+++.++
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 3456667778 8999999998752 222 235678899997 655 44555443
Q ss_pred ------CCCCHHHHHHHHHHHHhCCCCceeeecCCCC-----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH
Q 014886 238 ------EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 238 ------~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~ 306 (416)
++|+.+++.++++.|+++++. |||.+... ...+ .++++ +.+++||++.+.+ +.+++.++++
T Consensus 255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~~-~~~ir----~~~~iPvi~~G~i-t~~~a~~~l~ 326 (379)
T 3aty_A 255 GVHGMIDSNPEALTKHLCKKIEPLSLA--YLHYLRGDMVNQQIGDV-VAWVR----GSYSGVKISNLRY-DFEEADQQIR 326 (379)
T ss_dssp CGGGCCCSCHHHHHHHHHHHHGGGCCS--EEEEECSCTTSCCCCCH-HHHHH----TTCCSCEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCC--EEEEcCCCcCCCCccHH-HHHHH----HHCCCcEEEECCC-CHHHHHHHHH
Confidence 578999999999999999974 99987631 1113 45554 4788999999999 9999999999
Q ss_pred cCCCCEEEe
Q 014886 307 GNLADVINI 315 (416)
Q Consensus 307 ~~a~d~v~~ 315 (416)
.|.+|+|.+
T Consensus 327 ~g~aD~V~i 335 (379)
T 3aty_A 327 EGKVDAVAF 335 (379)
T ss_dssp TTSCSEEEE
T ss_pred cCCCeEEEe
Confidence 999999976
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=76.38 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHh-CCCc--EEEEeCCC---
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDS--SFILDANE--- 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~-g~~~--~L~vDaN~--- 238 (416)
..+.++.+.+.||..+.|+.+. +++. -++.|++||++ ++++ .+++.++.
T Consensus 160 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~ 239 (363)
T 3l5l_A 160 FVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG 239 (363)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC
Confidence 3556677788999999999751 2222 36678999997 6674 34444432
Q ss_pred -C-CCHHHHHHHHHHHHhCCCCceeeecCC-----------CC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 239 -G-YKPQEAVEVLEKLYEMGVTPVLFEQPV-----------HR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 239 -~-w~~~~A~~~~~~L~~~~l~~~~iEeP~-----------~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
+ |+.+++.++++.|++.++. ||+-.. .+ .+++..++++ +..++||.+...+.+.+++.++
T Consensus 240 ~G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~GgI~s~e~a~~~ 313 (363)
T 3l5l_A 240 RDEQTLEESIELARRFKAGGLD--LLSVSVGFTIPDTNIPWGPAFMGPIAERVR----REAKLPVTSAWGFGTPQLAEAA 313 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC--EEEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCCEEECSSTTSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEecCccccccccCCCcchhHHHHHHHH----HHcCCcEEEeCCCCCHHHHHHH
Confidence 3 8899999999999999975 887432 11 2344445554 3678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.|.+|.|.+
T Consensus 314 l~~G~aD~V~i 324 (363)
T 3l5l_A 314 LQANQLDLVSV 324 (363)
T ss_dssp HHTTSCSEEEC
T ss_pred HHCCCccEEEe
Confidence 99998999865
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=7.6e-05 Score=73.00 Aligned_cols=119 Identities=14% Similarity=0.227 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCEEEEecC---------------------CChh----HHHHHHHHHHHh-CCCcEE--EEeCC----
Q 014886 190 AAELASKYRKQGFTTLKLKVG---------------------KNLK----EDIEVLRAIRAV-HPDSSF--ILDAN---- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG---------------------~~~~----~d~~~v~avr~~-g~~~~L--~vDaN---- 237 (416)
..+.++.+.+.||..|.|..+ .+++ --.+.|++||++ ++++.+ ++-++
T Consensus 145 f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~ 224 (343)
T 3kru_A 145 FGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME 224 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST
T ss_pred HHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc
Confidence 455667778899999999943 1222 236789999998 677544 44443
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecC----------CCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQP----------VHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP----------~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~ 306 (416)
++|+.+++.++++.|++. +. ||+-. ..+ .+++..++++ +..++||.+...+.+++++.++++
T Consensus 225 ~g~~~~~~~~~a~~l~~~-vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~e~Ae~~l~ 297 (343)
T 3kru_A 225 GGINIDMMVEYINMIKDK-VD--LIDVSSGGLLNVDINLYPGYQVKYAETIK----KRCNIKTSAVGLITTQELAEEILS 297 (343)
T ss_dssp TSCCHHHHHHHHHHHTTT-CS--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCEEEEESSCCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhcc-cc--EEeccCCceEeeeecccCceeehHHHHHH----HhcCcccceeeeeeHHHHHHHHHh
Confidence 478999999999999998 75 88763 111 2344445554 367899999999999999999999
Q ss_pred cCCCCEEEe
Q 014886 307 GNLADVINI 315 (416)
Q Consensus 307 ~~a~d~v~~ 315 (416)
.|.+|.|.+
T Consensus 298 ~G~aD~V~i 306 (343)
T 3kru_A 298 NERADLVAL 306 (343)
T ss_dssp TTSCSEEEE
T ss_pred chhhHHHHH
Confidence 999999865
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00054 Score=67.56 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN--- 237 (416)
++..+.++.+.+.||..|+|+.+. +++ --.+.|++||++ +++ +.+++-.+
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 345666677788999999998742 122 345678999997 655 33333332
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCceeeecCCC------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
++++.+++.++++.|++.++. ||+-... ...++..++++ +.+++||.+...+ +.+++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~i~----~~~~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIV--YLHIAEVDWDDAPDTPVSFKRALR----EAYQGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCCCccHHHHHHHH----HHCCCcEEEeCCC-CHHHHHHHHHC
Confidence 457889999999999999974 7875432 11234344554 4678999999888 89999999999
Q ss_pred CCCCEEEe
Q 014886 308 NLADVINI 315 (416)
Q Consensus 308 ~a~d~v~~ 315 (416)
|.+|.|.+
T Consensus 314 g~aD~V~i 321 (365)
T 2gou_A 314 GLADMIGF 321 (365)
T ss_dssp TSCSEEEC
T ss_pred CCcceehh
Confidence 98999865
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00044 Score=68.51 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN--- 237 (416)
++..+.|+.+++.||..|+|+.+. +++ --++.|++||++ +++ +.+++-.+
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 455667777788999999998752 122 246678999997 654 34444332
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCceeeecCCC------C-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH
Q 014886 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------R-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~ 306 (416)
.+|+.+++.++++.|++.++. ||+-... . .+++..++++ +..++||.+...+ +.+++.++++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLA--YLHFNEPDWIGGDITYPEGFREQMR----QRFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCC------CCCTTHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCcccCCCCcchHHHHHHHH----HHCCCCEEEECCC-CHHHHHHHHH
Confidence 467899999999999999874 7775321 1 1233344554 4678999998888 6999999999
Q ss_pred cCCCCEEEe
Q 014886 307 GNLADVINI 315 (416)
Q Consensus 307 ~~a~d~v~~ 315 (416)
.|.+|.|.+
T Consensus 319 ~g~aD~V~i 327 (377)
T 2r14_A 319 DNTADAVAF 327 (377)
T ss_dssp TTSCSEEEE
T ss_pred CCCceEEee
Confidence 999999866
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00063 Score=66.94 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCCC----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDANE---- 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN~---- 238 (416)
..+.++.+++.||..|.|+.+. +++ --++.|++||++ +++ +.+++-++.
T Consensus 155 f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g 234 (362)
T 4ab4_A 155 YRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHD 234 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccc
Confidence 4556677788999999999862 122 236678899997 655 344444432
Q ss_pred ---CCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 239 ---GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 239 ---~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++.+++.++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.|.+|.|.+
T Consensus 235 ~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 235 MGDADRAETFTYVARELGKRGIA--FICSREREADDSIGPLIK----EAFGGPYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHhCCC--EEEECCCCCCHHHHHHHH----HHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 12367899999999999975 888654331111234444 3567899888778 9999999999999999865
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0006 Score=67.05 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCCC---
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDANE--- 238 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN~--- 238 (416)
+..+.++.+.+.||..|+|+.+. +++ --++.|++||++ +++ +.+++-++.
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~ 241 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAH 241 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccC
Confidence 44666777888999999999862 122 236789999997 665 444444432
Q ss_pred ----CCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 239 ----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 239 ----~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
.++.+++.++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.|.+|.|.
T Consensus 242 g~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~ 314 (361)
T 3gka_A 242 TMGDSDPAATFGHVARELGRRRIA--FLFARESFGGDAIGQQLK----AAFGGPFIVNENF-TLDSAQAALDAGQADAVA 314 (361)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCCSTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 23477899999999999975 888655432112234443 3567899888888 999999999999999986
Q ss_pred e
Q 014886 315 I 315 (416)
Q Consensus 315 ~ 315 (416)
+
T Consensus 315 i 315 (361)
T 3gka_A 315 W 315 (361)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00099 Score=66.49 Aligned_cols=120 Identities=11% Similarity=0.148 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHh-CCCcEEEEeCC----
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDSSFILDAN---- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~-g~~~~L~vDaN---- 237 (416)
++..+.|+.+++.||..|.|+.+. +++. -.+.|++||++ +++ .+.+.-+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~-~V~vRls~~~~ 249 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD-RVGVRVSPAID 249 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCC-cEEEEeccccc
Confidence 445667778888999999999851 2222 46678899997 654 3444422
Q ss_pred -----CCCCHHHHHHHHHHHHhCC------CCceeeec--------CCCCC--------CHHHHHHhHHhhhccCCCeEE
Q 014886 238 -----EGYKPQEAVEVLEKLYEMG------VTPVLFEQ--------PVHRD--------DWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~------l~~~~iEe--------P~~~~--------d~~~~~~l~~~~r~~~~iPIa 290 (416)
.+++.+++.++++.|++.+ +. ||+- +..+. +++..+++ ++..++||.
T Consensus 250 ~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----k~~~~iPvi 323 (402)
T 2hsa_B 250 HLDAMDSNPLSLGLAVVERLNKIQLHSGSKLA--YLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTL----RNAYQGTFI 323 (402)
T ss_dssp STTCCCSCHHHHHHHHHHHHHHHHHHHTSCCS--EEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHH----HHHCSSCEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCccCCceE--EEEEecCccccccCCccccccCCcchHHHHHHH----HHHCCCCEE
Confidence 3467889999999999988 64 5553 11110 12222333 457889999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 291 ADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 291 ~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+...+ +.+++.++++.|.+|.|.+
T Consensus 324 ~~G~i-~~~~a~~~l~~g~aD~V~i 347 (402)
T 2hsa_B 324 CSGGY-TRELGIEAVAQGDADLVSY 347 (402)
T ss_dssp EESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred EeCCC-CHHHHHHHHHCCCCceeee
Confidence 98888 9999999999999999976
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0022 Score=62.53 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHhC-CCcEEEEeCC----CC
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVH-PDSSFILDAN----EG 239 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~g-~~~~L~vDaN----~~ 239 (416)
..+.++.+.+.||..+.|+.+. +++. -++.|++||++. --+.+++-.+ ++
T Consensus 146 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g 225 (340)
T 3gr7_A 146 FQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDG 225 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTS
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCC
Confidence 4556677788999999999761 2222 257788999874 2245555554 47
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecC--------C--CC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQP--------V--HR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP--------~--~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
|+.++..++++.|++.++. ||+-- . .+ .+++-.++++ +..++||...-.+.+.+++.++++.|
T Consensus 226 ~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~iPVi~~GgI~s~e~a~~~L~~G 299 (340)
T 3gr7_A 226 LTAKDYVPYAKRMKEQGVD--LVDVSSGAIVPARMNVYPGYQVPFAELIR----READIPTGAVGLITSGWQAEEILQNG 299 (340)
T ss_dssp CCGGGHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHTTCCEEEESSCCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEEecCCccCCCCCCCccccHHHHHHHH----HHcCCcEEeeCCCCCHHHHHHHHHCC
Confidence 8999999999999999875 66631 1 11 2344444554 46789999999999999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.|.+
T Consensus 300 ~aD~V~i 306 (340)
T 3gr7_A 300 RADLVFL 306 (340)
T ss_dssp SCSEEEE
T ss_pred CeeEEEe
Confidence 8999876
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.018 Score=55.41 Aligned_cols=130 Identities=20% Similarity=0.302 Sum_probs=94.3
Q ss_pred eeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014886 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (416)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~ 241 (416)
+...+...+++++.+.++.+.+. |..+-|.+|. +++.-.+.|+++|+..+ ..+.+..+.+|+
T Consensus 61 ~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~G~~ 138 (318)
T 1vhn_A 61 VAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRLGWE 138 (318)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEESCSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecCCCC
Confidence 33444455788888888888888 9999999872 34455667888888743 677888777898
Q ss_pred HHHHHHHHHHHHhCCCCceee-------ecCC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 242 PQEAVEVLEKLYEMGVTPVLF-------EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~~i-------EeP~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
.++..++++.+++.++. +| ++-. .+.+++..++++ + ++||.++-.+.+.+|+.++++...+|.|
T Consensus 139 ~~~~~~~a~~l~~~G~d--~i~v~g~~~~~~~~~~~~~~~i~~i~-----~-~ipVi~~GgI~s~~da~~~l~~~gad~V 210 (318)
T 1vhn_A 139 KNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVLE-----K-RIPTFVSGDIFTPEDAKRALEESGCDGL 210 (318)
T ss_dssp SCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGSC-----C-SSCEEEESSCCSHHHHHHHHHHHCCSEE
T ss_pred hHHHHHHHHHHHHhCCC--EEEEcCCCccccCCCCcCHHHHHHHH-----c-CCeEEEECCcCCHHHHHHHHHcCCCCEE
Confidence 76666899999999875 44 2211 123454444443 3 8999999999999999999985457998
Q ss_pred EeCC
Q 014886 314 NIKL 317 (416)
Q Consensus 314 ~~k~ 317 (416)
++=-
T Consensus 211 ~iGR 214 (318)
T 1vhn_A 211 LVAR 214 (318)
T ss_dssp EESG
T ss_pred EECH
Confidence 8743
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.031 Score=53.39 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=92.0
Q ss_pred eeEeecCCCHHHHHHHHHHHHHcCCC-EEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 014886 178 TDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~-~~KiKvG-----------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A 245 (416)
+..++...+++++.+.++.+.+.||. .+-+.++ .+++.-.+.+++||+.. ++.+.+--+..|+.++.
T Consensus 96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~~ 174 (311)
T 1jub_A 96 IFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHF 174 (311)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHH
Confidence 33455556888999999999999999 8999875 14444456777787753 45566555555888888
Q ss_pred HHHHHHHHhCCCCceee------------e----cCCCC---------------CCHHHHHHhHHhhhccC--CCeEEeC
Q 014886 246 VEVLEKLYEMGVTPVLF------------E----QPVHR---------------DDWEGLGHVSHIAKDKF--GVSVAAD 292 (416)
Q Consensus 246 ~~~~~~L~~~~l~~~~i------------E----eP~~~---------------~d~~~~~~l~~~~r~~~--~iPIa~d 292 (416)
.++++.+++.++. +| + .|... ..++..+++ ++.. ++||...
T Consensus 175 ~~~a~~~~~~G~d--~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v----~~~~~~~ipvi~~ 248 (311)
T 1jub_A 175 DIMAEILNQFPLT--YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF----YTRLKPEIQIIGT 248 (311)
T ss_dssp HHHHHHHTTSCCC--EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH----HTTSCTTSEEEEE
T ss_pred HHHHHHHHHcCCc--EEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHH----HHhcCCCCCEEEE
Confidence 8999999998874 43 1 11110 012223333 3466 8999999
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEe
Q 014886 293 ESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 293 Es~~~~~d~~~~i~~~a~d~v~~ 315 (416)
=-+.+.+|+.+++..| +|.+++
T Consensus 249 GGI~~~~da~~~l~~G-Ad~V~v 270 (311)
T 1jub_A 249 GGIETGQDAFEHLLCG-ATMLQI 270 (311)
T ss_dssp SSCCSHHHHHHHHHHT-CSEEEE
T ss_pred CCCCCHHHHHHHHHcC-CCEEEE
Confidence 9999999999999988 799987
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.1 Score=50.86 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=92.0
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 237 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~-~~~L~vDaN 237 (416)
++...+...+++++.+.++.+.+.||..|-|.+|. +++.-.+.|+++++.. | .+++++...
T Consensus 59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~ 138 (350)
T 3b0p_A 59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE 138 (350)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence 34444555678888888888888999999999862 2334455678888763 2 123344433
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecC-------------CCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQP-------------VHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKK 303 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP-------------~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~ 303 (416)
...+.++..++++.+++.|+...-+..- .++.+++..+++++ .. ++||.+.=.+.+.+++.+
T Consensus 139 ~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~----~~~~iPVianGgI~s~eda~~ 214 (350)
T 3b0p_A 139 GKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKG----DFPQLTFVTNGGIRSLEEALF 214 (350)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHH----HCTTSEEEEESSCCSHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHH----hCCCCeEEEECCcCCHHHHHH
Confidence 3445678899999999988752222211 12235666666654 55 899999989999999999
Q ss_pred HHHcCCCCEEEe
Q 014886 304 IVKGNLADVINI 315 (416)
Q Consensus 304 ~i~~~a~d~v~~ 315 (416)
+++ | +|.+++
T Consensus 215 ~l~-G-aD~V~i 224 (350)
T 3b0p_A 215 HLK-R-VDGVML 224 (350)
T ss_dssp HHT-T-SSEEEE
T ss_pred HHh-C-CCEEEE
Confidence 997 6 899876
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.081 Score=56.25 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC----------------------CChh----HHHHHHHHHHHh-CCCc--EEEEeCC-
Q 014886 188 AEAAELASKYRKQGFTTLKLKVG----------------------KNLK----EDIEVLRAIRAV-HPDS--SFILDAN- 237 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG----------------------~~~~----~d~~~v~avr~~-g~~~--~L~vDaN- 237 (416)
++..+.|+.+.+.||..+-|+.+ .+++ --.+.+++||++ ++++ .+++-.+
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~ 235 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEE 235 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 34466677778899999999764 2233 345678899997 7774 4566443
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCCceeee-------cC-C----CC--CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH
Q 014886 238 ---EGYKPQEAVEVLEKLYEMGVTPVLFE-------QP-V----HR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (416)
Q Consensus 238 ---~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP-~----~~--~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d 300 (416)
++|+.+++.++++.|++ ++. +++ ++ . .+ .+++..+++ ++..++||..--.+.++++
T Consensus 236 ~~~~g~~~~~~~~~~~~l~~-~~d--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~~~ 308 (690)
T 3k30_A 236 EIDGGITREDIEGVLRELGE-LPD--LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGL----KKLTTKPVVGVGRFTSPDA 308 (690)
T ss_dssp CSTTSCCHHHHHHHHHHHTT-SSS--EEEEECSCHHHHTCCTTTCCTTTTHHHHTTS----GGGCSSCEEECSCCCCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh-hcC--EEEEecccccccCCCCccCCccccHHHHHHH----HHHcCCeEEEeCCCCCHHH
Confidence 58999999999999998 443 332 11 1 11 112323333 3578999999889999999
Q ss_pred HHHHHHcCCCCEEEe
Q 014886 301 VKKIVKGNLADVINI 315 (416)
Q Consensus 301 ~~~~i~~~a~d~v~~ 315 (416)
..++++.|.+|.|.+
T Consensus 309 a~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 309 MVRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHCCCcceEEE
Confidence 999999999999964
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.046 Score=58.59 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEEE--EeC---
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFI--LDA--- 236 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L~--vDa--- 236 (416)
+++.+.|+.+.+.||..+.|+.+. ++ +--.+.|++||++ +++..+. +-.
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 345666777788999999998752 12 2246678899997 7775333 322
Q ss_pred --CCCCC-HHHHHHHHHHHHhCCCCc---e------eeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCH
Q 014886 237 --NEGYK-PQEAVEVLEKLYEMGVTP---V------LFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSL 298 (416)
Q Consensus 237 --N~~w~-~~~A~~~~~~L~~~~l~~---~------~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~ 298 (416)
.++|+ .+++.++++.|++. +.. . |-+...++ .+++..++++ +..++||.+.-.+.++
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~pvi~~G~i~~~ 303 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVK----QVSKKPVLGVGRYTDP 303 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHH----TTCSSCEECCSCCCCH
T ss_pred cCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHHH----HHCCCEEEEeCCCCCH
Confidence 25788 68899999999873 320 0 21222221 1233334443 5789999999999999
Q ss_pred HHHHHHHHcCCCCEEEe
Q 014886 299 DDVKKIVKGNLADVINI 315 (416)
Q Consensus 299 ~d~~~~i~~~a~d~v~~ 315 (416)
+++.++++.|.+|.|.+
T Consensus 304 ~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCCCEEEe
Confidence 99999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.034 Score=53.21 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=93.2
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCC---EEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFT---TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~KiKvG-----------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
|+..++...+++++.+.++.+.+.||. .+-+.++ .+++.-.+.+++||+.. ++.+.+-....|+.
T Consensus 95 p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~~ 173 (314)
T 2e6f_A 95 PLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFDI 173 (314)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCCH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 444556667888888888888888999 8998875 14445566788888863 35566666666898
Q ss_pred HHHHHHHHHHHhCC-CCceeee----------------cCCCC---------------CCHHHHHHhHHhhhccC-CCeE
Q 014886 243 QEAVEVLEKLYEMG-VTPVLFE----------------QPVHR---------------DDWEGLGHVSHIAKDKF-GVSV 289 (416)
Q Consensus 243 ~~A~~~~~~L~~~~-l~~~~iE----------------eP~~~---------------~d~~~~~~l~~~~r~~~-~iPI 289 (416)
++..++++.+++.+ +. +|- .|... ..++..++++ +.. ++||
T Consensus 174 ~~~~~~a~~~~~aG~~d--~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~----~~~~~ipv 247 (314)
T 2e6f_A 174 AHFDTAAAVLNEFPLVK--FVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY----RRCPDKLV 247 (314)
T ss_dssp HHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH----HHCTTSEE
T ss_pred HHHHHHHHHHHhcCCce--EEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH----HhcCCCCE
Confidence 99899999999988 63 442 11100 0123333343 356 8999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 290 AADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 290 a~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+.=-+.+.+|+.+++..| +|.+++
T Consensus 248 i~~GGI~~~~da~~~l~~G-Ad~V~i 272 (314)
T 2e6f_A 248 FGCGGVYSGEDAFLHILAG-ASMVQV 272 (314)
T ss_dssp EEESSCCSHHHHHHHHHHT-CSSEEE
T ss_pred EEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 9999999999999999988 688876
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.21 Score=48.08 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC----------ChhHHHHHHHHHHHh--------CCCcEEEEeCCCCCCHHHHHHH
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVGK----------NLKEDIEVLRAIRAV--------HPDSSFILDANEGYKPQEAVEV 248 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG~----------~~~~d~~~v~avr~~--------g~~~~L~vDaN~~w~~~~A~~~ 248 (416)
++++.+.++.+. .|+..+-+.++. +.+.-.+.+++||+. ++++.+.+--+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 566767666654 499999998862 122334567777775 3478888888888999999999
Q ss_pred HHHHHhCCCCceeeec-------------CCCCC------------CHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHH
Q 014886 249 LEKLYEMGVTPVLFEQ-------------PVHRD------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDV 301 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEe-------------P~~~~------------d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~ 301 (416)
++.+++.++. +|.= |.... .++..++++ +.. ++||.+.=-+.+..|+
T Consensus 231 a~~l~~~Gvd--~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~----~~~~~~ipVi~~GGI~~~~da 304 (336)
T 1f76_A 231 ADSLVRHNID--GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS----LELNGRLPIIGVGGIDSVIAA 304 (336)
T ss_dssp HHHHHHTTCS--EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH----HHHTTSSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCc--EEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHH
Confidence 9999998864 4430 10000 012223333 344 7999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 014886 302 KKIVKGNLADVINI 315 (416)
Q Consensus 302 ~~~i~~~a~d~v~~ 315 (416)
.++++.| +|.|++
T Consensus 305 ~~~l~~G-Ad~V~i 317 (336)
T 1f76_A 305 REKIAAG-ASLVQI 317 (336)
T ss_dssp HHHHHHT-CSEEEE
T ss_pred HHHHHCC-CCEEEe
Confidence 9999998 799987
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.44 Score=47.48 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch-hH----HHHHHHHHHHh-----CCCcEEEEeCC-
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL-KE----DIEVLRAIRAV-----HPDSSFILDAN- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~-~~----d~~~v~avr~~-----g~~~~L~vDaN- 237 (416)
..+.|+.+.+.||..|-|..+. ++ +. -++.|++||++ ++++.+.+=-+
T Consensus 172 F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~ 251 (419)
T 3l5a_A 172 YRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATP 251 (419)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEeccc
Confidence 3555677788999999999761 22 32 34567888885 34654443322
Q ss_pred -----C--CCCHHHHHHHHHHHHh-CCCCceeee------------cCCCC--CCHHHHHHhHHhhhccC--CCeEEeCC
Q 014886 238 -----E--GYKPQEAVEVLEKLYE-MGVTPVLFE------------QPVHR--DDWEGLGHVSHIAKDKF--GVSVAADE 293 (416)
Q Consensus 238 -----~--~w~~~~A~~~~~~L~~-~~l~~~~iE------------eP~~~--~d~~~~~~l~~~~r~~~--~iPIa~dE 293 (416)
+ +|+.+++.++++.|++ .++. ||+ .+... .+++-.+.+++ .. .+||.+.=
T Consensus 252 ~~~~~~~~G~~~ed~~~la~~L~~~~Gvd--~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~----~v~~~iPVI~~G 325 (419)
T 3l5a_A 252 EETRGSDLGYTIDEFNQLIDWVMDVSNIQ--YLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYE----HLAGRIPLIASG 325 (419)
T ss_dssp CEEETTEEEECHHHHHHHHHHHHHHSCCC--CEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHH----HHTTSSCEEECS
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeeCCccccccccCCCCccccHHHHHHHHH----HcCCCCeEEEEC
Confidence 2 8999999999999999 8764 543 11111 12223344443 33 59999988
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe
Q 014886 294 SCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 294 s~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+.++++..++++. +|.|.+
T Consensus 326 gI~t~e~Ae~~L~~--aDlVai 345 (419)
T 3l5a_A 326 GINSPESALDALQH--ADMVGM 345 (419)
T ss_dssp SCCSHHHHHHHGGG--CSEEEE
T ss_pred CCCCHHHHHHHHHh--CCcHHH
Confidence 99999999999987 898865
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.095 Score=50.62 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCC-CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
-+.+..++-+++|.+.|.+ .+--.++.+ +.+.++.++ +++.+||.+|-++ +..-+...++.| +|.+.++|+
T Consensus 43 ~D~~atv~Qi~~l~~aG~d--iVRvavp~~~~a~al~~I~----~~~~vPlvaDiHf-~~~lal~a~e~G-~dklRINPG 114 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCE--IVRVAVPHKEDVEALEEIV----KKSPMPVIADIHF-APSYAFLSMEKG-VHGIRINPG 114 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCC--EEEEECCSHHHHHHHHHHH----HHCSSCEEEECCS-CHHHHHHHHHTT-CSEEEECHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHH----hcCCCCEEEeCCC-CHHHHHHHHHhC-CCeEEECCc
Confidence 3577778888888888864 777777652 233455554 4789999999774 556666778776 799999999
Q ss_pred CCc-hHHHHHHHHHHHHcCCcEEEc
Q 014886 319 KVG-VLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 319 k~G-i~~~l~i~~~A~~~gi~~~~~ 342 (416)
.+| -....+++..|+++|+++.+|
T Consensus 115 Nig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 115 NIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp HHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCchhHHHHHHHHHHHcCCCEEEe
Confidence 998 567788999999999999886
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=94.18 E-value=1.5 Score=41.47 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=77.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCC
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGY 240 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~--g~~~~L--~vDaN-~~w 240 (416)
.+..+++++.+.++++.+.|...+||.=+. +.++-+++|++++++ +++..+ +-|+. ...
T Consensus 88 ~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~ 167 (295)
T 1s2w_A 88 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGW 167 (295)
T ss_dssp SSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccc
Confidence 344577788888999999999999987431 223458899999987 466555 57887 667
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
..+++++-++.+++.|....|+|-+++. .+..+++++.+ ...+|+...
T Consensus 168 g~~~ai~Ra~ay~eAGAd~i~~e~~~~~--~~~~~~i~~~~--~~~~P~i~~ 215 (295)
T 1s2w_A 168 GLDEALKRAEAYRNAGADAILMHSKKAD--PSDIEAFMKAW--NNQGPVVIV 215 (295)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCSSS--SHHHHHHHHHH--TTCSCEEEC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCCC--HHHHHHHHHHc--CCCCCEEEe
Confidence 7999999999999998776799965552 34466776522 123788754
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.67 E-value=3 Score=39.25 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCC-------------ChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEA 245 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-------------~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~~A 245 (416)
+..+++++.+.++++.+.|...+||.=+. +.++=+++|++++++ .++..+ +-|+ .....+++
T Consensus 92 Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~a 170 (287)
T 3b8i_A 92 GYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAV 170 (287)
T ss_dssp CSSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHH
Confidence 34588888889999999999999997542 335678899999997 356554 6899 77789999
Q ss_pred HHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
++-++.+++.|....|+|-+ + +.+..+++++ ..++|+..
T Consensus 171 i~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ii 209 (287)
T 3b8i_A 171 IQRTLAYQEAGADGICLVGV-R--DFAHLEAIAE----HLHIPLML 209 (287)
T ss_dssp HHHHHHHHHTTCSEEEEECC-C--SHHHHHHHHT----TCCSCEEE
T ss_pred HHHHHHHHHcCCCEEEecCC-C--CHHHHHHHHH----hCCCCEEE
Confidence 99999999988776799964 2 3456777764 67788874
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=1.9 Score=40.61 Aligned_cols=128 Identities=10% Similarity=0.148 Sum_probs=80.9
Q ss_pred eEeecCCCHHHHHHHHHHHHH-cCCCEEEEecCC------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 014886 179 DITIPIVSPAEAAELASKYRK-QGFTTLKLKVGK------------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~G~~~~KiKvG~------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A 245 (416)
...+...+++++.+.++.+.+ .|+..+.+.++. +++.-.+.++++|+.. ++.+.+=-...|+ +.
T Consensus 102 ~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~-~~pv~vk~~~~~~--~~ 178 (311)
T 1ep3_A 102 IANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVT--DI 178 (311)
T ss_dssp EEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSS--CS
T ss_pred EEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCChH--HH
Confidence 344555567887777777666 899999988761 3334467788888863 2344442222232 23
Q ss_pred HHHHHHHHhCCCCceeeec----------CCCC--------------CC----HHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 246 VEVLEKLYEMGVTPVLFEQ----------PVHR--------------DD----WEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEe----------P~~~--------------~d----~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
.++++.+++.++. +|-= +-.. .. ++.++++ ++..++||.+.=-+.+
T Consensus 179 ~~~a~~l~~~G~d--~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i----~~~~~ipvia~GGI~~ 252 (311)
T 1ep3_A 179 VPIAKAVEAAGAD--GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQV----AQDVDIPIIGMGGVAN 252 (311)
T ss_dssp HHHHHHHHHTTCS--EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHH----HTTCSSCEEECSSCCS
T ss_pred HHHHHHHHHcCCC--EEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHH----HHhcCCCEEEECCcCC
Confidence 4566777777764 3321 1000 00 1223333 3467899999999999
Q ss_pred HHHHHHHHHcCCCCEEEeC
Q 014886 298 LDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~k 316 (416)
.+++.++++.| +|.+++=
T Consensus 253 ~~d~~~~l~~G-Ad~V~vg 270 (311)
T 1ep3_A 253 AQDVLEMYMAG-ASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHT-CSEEEEC
T ss_pred HHHHHHHHHcC-CCEEEEC
Confidence 99999999988 7999873
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.97 E-value=1.3 Score=42.85 Aligned_cols=131 Identities=10% Similarity=0.131 Sum_probs=85.5
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCC-EEEEecC-----------CChhHHHHHHHHHHHhC--C-CcEEEEeCCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-----------KNLKEDIEVLRAIRAVH--P-DSSFILDANEGYK 241 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~KiKvG-----------~~~~~d~~~v~avr~~g--~-~~~L~vDaN~~w~ 241 (416)
|+..++...+++++.+.++.+.+.||. .|-|.++ .+++.-.+.+++||+.. | -++|+.| ++
T Consensus 130 pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~----~~ 205 (345)
T 3oix_A 130 NHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY----FD 205 (345)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC----CC
T ss_pred CEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC----CC
Confidence 445667677899999988888778998 8999987 13344455677777652 3 2455544 67
Q ss_pred HHHHHHHHHHHHhCCCCce----------eee--cCCC---------------CCCHHHHHHhHHhhhccC--CCeEEeC
Q 014886 242 PQEAVEVLEKLYEMGVTPV----------LFE--QPVH---------------RDDWEGLGHVSHIAKDKF--GVSVAAD 292 (416)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~----------~iE--eP~~---------------~~d~~~~~~l~~~~r~~~--~iPIa~d 292 (416)
..+..+.++.+...++... -+. .|.. +-.++-.++++ +.. .+||...
T Consensus 206 ~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~----~~~~~~ipIIg~ 281 (345)
T 3oix_A 206 IVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY----KRLNPSIQIIGT 281 (345)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH----TTSCTTSEEEEE
T ss_pred HHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH----HHcCCCCcEEEE
Confidence 7776677776665554200 022 2211 00122233333 455 6999999
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 293 ESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 293 Es~~~~~d~~~~i~~~a~d~v~~k 316 (416)
=-+.+.+|+.+++..| +|.|++=
T Consensus 282 GGI~s~~da~~~l~aG-Ad~V~ig 304 (345)
T 3oix_A 282 GGVXTGRDAFEHILCG-ASMVQIG 304 (345)
T ss_dssp SSCCSHHHHHHHHHHT-CSEEEES
T ss_pred CCCCChHHHHHHHHhC-CCEEEEC
Confidence 9999999999999988 6999874
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.83 Score=44.43 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=87.5
Q ss_pred eeeeEeecCCCHHHHHHHHHHHH---HcCCCEEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~---~~G~~~~KiKvG-----------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~ 241 (416)
.|+..++...+++++.+.++.+. +.|+..|-|.++ .+++.-.+.+++|++.. +..+.|=-.-.|+
T Consensus 127 ~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-~~PV~vKi~p~~d 205 (354)
T 4ef8_A 127 KPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFD 205 (354)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-CSCEEEEECCCCS
T ss_pred CcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-CCCeEEEecCCCC
Confidence 34455666678888877777665 568999999987 13444556678888763 2344444444477
Q ss_pred HHHHHHHHHHHHhCC-CCceee----------------ecCC---------------CCCCHHHHHHhHHhhhccC-CCe
Q 014886 242 PQEAVEVLEKLYEMG-VTPVLF----------------EQPV---------------HRDDWEGLGHVSHIAKDKF-GVS 288 (416)
Q Consensus 242 ~~~A~~~~~~L~~~~-l~~~~i----------------EeP~---------------~~~d~~~~~~l~~~~r~~~-~iP 288 (416)
.++..++++.+++.+ +. +| +.|. .+-+++..+++++ .. .+|
T Consensus 206 ~~~~~~~a~~~~~~Gg~d--~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~----~~~~ip 279 (354)
T 4ef8_A 206 FAHFDAAAEILNEFPKVQ--FITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR----RCPGKL 279 (354)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH----HCTTSE
T ss_pred HHHHHHHHHHHHhCCCcc--EEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH----hCCCCC
Confidence 777778888888876 32 22 1121 1112333444443 34 699
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|...=-+.+.+|+.+++..| +|.|++
T Consensus 280 II~~GGI~s~~da~~~l~aG-Ad~V~v 305 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHVLAG-ASMVQV 305 (354)
T ss_dssp EEEESCCCSHHHHHHHHHHT-EEEEEE
T ss_pred EEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 99998999999999999988 699987
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.81 Score=43.38 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=78.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecC--------------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG--------------~~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~~ 244 (416)
+..+++++.+.++.+.+.|...+||.=+ .+.++-+++|++.+++ ++++.| |.|+......++
T Consensus 93 Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~glde 172 (298)
T 3eoo_A 93 GWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDA 172 (298)
T ss_dssp CSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHH
Confidence 3457888888889999999999998632 1345668899998886 466554 689886667899
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
|++-++...+.|....|+|-+- +.+.++++++ ..++|+..
T Consensus 173 ai~Ra~ay~~AGAD~if~~~~~---~~ee~~~~~~----~~~~Pl~~ 212 (298)
T 3eoo_A 173 AIERAIAYVEAGADMIFPEAMK---TLDDYRRFKE----AVKVPILA 212 (298)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC---SHHHHHHHHH----HHCSCBEE
T ss_pred HHHHHHhhHhcCCCEEEeCCCC---CHHHHHHHHH----HcCCCeEE
Confidence 9999999999887767998873 5677788775 45678754
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.62 Score=42.54 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+++++.+++++|-+-|+. +||=++...+ .+.++++++ +. ++-|-+| ++.+.++++.+++.|+ |++..-
T Consensus 44 ~~~~a~~~a~al~~gGi~--~iEvt~~t~~a~e~I~~l~~----~~~~~~iGaG-TVlt~~~a~~Ai~AGA-~fIvsP-- 113 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLP--AAEITFRSDAAVEAIRLLRQ----AQPEMLIGAG-TILNGEQALAAKEAGA-TFVVSP-- 113 (232)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH----HCTTCEEEEE-CCCSHHHHHHHHHHTC-SEEECS--
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHH----hCCCCEEeEC-CcCCHHHHHHHHHcCC-CEEEeC--
Confidence 567899999999999985 9998886543 444555553 33 4445555 6888999999999995 877531
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
|.. .++++.|+++|+++++|+++-+.+
T Consensus 114 --~~~--~~vi~~~~~~gi~~ipGv~TptEi 140 (232)
T 4e38_A 114 --GFN--PNTVRACQEIGIDIVPGVNNPSTV 140 (232)
T ss_dssp --SCC--HHHHHHHHHHTCEEECEECSHHHH
T ss_pred --CCC--HHHHHHHHHcCCCEEcCCCCHHHH
Confidence 122 456788999999999998854443
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=91.71 E-value=5.7 Score=37.05 Aligned_cols=118 Identities=11% Similarity=0.164 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHh----CCCcEE--EEeCCCC---C----CHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV----HPDSSF--ILDANEG---Y----KPQE 244 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~----g~~~~L--~vDaN~~---w----~~~~ 244 (416)
+++++.+.++++.+.|...+||.=+. +.++=+++|++++++ +.++.+ +-|+... . ..++
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ 169 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE 169 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence 68888899999999999999997542 456778899999886 666555 4566432 1 3789
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC--CCCCCHHHHHHHHHcCCCCEEE
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d--Es~~~~~d~~~~i~~~a~d~v~ 314 (416)
+++-++.+++.|....|+|-+ + +.+..+++++ ..++|+..- ....+. .++-+.| +..+.
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n~~~~~~~~~~---~eL~~lG-v~~v~ 230 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLA-L--QSQDIRALAD----ALRVPLNVMAFPGSPVP---RALLDAG-AARVS 230 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTC-C--CHHHHHHHHH----HCSSCEEEECCTTSCCH---HHHHHTT-CSEEE
T ss_pred HHHHHHHHHHCCCCEEEECCC-C--CHHHHHHHHH----hcCCCEEEecCCCCCCH---HHHHHcC-CcEEE
Confidence 999999999988766799885 2 3456777775 566787543 334444 4444556 55554
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.59 E-value=4.8 Score=36.05 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCEEEEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-----
Q 014886 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--~~--~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (416)
++++.+.+.|...+-+.... ++ ....+.++.+|+.+++..+.++.+ +.+++.+. .+.+.. |+
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~a----~~~Gad--~i~~~v~ 162 (234)
T 1yxy_A 92 TEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLVA----HQAGID--FVGTTLS 162 (234)
T ss_dssp HHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHHH----HHTTCS--EEECTTT
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHHH----HHcCCC--EEeeecc
Confidence 44666788999988776542 12 133567888888877888999875 56665443 334443 44
Q ss_pred --e---cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 --E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 --E---eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ +.....+++.++++++ . ++||..+=-+.+.+++.++++.| +|.+.+
T Consensus 163 g~~~~~~~~~~~~~~~i~~~~~----~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~v 214 (234)
T 1yxy_A 163 GYTPYSRQEAGPDVALIEALCK----A-GIAVIAEGKIHSPEEAKKINDLG-VAGIVV 214 (234)
T ss_dssp TSSTTSCCSSSCCHHHHHHHHH----T-TCCEEEESCCCSHHHHHHHHTTC-CSEEEE
T ss_pred ccCCCCcCCCCCCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 1 2222345666776653 4 89999988899999999999988 688765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=91.39 E-value=7.2 Score=35.39 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=96.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..+++++.+.++.+++.|++.+.+.... ....+.++++++..|+..+-. ..-.+.+++...++ .|.. |
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~e~I~~l~~~~~~~~iGa--GTVlt~~~a~~Ai~----AGA~--f 109 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS--DAAVEAIRLLRQAQPEMLIGA--GTILNGEQALAAKE----AGAT--F 109 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEE--ECCCSHHHHHHHHH----HTCS--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCCEEeE--CCcCCHHHHHHHHH----cCCC--E
Confidence 345678888999999999999999988753 234677888888877755544 45678877655433 4543 6
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHc-CCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~-gi~~ 339 (416)
+=-|. .+.+-.+..+ +.++|+..| +.|+.++.+.++.| +|++.+=+.. .|..+.++ ++..-+ ++++
T Consensus 110 IvsP~--~~~~vi~~~~-----~~gi~~ipG--v~TptEi~~A~~~G-ad~vK~FPa~~~gG~~~lk--al~~p~p~ip~ 177 (232)
T 4e38_A 110 VVSPG--FNPNTVRACQ-----EIGIDIVPG--VNNPSTVEAALEMG-LTTLKFFPAEASGGISMVK--SLVGPYGDIRL 177 (232)
T ss_dssp EECSS--CCHHHHHHHH-----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEECSTTTTTHHHHHH--HHHTTCTTCEE
T ss_pred EEeCC--CCHHHHHHHH-----HcCCCEEcC--CCCHHHHHHHHHcC-CCEEEECcCccccCHHHHH--HHHHHhcCCCe
Confidence 75564 3444333322 458999987 67999999999998 6999887754 34333333 333333 6888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++-+-+
T Consensus 178 ~ptGGI 183 (232)
T 4e38_A 178 MPTGGI 183 (232)
T ss_dssp EEBSSC
T ss_pred eeEcCC
Confidence 886654
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.79 Score=43.21 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCC--C-------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPV--H-------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~--~-------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
.++.++.+++++.|++.++. +||.=. . .++++-++.++ +..+++++.- +.+..++.++++.|
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~p~~~~~~e~~~~i~----~~~~~~v~~l--~~n~~~i~~a~~~G- 92 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYA--RIEATSFVSPKWVPQLADSREVMAGIR----RADGVRYSVL--VPNMKGYEAAAAAH- 92 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSC----CCSSSEEEEE--CSSHHHHHHHHHTT-
T ss_pred CcCHHHHHHHHHHHHHcCcC--EEEEccCcCccccccccCHHHHHHHHH----hCCCCEEEEE--eCCHHHHHHHHHCC-
Confidence 37899999999999999985 888832 1 13444445543 2357888542 26789999999987
Q ss_pred CCEEEeCC--C--------CCc----hHHHHHHHHHHHHcCCcEE
Q 014886 310 ADVINIKL--A--------KVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 310 ~d~v~~k~--~--------k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.+.+.. + +.+ +..+.+++++|+++|+.+.
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~ 137 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR 137 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 68888873 3 333 3456778999999999986
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=90.65 E-value=3.5 Score=38.08 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=79.8
Q ss_pred EeecCCCHHHHHHHHHHHHH--cCCCEEEEecC-------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRK--QGFTTLKLKVG-------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~--~G~~~~KiKvG-------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
.|.+..+.+|.+..++-.++ -|-+-||+.|- +|+.+-++..+.+.+ .+++.+.-.+. ++ ..++
T Consensus 79 NTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~--~Gf~Vlpy~~d--d~----~~ak 150 (265)
T 1wv2_A 79 NTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVK--DGFDVMVYTSD--DP----IIAR 150 (265)
T ss_dssp ECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHT--TTCEEEEEECS--CH----HHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHH--CCCEEEEEeCC--CH----HHHH
Confidence 45677788887666665555 36788999986 344445444444444 34444422222 13 4567
Q ss_pred HHHhCCCCceeeecCCCC--------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 251 KLYEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++++.+.. .+ .|... -+++-++++.+ ..++||..+=-+.++.|+..+++.| +|.+.+
T Consensus 151 rl~~~G~~--aV-mPlg~pIGsG~Gi~~~~lI~~I~e----~~~vPVI~eGGI~TPsDAa~AmeLG-AdgVlV 215 (265)
T 1wv2_A 151 QLAEIGCI--AV-MPLAGLIGSGLGICNPYNLRIILE----EAKVPVLVDAGVGTASDAAIAMELG-CEAVLM 215 (265)
T ss_dssp HHHHSCCS--EE-EECSSSTTCCCCCSCHHHHHHHHH----HCSSCBEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred HHHHhCCC--EE-EeCCccCCCCCCcCCHHHHHHHHh----cCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 78888864 66 44321 35666777664 5789999999999999999999998 577766
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=90.64 E-value=2.9 Score=42.25 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee----
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (416)
+..+.++++++.|+..+-+... .......+.++.+|+..|++.+.+- +..+.++| +.+.+.++. +|-
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a----~~l~~~G~d--~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGT----EALIKAGAD--AVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHH----HHHHHcCCC--EEEEcCC
Confidence 3456778888999999988665 3456678889999998777777763 35678877 344556654 442
Q ss_pred ----------cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 264 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 264 ----------eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
..........+..+.+.. ...++||.++=-+.+..|+.+++..| +|.+++
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipvia~GGI~~~~di~kala~G-Ad~V~i 368 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVA-RKYDVPIIADGGIRYSGDIVKALAAG-AESVMV 368 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCccccccccCCCCccHHHHHHHHHHHH-hhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 111112344455554322 24689999999999999999999998 698874
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=90.60 E-value=3.5 Score=39.31 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=76.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCC--------------ChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~--------------~~~~d~~~v~avr~~g--~~~~L--~vDaN~~w~~~~ 244 (416)
+..+++++.+.++++.+.|...+||.=+. +.++-+++|++++++. ++..| +-|+......++
T Consensus 111 Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ 190 (318)
T 1zlp_A 111 GGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEE 190 (318)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHH
Confidence 34478888899999999999999986431 2346677999999873 55554 567765455689
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
+++-++.+++.|....|+|-+ + +.+..+++++ ..++|+..
T Consensus 191 ai~Ra~Ay~eAGAd~i~~e~~-~--~~e~~~~i~~----~l~~P~la 230 (318)
T 1zlp_A 191 GIRRANLYKEAGADATFVEAP-A--NVDELKEVSA----KTKGLRIA 230 (318)
T ss_dssp HHHHHHHHHHTTCSEEEECCC-C--SHHHHHHHHH----HSCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEcCC-C--CHHHHHHHHH----hcCCCEEE
Confidence 999999999998776799975 2 4566777775 56799854
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=90.38 E-value=3 Score=39.54 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=84.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecC--------------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCCCCH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKP 242 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG--------------~~~~~d~~~v~avr~~----g~~~~L--~vDaN~~w~~ 242 (416)
+..+++++.+.++.+.+.|...+||.=. .+.++-+++|++.+++ ++++.| |.|+......
T Consensus 98 Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gl 177 (307)
T 3lye_A 98 GYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGY 177 (307)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCH
Confidence 4457888888889999999999998632 1345667888888764 567654 6898766679
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC--CC----CCCHHHHHHHHHcCCCCEEEeC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES----CRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d--Es----~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++|++.++...+.|....|+|-+- +.+.++++++.+. ++|+... |. ..+..++ -+.| +.++..-
T Consensus 178 deAi~Ra~ay~eAGAD~ifi~~~~---~~~~~~~i~~~~~---~~Pv~~n~~~~g~~p~~t~~eL---~~lG-v~~v~~~ 247 (307)
T 3lye_A 178 EECIERLRAARDEGADVGLLEGFR---SKEQAAAAVAALA---PWPLLLNSVENGHSPLITVEEA---KAMG-FRIMIFS 247 (307)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCS---CHHHHHHHHHHHT---TSCBEEEEETTSSSCCCCHHHH---HHHT-CSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecCCC---CHHHHHHHHHHcc---CCceeEEeecCCCCCCCCHHHH---HHcC-CeEEEEC
Confidence 999999999998887667998653 4566777765221 3666431 21 3445444 4446 4666443
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=90.20 E-value=3.8 Score=36.38 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=71.9
Q ss_pred HHHHHHHcCCCEEEEecCC--Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee--ecCC-
Q 014886 193 LASKYRKQGFTTLKLKVGK--NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQPV- 266 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~--~~-~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--EeP~- 266 (416)
+++.+.+.|...+-+.... ++ ..-.+.++.+|+.+|+..+.+|.+ +.+++.+ +.+.+.. +| --+.
T Consensus 80 ~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~~e~~~----~~~~G~d--~i~~~~~g~ 150 (223)
T 1y0e_A 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TVEEAKN----AARLGFD--YIGTTLHGY 150 (223)
T ss_dssp HHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SHHHHHH----HHHTTCS--EEECTTTTS
T ss_pred HHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CHHHHHH----HHHcCCC--EEEeCCCcC
Confidence 4455677899888776642 22 233567888898877888888875 5776654 4455543 33 1111
Q ss_pred ---------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 267 ---------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 267 ---------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
...+++.+++++ +..++||..+=-+.+.+++.++++.| +|.+.+
T Consensus 151 t~~~~~~~~~~~~~~~~~~~~----~~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~v 203 (223)
T 1y0e_A 151 TSYTQGQLLYQNDFQFLKDVL----QSVDAKVIAEGNVITPDMYKRVMDLG-VHCSVV 203 (223)
T ss_dssp STTSTTCCTTHHHHHHHHHHH----HHCCSEEEEESSCCSHHHHHHHHHTT-CSEEEE
T ss_pred cCCCCCCCCCcccHHHHHHHH----hhCCCCEEEecCCCCHHHHHHHHHcC-CCEEEE
Confidence 011233444444 35689999998899999999999998 688866
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.12 E-value=2.3 Score=40.12 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------------ChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEAVE 247 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~--------------~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~~A~~ 247 (416)
+++++.+.++++.+.|...+||.=+. +.++-+++|++++++ ++++.+ +.|+......+++++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 78888899999999999999987541 234567789999887 456554 567665556799999
Q ss_pred HHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe--CC----CCCCHHHHHHHHHcCCCCEEEe
Q 014886 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DE----SCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~--dE----s~~~~~d~~~~i~~~a~d~v~~ 315 (416)
-++.+++.|....|+|-+ + +.+..+++++ ..++|+.. .| ...+. .++-+.| ++.+..
T Consensus 172 ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~iP~~~N~~~~g~~p~~~~---~eL~~~G-~~~v~~ 234 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFAD----AVQVPILANITEFGATPLFTT---DELRSAH-VAMALY 234 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-C--SHHHHHHHHH----HHCSCBEEECCSSSSSCCCCH---HHHHHTT-CSEEEE
T ss_pred HHHHHHHcCCCEEEEeCC-C--CHHHHHHHHH----HcCCCEEEEecccCCCCCCCH---HHHHHcC-CCEEEE
Confidence 999999998776799975 2 4566777775 55788753 23 12333 4445556 566654
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=90.09 E-value=13 Score=35.18 Aligned_cols=144 Identities=18% Similarity=0.212 Sum_probs=93.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecC--------------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCCCCH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKP 242 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG--------------~~~~~d~~~v~avr~~----g~~~~L--~vDaN~~w~~ 242 (416)
+..+++++...++.+.+.|...+||.=. .+.++=+++|++.+++ ++++-| |.|+......
T Consensus 90 Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gl 169 (302)
T 3fa4_A 90 GYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGY 169 (302)
T ss_dssp TTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCH
Confidence 4457888888889999999999998632 1456778899988864 577544 7898776789
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC-CCeEEeC--CC----CCCHHHHHHHHHcCCCCEEEe
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAAD--ES----CRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-~iPIa~d--Es----~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++|++.++...+.|-...|+|-+. +.+.++++.+ .. ++|+... |. ..+..++. +.| +.++..
T Consensus 170 deAi~Ra~ay~eAGAD~ifi~g~~---~~~ei~~~~~----~~~~~Pl~~n~~~~g~~p~~~~~eL~---~lG-v~~v~~ 238 (302)
T 3fa4_A 170 EESVARLRAARDAGADVGFLEGIT---SREMARQVIQ----DLAGWPLLLNMVEHGATPSISAAEAK---EMG-FRIIIF 238 (302)
T ss_dssp HHHHHHHHHHHTTTCSEEEETTCC---CHHHHHHHHH----HTTTSCEEEECCTTSSSCCCCHHHHH---HHT-CSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEeecCCC---CHHHHHHHHH----HhcCCceeEEEecCCCCCCCCHHHHH---HcC-CCEEEE
Confidence 999999999999887667998864 3566777765 23 4676542 21 33444444 446 566655
Q ss_pred CCCCCc--hHHHHHHHHHHHHcCC
Q 014886 316 KLAKVG--VLGALEIIEVVRASGL 337 (416)
Q Consensus 316 k~~k~G--i~~~l~i~~~A~~~gi 337 (416)
-..-.. .....+.+.--++.|.
T Consensus 239 ~~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 239 PFAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHcCC
Confidence 444322 1223344444444554
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=89.08 E-value=9.9 Score=35.67 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=76.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--CCcEE--EEeCC-CCC
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--PDSSF--ILDAN-EGY 240 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~~~~L--~vDaN-~~w 240 (416)
.+..+++++.+.++++.+.|...+||.=+. +.++=+++|++++++. ++..+ +-|+. ...
T Consensus 84 ~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~ 163 (290)
T 2hjp_A 84 TGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_dssp TTTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccc
Confidence 344578888889999999999999987431 1224478999999873 55554 57887 667
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC--CeEEeC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAAD 292 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~--iPIa~d 292 (416)
..+++++-++.+++.|....|+|--++. .+..+++++ ..+ +|+...
T Consensus 164 g~~~ai~Ra~ay~eAGAd~i~~e~~~~~--~~~~~~i~~----~~~~~vP~i~n 211 (290)
T 2hjp_A 164 GQQEAVRRGQAYEEAGADAILIHSRQKT--PDEILAFVK----SWPGKVPLVLV 211 (290)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCSS--SHHHHHHHH----HCCCSSCEEEC
T ss_pred cHHHHHHHHHHHHHcCCcEEEeCCCCCC--HHHHHHHHH----HcCCCCCEEEe
Confidence 7999999999999988766799982232 244567765 345 898864
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=88.97 E-value=3.4 Score=36.22 Aligned_cols=96 Identities=25% Similarity=0.284 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
.+.+++.++++.+.+.++. ++|=-+...+ .+.++++++.. ..+.+|..| ++.+.+++..+.+.| +|++ +-+.
T Consensus 19 ~~~~~~~~~~~~~~~~G~~--~iev~~~~~~~~~~i~~ir~~~--~~~~~ig~~-~v~~~~~~~~a~~~G-ad~i-v~~~ 91 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFLK--EKGAIIGAG-TVTSVEQCRKAVESG-AEFI-VSPH 91 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHHH--HTTCEEEEE-SCCSHHHHHHHHHHT-CSEE-ECSS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHHC--CCCcEEEec-ccCCHHHHHHHHHcC-CCEE-EcCC
Confidence 3688999999999998875 8874333322 22355554311 114777776 467899999988887 6998 5443
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
. . ..+++.|+++|++++++.+..+
T Consensus 92 ~---~--~~~~~~~~~~g~~vi~g~~t~~ 115 (205)
T 1wa3_A 92 L---D--EEISQFCKEKGVFYMPGVMTPT 115 (205)
T ss_dssp C---C--HHHHHHHHHHTCEEECEECSHH
T ss_pred C---C--HHHHHHHHHcCCcEECCcCCHH
Confidence 2 2 3467888899999999775433
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=88.94 E-value=3.1 Score=40.29 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCCC----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDANE---- 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDaN~---- 238 (416)
..+.|+++++.||..|-|+.+. +++ --++.|++||++ +++ +-+++-++.
T Consensus 154 F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g 233 (358)
T 4a3u_A 154 YEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQG 233 (358)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCC
Confidence 4666778889999999999751 222 245678899997 665 345554432
Q ss_pred CC---CHHHHHHHHHHHHhCCCCceeee-------cCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 239 GY---KPQEAVEVLEKLYEMGVTPVLFE-------QPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 239 ~w---~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
.+ +.++.+.+++.+++.++. +++ .+...... .-.++++ +....||+.+ ...+++...++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~a~~ik----~~~~~~v~~~-g~~~~~~ae~~l~~ 306 (358)
T 4a3u_A 234 TVDSHPEQVFIPAAKMLSDLDIA--FLGMREGAVDGTFGKTDQPKLSPEIR----KVFKPPLVLN-QDYTFETAQAALDS 306 (358)
T ss_dssp BCCSSTHHHHHHHHHHHHHHTCS--EEEEECCBTTCSSSBCSSCCCHHHHH----HHCCSCEEEE-SSCCHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHhhhccCcc--ccccccccccCcccccccHHHHHHHH----HhcCCcEEEe-CCCCHHHHHHHHHc
Confidence 22 355667788888887653 433 12221111 1122232 3567788876 46789999999999
Q ss_pred CCCCEEEe
Q 014886 308 NLADVINI 315 (416)
Q Consensus 308 ~a~d~v~~ 315 (416)
|.+|.|-+
T Consensus 307 G~aD~V~~ 314 (358)
T 4a3u_A 307 GVADAISF 314 (358)
T ss_dssp TSCSEEEE
T ss_pred CCceEeHh
Confidence 99999854
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.27 E-value=5.5 Score=35.81 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cC----CChhHHHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLK--VG----KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiK--vG----~~~~~d~~~v~avr~~g~~~--~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
....-..+++++.+.|+..+.+- +| .+.+.-.+.+++|++..+.+ ++++.. ..|+.++..++++.+.+.|.
T Consensus 68 ~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~-~~l~~~~~~~~a~~a~eaGa 146 (225)
T 1mzh_A 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNEEEIKKAVEICIEAGA 146 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG-GGCCHHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeC-CCCCHHHHHHHHHHHHHhCC
Confidence 34444556677888999999954 44 24444455688888873233 333343 45899889999999999887
Q ss_pred CceeeecCC----CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 258 TPVLFEQPV----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 258 ~~~~iEeP~----~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
. +|-=-. ..-+++..+.+++.. ...+||.+.=-+.+.+++.++++.| +|.+
T Consensus 147 d--~I~tstg~~~gga~~~~i~~v~~~v--~~~ipVia~GGI~t~~da~~~l~aG-A~~i 201 (225)
T 1mzh_A 147 D--FIKTSTGFAPRGTTLEEVRLIKSSA--KGRIKVKASGGIRDLETAISMIEAG-ADRI 201 (225)
T ss_dssp S--EEECCCSCSSSCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTT-CSEE
T ss_pred C--EEEECCCCCCCCCCHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHHHHhC-chHH
Confidence 4 773222 111456666665421 2268998877888999999999988 5743
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.84 E-value=17 Score=36.16 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=55.6
Q ss_pred CcE-EEEeCCCCCCHHHHHHHHHHHHhCCCCce-----eeecC----CCCC------------CHHHHHHhHHhhhccC-
Q 014886 229 DSS-FILDANEGYKPQEAVEVLEKLYEMGVTPV-----LFEQP----VHRD------------DWEGLGHVSHIAKDKF- 285 (416)
Q Consensus 229 ~~~-L~vDaN~~w~~~~A~~~~~~L~~~~l~~~-----~iEeP----~~~~------------d~~~~~~l~~~~r~~~- 285 (416)
+.. +.|=-...|+.++..++++.+++.++.-. ...++ +... .++-.++++ +..
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~----~~v~ 371 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMY----NYTN 371 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHH----HHTT
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHH----HHcC
Confidence 445 56666666888888999999998876411 11211 0000 012233343 355
Q ss_pred -CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 286 -GVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 286 -~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.+||.+.=-+.+.+|+.+.+..| +|.||+=
T Consensus 372 ~~iPVIg~GGI~s~~DA~e~l~aG-Ad~Vqig 402 (443)
T 1tv5_A 372 KQIPIIASGGIFSGLDALEKIEAG-ASVCQLY 402 (443)
T ss_dssp TCSCEEEESSCCSHHHHHHHHHTT-EEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 79999999999999999999998 7999873
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=87.71 E-value=13 Score=32.26 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=89.3
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
..+...++++..+.++.+.+.|+..+.+..+.+ .-.+.++.+|+.. ++..+.++. ..+++++....+ .+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~--v~~~~~~~~a~~----~Gad 85 (205)
T 1wa3_A 14 AVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGT--VTSVEQCRKAVE----SGAE 85 (205)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEES--CCSHHHHHHHHH----HTCS
T ss_pred EEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecc--cCCHHHHHHHHH----cCCC
Confidence 345556788888888989999999998877632 2234577788874 466666653 457777644332 4543
Q ss_pred ceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHc-CC
Q 014886 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS-GL 337 (416)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~-gi 337 (416)
++=.|... .+ +.+..+ +.++|+.. .+.|..++.+.++.| +|++.+.+...+ ..-.+.++.+.. ++
T Consensus 86 --~iv~~~~~--~~-~~~~~~----~~g~~vi~--g~~t~~e~~~a~~~G-ad~vk~~~~~~~--g~~~~~~l~~~~~~~ 151 (205)
T 1wa3_A 86 --FIVSPHLD--EE-ISQFCK----EKGVFYMP--GVMTPTELVKAMKLG-HTILKLFPGEVV--GPQFVKAMKGPFPNV 151 (205)
T ss_dssp --EEECSSCC--HH-HHHHHH----HHTCEEEC--EECSHHHHHHHHHTT-CCEEEETTHHHH--HHHHHHHHHTTCTTC
T ss_pred --EEEcCCCC--HH-HHHHHH----HcCCcEEC--CcCCHHHHHHHHHcC-CCEEEEcCcccc--CHHHHHHHHHhCCCC
Confidence 66334322 22 223222 46899987 356788999999887 699877653221 112233444455 78
Q ss_pred cEEEccCC
Q 014886 338 NLMIGGMV 345 (416)
Q Consensus 338 ~~~~~~~~ 345 (416)
+++..+.+
T Consensus 152 pvia~GGI 159 (205)
T 1wa3_A 152 KFVPTGGV 159 (205)
T ss_dssp EEEEBSSC
T ss_pred cEEEcCCC
Confidence 88876544
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.53 E-value=19 Score=33.53 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCEEEEec-----------CCChhHHHHHHHH----HHHhCCCcE--EE--EeCC--CCCCHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKV-----------GKNLKEDIEVLRA----IRAVHPDSS--FI--LDAN--EGYKPQEAVEVLE 250 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKv-----------G~~~~~d~~~v~a----vr~~g~~~~--L~--vDaN--~~w~~~~A~~~~~ 250 (416)
+.++++.+.|++.+-+-+ +.+.++.+++++. .++.|-.+. |. +++. ..++++++.++++
T Consensus 83 ~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~ 162 (295)
T 1ydn_A 83 KGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTE 162 (295)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHH
Confidence 345566778999888775 2356667766443 333343322 22 2222 4578999999999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC-CeEEeC---CCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAAD---ESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~-iPIa~d---Es~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.+.+.++....|=+..-.-......++-+.+++..+ +||..- -+-.........++.| ++.++.-+
T Consensus 163 ~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG-~~~vd~sv 232 (295)
T 1ydn_A 163 QLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKG-LRVFDASV 232 (295)
T ss_dssp HHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHT-CCEEEEBT
T ss_pred HHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhC-CCEEEecc
Confidence 998888754556665544455555554444445565 777642 2223334556777877 57777765
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=86.45 E-value=1.4 Score=45.38 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChhH-------------HHHHHHHHHHhCC--CcEEEEeCC-----------------
Q 014886 190 AAELASKYRKQGFTTLKLKVGKNLKE-------------DIEVLRAIRAVHP--DSSFILDAN----------------- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~~~~~-------------d~~~v~avr~~g~--~~~L~vDaN----------------- 237 (416)
+.+.++++.+.|... +-+|...-. +.+.++.+.+.++ .+.+.+|+.
T Consensus 349 ~~~~a~~~l~aGad~--V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~ 426 (555)
T 1jvn_A 349 ALEVASLYFRSGADK--VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFET 426 (555)
T ss_dssp HHHHHHHHHHHTCSE--EEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEEC
T ss_pred HHHHHHHHHHcCCCE--EEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccc
Confidence 456677888889764 445421122 2467888888743 477889983
Q ss_pred ------C-----------CCCH---HHHHHHHHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 238 ------E-----------GYKP---QEAVEVLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 238 ------~-----------~w~~---~~A~~~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
+ +|+. ..+.++++.++++++. ..+=... .-.|++.++++++ ..++||.+
T Consensus 427 ~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~-~il~t~~~~dG~~~G~d~~li~~l~~----~~~iPVIa 501 (555)
T 1jvn_A 427 EYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAG-EILLNCIDKDGSNSGYDLELIEHVKD----AVKIPVIA 501 (555)
T ss_dssp SSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCC-EEEECCGGGTTTCSCCCHHHHHHHHH----HCSSCEEE
T ss_pred cccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCCHHHHHHHHH----hCCccEEE
Confidence 2 3432 2367788999998865 3332221 1236777787764 67899999
Q ss_pred CCCCCCHHHHHHHHH-cCCCCEEEeCCCCC-chHHHHHHHHHHHHcCCcE
Q 014886 292 DESCRSLDDVKKIVK-GNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 292 dEs~~~~~d~~~~i~-~~a~d~v~~k~~k~-Gi~~~l~i~~~A~~~gi~~ 339 (416)
.=-+.+.+|+.++++ .| +|.+.+=-... |-....++.++++..|+++
T Consensus 502 sGGi~s~~d~~~~~~~~G-~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 502 SSGAGVPEHFEEAFLKTR-ADACLGAGMFHRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp CSCCCSHHHHHHHHHHSC-CSEEEESHHHHTTSCCHHHHHHHHHHTTCCC
T ss_pred ECCCCCHHHHHHHHHhcC-ChHHHHHHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 888999999999998 55 56665422111 2112345566778888875
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=86.18 E-value=1.9 Score=39.18 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=86.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCC-cEEEEeCC---C-------CCCH--
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDAN---E-------GYKP-- 242 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~-~~L~vDaN---~-------~w~~-- 242 (416)
|+....+..++++ ++++.+.|...+ -+|...-.+.+.+..+++. +.+ +.+.+|+. + +|..
T Consensus 76 pvi~~ggI~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~ 149 (253)
T 1thf_D 76 PFTVGGGIHDFET----ASELILRGADKV--SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNT 149 (253)
T ss_dssp CEEEESSCCSHHH----HHHHHHTTCSEE--EESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEE
T ss_pred CEEEeCCCCCHHH----HHHHHHcCCCEE--EEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcccc
Confidence 3333444556654 455666787654 5553222333456666655 543 46888884 2 3421
Q ss_pred -HHHHHHHHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 243 -QEAVEVLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 243 -~~A~~~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
....++++.+.+.++....+ -.. ...+++.++++++ ..++||.++=-+.+.+++.++.+.| +|.+.+
T Consensus 150 ~~~~~e~~~~~~~~G~~~i~~-~~~~~~g~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~v 223 (253)
T 1thf_D 150 GILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALA 223 (253)
T ss_dssp EEEHHHHHHHHHHTTCSEEEE-EETTTTTSCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEE-EeccCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHHcC-ChHHHH
Confidence 12345556666666542233 111 1235777777763 5689999988899999999999876 577765
Q ss_pred CCCCC-chHHHHHHHHHHHHcCCcEE
Q 014886 316 KLAKV-GVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 316 k~~k~-Gi~~~l~i~~~A~~~gi~~~ 340 (416)
=-.-. +-....++.+..++.|+++-
T Consensus 224 Gsal~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 224 ASVFHFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp SHHHHTTCSCHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCCHHHHHHHHHHcCCccc
Confidence 21111 10012345556677787654
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=86.18 E-value=6.9 Score=38.02 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-C---------ChhHHHHHHHHHHHh---C---CCcEEEEeCCCCCCHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAV---H---PDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG-~---------~~~~d~~~v~avr~~---g---~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
+++++.+.++.+ ..+...|-|.++ + +++.-.+.+++|+++ . .+..+.|=-.-.|+.++..+++
T Consensus 162 ~~~dy~~~~~~~-~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia 240 (367)
T 3zwt_A 162 AAEDYAEGVRVL-GPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp HHHHHHHHHHHH-GGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHH
Confidence 467777666654 345788999887 1 122233456666653 1 3567777777778888889999
Q ss_pred HHHHhCCCCcee-----eecC-----CCCC-------------CHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHH
Q 014886 250 EKLYEMGVTPVL-----FEQP-----VHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 250 ~~L~~~~l~~~~-----iEeP-----~~~~-------------d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~ 304 (416)
+.+++.++.-.. +..+ .... .++..++++ +.. .+||.+.=-+.+.+|+.++
T Consensus 241 ~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~----~~v~~~ipvI~~GGI~s~~da~~~ 316 (367)
T 3zwt_A 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMY----ALTQGRVPIIGVGGVSSGQDALEK 316 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHH----HHTTTCSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHH----HHcCCCceEEEECCCCCHHHHHHH
Confidence 999987754111 1221 0000 122334443 355 7999999899999999999
Q ss_pred HHcCCCCEEEeC
Q 014886 305 VKGNLADVINIK 316 (416)
Q Consensus 305 i~~~a~d~v~~k 316 (416)
++.| +|.|++=
T Consensus 317 l~~G-Ad~V~vg 327 (367)
T 3zwt_A 317 IRAG-ASLVQLY 327 (367)
T ss_dssp HHHT-CSEEEES
T ss_pred HHcC-CCEEEEC
Confidence 9988 5999873
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=85.69 E-value=19 Score=33.72 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 256 (416)
.+.+.-..+++++++.|-.-+-+-+. .+.+.-.+-|++|+++ + +-+++++... -++.++-.+.++...+.+
T Consensus 123 ~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~-~Lt~eei~~A~~ia~eaG 201 (288)
T 3oa3_A 123 YSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETS-QLTADEIIAGCVLSSLAG 201 (288)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGG-GCCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECC-CCCHHHHHHHHHHHHHcC
Confidence 34555577889999999999996664 3444555567788876 3 3367777765 578887777677677788
Q ss_pred CCceeeecCCC----C---CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHH
Q 014886 257 VTPVLFEQPVH----R---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 329 (416)
Q Consensus 257 l~~~~iEeP~~----~---~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~ 329 (416)
.. ||=-..- - +|.+-++++.+.. ...++|-.-=-+.+.+++..+++.|+- ++|.+...++.
T Consensus 202 AD--fVKTSTGf~~~GAT~edv~lmr~~v~~~--g~~v~VKAAGGIrt~edAl~mi~aGA~--------RiGtS~g~~I~ 269 (288)
T 3oa3_A 202 AD--YVKTSTGFNGPGASIENVSLMSAVCDSL--QSETRVKASGGIRTIEDCVKMVRAGAE--------RLGASAGVKIV 269 (288)
T ss_dssp CS--EEECCCSSSSCCCCHHHHHHHHHHHHHS--SSCCEEEEESSCCSHHHHHHHHHTTCS--------EEEESCHHHHH
T ss_pred CC--EEEcCCCCCCCCCCHHHHHHHHHHHHHh--CCCceEEEeCCCCCHHHHHHHHHcCCc--------eeehhhHHHHH
Confidence 64 8876631 1 2444444443100 134555433347899999999999862 55766677788
Q ss_pred HHHHHcCCcE
Q 014886 330 EVVRASGLNL 339 (416)
Q Consensus 330 ~~A~~~gi~~ 339 (416)
+-++..|+..
T Consensus 270 ~~~~~~~~~~ 279 (288)
T 3oa3_A 270 NETRLGNRQV 279 (288)
T ss_dssp HHHTC-----
T ss_pred HHHHhcCCCC
Confidence 8777777654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=9.5 Score=37.69 Aligned_cols=134 Identities=7% Similarity=0.038 Sum_probs=84.0
Q ss_pred eeeEeecCCC-----HHHHHHHHHHHHHcCCCEEEEecC-C---------ChhHHHHHHHHHHHhC--------------
Q 014886 177 TTDITIPIVS-----PAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVH-------------- 227 (416)
Q Consensus 177 ~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~KiKvG-~---------~~~~d~~~v~avr~~g-------------- 227 (416)
++..+++... ++++.+.++.+.+. ...|-|.++ + +.+.-.+.+++|++..
T Consensus 183 ~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~ 261 (415)
T 3i65_A 183 IVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFL 261 (415)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred eEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 3445555443 56676666655433 778888887 1 3344445666776641
Q ss_pred -----CCcE-EEEeCCCCCCHHHHHHHHHHHHhCCCCce-----eeecCC----------------CCCCHHHHHHhHHh
Q 014886 228 -----PDSS-FILDANEGYKPQEAVEVLEKLYEMGVTPV-----LFEQPV----------------HRDDWEGLGHVSHI 280 (416)
Q Consensus 228 -----~~~~-L~vDaN~~w~~~~A~~~~~~L~~~~l~~~-----~iEeP~----------------~~~d~~~~~~l~~~ 280 (416)
.+.. +.|=-.-.|+.++..++++.+++.++.-. ..++.- .+-.++-+++++
T Consensus 262 ~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~-- 339 (415)
T 3i65_A 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMY-- 339 (415)
T ss_dssp CCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHH--
T ss_pred ccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHH--
Confidence 2455 66666677888888899999988765311 112110 000012233443
Q ss_pred hhccC--CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 281 AKDKF--GVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 281 ~r~~~--~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+.. .+||...=-+.+.+|+.+++..|+ |.||+=
T Consensus 340 --~~v~~~iPIIg~GGI~s~eDa~e~l~aGA-d~VqIg 374 (415)
T 3i65_A 340 --NYTNKQIPIIASGGIFSGLDALEKIEAGA-SVCQLY 374 (415)
T ss_dssp --HHTTTCSCEEECSSCCSHHHHHHHHHHTE-EEEEES
T ss_pred --HHhCCCCCEEEECCCCCHHHHHHHHHcCC-CEEEEc
Confidence 344 699999999999999999999984 999873
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.10 E-value=3.3 Score=37.90 Aligned_cols=150 Identities=12% Similarity=0.019 Sum_probs=71.8
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEEEecCCC-hhH--HHHHHHHHHHh-C--C-CcEEEEeCC---C-------CCCH-
Q 014886 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKE--DIEVLRAIRAV-H--P-DSSFILDAN---E-------GYKP- 242 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~-~~~--d~~~v~avr~~-g--~-~~~L~vDaN---~-------~w~~- 242 (416)
..+..+++++ +++.+.|... +-+|.. .+. +.+.++.+.+. + . .+.+.+|+. + +|+.
T Consensus 80 ~ggi~~~~~i----~~~~~~Gad~--v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~ 153 (266)
T 2w6r_A 80 SGGAGKMEHF----LEAFLAGADK--ALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKN 153 (266)
T ss_dssp ESCCCSTHHH----HHHHHHTCSE--EECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEE
T ss_pred ECCCCCHHHH----HHHHHcCCcH--hhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCcee
Confidence 3334455553 3344567654 455532 223 55666666554 4 2 345778873 2 3421
Q ss_pred --HHHHHHHHHHHhCCCCceeeec-----CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 243 --QEAVEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 243 --~~A~~~~~~L~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
....++++.+++.+....++-. .....|++.++++++ .+++||.+.=-+.+.+++.++++.| +|.+.+
T Consensus 154 ~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~ed~~~~~~~G-adgv~v 228 (266)
T 2w6r_A 154 TGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALA 228 (266)
T ss_dssp EEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred cchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHcC-CHHHHc
Confidence 1223455666666654334411 111125677777753 6789999988899999999999877 577766
Q ss_pred CCCCCc-hHHHHHHHHHHHHcCCcEEE
Q 014886 316 KLAKVG-VLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 316 k~~k~G-i~~~l~i~~~A~~~gi~~~~ 341 (416)
=-.-.+ -....++.++.++.|+++-.
T Consensus 229 gsal~~~~~~~~~~~~~l~~~g~~~~~ 255 (266)
T 2w6r_A 229 ASVFHFREIDMRELKEYLKKHGVNVRL 255 (266)
T ss_dssp STTTC----------------------
T ss_pred cHHHHcCCCCHHHHHHHHHHCCCcccc
Confidence 544443 22344556667777776643
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.88 E-value=13 Score=37.45 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec---
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--- 264 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe--- 264 (416)
+..+.++.+.+.|...+-|... .....-.+.|+.+++..|++.+.+ ...-+.++| +.+.+.+.. +|==
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~--g~v~t~e~a----~~l~~aGaD--~I~vg~g 300 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG--GNIATAEAA----KALAEAGAD--AVKVGIG 300 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE--EEECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEE--eeeCcHHHH----HHHHHcCCC--EEEECCC
Confidence 3456677788899999988876 334566788999999888877776 113456665 445556654 3320
Q ss_pred CC-----------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 265 PV-----------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 265 P~-----------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
|- ...++..+.++.+.+ +..++||.++=-+.+..|+.+++..|+ |.+++=
T Consensus 301 ~Gs~~~t~~~~g~g~p~~~~l~~v~~~~-~~~~iPVIa~GGI~~~~di~kal~~GA-d~V~vG 361 (490)
T 4avf_A 301 PGSICTTRIVAGVGVPQISAIANVAAAL-EGTGVPLIADGGIRFSGDLAKAMVAGA-YCVMMG 361 (490)
T ss_dssp CSTTCHHHHHTCBCCCHHHHHHHHHHHH-TTTTCCEEEESCCCSHHHHHHHHHHTC-SEEEEC
T ss_pred CCcCCCccccCCCCccHHHHHHHHHHHh-ccCCCcEEEeCCCCCHHHHHHHHHcCC-Ceeeec
Confidence 11 122455556665432 245899999999999999999999984 888764
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=3.5 Score=37.16 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=76.4
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCC----------CCCCH--H
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN----------EGYKP--Q 243 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN----------~~w~~--~ 243 (416)
|+....+..++++ ++.+++.|...+ -+|...-.+.+++..+++. +..+.+.+|+. .+|.. .
T Consensus 76 pv~v~ggi~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~ 149 (244)
T 2y88_A 76 QVELSGGIRDDES----LAAALATGCARV--NVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG 149 (244)
T ss_dssp EEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEE
T ss_pred cEEEECCCCCHHH----HHHHHHcCCCEE--EECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCC
Confidence 3333444556654 455667787655 4442222334456655554 55566778875 14420 0
Q ss_pred HHHHHHHHHHhCCCCceee---e--cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc---CCCCEEEe
Q 014886 244 EAVEVLEKLYEMGVTPVLF---E--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG---NLADVINI 315 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~i---E--eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~---~a~d~v~~ 315 (416)
+..++++.+++.++....+ . +-....+++.++++++ ..++||.++=-+.+.+++.++++. | +|.+.+
T Consensus 150 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~~~~G-ad~v~v 224 (244)
T 2y88_A 150 DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVAD----RTDAPVIASGGVSSLDDLRAIATLTHRG-VEGAIV 224 (244)
T ss_dssp EHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHT----TCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHhhccCC-CCEEEE
Confidence 3455666677766642232 1 1111236777777763 578999999889999999999987 5 677765
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=83.57 E-value=24 Score=31.55 Aligned_cols=140 Identities=12% Similarity=0.183 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
..++++..+.++.+++.|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...+ +.+.. ++=
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~l~vgaGt--vl~~d~~~~A~----~aGAd--~v~ 94 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPDFLIAAGT--VLTAEQVVLAK----SSGAD--FVV 94 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEES--CCSHHHHHHHH----HHTCS--EEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccC--chHHHHHHHHHHhCcCcEEeeCc--EeeHHHHHHHH----HCCCC--EEE
Confidence 4577778888899999999999998643 24566788888888876555553 55666653322 23432 663
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHc-CCcEEE
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLMI 341 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~-gi~~~~ 341 (416)
-| ..|.+-.+..+ +.++|+..| +.|+.++.++.+.| +|++.+=+.. .|..+.++ ++.... ++++++
T Consensus 95 ~p--~~d~~v~~~ar-----~~g~~~i~G--v~t~~e~~~A~~~G-ad~vk~Fpa~~~gG~~~lk--~l~~~~~~ipvva 162 (224)
T 1vhc_A 95 TP--GLNPKIVKLCQ-----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIK--ALLGPYAQLQIMP 162 (224)
T ss_dssp CS--SCCHHHHHHHH-----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHH--HHHTTTTTCEEEE
T ss_pred EC--CCCHHHHHHHH-----HhCCCEEec--cCCHHHHHHHHHCC-CCEEEEeeCccccCHHHHH--HHHhhCCCCeEEE
Confidence 34 34443333322 368888777 88999999999888 6999886643 34333332 334445 788877
Q ss_pred ccCC
Q 014886 342 GGMV 345 (416)
Q Consensus 342 ~~~~ 345 (416)
-+-+
T Consensus 163 iGGI 166 (224)
T 1vhc_A 163 TGGI 166 (224)
T ss_dssp BSSC
T ss_pred ECCc
Confidence 5544
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=83.46 E-value=5 Score=36.14 Aligned_cols=128 Identities=19% Similarity=0.208 Sum_probs=76.2
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCC------CCCCH--HHHHH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN------EGYKP--QEAVE 247 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN------~~w~~--~~A~~ 247 (416)
|+....+..++++ ++.+++.|...+ -+|...-.+.+++..+++. +..+.+.+|+. .+|.. .+..+
T Consensus 77 pv~v~ggI~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e 150 (244)
T 1vzw_A 77 KVELSGGIRDDDT----LAAALATGCTRV--NLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYE 150 (244)
T ss_dssp EEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHH
T ss_pred cEEEECCcCCHHH----HHHHHHcCCCEE--EECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHH
Confidence 3333444556654 455667787654 4553222334456555554 55566788875 34521 03345
Q ss_pred HHHHHHhCCCCceeeec--C---CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc---CCCCEEEe
Q 014886 248 VLEKLYEMGVTPVLFEQ--P---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG---NLADVINI 315 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEe--P---~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~---~a~d~v~~ 315 (416)
+++.+++.++....+=. | ....+++.++++++ ..++||.++=-+.+.+++.++++. | +|.+.+
T Consensus 151 ~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~----~~~ipvia~GGI~~~~d~~~~~~~~~~G-adgv~v 221 (244)
T 1vzw_A 151 TLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA----ATDRPVVASGGVSSLDDLRAIAGLVPAG-VEGAIV 221 (244)
T ss_dssp HHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH----TCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEE
T ss_pred HHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHhhccCC-Cceeee
Confidence 56666666654333321 1 11236777787764 568999999899999999999987 5 677655
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=83.12 E-value=12 Score=34.64 Aligned_cols=90 Identities=19% Similarity=0.099 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCCceee----ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCch
Q 014886 247 EVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 322 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi 322 (416)
++++..++.|.. +| |+..-...++.++.+++ .+++||-...-+.+..++.++...| +|.+.+....+.-
T Consensus 83 ~~A~~y~~~GA~--~IsVltd~~~f~Gs~~~L~~ir~----~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~VlLi~a~L~~ 155 (272)
T 3tsm_A 83 ALAKAYEEGGAA--CLSVLTDTPSFQGAPEFLTAARQ----ACSLPALRKDFLFDPYQVYEARSWG-ADCILIIMASVDD 155 (272)
T ss_dssp HHHHHHHHTTCS--EEEEECCSTTTCCCHHHHHHHHH----TSSSCEEEESCCCSTHHHHHHHHTT-CSEEEEETTTSCH
T ss_pred HHHHHHHHCCCC--EEEEeccccccCCCHHHHHHHHH----hcCCCEEECCccCCHHHHHHHHHcC-CCEEEEcccccCH
Confidence 345555665532 33 44444456666776653 6889999888888899999988888 5999888877665
Q ss_pred HHHHHHHHHHHHcCCcEEEcc
Q 014886 323 LGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 323 ~~~l~i~~~A~~~gi~~~~~~ 343 (416)
....++...|+..|+.+++-.
T Consensus 156 ~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 567788999999999987544
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=82.27 E-value=26 Score=34.14 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee------
Q 014886 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------ 262 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i------ 262 (416)
..+.++.+.+.|+..+-+..+ .+++.-.+.++.+|+..|++.+.+- +..+.++| +.+.+.++....+
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~--~v~~~~~a----~~a~~~Gad~I~vg~~~G~ 227 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAG--NIVTKEAA----LDLISVGADCLKVGIGPGS 227 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEE--EECSHHHH----HHHHTTTCSEEEECSSCST
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEc--CCCcHHHH----HHHHhcCCCEEEECCCCCc
Confidence 345566778899999888554 3445667788999998767888871 22345554 4455666542222
Q ss_pred -----e-cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 -----E-QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 -----E-eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ ......+++.+..+.+.. ...++||.++=-+.+..|+.+++..| +|.+++
T Consensus 228 ~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipVia~GGI~~~~d~~~ala~G-Ad~V~i 284 (404)
T 1eep_A 228 ICTTRIVAGVGVPQITAICDVYEAC-NNTNICIIADGGIRFSGDVVKAIAAG-ADSVMI 284 (404)
T ss_dssp TSHHHHHHCCCCCHHHHHHHHHHHH-TTSSCEEEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred CcCccccCCCCcchHHHHHHHHHHH-hhcCceEEEECCCCCHHHHHHHHHcC-CCHHhh
Confidence 0 111111355555555321 24689999999999999999999998 698877
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=82.04 E-value=15 Score=37.15 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec---C
Q 014886 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---P 265 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe---P 265 (416)
..+.++.+.+.|...+-|... ...+.-.+.|+.+|+..|+..+.+ ...-+.++|.+ +.+.+.. +|== |
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~--g~v~t~e~a~~----l~~aGaD--~I~Vg~g~ 303 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG--GNVATAEGARA----LIEAGVS--AVKVGIGP 303 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE--EEECSHHHHHH----HHHHTCS--EEEECSSC
T ss_pred hHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEE--cccCcHHHHHH----HHHhCCC--EEEECCCC
Confidence 356677788899999988876 334566788999999888877766 22345666544 4445553 3321 1
Q ss_pred ---CC--------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 266 ---VH--------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 266 ---~~--------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+. ..++..+.++.+.. +..++||.++=-+.+..|+.+++..| +|.+++=-.
T Consensus 304 Gs~~~tr~~~g~g~p~~~~i~~v~~~~-~~~~iPVIa~GGI~~~~di~kala~G-Ad~V~iGs~ 365 (496)
T 4fxs_A 304 GSICTTRIVTGVGVPQITAIADAAGVA-NEYGIPVIADGGIRFSGDISKAIAAG-ASCVMVGSM 365 (496)
T ss_dssp CTTBCHHHHHCCCCCHHHHHHHHHHHH-GGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTT
T ss_pred CcCcccccccCCCccHHHHHHHHHHHh-ccCCCeEEEeCCCCCHHHHHHHHHcC-CCeEEecHH
Confidence 11 12345555555432 24589999999999999999999998 588887433
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.79 E-value=9 Score=36.00 Aligned_cols=94 Identities=12% Similarity=0.218 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCC--CC------CCHHH-HHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPV--HR------DDWEG-LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~--~~------~d~~~-~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
..++.++.+++++.|++.|+. +||.=. .+ .|.+. ++.+ .+..+++++.- +.+..++.++++.|
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~l--~~~~~~i~~a~~aG 96 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLD--YIEVGSFVSPKWVPQMAGSAEVFAGI----RQRPGVTYAAL--APNLKGFEAALESG 96 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCS--EEEEEECSCTTTCGGGTTHHHHHHHS----CCCTTSEEEEE--CCSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcCcC--EEEECCCcCccccccccCHHHHHHHh----hhcCCCEEEEE--eCCHHHHHHHHhCC
Confidence 356899999999999999985 899732 11 12222 2222 23457788652 25889999999987
Q ss_pred CCCEEEe-CCCC---------Cc----hHHHHHHHHHHHHcCCcEE
Q 014886 309 LADVINI-KLAK---------VG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 309 a~d~v~~-k~~k---------~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.+.+ +.+. .. +..+.+++++|+++|+.+.
T Consensus 97 -~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~ 141 (302)
T 2ftp_A 97 -VKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR 141 (302)
T ss_dssp -CCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 688876 3321 11 2346788999999999984
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=81.77 E-value=9.7 Score=35.02 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCEEEEecC--------CChhHHHHHHHHHHHh----CCCc--EEEEeCC-CCCC-----HHHHHHHHH
Q 014886 191 AELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIRAV----HPDS--SFILDAN-EGYK-----PQEAVEVLE 250 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG--------~~~~~d~~~v~avr~~----g~~~--~L~vDaN-~~w~-----~~~A~~~~~ 250 (416)
.+.++++.+.|...+||.=+ .+.++=+++|++++++ +.++ .=+.|+. ++.+ .+++++-++
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~ 175 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIK 175 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHH
Confidence 67778888899999999854 1345678899999887 6664 4467873 2332 789999999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
.+++.|....|+|-+ + +.+..+++++ +.++|+-
T Consensus 176 a~~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n 208 (255)
T 2qiw_A 176 LMEQAGARSVYPVGL-S--TAEQVERLVD----AVSVPVN 208 (255)
T ss_dssp HHHHHTCSEEEECCC-C--SHHHHHHHHT----TCSSCBE
T ss_pred HHHHcCCcEEEEcCC-C--CHHHHHHHHH----hCCCCEE
Confidence 999988766789875 2 2455677764 4556654
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=81.32 E-value=7.8 Score=37.21 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec------CC--------CCCCHHHHHHhHHhhhccCCCeEEe--CCCCCCHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ------PV--------HRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDV 301 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe------P~--------~~~d~~~~~~l~~~~r~~~~iPIa~--dEs~~~~~d~ 301 (416)
..++.++-+++++.|.+.|+. .||= |. ..++++.++++++ ...+++|.. --...+..++
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd--~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~---~~~~~~i~~l~~p~~~~~~~i 99 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVD--SIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAG---EISHAQIATLLLPGIGSVHDL 99 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHT---TCSSSEEEEEECBTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCcccCCCCCHHHHHHHHHh---hCCCCEEEEEecCCcccHHHH
Confidence 457899999999999999985 9998 43 2455666666653 224567653 1123357788
Q ss_pred HHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEcc
Q 014886 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 302 ~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~ 343 (416)
+++.+.| +|.+.+-....=...+.+++..|+++|+.+....
T Consensus 100 ~~a~~aG-vd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 140 (345)
T 1nvm_A 100 KNAYQAG-ARVVRVATHCTEADVSKQHIEYARNLGMDTVGFL 140 (345)
T ss_dssp HHHHHHT-CCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEE
T ss_pred HHHHhCC-cCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEE
Confidence 8888887 6887764322113467788899999999987664
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=80.83 E-value=29 Score=30.53 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=89.8
Q ss_pred eEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
...+...++++..+.++.+.+.|.+.+-+.... ....+.++.+++ ++..+..+ .-.+.+++... -+.+..
T Consensus 16 i~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~--~~~~~~i~~~~~--~~~~~gag--~vl~~d~~~~A----~~~GAd 85 (207)
T 2yw3_A 16 LPLLTVRGGEDLLGLARVLEEEGVGALEITLRT--EKGLEALKALRK--SGLLLGAG--TVRSPKEAEAA----LEAGAA 85 (207)
T ss_dssp EEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS--THHHHHHHHHTT--SSCEEEEE--SCCSHHHHHHH----HHHTCS
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hHHHHHHHHHhC--CCCEEEeC--eEeeHHHHHHH----HHcCCC
Confidence 344445566677788888889999999988653 244567777777 65554444 45566554222 223433
Q ss_pred ceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHc-C
Q 014886 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-G 336 (416)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~-g 336 (416)
|+=-| ..|.+-.+..+ ..++|+..| +.|+.++.+..+.| +|++.+-+.. .|..+.++ .+.... +
T Consensus 86 --~v~~~--~~d~~v~~~~~-----~~g~~~i~G--~~t~~e~~~A~~~G-ad~v~~fpa~~~gG~~~lk--~l~~~~~~ 151 (207)
T 2yw3_A 86 --FLVSP--GLLEEVAALAQ-----ARGVPYLPG--VLTPTEVERALALG-LSALKFFPAEPFQGVRVLR--AYAEVFPE 151 (207)
T ss_dssp --EEEES--SCCHHHHHHHH-----HHTCCEEEE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHH--HHHHHCTT
T ss_pred --EEEcC--CCCHHHHHHHH-----HhCCCEEec--CCCHHHHHHHHHCC-CCEEEEecCccccCHHHHH--HHHhhCCC
Confidence 67656 34444333322 457888876 78999999998887 6999886644 33333333 445556 7
Q ss_pred CcEEEccCC
Q 014886 337 LNLMIGGMV 345 (416)
Q Consensus 337 i~~~~~~~~ 345 (416)
++++.-+-+
T Consensus 152 ipvvaiGGI 160 (207)
T 2yw3_A 152 VRFLPTGGI 160 (207)
T ss_dssp CEEEEBSSC
T ss_pred CcEEEeCCC
Confidence 998875544
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.74 E-value=31 Score=30.88 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-------
Q 014886 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------- 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG--~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i------- 262 (416)
++++.+++.|-..+=+-.. .+++...+.++.+++. ++.+++|.+ +.+++.+ +.+.|.. +|
T Consensus 92 ~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~---t~eea~~----a~~~Gad--~Ig~~~~g~ 160 (229)
T 3q58_A 92 QDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH--GLLAMADCS---TVNEGIS----CHQKGIE--FIGTTLSGY 160 (229)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEEEECS---SHHHHHH----HHHTTCS--EEECTTTTS
T ss_pred HHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC--CCEEEEecC---CHHHHHH----HHhCCCC--EEEecCccC
Confidence 3456677889998866554 2445556677777774 678999886 5666644 4455543 44
Q ss_pred e---cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 E---eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ .+. ..+++.++++++ . ++|+.+.=-+.+.+++.++++.| +|.+.+
T Consensus 161 t~~~~~~-~~~~~li~~l~~----~-~ipvIA~GGI~t~~d~~~~~~~G-adgV~V 209 (229)
T 3q58_A 161 TGPITPV-EPDLAMVTQLSH----A-GCRVIAEGRYNTPALAANAIEHG-AWAVTV 209 (229)
T ss_dssp SSSCCCS-SCCHHHHHHHHT----T-TCCEEEESSCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCCCcCC-CCCHHHHHHHHH----c-CCCEEEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 1 122 236777777753 4 89999988899999999999997 688766
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=28 Score=30.31 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=87.4
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 256 (416)
++..++...++++..+.++.+.+.|.+.+-+.... ....+.++.+++..+ ..+++-+..-.+.++ ++.+.+.+
T Consensus 8 ~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~--~~~~~~i~~i~~~~~-~~l~vg~g~~~~~~~----i~~a~~~G 80 (212)
T 2v82_A 8 PLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS--PQWEQSIPAIVDAYG-DKALIGAGTVLKPEQ----VDALARMG 80 (212)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS--TTHHHHHHHHHHHHT-TTSEEEEECCCSHHH----HHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCC-CCeEEEeccccCHHH----HHHHHHcC
Confidence 34455666788889999999999999999886542 233566677766532 345553333345543 34444556
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcC
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 336 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~g 336 (416)
.. ++=-| ..+.+-.+.. +..+.++..+ +.++.++.+..+.| +|++.+.++. ....-.+..+++...
T Consensus 81 ad--~V~~~--~~~~~~~~~~-----~~~g~~~~~g--~~t~~e~~~a~~~G-~d~v~v~~t~--~~g~~~~~~l~~~~~ 146 (212)
T 2v82_A 81 CQ--LIVTP--NIHSEVIRRA-----VGYGMTVCPG--CATATEAFTALEAG-AQALKIFPSS--AFGPQYIKALKAVLP 146 (212)
T ss_dssp CC--EEECS--SCCHHHHHHH-----HHTTCEEECE--ECSHHHHHHHHHTT-CSEEEETTHH--HHCHHHHHHHHTTSC
T ss_pred CC--EEEeC--CCCHHHHHHH-----HHcCCCEEee--cCCHHHHHHHHHCC-CCEEEEecCC--CCCHHHHHHHHHhcc
Confidence 53 55423 2333333222 2457776666 78999998888776 7998774421 111233344455554
Q ss_pred --CcEEEccCC
Q 014886 337 --LNLMIGGMV 345 (416)
Q Consensus 337 --i~~~~~~~~ 345 (416)
++++..+.+
T Consensus 147 ~~ipvia~GGI 157 (212)
T 2v82_A 147 SDIAVFAVGGV 157 (212)
T ss_dssp TTCEEEEESSC
T ss_pred CCCeEEEeCCC
Confidence 888775544
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=80.45 E-value=8.7 Score=38.97 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCceeee---c
Q 014886 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 264 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iE---e 264 (416)
..+.++.+++.|+..+-+..+ .+.....+.++++++..|++.+.+ +. -+.++|.+ +.+.|+. +|- .
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a~~----l~~aGad--~I~vg~~ 326 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQAKN----LIDAGVD--GLRVGMG 326 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHH----HHHHTCS--EEEECSS
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHHHH----HHHcCCC--EEEECCC
Confidence 456777788899999998766 334556788999999877777775 33 45666544 4444543 330 0
Q ss_pred C--------CCCC---CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 265 P--------VHRD---DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 265 P--------~~~~---d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
| .... ....+..+.+ .++..++||.++=-+.+..|+.+++..| +|.+++=-
T Consensus 327 ~G~~~~t~~~~~~g~~~~~~~~~~~~-~~~~~~ipVia~GGI~~~~di~kala~G-Ad~V~iG~ 388 (514)
T 1jcn_A 327 CGSICITQEVMACGRPQGTAVYKVAE-YARRFGVPIIADGGIQTVGHVVKALALG-ASTVMMGS 388 (514)
T ss_dssp CSCCBTTBCCCSCCCCHHHHHHHHHH-HHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEEST
T ss_pred CCcccccccccCCCccchhHHHHHHH-HHhhCCCCEEEECCCCCHHHHHHHHHcC-CCeeeECH
Confidence 1 0000 1112222222 2235689999999999999999999998 68887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 416 | ||||
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 5e-30 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 9e-29 | |
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 1e-26 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 6e-26 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 7e-24 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 3e-23 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 4e-21 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 6e-20 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 4e-19 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 1e-18 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 4e-18 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 9e-18 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 2e-16 | |
| d1muca2 | 127 | d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (ci | 4e-16 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 9e-16 | |
| d1jpma2 | 125 | d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacill | 1e-15 | |
| d1wufa2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 7e-15 | |
| d2chra2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {A | 2e-14 | |
| d1wuea2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 2e-14 | |
| d1r0ma2 | 127 | d.54.1.1 (A:6-132) N-acylamino acid racemase {Dein | 5e-14 | |
| d1jpdx2 | 116 | d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Esche | 4e-13 | |
| d2gdqa2 | 115 | d.54.1.1 (A:4-118) Hypothetical protein YitF {Baci | 8e-13 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 1e-12 | |
| d1nu5a2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {P | 2e-12 | |
| d2mnra2 | 130 | d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas | 2e-12 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 3e-12 | |
| d1sjda2 | 125 | d.54.1.1 (A:1-125) N-acylamino acid racemase {Amyc | 3e-12 | |
| d1tzza2 | 140 | d.54.1.1 (A:1006-1145) Hypothetical protein Bll673 | 5e-12 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 1e-11 | |
| d2gl5a1 | 278 | c.1.11.2 (A:123-400) Putative dehydratase protein | 2e-10 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 3e-10 | |
| d1bqga2 | 132 | d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseud | 3e-10 | |
| d1yeya2 | 139 | d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas c | 8e-10 | |
| d1jdfa2 | 133 | d.54.1.1 (A:5-137) D-glucarate dehydratase {Escher | 2e-09 | |
| d2gl5a2 | 122 | d.54.1.1 (A:1-122) Putative dehydratase protein ST | 2e-09 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 3e-09 | |
| d1rvka2 | 126 | d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {A | 2e-07 |
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 5e-30
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 234
T+ T T+ I +P + A AS + G LK+K+ + E + AIR PD++ I+
Sbjct: 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVPDATLIV 62
Query: 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 294
DANE ++ + + L ++ + EQP+ D L + H + + ADES
Sbjct: 63 DANESWRAEGLAARCQLLADL--GVAMLEQPLPAQDDAALENFIH------PLPICADES 114
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353
C + ++K + +++NIKL K G+ AL + RA G +LM+G M+ T A+
Sbjct: 115 CHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 172
Query: 354 AGHLSAGLGCFKFIDLDTPLLLSEDP 379
A L F DLD P L+ D
Sbjct: 173 ALPLVPQ---VSFADLDGPTWLAVDV 195
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 110 bits (275), Expect = 9e-29
Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSS 231
+T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR V
Sbjct: 3 DTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVK 62
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ + A
Sbjct: 63 LRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTP----IMA 118
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES + ++++ AD+INIKL K G + GA +I + A G+ M+G M+ET+L
Sbjct: 119 DESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ A H +A D D PL+L D G SG+ G G
Sbjct: 179 ITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 228
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 1e-26
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 11/196 (5%)
Query: 187 PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245
P + + G K++VG D V+ + PD LDAN + P +
Sbjct: 15 PDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKG 72
Query: 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305
+ + + + S + G+++A DES R D
Sbjct: 73 QQFAKYVNPDYRDRI--AFLEEPCKTR---DDSRAFARETGIAIAWDESLREPDFAFVAE 127
Query: 306 KGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
+G + IK + E ++ A GL +I +E+ L + ++A L
Sbjct: 128 EG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPD 185
Query: 365 KFIDLDTPLLLSEDPV 380
LDT L+ V
Sbjct: 186 TIPGLDTLDLMQAQQV 201
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 6e-26
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 7/231 (3%)
Query: 183 PIVSPAEAAELASK-YRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 240
++P LA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 44 EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW 103
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
EA+++ + L E P + V + G+ A +
Sbjct: 104 SLNEAIKIGKYLKGS---LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ 160
Query: 301 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360
+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 161 MGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAA 220
Query: 361 L-GCFKFIDLDTPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIA 409
G ID + +E+ G + + G G + D +
Sbjct: 221 APGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVM 271
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 97.4 bits (242), Expect = 7e-24
Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 23/220 (10%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA--------------V 226
+ A ++ K+G ++ +E ++ +R
Sbjct: 16 DRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIF 75
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQPVHRDDW----EGLGHVSHIA 281
H D + A + + ++ L E + E P+ +D E + +
Sbjct: 76 HIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAEL 135
Query: 282 KDK-FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339
+ + ADE C +++DVK ++ IK +G V + I +A+G+
Sbjct: 136 DGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGA 195
Query: 340 MIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
GG ET + ++ G + + + + E
Sbjct: 196 YCGGTCNETNRSAEVTTNIGMACGA-RQVLAKPGMGVDEG 234
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 95.4 bits (237), Expect = 3e-23
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 23/207 (11%)
Query: 194 ASKYRKQGFTTLKLKVGK---NLKEDIEVLR-AIRAV----------HPDSSFILDANEG 239
++ K+G L+E + L I ++ H D +
Sbjct: 29 VDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFD 88
Query: 240 YKPQEAVEVLEKLYEM-GVTPVLFEQPV----HRDDWEGLGHV-SHIAKDKFGVSVAADE 293
P E + L + P+ E PV D L + + + GV + ADE
Sbjct: 89 MDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADE 148
Query: 294 SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 351
C + D+ ++ IK +G + ++ + G+ GG ET ++
Sbjct: 149 WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISA 208
Query: 352 GFAGHLSAGLGCFKFIDLDTPLLLSED 378
H++ + + + E
Sbjct: 209 RTCVHVALAARP-MRMLIKPGMGFDEG 234
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 89.6 bits (221), Expect = 4e-21
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
+I ++I + + +L ++Y QG+ +KLK+ N +DI+ + A+R P S
Sbjct: 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRKSFPKLSL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+ DAN Y ++ + + EQP D+ + K + + D
Sbjct: 61 MADANSAYNREDFL---LLKELDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICL----D 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAM 351
E+ RS+ DV++ IN+KLA+V G+ AL+I E + + + GGM+E +
Sbjct: 114 ENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGR 173
Query: 352 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
L+A D+ + +ED V +E++ K G G L +
Sbjct: 174 AHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLK 232
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 86.2 bits (212), Expect = 6e-20
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR-AVHP 228
V +++ T+ A AE + KLK+G N +++D++ + I+ +
Sbjct: 2 VRDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGD 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+S +D N+ + +A+ + L + L EQP+ R + +
Sbjct: 62 SASVRVDVNQYWDESQAIRACQVLGDN--GIDLIEQPISRINR----GGQVRLNQRTPAP 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKL-AKVGVLGALEIIEVVRASGLNLMIGGMVET 347
+ ADES S++D + A + +K+ G L ++ A+G+ L G M+E
Sbjct: 116 IMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEG 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ + H L + +L PLLL+E+ V + + G G L
Sbjct: 176 SIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQ 235
Query: 407 NIA 409
+A
Sbjct: 236 RLA 238
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 83.9 bits (206), Expect = 4e-19
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 228
+ + I T+ ++ K+K+G ++ ++D+ + A+ ++
Sbjct: 2 LRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGS 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ +D N+ + Q A + L EQPV R++ D V+
Sbjct: 62 KAYLRVDVNQAWDEQVASVY--IPELEALGVELIEQPVGRENT----QALRRLSDNNRVA 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVET 347
+ ADES +L + + DV ++KL +G + +I V ASG+ G M+++
Sbjct: 116 IMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDS 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ A L + + F +L P +L++ + E+ + GHG L D
Sbjct: 176 TIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDED 235
Query: 407 NIA 409
+
Sbjct: 236 KVR 238
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 82.7 bits (203), Expect = 1e-18
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
+ +++ I + +A +L ++ +QG+ +KLK+ D++ +RA R PD
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRATREAFPDIRL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+DAN Y + EQP+ DD + + D
Sbjct: 61 TVDANSAYTLA---DAGRLRQLDEYDLTYIEQPLAWDDL----VDHAELARRIRTPLCLD 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAM 351
ES S D +K + VIN+K+A+VG + + +V ++ G + GGM+E+ +
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 352 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
HLS D D + + E + G G L + +A
Sbjct: 174 AHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 80.8 bits (198), Expect = 4e-18
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
I I++ I + + ++G+ +KLK+ D+E + IR P+
Sbjct: 3 RKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVALIRQHFPNLPL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
++DAN Y + ++ + + EQP DD+ + + + D
Sbjct: 61 MVDANSAYTLADLPQLQRLDHYQ---LAMIEQPFAADDF----LDHAQLQRELKTRICLD 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351
E+ RSL D + + IN+K+ + G+ AL+I + + L + +GGM E+ +
Sbjct: 114 ENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGR 173
Query: 352 GFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
++ D+ T ED + + + + G G L N+
Sbjct: 174 ALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 80.3 bits (197), Expect = 9e-18
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 13/230 (5%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 244
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ +
Sbjct: 15 SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGP 74
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
A++ + +L E + E+P DD G + V V+ E ++ K++
Sbjct: 75 AIDWMRQLAEFDIAW--IEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQL 129
Query: 305 VKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
++ D+I I A+VG V L I+ + G+ + + HL+
Sbjct: 130 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCEL--VQHLAMADFV 187
Query: 364 FKFIDLDTPLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
++ + LD + Y G +H +IA
Sbjct: 188 AITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIA 237
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 10/240 (4%)
Query: 172 VSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 230
V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +RA+R D
Sbjct: 1 VRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAVRERFGDD 58
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+ L +L +L EQP+ +D G + + +
Sbjct: 59 VLLQVDANTAYTLGDAPQLARLDPF--GLLLIEQPLEEEDVLGHAEL----ARRIQTPIC 112
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349
DES S +K ++NIK +VG L A + +V A G+ + GGM+ET L
Sbjct: 113 LDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGL 172
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
L++ D + + + + +SG G G + +
Sbjct: 173 GRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLD 232
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Score = 72.3 bits (176), Expect = 4e-16
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVV-AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+KA+ + +A ++ + ++ +E AL+DA K + +P+
Sbjct: 63 GIKANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTFAKSGIESALLDAQGKRLGLPVS 122
Query: 167 RLFGG 171
L GG
Sbjct: 123 ELLGG 127
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 74.3 bits (181), Expect = 9e-16
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 228
+ +I T+ A + K+K+G + +D+E +R+I +AV
Sbjct: 2 MRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGD 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+S +D N+G+ Q A + +L E GV V P ++ GV+
Sbjct: 62 RASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGAL------RRLTEQNGVA 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347
+ ADES SL ++ + + D ++KL +G + L++ V A+G++ G M+++
Sbjct: 116 ILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDS 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ A H+ A L + +L P +L + E+ G G L D
Sbjct: 176 TVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHD 235
Query: 407 NIA 409
+
Sbjct: 236 KVR 238
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 71.1 bits (173), Expect = 1e-15
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQT 106
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
L ++ + LL G+ A +AAVEMAL D A+ +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 167 RLFGG 171
++ GG
Sbjct: 121 QMLGG 125
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 68.6 bits (167), Expect = 7e-15
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE P T E
Sbjct: 3 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+A++ E L + + + G++ A +AAVE+A+ DA AK L
Sbjct: 63 SAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKRSL 120
Query: 166 WRLFG 170
++ G
Sbjct: 121 AKMIG 125
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 67.6 bits (164), Expect = 2e-14
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ E ++VP P ++ + + Q V +R+ S G VG GE + +
Sbjct: 3 IDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVA-GLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+K + +V G + AS +AAVEMAL+D A+++ + +
Sbjct: 62 TIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASAKAAVEMALLDLKARALGVSIA 121
Query: 167 RLFGG 171
L GG
Sbjct: 122 ELLGG 126
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 67.7 bits (164), Expect = 2e-14
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 4/125 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE E
Sbjct: 3 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
T + L + A+ + + GH +AA+E A+ D AK L
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMG--KAALETAIWDLYAKRQQKSL 120
Query: 166 WRLFG 170
FG
Sbjct: 121 TEFFG 125
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 66.4 bits (161), Expect = 5e-14
Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ AE +PL F + + I G G E + ++ A
Sbjct: 5 IEAAEIVVARLPLKFRFETSFGVQTHKVVP-LLILHGEGVQGVAEGTMEARPMYREETIA 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
L + V L RA VEMA D A+++ +PL
Sbjct: 64 GALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGT 123
Query: 168 LFGG 171
L GG
Sbjct: 124 LLGG 127
|
| >d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (154), Expect = 4e-13
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
PL PF IA + V + +E G G GE P D S
Sbjct: 10 FEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSV 68
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
++ K L + + R A++ AL D A+ L L G
Sbjct: 69 VPQLEKGLTREELQKILP----------AGAARNALDCALWDLAARRQQQSLADLIG 115
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 62.5 bits (151), Expect = 8e-13
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 11/124 (8%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E PL L P+ A IRI +G GWGE
Sbjct: 3 IVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFTKR 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
++ + + + HQ A +AV MAL + AK+ +
Sbjct: 63 IIPFLLGKQAGSRLSLVRT---------IQKWHQRA--ASAVSMALTEIAAKAADCSVCE 111
Query: 168 LFGG 171
L+GG
Sbjct: 112 LWGG 115
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 15/230 (6%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQ 243
+ Y +G+ +K+K+G ++ED + A+ + D+ +DAN + +
Sbjct: 20 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLE 79
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
+ + L + +E+ D+ ++ + + ++
Sbjct: 80 TGIAYAKMLRDY--PLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY 137
Query: 304 IVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL---MIGGMVETRLAMGFAGHLSA 359
D + A G+ +EV++ G + + G + L + L
Sbjct: 138 GGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLNIAAGLGLG- 196
Query: 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
G + DL P D V V + G G D
Sbjct: 197 --GNESYPDLFQPYGGFPDGV----RVENGHITMPDLPGIGFEGKSDLYK 240
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 62.2 bits (150), Expect = 2e-12
Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ ++VP P ++ + + + V ++++ + G VG GE + T +
Sbjct: 3 IEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGH--QFASVRAAVEMALIDAVAKSVSMPL 165
+K L S L+ S +AA+++AL D A+++++ +
Sbjct: 62 TIKVI-IDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSI 120
Query: 166 WRLFGG 171
L GG
Sbjct: 121 ADLIGG 126
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 25/124 (20%), Positives = 39/124 (31%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R +NVPL P A + V I + S G VG V + +
Sbjct: 4 ITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + +P + A ++MA DA+ K PL +
Sbjct: 64 LDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVK 123
Query: 168 LFGG 171
L G
Sbjct: 124 LLGA 127
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 60.3 bits (146), Expect = 3e-12
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALID 155
+AG Q SV V AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAE 95
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 61.1 bits (147), Expect = 3e-12
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQT 106
+ E R + +PL+APF + E + +R G P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDG 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
A + + + GH+ A + A+EMA++DA ++
Sbjct: 63 AEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMA--KGALEMAVLDAELRAHERSFA 120
Query: 167 RLFG 170
G
Sbjct: 121 AELG 124
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 61.0 bits (147), Expect = 5e-12
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ +P A ++ + + G + Q +++
Sbjct: 7 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERF 66
Query: 114 ACEVLKESPAMALGSVFGVVAGLL------------PGHQFASVRAAVEMALIDAVAKSV 161
A +L+ P L + + + ++MA+ DAVAK
Sbjct: 67 ASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIA 126
Query: 162 SMPLWRLFGG 171
PL+RL
Sbjct: 127 GKPLFRLLAE 136
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 62.4 bits (150), Expect = 1e-11
Identities = 29/231 (12%), Positives = 72/231 (31%), Gaps = 11/231 (4%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244
+ + K+GF +K+K+G + KED+ + A++ S ++
Sbjct: 21 WISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAA 80
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
A E+ + E+P+ D + + E+ + +
Sbjct: 81 AAFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAG----GENMKGPAQYVPL 136
Query: 305 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
+ D+I + V + + + L+ +A A L +
Sbjct: 137 LSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAHAYDGSLSRLYALFAQACLPPW 196
Query: 365 KFIDLDTPLLLSEDPVLDGY------EVSGAVYKFTNARGHGGFLHWDNIA 409
+ D + D + + + + S + +G G ++ + +
Sbjct: 197 SKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIVN 247
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 59.3 bits (142), Expect = 2e-10
Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 33/258 (12%)
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLK 214
D +V+P E AE A G+ +K+ LK
Sbjct: 19 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 78
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ A+R A+ D+ I++ + A++ + + + L+E+P+H + +
Sbjct: 79 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKY--RIFLYEEPIHPLNSDN 136
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
+ VS + +A E + +++++ V L G + + I
Sbjct: 137 MQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYA 192
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVY 391
+ + ++ A H+ + F + + Y+ Y
Sbjct: 193 NIYDTTVQVHVCGGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYY 252
Query: 392 KFTNARGHGGFLHWDNIA 409
G G L+ + +
Sbjct: 253 VAPEQPGLGQELNDEVVK 270
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 58.2 bits (139), Expect = 3e-10
Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 19/227 (8%)
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIRA 225
S ++ + +P + A K+G+ +KL ++K D++ A+R
Sbjct: 10 SIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVRE 69
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
++ + + L + + E+P+ ++ +
Sbjct: 70 AVGPDIRLMIDAFHWYSRTDALALGR-GLEKLGFDWIEEPMDEQSLS---SYKWLSDNLD 125
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
V + + + +K D++ + V G+ AL+ + + A G+ + G
Sbjct: 126 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHGN 185
Query: 345 VETRLAMGFAGHLSAGLGCF------KFIDLDTPLLLSEDPVL-DGY 384
L + A ++ D L DP+ DG+
Sbjct: 186 TAMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDRDGF 232
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA--EDQQTAMV-KA 111
P+ ++ + + + S+G VG GE P + ED + ++ ++
Sbjct: 12 PVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEGIRKTLEDARHLLINQS 71
Query: 112 SEACEVLKESP--AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ L A A V G AVE AL+D + + + +P+ L
Sbjct: 72 IGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALL 131
Query: 170 G 170
G
Sbjct: 132 G 132
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 54.4 bits (130), Expect = 8e-10
Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 11/133 (8%)
Query: 52 ENRPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + P + A + + + G V D QTA V
Sbjct: 7 ETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAV 66
Query: 110 KA---------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
A + + A L + + AV A D A++
Sbjct: 67 AALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARA 126
Query: 161 VSMPLWRLFGGVS 173
+ PLWR ++
Sbjct: 127 ANKPLWRFIAELT 139
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 53.6 bits (128), Expect = 2e-09
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + + I+ ++G G GE P + + + +
Sbjct: 13 PVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKT 72
Query: 115 CEVLKESPAMALGSVF-----GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
K + + G V +E A++D + + + + + L
Sbjct: 73 LGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLL 132
Query: 170 G 170
G
Sbjct: 133 G 133
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + + V IR+ +G G GE + A+ ++
Sbjct: 5 SIEVFDCELKKRDQT------MSSYNPVLIRVNTDSGLSGIGEVGLAYGAGAK-AGVGII 57
Query: 110 KASEACEVLKESPAMALGS---VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ V ++ + G+ G+ F + +A+++AL D K + +P++
Sbjct: 58 RDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVY 117
Query: 167 RLFGG 171
+L GG
Sbjct: 118 QLLGG 122
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 55.0 bits (131), Expect = 3e-09
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 16/231 (6%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR-AVHPDSSFILDANE 238
+ + A E A + GF +K K+G L +D+ V+R+IR AV D ++D N+
Sbjct: 7 SHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQ 66
Query: 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
A++ + L + E+P + D+EG + +
Sbjct: 67 SLDVPAAIKRSQALQQE--GVTWIEEPTLQHDYEGHQRIQSKLNVPV---QMGENWLGPE 121
Query: 299 DDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358
+ K + G + + GV G + + + G+ + E + A +
Sbjct: 122 EMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTA 181
Query: 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+ +DL ++ G + G G I
Sbjct: 182 ---HWLERLDLAGSVIEPTLTFEGGN------AVIPDLPGVGIIWREKEIG 223
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 12/124 (9%)
Query: 54 RPLNVPLIAPFTIATSRLD----QVENVAIRIELSNGCVGWGEAPVLPHVTA--EDQQTA 107
R A QVE + + +G G E
Sbjct: 9 RVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIVRPHVIEKFVKK 68
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
++ + + + +A A V+ AL D +S+ P+++
Sbjct: 69 VLIGEDHRDRERLWQDLAHWQRGS------AAQLTDRTLAVVDCALWDLAGRSLGQPVYK 122
Query: 168 LFGG 171
L GG
Sbjct: 123 LIGG 126
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 416 | |||
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.97 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.96 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.95 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.95 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.95 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.94 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.93 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.92 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.92 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.91 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.91 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.91 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.91 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.9 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.88 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.87 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.87 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.85 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.81 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.76 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 98.88 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 98.88 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 98.79 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.78 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.75 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.52 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 98.28 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.26 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 97.87 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 97.6 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 97.54 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 96.93 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 96.92 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 96.83 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.4 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 95.65 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 94.39 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 93.26 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 92.36 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 91.76 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 90.07 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 88.91 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 88.0 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 87.62 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 87.14 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 85.67 |
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.9e-50 Score=379.22 Aligned_cols=235 Identities=22% Similarity=0.288 Sum_probs=217.9
Q ss_pred CceeeeeEeecCCCHHHHHHHHHHHH-HcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 014886 173 SNTITTDITIPIVSPAEAAELASKYR-KQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
+++||+|++++..++++..+++.+.+ ++||++||||+| .++++|+++|+++|+. ++++.|++|+|++||+++|++++
T Consensus 3 rd~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (242)
T d1muca1 3 RDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRAC 82 (242)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHH
T ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHH
Confidence 57899999999988888776666655 589999999998 5689999999999997 79999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (242)
T d1muca1 83 QVLGDNGI--DLIEQPISRINRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 156 (242)
T ss_dssp HHHHHTTC--CCEECCBCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhhhhhH--HHhhcchhhhhhhhhhhhhh----hhhheeecccccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence 99999997 59999999999999999975 68899999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-cCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhh
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~ 407 (416)
+++|+++|+++++|++++++|++++++|++++++++.+. +++++..+.++++++++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~d~ 236 (242)
T d1muca1 157 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQR 236 (242)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCTTCBCCCGGGGBSSCSBSSCCEEETTEEECCCCSBTSCCBCHHH
T ss_pred HHHHHhCCCCcccccccccccchhhhhhHHhhccccccccccCchhhhhhhhccCCCeEECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999988764 4666777788999999999999999999999999999999
Q ss_pred HHhhhc
Q 014886 408 IAWGLQ 413 (416)
Q Consensus 408 l~~~~~ 413 (416)
|++|++
T Consensus 237 l~~y~~ 242 (242)
T d1muca1 237 LARFAR 242 (242)
T ss_dssp HHHHBC
T ss_pred HHHhcC
Confidence 999974
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=4.3e-50 Score=377.24 Aligned_cols=237 Identities=23% Similarity=0.334 Sum_probs=217.3
Q ss_pred CceeeeeEeecCCCHHH-HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 014886 173 SNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
+++||+|++++..++++ +.+.++.+.++||++||||+| .++++|+++|+++|+. ++++.|++|+|++|++++|++++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYI 82 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHH
Confidence 56899999998876655 555556677789999999998 6899999999999998 79999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++++ .|+|||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 83 PELEALGV--ELIEQPVGRENTQALRRLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHTTTC--CEEECCSCSSCHHHHHHHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHhhhhH--HHHhhhhhhccchhhhhhcc----ceeeeeeecccccccchhhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999997 59999999999999999975 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhh
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~ 407 (416)
+++|+++|+++++|++++++|+.++++|+++++++..+ +++.+++.+.++++.+++.++||++.+|++||||+++|+++
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~ 236 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDK 236 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHH
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCcceeccCchhhhhhhcccCCceeECCEEECCCCCCCCeEECHHH
Confidence 99999999999999999999999999999999998876 45666766778888888999999999999999999999999
Q ss_pred HHhhhccC
Q 014886 408 IAWGLQTS 415 (416)
Q Consensus 408 l~~~~~~~ 415 (416)
|++|.+-|
T Consensus 237 l~~~~~~~ 244 (244)
T d2chra1 237 VRQYARVS 244 (244)
T ss_dssp HHHHCCCC
T ss_pred HHHHhccC
Confidence 99998743
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=8.1e-50 Score=375.19 Aligned_cols=235 Identities=24% Similarity=0.363 Sum_probs=215.7
Q ss_pred CceeeeeEeecCCCHHHH-HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 014886 173 SNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~ 249 (416)
|++||+|++++..++++. .+.++++.++||++||||+| .++++|+++|+++|++ ++++.|++|+|++||+++|++++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 82 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHH
Confidence 568999999887766655 44556666789999999998 6899999999999998 89999999999999999999999
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
+.|+++++ .|+|||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 83 PRLEEAGV--ELVEQPVPRANFGALRRLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHTC--CEEECCSCTTCHHHHHHHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhcchhh--hhhhhhhhhccccccccchh----ccccccccccccccchhhhhccccccccccccccccccchHHHHHH
Confidence 99999987 49999999999999999975 78999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhh
Q 014886 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~ 407 (416)
+++|+++|+++++|++++++|+.++++|+++++|+..+ +++.+++.+.++++.+++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGv~~d~d~ 236 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDK 236 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCceeeecCchHHhhhhcccCCCeEECCEEECCCCCCcCeeECHHH
Confidence 99999999999999999999999999999999999876 45566666677888999999999999999999999999999
Q ss_pred HHhhhc
Q 014886 408 IAWGLQ 413 (416)
Q Consensus 408 l~~~~~ 413 (416)
|++|++
T Consensus 237 l~~y~~ 242 (243)
T d1nu5a1 237 VRHYTR 242 (243)
T ss_dssp HHHHBC
T ss_pred HHHHhc
Confidence 999986
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=1.3e-48 Score=367.15 Aligned_cols=235 Identities=25% Similarity=0.377 Sum_probs=215.5
Q ss_pred CceeeeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014886 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 173 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
+++|++|++++.. +++++.+++++++++||++||||+|+ ++|+++++++|+..|+++||+|+|++|+.++|+ ++++
T Consensus 2 r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~-~~~~ 78 (244)
T d1wufa1 2 KESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDFL-LLKE 78 (244)
T ss_dssp CSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGHH-HHHT
T ss_pred CCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cHHHHHHHHHHHhccchhhhhhhhccccchhhh-hhhc
Confidence 5689999999974 79999999999999999999999996 579999999999988999999999999999997 5688
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
|+++++ .|||||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~wiEeP~~~~d~~~~~~l~~----~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~ 152 (244)
T d1wufa1 79 LDQYDL--EMIEQPFGTKDFVDHAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAE 152 (244)
T ss_dssp TGGGTC--SEEECCSCSSCSHHHHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHH
T ss_pred ccccch--hhhcCcccccchhhhhcccc----ccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHHH
Confidence 999987 59999999999999999874 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHH
Q 014886 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (416)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~ 409 (416)
+|+++|+++++|++++++++.++++|+++..++..+.++.. +..+.++++.+++.++||++.+|++||||+|+|++.|+
T Consensus 153 ~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~i~~p~~pGLGie~d~~~l~ 232 (244)
T d1wufa1 153 YCALNEILVWCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLK 232 (244)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHcCCEEecCCCCCccHHHHHHHHHHhccCccchhhhcccchhhhhhccCCCceEECCEEECCCCCCcCeeECHHHHH
Confidence 99999999999999999999999999999888766666543 34456788888999999999999999999999999999
Q ss_pred hhhccCC
Q 014886 410 WGLQTSE 416 (416)
Q Consensus 410 ~~~~~~~ 416 (416)
+|...+|
T Consensus 233 ~~~~~~~ 239 (244)
T d1wufa1 233 KYTKSTE 239 (244)
T ss_dssp TTEEEEE
T ss_pred HhhCCce
Confidence 9987654
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=5.5e-48 Score=362.30 Aligned_cols=233 Identities=22% Similarity=0.306 Sum_probs=212.1
Q ss_pred CceeeeeEeecC-CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 014886 173 SNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 173 ~~~v~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
|++||+|++++. .+++++.+++++++++||++||||+|. ++|+++++++|+. +++++||+|+|++|++++|+++.+
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~ 79 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 79 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHT
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHHhh
Confidence 568999999986 589999999999999999999999985 6899999999997 899999999999999999999876
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHH
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~ 329 (416)
|+++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++
T Consensus 80 -l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~ 152 (242)
T d1sjda1 80 -LDPFGL--LLIEQPLEEEDVLGHAELAR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVH 152 (242)
T ss_dssp -TGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred -hhhhhh--HHHHhhhhhhhHHHHHHHHh----ccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHH
Confidence 999987 59999999999999999874 78999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHH
Q 014886 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~ 409 (416)
++|+++|+++++|+++++++++++++|+++..++..+.++..+..+..+.+++++.++||++.+|++||||+|+|+|+|+
T Consensus 153 ~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGLGie~d~~~l~ 232 (242)
T d1sjda1 153 DVCAAHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLD 232 (242)
T ss_dssp HHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTBCSCBSCCCGGGTCSSCSSSCCCCSSSEEECCCSSBTSCCCCHHHHH
T ss_pred HHHHHCCCEEeecccccchhHHHHHHHHhhccccccccccccchhhhHhhccCCCeEECCEEECCCCCCCcEEECHHHHH
Confidence 99999999999999999999999999998655544445566665555677788889999999999999999999999999
Q ss_pred hhhcc
Q 014886 410 WGLQT 414 (416)
Q Consensus 410 ~~~~~ 414 (416)
+|+..
T Consensus 233 ~~~~~ 237 (242)
T d1sjda1 233 EVTTA 237 (242)
T ss_dssp HHEEE
T ss_pred HhhcC
Confidence 99864
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.8e-48 Score=369.79 Aligned_cols=233 Identities=16% Similarity=0.212 Sum_probs=212.3
Q ss_pred CceeeeeEeec----------CCCHHHHHHHHHHHHHcCCCEEEEecCC------------------------ChhHHHH
Q 014886 173 SNTITTDITIP----------IVSPAEAAELASKYRKQGFTTLKLKVGK------------------------NLKEDIE 218 (416)
Q Consensus 173 ~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~G~~~~KiKvG~------------------------~~~~d~~ 218 (416)
+++|++|++.. ..+|+++++.+++++++||+++|++++. +++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 56899999842 3589999999999999999999998652 3578999
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 219 ~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
+|++||++ |+++.||+|+|++|+.++|+++++.|+++++ .|+|||++++|++++++|++ ++++||++||++++
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l--~wiEePi~~~d~~~~~~L~~----~~~ipIa~gE~~~~ 156 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYT 156 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCT
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhccccc--ceecccccccchhhhhhhcc----ccccceecccccCC
Confidence 99999997 8999999999999999999999999999986 69999999999999999975 78999999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC-c-c
Q 014886 298 LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-L-L 374 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p-~-~ 374 (416)
..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. +++|+.++++|++++++|+.+.|+... . .
T Consensus 157 ~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~~H~~-~~~i~~~a~~hl~aa~~n~~~~e~~~~~~~~ 235 (278)
T d2gl5a1 157 RWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKA 235 (278)
T ss_dssp THHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCH
T ss_pred hHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhccccccccc-cCchhhhhhhhhhhccCceeeeeccccchhh
Confidence 999999999999999999999997 99999999999999999999985 799999999999999999988776432 2 2
Q ss_pred cccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 375 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 375 ~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
..++++++++.++||++.+|++||||||+|++.|++|.
T Consensus 236 ~~~~l~~~~~~~~~G~~~~p~~PGLGie~de~~l~~y~ 273 (278)
T d2gl5a1 236 SIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVKEYL 273 (278)
T ss_dssp HHHTTBSSCCCCBTTEECCCCSSBTSCCBCHHHHTTTE
T ss_pred hHHhhccCCCeeeCCEEECCCCCCCceeeCHHHHhhcc
Confidence 33678888999999999999999999999999999995
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=9.6e-48 Score=360.90 Aligned_cols=233 Identities=23% Similarity=0.328 Sum_probs=213.5
Q ss_pred CceeeeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014886 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 173 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
+++|++|++++.. +++++.+++++++++||++||||+|. +.|+++|+++|++.+++.|+||+|++||.++|+++ +.
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~D~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~-~~ 78 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL-RQ 78 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HT
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc--chhHHHHHHHHHhccCceEEEeccccCchHHHHHh-hh
Confidence 5789999999864 67888999999999999999999986 46999999999997799999999999999999886 88
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
|+++++ .|||||++++|+++++++++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~ 152 (243)
T d1r0ma1 79 LDEYDL--TYIEQPLAWDDLVDHAELAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHD 152 (243)
T ss_dssp TGGGCC--SCEECCSCTTCSHHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHH
T ss_pred hhhccc--hhhhhhccccchHHHHHHhh----cCCcccccccchhhhhhhhhhhhcccccceecccceeccHHHHHHHHH
Confidence 999987 59999999999999999975 78999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC-CcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHH
Q 014886 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (416)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~ 409 (416)
+|+++|+++++|++++++++.++++|++++.++..+.++.. +..+.++++.+++.++||++.+|++||||+++|+|+|+
T Consensus 153 ~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ 232 (243)
T d1r0ma1 153 VAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232 (243)
T ss_dssp HHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHCCCceecccccccchhhhHHHHHHhhccccccccccccchhhhhhhcCCCCeeECCEEECCCCCCCcEeECHHHHH
Confidence 99999999999999999999999999999888766655543 34456788899999999999999999999999999999
Q ss_pred hhhcc
Q 014886 410 WGLQT 414 (416)
Q Consensus 410 ~~~~~ 414 (416)
+|...
T Consensus 233 ~~~~~ 237 (243)
T d1r0ma1 233 TVTEA 237 (243)
T ss_dssp HTEEE
T ss_pred HHHHH
Confidence 99764
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2e-47 Score=356.70 Aligned_cols=226 Identities=37% Similarity=0.570 Sum_probs=214.8
Q ss_pred CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 014886 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
+++|++++++++.+|+++.+++++++++||++||+|+| .++++|+++|+++|++ ++++.|++|+|++|++++|+++++
T Consensus 2 r~~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~ 81 (234)
T d1jpma1 2 RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIR 81 (234)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHH
T ss_pred CCcceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHH
Confidence 56899999999999999999999999999999999998 4899999999999997 899999999999999999999999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHH
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~ 329 (416)
.|+++++.+.|+|||++++|++++++|++ ++++||+.||++++..++.++++.+++|++|+|++++| ++++++++
T Consensus 82 ~le~~~~~i~~~EeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~ 157 (234)
T d1jpma1 82 KMEDAGLGIELVEQPVHKDDLAGLKKVTD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKIN 157 (234)
T ss_dssp HHHHTTCCEEEEECCSCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhccCceeeecCCccccCHHHHHHhhc----cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHH
Confidence 99986655679999999999999999875 78999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
++|+++|+++++|++++++++.++++|+++++++..++|+++|..+.++++.++++++||++.+|++|||||.
T Consensus 158 ~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~~p~~pGLGi~ 230 (234)
T d1jpma1 158 AMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGII 230 (234)
T ss_dssp HHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEE
T ss_pred HHHHhcCeeEeecccccCCchHHHHHHHHHhccCCceeecCCchhhhhhccCCCceEECCEEECCCCCeeeeE
Confidence 9999999999999999999999999999999999999999998888889999899999999999999999984
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2e-47 Score=361.50 Aligned_cols=236 Identities=17% Similarity=0.215 Sum_probs=208.2
Q ss_pred CceeeeeEeecCC--C---HHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHH
Q 014886 173 SNTITTDITIPIV--S---PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 173 ~~~v~~~~~~~~~--~---~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A 245 (416)
|++||+|++++.. + .+++.+++++++++||++||||+| .++++|+++|++||++ |+++.|++|+|++|++++|
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A 82 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAA 82 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHH
Confidence 6789999997642 2 356778888889999999999998 6899999999999997 8999999999999999999
Q ss_pred HHHHHHHHhC-CCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 246 VEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 246 ~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
+++++.|+++ ++ .|+|||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++
T Consensus 83 ~~~~~~l~~~~~i--~~~EeP~~~~d~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 83 FKWERYFSEWTNI--GWLEEPLPFDQPQDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HTTHHHHTTCSCE--EEEECCSCSSCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHhhcCce--eEeccccccchHHHHHHHhh----cccceeecCccccchhhHHHHHHhhcceeeeccccccccHH
Confidence 9999999996 54 69999999999999999874 78999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCC------cceeEeCcEEEcCCCC
Q 014886 324 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL------DGYEVSGAVYKFTNAR 397 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~------~~~~~~~G~~~~p~~P 397 (416)
++++++++|+++|+++++|+. +++++.++++|+++++++..+.+...+.....+.+. ..+.++||++.+|++|
T Consensus 157 ~~~~i~~~a~~~~i~v~~h~~-~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 235 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGK 235 (256)
T ss_dssp HHHHHHHHHHHHTCEECCCCS-SCSHHHHHHHHHHHTSCCSSSCTTSCSCCEEEECSSCGGGGGBCCCCBTTEEECCCSS
T ss_pred HHHHHHHHHhhhccccccccc-ccccchHHHHHHHHhCccchhhccccccceeeccccccccccCCceeeCCEEECCCCC
Confidence 999999999999999999975 789999999999999999877665443222222222 2467899999999999
Q ss_pred CcccccChhhHHhhhccC
Q 014886 398 GHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 398 GlGield~~~l~~~~~~~ 415 (416)
|||+|+|+|+|++|..+.
T Consensus 236 GLGieid~~~l~~y~~~~ 253 (256)
T d2gdqa1 236 GIGTEINMEIVNRYKWDG 253 (256)
T ss_dssp BTSSCBCHHHHHHTBCCS
T ss_pred CCCeEeCHHHHhhCCCCC
Confidence 999999999999998764
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=4.3e-47 Score=355.86 Aligned_cols=232 Identities=21% Similarity=0.310 Sum_probs=210.5
Q ss_pred CceeeeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014886 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 173 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
+++||+|++++.. +++++.+++++++++||++||||+|+ +.|+++|+++|+.++++.|+||+|++|+.++|+++ .+
T Consensus 2 r~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~D~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~-~~ 78 (241)
T d1wuea1 2 RRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADLPQL-QR 78 (241)
T ss_dssp CSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HG
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cHHHHHHHHHHHhccccceeecccccCCHHHhhhh-hh
Confidence 5789999998874 78899999999999999999999986 57999999999998899999999999999999886 56
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
+.++++ .|||||++.+|++++++|++ .+++||++||++++..++.++++.+++|++|+|++++| +++++++++
T Consensus 79 ~~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~ 152 (241)
T d1wuea1 79 LDHYQL--AMIEQPFAADDFLDHAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAA 152 (241)
T ss_dssp GGGSCC--SCEECCSCTTCSHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred hhhhhh--hhhcCcccccchhhhhhhhc----ccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHHH
Confidence 888887 59999999999999999874 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHH
Q 014886 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (416)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~ 409 (416)
+|+++|+++++|+++++++++++++|+++..++....|+... ..+.+|++++++.++||++.+|++||||+++|++.|+
T Consensus 153 ~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~~~l~ 232 (241)
T d1wuea1 153 FCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232 (241)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHH
T ss_pred HHHHcCCEEEecccccccccccchhhhccccccccccccccccchhhhhccCCCCeEECCEEECCCCCCCceEECHHHHH
Confidence 999999999999999999999999999887666544566543 2345788888899999999999999999999999999
Q ss_pred hhhc
Q 014886 410 WGLQ 413 (416)
Q Consensus 410 ~~~~ 413 (416)
+|.+
T Consensus 233 ky~~ 236 (241)
T d1wuea1 233 KYSQ 236 (241)
T ss_dssp HHEE
T ss_pred HHHH
Confidence 9975
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.7e-46 Score=347.53 Aligned_cols=223 Identities=20% Similarity=0.248 Sum_probs=205.6
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
|+.|.+.++.+++.+.+++++++++||++||||+| .++++|+++|+++|+. |+++.|++|+|++||+++|+++++.|+
T Consensus 2 ~~ay~~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~ 81 (227)
T d2mnra1 2 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 81 (227)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhh
Confidence 67788888888999999999999999999999998 5789999999999997 899999999999999999999999999
Q ss_pred hCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHH
Q 014886 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (416)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A 332 (416)
++++ .|||||+++++++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|
T Consensus 82 ~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a 155 (227)
T d2mnra1 82 QEGV--TWIEEPTLQHDYEGHQRIQS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALA 155 (227)
T ss_dssp HHTC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred hchh--hhhcCcccccchhhhHHHHH----HcCCccccCceeEeechhhhhHhcCceeeeecccccccchhhHHHHHHHH
Confidence 9987 59999999999999999875 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 333 ~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
+++|+++++|++ ..+++|+++++++..++|.. .+.++++.+++.++||++.+|++||||+++|+++|++|+
T Consensus 156 ~~~g~~~~~h~~------~~~~~hl~aa~~~~~~~e~~---~~~~~~~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ky~ 226 (227)
T d2mnra1 156 QQFGIPMSSHLF------QEISAHLLAATPTAHWLERL---DLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYL 226 (227)
T ss_dssp HHHTCCBCCBSC------HHHHHHHHHTCTTBCCEEEC---CSSGGGBCCCSEEETTEEECCSSSBTCCCBCHHHHHHHB
T ss_pred HHcCCcccccch------hhhhhhhhhcCCccceeecc---cCchhhcCCCceeECCEEECCCCCCCCEEECHHHHhhCc
Confidence 999999999876 34778999999998887753 234667788899999999999999999999999999997
Q ss_pred c
Q 014886 413 Q 413 (416)
Q Consensus 413 ~ 413 (416)
+
T Consensus 227 v 227 (227)
T d2mnra1 227 V 227 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=2.5e-45 Score=346.74 Aligned_cols=229 Identities=18% Similarity=0.293 Sum_probs=198.4
Q ss_pred CceeeeeEeec--------CCCHHHHHHHHHHHHHcCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeC
Q 014886 173 SNTITTDITIP--------IVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDA 236 (416)
Q Consensus 173 ~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDa 236 (416)
|++||+|++.. ..+|+++.+.+++++++||++||+|+|. ++++|+++|++||+. |+++.|+||+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 57899998864 3479999999999999999999999983 579999999999998 8999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHH-HHHHHHHcCCCCEEEe
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINI 315 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~-d~~~~i~~~a~d~v~~ 315 (416)
|++||+++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||++++.. ++.++++.+++|++|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~~----~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~ 155 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGF--DWIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 155 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred ccccccchhhhhhhhcccchh--hhhcCCcccccHHHHHHHHH----hcccceeehhhcccchhhhhhhhhhchhhhccc
Confidence 999999999999999999997 59999999999999999975 7899999999999976 5688999999999999
Q ss_pred CCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCc--CCccc----ccC-CCCcceeEe
Q 014886 316 KLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD--TPLLL----SED-PVLDGYEVS 387 (416)
Q Consensus 316 k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~--~p~~~----~~d-~~~~~~~~~ 387 (416)
|++++| ++++++++++|+++|+++++|++. ++++|+++++++..+.+.. .+... .+. .....+.++
T Consensus 156 d~~~~GGit~~~~i~~~a~~~gi~v~~h~~~------~~~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 229 (255)
T d1rvka1 156 GVNDVGGITPALKTMHLAEAFGMECEVHGNT------AMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDR 229 (255)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCCEEECCCS------HHHHHHHHHCSSCCCEEEEEECTTSCGGGCCTTBSSCSSCBCT
T ss_pred cccccccchHHHHHHHHHHHhccceeccccc------hhHHHHHHHhhhhhhcccccccccccccchhhhhhccCCCeee
Confidence 999998 999999999999999999999974 3667898888887665432 12111 111 122345689
Q ss_pred CcEEEcCCCCCcccccChhhHHhhhc
Q 014886 388 GAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 388 ~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
||++.+|++|||||++|+++|++|.+
T Consensus 230 ~G~i~vp~~PGLGieid~~~l~~y~V 255 (255)
T d1rvka1 230 DGFVHVPDRPGLGEDIDFTFIDNNRV 255 (255)
T ss_dssp TSEEECCSCSBTCCCBCHHHHHHTBC
T ss_pred CCEEECCCCCCCCeeECHHHHhhCcC
Confidence 99999999999999999999999964
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=2.1e-45 Score=346.79 Aligned_cols=234 Identities=23% Similarity=0.243 Sum_probs=199.2
Q ss_pred eeeeEeec---CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 014886 176 ITTDITIP---IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 176 v~~~~~~~---~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
+|+|++.+ ..+++++.+++++++++||++||||+|.+++.|+++|++||+. |+++.|++|+|++|+.++|+++++.
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 81 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQ 81 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHT
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHh
Confidence 57887643 2478999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
|+++++ .|||||++++|+++++++++ +.+++||++||++++..++.++++.+++|++|+|++++| +++++++++
T Consensus 82 l~~~~~--~~iEeP~~~~d~~~~~~~~~---~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~ 156 (252)
T d1yeya1 82 LAEFDI--AWIEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILL 156 (252)
T ss_dssp TGGGCC--SCEECCSCTTCHHHHHHHHH---HSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHH
T ss_pred hhhcCc--eeecCCcchhhHHHHHHHhh---ccCCCceeccccccchhhhhhHhhccccceeccccccccCchhhhHHHH
Confidence 999997 49999999999999988764 346899999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhH
Q 014886 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (416)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l 408 (416)
+|+++|+++++|+..++.++.++++|.+++..+... .+...+. ....+.+.+++.++||++.+|++||||+|+|+|+|
T Consensus 157 ~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v~vp~~pGLGield~d~l 236 (252)
T d1yeya1 157 LAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 236 (252)
T ss_dssp HHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCSSGGGBSSCCCBSSSEECCCCSSBCSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccccccccccchhhhHHhcCCCCeEECCEEECCCCCCCCeeECHHHH
Confidence 999999999999987666666666666555433221 1111111 11245567778999999999999999999999999
Q ss_pred Hhhhcc
Q 014886 409 AWGLQT 414 (416)
Q Consensus 409 ~~~~~~ 414 (416)
++|..+
T Consensus 237 ~~y~~~ 242 (252)
T d1yeya1 237 AEFSYP 242 (252)
T ss_dssp HHHBTT
T ss_pred hhCCCC
Confidence 999764
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=1e-43 Score=334.20 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=199.0
Q ss_pred CceeeeeEeecC----CCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH
Q 014886 173 SNTITTDITIPI----VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 246 (416)
Q Consensus 173 ~~~v~~~~~~~~----~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~ 246 (416)
+++|++|++.+. .+++++.+++++++++||++||||+| .++++|+++|++||+. ++++.||+|+|++|++++|+
T Consensus 3 ~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 3 NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 568999998775 37888999999999999999999999 5899999999999997 89999999999999999999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC----CCEEEeCCCCCc-
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL----ADVINIKLAKVG- 321 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a----~d~v~~k~~k~G- 321 (416)
++++.|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.++ +|++|+|++++|
T Consensus 83 ~~~~~l~~~~i--~wiEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GG 156 (247)
T d1tzza1 83 AYAKMLRDYPL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 156 (247)
T ss_dssp HHHHHHTTSCC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTC
T ss_pred HHHhhcchhhh--hhhccccccccchhhhhhhh----ccccccccchhhhhhHHHHHHHHccCCcCcceeEeeccccccc
Confidence 99999999997 59999999999999999874 78999999999999999999999876 599999999997
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCccc
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGi 401 (416)
++++++++++|+++|+++.+|+..+ +...+++.+.++++.+.. ++.. .....+.+.+++.++||++.+|++||||+
T Consensus 157 it~~~~i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~i~~G~i~~p~~pGlGi 232 (247)
T d1tzza1 157 LCEYQRTLEVLKTHGWSPSRCIPHG-GHQMSLNIAAGLGLGGNE--SYPD-LFQPYGGFPDGVRVENGHITMPDLPGIGF 232 (247)
T ss_dssp HHHHHHHHHHHHHTTCCGGGBCCSC-CBHHHHHHHHHHTCSCEE--ECTT-CSTTTBSCSTTCCCBTTEEECCCCSBTSG
T ss_pred hhHHHHHHHHHHHcCCCeeccCCCc-HHHHHHHHHHHhcCCCce--eecc-hhhhhhcCCCCcEEECCEEECCCCCCcce
Confidence 9999999999999999988776543 334444444444443322 2111 11223566778899999999999999999
Q ss_pred ccChhhHHhhhccCC
Q 014886 402 FLHWDNIAWGLQTSE 416 (416)
Q Consensus 402 eld~~~l~~~~~~~~ 416 (416)
|+|+|++++|..=+|
T Consensus 233 e~d~d~l~~~~~~~~ 247 (247)
T d1tzza1 233 EGKSDLYKEMKALAE 247 (247)
T ss_dssp GGCHHHHHHHHTTCC
T ss_pred eECHHHHHHHHhhhC
Confidence 999999999986554
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-44 Score=348.62 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHHHc-CCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 186 SPAEAAELASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~-G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+|+++++.+++++++ ||+++|||+| .++++|+++|++||++.|++.||||+|++||+++|+++++.|+ +++ .|||
T Consensus 47 ~p~~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l--~w~E 123 (309)
T d1jdfa1 47 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSL--AYAE 123 (309)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTC--SCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcc--hhhh
Confidence 688899999988887 9999999999 5789999999999999888999999999999999999999996 565 5999
Q ss_pred cCCCCCCH----HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 264 QPVHRDDW----EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 264 eP~~~~d~----~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
||++++|. +.+++|+ +++++||++||++++..++.++++.+++|++|+|+ ++| ++++++++++|+++|++
T Consensus 124 EPv~~~d~~~~~~~l~~lr----~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi~ 198 (309)
T d1jdfa1 124 DPCGAEQGFSGREVMAEFR----RATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGLT 198 (309)
T ss_dssp SCBCCBTTBCHHHHHHHHH----HHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCC
T ss_pred hhcccCcchhhHHHHHHhh----cccccceecCcccchhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCCC
Confidence 99998773 4455555 47899999999999999999999999999999997 666 99999999999999999
Q ss_pred EEEccCCchHHHHHHHHHHHccCCCCceec-CcCC-cccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 339 LMIGGMVETRLAMGFAGHLSAGLGCFKFID-LDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 339 ~~~~~~~es~ig~~a~~hlaaa~~~~~~~e-~~~p-~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+++|++.+++|++++++|+++++|+..+.+ ...+ ....++++.+++.++||++.+|++||||||+|+|+|++|.+
T Consensus 199 v~~H~~~~~~i~~aa~~hlaaa~p~~~~~~~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGvelD~d~L~ky~~ 275 (309)
T d1jdfa1 199 WGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHE 275 (309)
T ss_dssp CBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCCBCHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHhCCCCccccccccccchhhHhhcCCCceEECCEEECCCCCCCCeEECHHHHHHHHH
Confidence 999999899999999999999999865422 2221 22356778888999999999999999999999999999964
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-40 Score=302.88 Aligned_cols=205 Identities=31% Similarity=0.437 Sum_probs=187.6
Q ss_pred CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 014886 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 252 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L 252 (416)
+++++++.++++.+|+++.+++++++++||++||||+|. +.|+++++++|+..|++.|++|+|++|++++|+++++.|
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--~~d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l 80 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLL 80 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHH
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CcHHHHHHHHHHhccccEEEEecccccchhHHHHHHHHH
Confidence 357899999999999999999999999999999999996 469999999999988999999999999999999999999
Q ss_pred HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHH
Q 014886 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEV 331 (416)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~ 331 (416)
+++++ .|||||++++|.+++++++ ..+||+.||++.+..+++++ .+++|++|+|++++| ++++++++++
T Consensus 81 ~~~~l--~~iEeP~~~~d~~~~~~l~------~~~pi~~~E~~~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~ 150 (208)
T d1jpdx1 81 ADLGV--AMLEQPLPAQDDAALENFI------HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATE 150 (208)
T ss_dssp HHTTC--CEEECCSCTTSCGGGGSSC------CSSCEEESTTCSSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHH
T ss_pred Hhccc--cccCccCCccCHHHHHhhh------cccceecCCCcCCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHH
Confidence 99997 5999999999999888773 47899999999999999887 478999999999997 9999999999
Q ss_pred HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEc
Q 014886 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 332 A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~ 393 (416)
|+++|+++++||++++++++++++|+++ ++.+.|+++++.+.+|+ .++++++||++++
T Consensus 151 a~~~g~~~~~~~~~~~~i~~~a~~~~a~---~~~~~dld~~~~~~~di-~~~l~i~dG~i~l 208 (208)
T d1jpdx1 151 ARAQGFSLMLGCMLCTSRAISAALPLVP---QVSFADLDGPTWLAVDV-EPALQFTTGELHL 208 (208)
T ss_dssp HHHTTCEEEECCCSCCHHHHHHHGGGGG---GCSEECCCGGGGBSSCC-SSCCEEETTEEEC
T ss_pred HHHcCCeeeecCCchhHHHHHHHHHHhc---cCCCccccchhhhhhcC-CCCCeEeCCEEeC
Confidence 9999999999999999999999999875 56788999988777775 6789999999975
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-35 Score=273.00 Aligned_cols=187 Identities=22% Similarity=0.235 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC-Cceee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV-TPVLF 262 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l-~~~~i 262 (416)
.+|+++.++++++ +||++||+||| .++++|+++|++||+..|+++||+|+|++|++++|+++++.|++++. .+.|+
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie~~ 90 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFL 90 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCCCCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCeeee
Confidence 4899988887764 79999999999 57899999999999998899999999999999999999999987531 23699
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~ 341 (416)
|||++ +.++++++++ ++++||++||++++..+ ..+..+++|++|+|++++| ++++++++++|+++|+++++
T Consensus 91 E~P~~--~~~~~~~l~~----~~~ipIa~dEs~~~~~~--~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 91 EEPCK--TRDDSRAFAR----ETGIAIAWDESLREPDF--AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp ECCBS--SHHHHHHHHH----HHCCCEEESGGGGSTTC--CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhh--hhhHHHHHhh----cccchhhhccccchhHH--HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 99986 4567887764 78999999999988654 3455678999999999997 99999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCC
Q 014886 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381 (416)
Q Consensus 342 ~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~ 381 (416)
||+++|+||+++++|+|+++++..++++++..++.+|++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~~~~~gldt~~~~~~d~~~ 202 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVR 202 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCTTSCCBCTTGGGBSCEESS
T ss_pred cCCcchHHHHHHHHHHHHhCCCCCCCCCCchhHHhhcccc
Confidence 9999999999999999999988777888877766666543
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.97 E-value=1.6e-30 Score=243.12 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=157.2
Q ss_pred CCCCceeeeeEeecCCCHHHHHHHHHHHH----HcCCCEEEEecCCChhHHHH-------HHHHHHHh-CCCcEEEEe--
Q 014886 170 GGVSNTITTDITIPIVSPAEAAELASKYR----KQGFTTLKLKVGKNLKEDIE-------VLRAIRAV-HPDSSFILD-- 235 (416)
Q Consensus 170 Gg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~G~~~~KiKvG~~~~~d~~-------~v~avr~~-g~~~~L~vD-- 235 (416)
|++.++||+|.+.+...+......+.+.+ ..||+.+|+|+|.+.+.|.+ +|+++|+. ++++.|++|
T Consensus 1 G~~~~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~ 80 (253)
T d1kcza1 1 GAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVY 80 (253)
T ss_dssp TCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECT
T ss_pred CCCcCCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehhh
Confidence 45667888888777665544333333322 46899999999987666554 77777776 789999999
Q ss_pred ----CCCCCCHHHHHHHHHHHHhCCCC-ceeeecCCCCCC----HHHHHHhHHhh-hccCCCeEEeCCCCCCHHHHHHHH
Q 014886 236 ----ANEGYKPQEAVEVLEKLYEMGVT-PVLFEQPVHRDD----WEGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 236 ----aN~~w~~~~A~~~~~~L~~~~l~-~~~iEeP~~~~d----~~~~~~l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i 305 (416)
+|++|++++|+++++.|++.... +.|||||++.+| ++++++|++.+ ++.+++||++||+++++.++.+++
T Consensus 81 ~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i 160 (253)
T d1kcza1 81 GTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFT 160 (253)
T ss_dssp THHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHH
T ss_pred hccCccCCCCHHHHHHHHHHHHHhcCCCCceEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHH
Confidence 57799999999999999865321 248999999988 46677776532 124689999999999999999999
Q ss_pred HcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc-cCCchHHHHHHHHHHHccCC
Q 014886 306 KGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 306 ~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~-~~~es~ig~~a~~hlaaa~~ 362 (416)
+.+++|++|+|++++| ++++++++++|+++|+++++| ++.||.++.++.+|+|.++.
T Consensus 161 ~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~ 219 (253)
T d1kcza1 161 DNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACG 219 (253)
T ss_dssp HTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred HhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcC
Confidence 9999999999999998 999999999999999999986 58899999999999998764
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=5.1e-29 Score=208.99 Aligned_cols=124 Identities=31% Similarity=0.523 Sum_probs=115.3
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (416)
|||++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+.+++|+...+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g~~~~ 80 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999888899988877776665 68999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+++.+++.+...++++. .|++||||||||++||..|+|||+||||
T Consensus 81 ~~~~~~~~l~~~~~~~~--~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 81 GYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp GHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cHHHHHHHhhhhccCcc--HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99999999988777764 5799999999999999999999999997
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.95 E-value=1.3e-28 Score=229.32 Aligned_cols=190 Identities=15% Similarity=0.206 Sum_probs=154.7
Q ss_pred CceeeeeEeecCCCHHHHHHHH----HHHHHcCCCEEEEecCCC-------hhHHHHHHHHHHHh-CCCcEEEEeCCC--
Q 014886 173 SNTITTDITIPIVSPAEAAELA----SKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANE-- 238 (416)
Q Consensus 173 ~~~v~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~KiKvG~~-------~~~d~~~v~avr~~-g~~~~L~vDaN~-- 238 (416)
..+||+|.+.+....+.....+ ..+...+|..+|.|+|.+ +++++++|+++|.. |+++.|++|+|+
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~ 83 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTI 83 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHH
T ss_pred CCCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeecccccc
Confidence 3567888777666554322222 222245799999999953 45677889999886 899999999766
Q ss_pred ----CCCHHHHHHHHHHHHhCCCC-ceeeecCCCC----CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 239 ----GYKPQEAVEVLEKLYEMGVT-PVLFEQPVHR----DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 239 ----~w~~~~A~~~~~~L~~~~l~-~~~iEeP~~~----~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
+|+.++|++++++|.+.... +.|||||++. +|+++++++++.+. +.+++||++||+++|.++++++++.+
T Consensus 84 ~~~~~~~~~~ai~~l~~L~~~~~~~~l~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~ 163 (251)
T d1kkoa1 84 GLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAG 163 (251)
T ss_dssp HHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCceeecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHHHHHHHHhC
Confidence 89999999999999865321 2499999974 56888999876432 24689999999999999999999999
Q ss_pred CCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc-cCCchHHHHHHHHHHHccCC
Q 014886 309 LADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 309 a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~-~~~es~ig~~a~~hlaaa~~ 362 (416)
++|++|+|++++| ++++++++++|+++|+++++| ++.||+++.++++|+|++..
T Consensus 164 a~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~ 219 (251)
T d1kkoa1 164 SCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAAR 219 (251)
T ss_dssp CCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcC
Confidence 9999999999998 999999999999999999988 58899999999999998754
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.95 E-value=3.3e-27 Score=198.24 Aligned_cols=123 Identities=21% Similarity=0.347 Sum_probs=111.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++.+++|+++||++|.++..+++.++|+|+| ||++||||+.+.+ .+++|+.+.+...+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~ 79 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhhhhcC
Confidence 89999999999999999999999999999999999998 5999999998854 4667887777666665 689999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+.+++.+++.+...++|+ +.|++||||||||++||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred cccHHHHHHHhhhhhhcc--chHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 999999999998877777 45799999999999999999999999997
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.95 E-value=1.5e-27 Score=200.41 Aligned_cols=123 Identities=26% Similarity=0.386 Sum_probs=111.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|+++||+++.++.+.++.++|+|+| ||.+||||+.+.+ .+++++.+.+...+++ +.|.|+|++
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~lig~~ 79 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999998 5999999998753 4677887776666665 589999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+.+++.+++.+...+.|+. .|++||||||||++||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 80 AFNVSGALQTMARAVTGNA--SAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTCHHHHHHHHHTTCSSCH--HHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccHHHHHHHhhhccccch--HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999999988777774 4799999999999999999999999997
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.94 E-value=1.6e-26 Score=194.06 Aligned_cols=123 Identities=26% Similarity=0.360 Sum_probs=109.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEecc--CCccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++||++||++|.++.++++.++|+|+|++|++||||+.+ .+.+++|+...++..+++ +.|.++|++
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l~g~~ 80 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 80 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchhcCCC
Confidence 89999999999999999999999999999999999999999999999864 456888988887777765 689999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+.+.+.+++.+.. +.++. .|++||||||||++||..|+|||+|||.
T Consensus 81 ~~~~~~i~~~~~~-~~~~~--~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 81 IRKPEEIQELFSW-IQGNE--MAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp ESSTTHHHHHHTT-SCSCH--HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred chhHHHHHHHhhh-ccCch--HHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999888876644 55664 4799999999999999999999999984
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1.3e-25 Score=185.26 Aligned_cols=115 Identities=26% Similarity=0.297 Sum_probs=99.9
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.. ......+ .+.+.|.++|+++.+
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~~----~~~~~~i--~~~l~~~l~g~~~~~ 74 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWL----PALHVGF--TKRIIPFLLGKQAGS 74 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSCH----HHHHHHH--HHTHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCch----hhhHHHH--HHHHhhhhcccChhh
Confidence 8999999999999999999999999999999999999999999999997642 1111122 244789999999999
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++.+|+.+... + ..|++||||||||+.||..|+|||+||||
T Consensus 75 ~~~~~~~~~~~---~--~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 75 RLSLVRTIQKW---H--QRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHH---C--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHh---h--hHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999988753 2 45899999999999999999999999997
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=6.9e-25 Score=183.37 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=96.9
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESPA 123 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (416)
.|++|+++.+++|+++||+++.++.++++.++|||+|++|++||||+.+.+ .+..+........+.. +.+.+.++++
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLAA 81 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHTTSBT
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhcccccccch
Confidence 489999999999999999999999999999999999999999999998753 3445555544444443 5788999999
Q ss_pred CCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
.++..++..+.....++ ..|++||||||||++||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 82 DNINAAMLKLDKLAKGN--TFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred hhHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 99999998887776655 35799999999999999999999999997
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.92 E-value=1.6e-24 Score=181.07 Aligned_cols=122 Identities=24% Similarity=0.289 Sum_probs=104.8
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|+++||.+|.++.+.++.++|+|+|++|++||||+.+.+ .++.|+.......+.. +.+.+.+++
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTEA 80 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTSC
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccccccc
Confidence 8999999999999999999999999999999999999999999999998753 4566776666555544 568899999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG 170 (416)
+.+.+++++.+.. ..++. .|+|||||||||++||..|+|||+|||
T Consensus 81 ~~~~~~~~~~~~~-~~~~~--~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 81 IEQPQEVSTIFEE-VKGHW--MGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp CCSTHHHHHHGGG-SCSCH--HHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred cccHHHHHHHHhh-ccCcc--HHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 9998887776654 34443 479999999999999999999999998
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=2.9e-24 Score=180.47 Aligned_cols=126 Identities=24% Similarity=0.304 Sum_probs=100.0
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.|+|++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+..+.+... ..++.+.+.+.+.+ .
T Consensus 1 ~~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~ 76 (130)
T d2mnra2 1 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLK---QLLDDMAAMIVNEP-L 76 (130)
T ss_dssp CCBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSSGGGHHHHH---HHHHHHHHHHTTSB-S
T ss_pred CCEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecCcccchhHH---HHHHHHHHHhccCC-C
Confidence 3899999999999999999999999999999999999999999999999886544433322 22344677777654 4
Q ss_pred CHHHHHHHHHhhC--CCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc
Q 014886 125 ALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 174 (416)
Q Consensus 125 ~~~~~~~~l~~~~--~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~ 174 (416)
.....++.+.... .++ ....|++|||+||||++||..|+|||+||||+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~r 130 (130)
T d2mnra2 77 APVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANAR 130 (130)
T ss_dssp CHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCC
T ss_pred CHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCC
Confidence 5666676665532 122 2346899999999999999999999999999753
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=1.5e-24 Score=180.91 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=94.9
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++.+++|++.++..+ ++.++|+|+|++|++||||+.+.+....+ ......+.+.|.++|+++.+
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~------~~~iiV~i~td~Gi~G~Ge~~~~~~~~~~---~~~~~~~~~~~~lig~~~~~ 71 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAGAK---AGVGIIRDLAPLIVGEDPLN 71 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTTHH---HHHHHHHHHGGGTTTSCTTC
T ss_pred CEEeEEEEEEEcCCCCCCcccc------ceeEEEEEEECCCCEEEEeeccccccchH---HHHHHHHHHHhhhcccccch
Confidence 8999999999999998876544 46799999999999999999765432222 22333466899999999999
Q ss_pred HHHHHHHHHhhC-----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 126 LGSVFGVVAGLL-----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 126 ~~~~~~~l~~~~-----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++.+|+.+.+.. .+.....|+||||+||||++||..|+|||+||||
T Consensus 72 ~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 72 IEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp HHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 999999986532 1222346899999999999999999999999997
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.91 E-value=4.2e-24 Score=178.12 Aligned_cols=122 Identities=24% Similarity=0.364 Sum_probs=105.9
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
|||++|+++++++|+++||.++.++.++++.++|+|+|++| +||||+.+. +.+++|+.......+.. +.+.+++.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhhcCCC
Confidence 89999999999999999999999999999999999999877 799999875 45778887766665554 678889999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+.+.+.+++.+.. ..++ ..|++||||||||++||..|+|||+|||.
T Consensus 80 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred ccCHHHHHHHHHH-ccCC--cHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999998887754 4555 35799999999999999999999999983
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.91 E-value=3.6e-24 Score=179.47 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=97.8
Q ss_pred EEEeEEEEEEEEeccccceeecCc----eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATS----RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~----~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (416)
|||++|+++.+++|++.|+..+.. ..+..+.++|+|+|++|++||||+.+.. ++.+ .+. +.+.|.|+|+
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~-~~~~----~i~--~~l~~~lig~ 73 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEI-VRPH----VIE--KFVKKVLIGE 73 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGG-GCHH----HHH--HTHHHHHTTS
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHH-HHHH----HHH--HHHHHHHhhc
Confidence 899999999999999999988853 4677889999999999999999987532 2221 211 3367999999
Q ss_pred CCCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 122 PAMALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++.+.+.+|+.+.... .+.....|++||||||||++||.+|+|||+||||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 74 DHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp BTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred CcchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999998886532 1222356899999999999999999999999997
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.90 E-value=4.9e-24 Score=178.51 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=95.4
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCc--cCcccHHHHHHHHHH-HHHHHhCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKASE-ACEVLKES 121 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~--~~~e~~~~~~~~~~~-~~~~l~g~ 121 (416)
+|||++|+++.+++||++||.+|.++.+.++.++|++++ +|.+||||+.+.+. ++.+........+.. +.|.+.|+
T Consensus 2 m~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (127)
T d1r0ma2 2 MFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQ 80 (127)
T ss_dssp CEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTC
T ss_pred CceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccccccC
Confidence 689999999999999999999999999999999999986 59999999987543 666776655555444 67899999
Q ss_pred CCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++.++++++..+.. +.++ +.|++||||||||+.||..|+|||+||||
T Consensus 81 ~~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 81 TFANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp EESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred ChhhHHHHhhhhcc-cCCc--hHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 99999988877654 3444 45799999999999999999999999998
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=1.2e-22 Score=171.42 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=98.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
.||++||+++++.|++.++..+....+.++.++|||+|++|++||||+.+.. .. ...++.+.+.++|+++.+
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~~-----~~---~~~~~~~~~~~ig~~~~~ 74 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGE-----GI---RKTLEDARHLLINQSIGN 74 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HH---HHHHHTTHHHHBTCBGGG
T ss_pred CEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCcH-----hH---HHHHHHhhhhhcCcChHH
Confidence 4899999999999999999999888888899999999999999999997532 11 122355789999999999
Q ss_pred HHHHHHHHHhhCCCC-------------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 014886 126 LGSVFGVVAGLLPGH-------------QFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~-------------~~~~a~said~ALwDl~gk~~g~pl~~LLG 170 (416)
++.+++.+.+..... ....|+|||||||||++||.+|+|||+|||
T Consensus 75 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 75 YQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp HHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred HHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 999999987643110 134689999999999999999999999998
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.6e-22 Score=168.03 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=97.1
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.++|++|+++++..|.+.++..+....+....++|||+|++|++||||+.+.+ ... ..++.+.|.++|+++.
T Consensus 3 ~p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~~-----~~~---~~~~~~~~~l~g~~~~ 74 (133)
T d1jdfa2 3 TPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGE-----KIR---KTLEDAIPLVVGKTLG 74 (133)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HHH---HHHHHHHHHHTTCBGG
T ss_pred CCeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCcH-----HHH---HHHHhhhhhhcCCChh
Confidence 46999999999999999999988776677788999999999999999997532 111 2235678999999999
Q ss_pred CHHHHHHHHHhhCC-------------CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 014886 125 ALGSVFGVVAGLLP-------------GHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (416)
Q Consensus 125 ~~~~~~~~l~~~~~-------------g~~~~~a~said~ALwDl~gk~~g~pl~~LLG 170 (416)
+++.+++.+..... ......|+|||||||||++||.+|+|||+|||
T Consensus 75 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 75 EYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp GHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred hHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 99999988865321 11234689999999999999999999999998
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.85 E-value=6.3e-22 Score=168.68 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=81.9
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECC-----CceEEEEeccCCccCcccHHHHHHHHHHHHHHHhC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-----GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~-----G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (416)
|||++|+ .+++|++.||+++.+++++++.++|+|+||+ |.+||||+.+.+....+ .. .+.+.|.++|
T Consensus 1 mkIvdi~--~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~~----~~--~~~~~~~lig 72 (140)
T d1tzza2 1 VRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGG----LI--RERFASRILE 72 (140)
T ss_dssp CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCHH----HH--HHTHHHHHHT
T ss_pred CeEEEEE--EEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCchhHHHH----HH--HHHHHHHHhc
Confidence 7886665 6889999999999999999999999999984 45788988764432221 11 1346788888
Q ss_pred CCC----------CCHHHHHHHHHhhC-CC-C-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC
Q 014886 121 SPA----------MALGSVFGVVAGLL-PG-H-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172 (416)
Q Consensus 121 ~~~----------~~~~~~~~~l~~~~-~g-~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~ 172 (416)
+++ .+.+.+|+.+.+.. .+ + ....|+|||||||||++||.+|+|||+||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 73 ADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp SCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred ccHhhHhhhcccccChHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 765 35577888876532 12 2 22468999999999999999999999999985
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.81 E-value=1.7e-20 Score=159.52 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=91.9
Q ss_pred EEeEEEEEEEEeccccceeec--CceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a--~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
.|++|+++.+++|+.++...+ ..+.+....++|+|+|++|..|+||+...+...+. .......+.+.|.++|+++.
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~~~~~~--~~~~~~~~~l~p~liG~~~~ 79 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGN--DVQTAAVAALAEHVVGLSVD 79 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEECSTTH--HHHHHHHHTTHHHHTTCBHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEecCCChH--HHHHHHHHHHHHHhhCCCcc
Confidence 499999999999999998543 44555667899999999988888887654322122 22222235589999999999
Q ss_pred CHHHHHHHHHhhCC---------CC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC
Q 014886 125 ALGSVFGVVAGLLP---------GH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172 (416)
Q Consensus 125 ~~~~~~~~l~~~~~---------g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~ 172 (416)
+++.+|+.+++.+. +. ....|+||||+||||++||.+|+|||+|||+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~~ 138 (139)
T d1yeya2 80 KVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL 138 (139)
T ss_dssp HHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS
T ss_pred cHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhhc
Confidence 99888888765321 11 12358999999999999999999999999873
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=7.9e-09 Score=96.28 Aligned_cols=116 Identities=21% Similarity=0.395 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 240 YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 240 w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.+.+|-+++... +++|++ .+||+|++.+|++++.++++ ..+.-|..|. .+++...+++.++.++++.+.+|+
T Consensus 132 ~s~~elid~y~~li~~YPI--isIEDp~~e~D~~gw~~lt~----~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~ 205 (295)
T d2al1a1 132 LTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKV 205 (295)
T ss_dssp BCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH
T ss_pred cchHHHHHHHHHHHHhCCE--EEecCCcCccchHHHHHHhh----ccCceeecchhhcccchhhhcchhhhcccceeecc
Confidence 466777776554 478986 69999999999999999985 4567788876 466888899999999999999999
Q ss_pred CCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 318 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 318 ~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
..+| ++++++.+.+|+++|..+++++.. ||. -...+|||.+++.
T Consensus 206 NQiGTvtEt~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~~a 251 (295)
T d2al1a1 206 NQIGTLSESIKAAQDSFAAGWGVMVSHRSGETE--DTFIADLVVGLRT 251 (295)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHhcCCeeecccCCCCcC--cchhhhhhHhcCC
Confidence 9999 999999999999999999987754 332 2355688887754
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=98.88 E-value=6.5e-09 Score=96.89 Aligned_cols=117 Identities=19% Similarity=0.386 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHH-HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeC
Q 014886 239 GYKPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 239 ~w~~~~A~~~~~-~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k 316 (416)
..+.+|-+++.. .+++|++ .+||+|+..+||+++++|++ +.++.|..|. .+++..-+++.++.++++.+.+|
T Consensus 130 ~~t~delid~y~~l~~kYPI--isIEDP~~E~D~~gw~~lt~----~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK 203 (294)
T d2akza1 130 YITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKFTA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLK 203 (294)
T ss_dssp CBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred eecHHHHHHHHHHHhcccCe--EEEeCCCcccchhhHHHHHH----hcCcEEEccccccccHHHHHHHHhcCcCccceec
Confidence 357788777665 4578986 69999999999999999986 5677888765 57788889999999999999999
Q ss_pred CCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 317 LAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 317 ~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+..+| ++++++.+.+|+++|+.+++++.. ||. -...+|||.+++.
T Consensus 204 ~NQiGTltEt~ea~~la~~~g~~~ivShRsGETe--D~~iaDLAVg~~a 250 (294)
T d2akza1 204 VNQIGSVTEAIQACKLAQENGWGVMVSHRSGETE--DTFIADLVVGLCT 250 (294)
T ss_dssp HHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHHcCCcEEeeCCCCCcC--cchHhHHHHhcCC
Confidence 99999 999999999999999999987754 332 2345677777653
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=3.4e-08 Score=91.66 Aligned_cols=119 Identities=20% Similarity=0.368 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeC
Q 014886 239 GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 239 ~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k 316 (416)
..+.++-+.+...| ++|++ .+||+|+..+||++++.|++.+ ...+-|..|.- +++..-+++.++.++++.+.+|
T Consensus 127 ~~t~~eli~~y~~l~~~yPI--isIEDP~~edD~~gw~~lt~~~--g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK 202 (292)
T d2fyma1 127 AFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTKVL--GDKIQLVGDDLFVTNTKILKEGIEKGIANSILIK 202 (292)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred cccHHHHHHHHHHHHhcCce--EEEeCCcccccHHHHHHHHHhc--CCcEEEeCCchhccChHHHHhhhhcCCccceeec
Confidence 45888888877555 77885 6999999999999999998743 23577777655 6677788999999999999999
Q ss_pred CCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 317 LAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 317 ~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+..+| ++++++.+.+|+++|..+++++.. ||. -...+|||.+++.
T Consensus 203 ~NQiGTvTet~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~ga 249 (292)
T d2fyma1 203 FNQIGSLTETLAAIKMAKDAGYTAVISHRSGETE--DATIADLAVGTAA 249 (292)
T ss_dssp GGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCcc--cchHHHHHHHhCC
Confidence 99999 999999999999999999987754 332 2356688887754
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.78 E-value=2.3e-08 Score=93.13 Aligned_cols=117 Identities=19% Similarity=0.351 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+|-+++...| ++|++ .+||+|+..+||+++++|++.+ ...+-|..|. .++++.-+++.++.++++.+.+|+.
T Consensus 133 s~~elid~y~~l~~~YPI--isIEDP~~e~D~~gw~~lt~~l--g~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTERL--GKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCe--EEEecCcccccHHHHHHHHHHh--CCceEEEcCcccccChhHHHhhhhhcccccceeccc
Confidence 667777765555 78885 6999999999999999998744 2357777765 5677788899999999999999999
Q ss_pred CCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 319 KVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 319 k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
.+| ++++++.+.+|+++|..+++++.. ||. -...+|||.+++.
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGETe--D~~iadLAVg~~a 253 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGETE--DSTIADIAVATNA 253 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCCc--cchhHHHHHHcCC
Confidence 999 999999999999999999987754 332 2355688887754
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.75 E-value=3e-08 Score=92.25 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEe
Q 014886 238 EGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~ 315 (416)
...|.+|-+++...| ++|++ .+||+|+..+||++++++++.+ ...+-|..|.- ++++..+++.++.++++.+.+
T Consensus 129 ~~ls~~elid~y~~l~~~YPI--isIEDp~~e~D~~gw~~lt~~~--g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLI 204 (291)
T d2ptza1 129 TWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGITEAL--KGKTQIVGDDLTVTNTERIKMAIEKKACNSLLL 204 (291)
T ss_dssp CEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHT--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred chhhHHHHHHHHHHHhhccce--eEecCCccccchhHHHHhhhcc--CceEEEecCcccccchHHHhhccccCCccceEe
Confidence 346888888766665 78885 6999999999999999998743 22477776655 677888999999999999999
Q ss_pred CCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 316 KLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 316 k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
|+..+| ++++++.+.+|+++|..+++++.. ||. -...+|||.++..
T Consensus 205 K~NQiGTvtEt~ea~~la~~~g~~~iiShRSGETe--D~~iaDLAVg~~a 252 (291)
T d2ptza1 205 KINQIGTISEAIASSKLCMENGWSVMVSHRSGETE--DTYIADLVVALGS 252 (291)
T ss_dssp CHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHHTC
T ss_pred cchhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCcC--cchHHHHHHHhCC
Confidence 999999 999999999999999999987753 332 2355677777654
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.52 E-value=9.2e-07 Score=72.60 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=83.3
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (416)
+|++|..+.+ -.|+|. +++-|+|.+++|..|.+-++.-- .|.+-.+..++..
T Consensus 3 ~I~~v~~r~I--------lDSRG~----PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~ 70 (137)
T d1w6ta2 3 IITDVYAREV--------LDSRGN----PTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDN 70 (137)
T ss_dssp BEEEEEEEEE--------ECTTSC----EEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred ceeEEEEEEE--------EcCCCC----EEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHH
Confidence 6888887765 344443 78999999999999988876410 1112234555665
Q ss_pred HHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++. +.|.|+|+++.+...+-+.|.... ..+..+.+.-|+.+|++.+.++..|+|||++|||
T Consensus 71 in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 71 VNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 654 789999999999988877765432 1222356788999999999999999999999998
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=5.6e-06 Score=68.14 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=83.2
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (416)
||++|..+.+ -.|+|. +++-|+|.+++|.+|.+-++.-- .|.+..+..++..
T Consensus 2 kI~~v~~r~I--------lDSRG~----PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~ 69 (139)
T d2fyma2 2 KIVKIIGREI--------IDSRGN----PTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69 (139)
T ss_dssp BEEEEEEEEE--------ECTTSC----EEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eeEEEEEEEE--------EcCCCC----eEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHH
Confidence 6888887765 344443 78899999999999999876410 1223345555555
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 111 AS-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 111 ~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
++ .+.|.|+|+++.+.+.+-+.|...- .....+.+.-|+.+|++.+.++..++|||++|++
T Consensus 70 in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d2fyma2 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAE 135 (139)
T ss_dssp HHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHh
Confidence 55 4789999999999988877775432 1122256789999999999999999999999975
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=3.3e-06 Score=69.57 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=80.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC-----------------ccCcccHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP-----------------HVTAEDQQTAM 108 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~-----------------~~~~e~~~~~~ 108 (416)
|+|++|..+.+ -.|+|. +++-|+|.+++|+.+ +- .|.. .|.+..+..++
T Consensus 2 M~I~~i~~r~I--------lDSRG~----PTvevev~~~~g~~r-a~-~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av 67 (139)
T d2ptza2 2 MTIQKVHGREV--------LDSRGN----PTVEVEVTTEKGVFR-SA-VPSGASTGVYEACELRDGDKKRYVGKGCLQAV 67 (139)
T ss_dssp TSCCEEEEEEE--------ECTTSC----EEEEEEEEETTEEEE-EE-CCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHH
T ss_pred CeEEEEEEEEE--------EcCCCC----eEEEEEEEECCCcee-Ee-ccccccccchhhhhcCCCcccccccchHHHHH
Confidence 78999987765 345443 788899999988542 33 3321 12223344555
Q ss_pred HHHH-HHHHHHhCCCCCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 109 VKAS-EACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 109 ~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
..++ .+.|.|+|+++.+.+.+.+.|..... ....+.+.-|+.+|++.+.++..++|||++|++
T Consensus 68 ~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 68 KNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 5554 47899999999999988888765421 122356889999999999999999999999974
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=9.4e-05 Score=60.72 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred EeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHH
Q 014886 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKA 111 (416)
Q Consensus 48 I~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~ 111 (416)
|++|..+.+ -.|+|. +++-|+|.|++| .|.+-++.- . .|.+..+..++..+
T Consensus 2 I~~v~ar~I--------lDSRG~----PTvev~v~~~~g-~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~ni 68 (141)
T d2al1a2 2 VSKVYARSV--------YDSRGN----PTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNV 68 (141)
T ss_dssp CCEEEEEEE--------ECTTSC----EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred cCEEEEEEE--------ECCCCC----cEEEEEEEECCC-eEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHH
Confidence 456665554 234443 788899999988 576654321 0 11122344555555
Q ss_pred HH-HHHHHh--CCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 112 SE-ACEVLK--ESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
+. +.|.|+ |.++.+...+-+.|..+- .....+.+.-|+.||++.+.++..|+|||++|++
T Consensus 69 n~~i~~~Li~~g~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~ 135 (141)
T d2al1a2 69 NDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLAD 135 (141)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhHHHHhhcCCchhhHHHHHHHHHHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 54 788888 788888888777765431 1112256789999999999999999999999975
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=97.60 E-value=0.00043 Score=56.34 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=65.0
Q ss_pred eEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHHHH-HHHHHh--CCCCCCHHHHHHHHHh
Q 014886 75 ENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKASE-ACEVLK--ESPAMALGSVFGVVAG 135 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~~ 135 (416)
+++-|+|.+++| +|.+-++.- . .|.+..+..++..++. +.|.|+ |.++.+...+.+.|..
T Consensus 17 PTVev~v~~~~~-~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g~~~~dq~~iD~~Li~ 95 (139)
T d1pdza2 17 PTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCK 95 (139)
T ss_dssp EEEEEEEEETTE-EEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred cEEEEEEEECCC-eEEEecccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcCccccchhhhHHHHHh
Confidence 688899999765 455543321 0 1222234445555543 788887 5778888877766654
Q ss_pred hC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 136 LL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 136 ~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
.- .....+.+.-|+.||++.+.++..|+|||++|++
T Consensus 96 lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 96 LDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 31 1122256789999999999999999999999975
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=97.54 E-value=0.00053 Score=55.97 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=67.1
Q ss_pred eEEEEEEEECCCceEEEEeccCCc-----------------cCcccHHHHHHHHHH-HHHHHh--CCCCCCHHHHHHHHH
Q 014886 75 ENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAMVKASE-ACEVLK--ESPAMALGSVFGVVA 134 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~~~~~-----------------~~~e~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~ 134 (416)
+++-|+|.+++| +|.+-++. .. |.+..+..++..++. +.|.|+ |.++.+...+.+.|.
T Consensus 17 PTvevev~~~~g-~~~a~~Ps-GaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g~~~~dQ~~iD~~L~ 94 (139)
T d2akza2 17 PTVEVDLYTAKG-LFRAAVPS-GASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLML 94 (139)
T ss_dssp EEEEEEEEETTE-EEEEECCB-CSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHHH
T ss_pred eEEEEEEEECCC-eEEEeccc-ccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 688899999876 35544422 11 112234556666654 788887 899999888887775
Q ss_pred hhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 014886 135 GLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (416)
Q Consensus 135 ~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg 171 (416)
..- .....+.+.-|+.+|++.+.++..++|||++|++
T Consensus 95 ~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 95 ELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 532 1122256889999999999999999999999864
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.93 E-value=0.0042 Score=50.44 Aligned_cols=96 Identities=16% Similarity=0.258 Sum_probs=68.1
Q ss_pred eeEEEEEEEECCCceEEEEeccCC--ccCc-c---cHHHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhh-CCCCh-hhH
Q 014886 74 VENVAIRIELSNGCVGWGEAPVLP--HVTA-E---DQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL-LPGHQ-FAS 144 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~~--~~~~-e---~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~-~~g~~-~~~ 144 (416)
-+.+.|.+..+||.+.||.|...- +..+ + .....+..++ .+.|+|+|++......+...+... ..|.. ..+
T Consensus 50 gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~~g~~LHtA 129 (160)
T d1kcza2 50 GESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTA 129 (160)
T ss_dssp CCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEECCHH
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCcchhHH
Confidence 468899999999999999998631 1111 1 1122333343 478999999999998888877653 23322 246
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 145 VRAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 145 a~said~ALwDl~gk~~g~pl~~LL 169 (416)
.+-+|..||+|+.+|+.+.-..+.+
T Consensus 130 iRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 130 IRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 8899999999999998877655544
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.01 Score=55.21 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEeC----C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA----N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L--~vDa----N 237 (416)
..+.|+.+.+.||..|-|+.+. ++ .--++.|++||++ ++++.+ ++-+ .
T Consensus 143 f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~ 222 (330)
T d1ps9a1 143 FARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVE 222 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCST
T ss_pred HHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccccc
Confidence 4566777788999999999751 22 2345678899997 777533 3322 4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCce-----eeecCCCC--CC-H-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPV-----LFEQPVHR--DD-W-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~-----~iEeP~~~--~d-~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
++++.++++++++.|++.++... |.|...+. .. . ..+..+.+.+++.+++||...=.+++++...++++.|
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g 302 (330)
T d1ps9a1 223 DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRG 302 (330)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCC
Confidence 67899999999999998765310 22222211 10 0 1122333344567899999988899999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|+|.+
T Consensus 303 ~~D~V~~ 309 (330)
T d1ps9a1 303 DADMVSM 309 (330)
T ss_dssp SCSEEEE
T ss_pred CcchhHh
Confidence 9999855
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.83 E-value=0.0053 Score=49.83 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=67.3
Q ss_pred eeEEEEEEEECCCceEEEEeccC---------CccCcccHHHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhh-CCCCh-
Q 014886 74 VENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL-LPGHQ- 141 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~---------~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~-~~g~~- 141 (416)
-+.+.|.+..+||.+.||.|... |.+..+ ..+..++ .+.|+|+|++.....+....+... ..|..
T Consensus 50 gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~---~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~~g~~L 126 (160)
T d1kkoa2 50 GECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAE---HFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLL 126 (160)
T ss_dssp EEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHH---HHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEEC
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHH---HHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCCch
Confidence 46889999999999999999863 222222 2333343 478999999999988877777643 23322
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 142 FASVRAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 142 ~~~a~said~ALwDl~gk~~g~pl~~LL 169 (416)
..+.+-+|..||+|+.+|....-..+.+
T Consensus 127 HtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 127 HTAVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 2467899999999999998877655544
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.40 E-value=0.034 Score=51.57 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC----CC
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN----EG 239 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~~L~vDaN----~~ 239 (416)
..+.|+.+.+.||..+.|+.+. +++ --++.|++||++ +..+.+++-++ ++
T Consensus 145 f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g 224 (337)
T d1z41a1 145 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKG 224 (337)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTS
T ss_pred HHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCc
Confidence 4556677788999999999751 222 235678899997 45555666544 46
Q ss_pred CCHHHHHHHHHHHHhCCCCceeee-------cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFE-------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
++.++.+.+++.|++.++. +++ +|-......-...+.+..|+.+++||..-=.+.+++...++++.|.+|+
T Consensus 225 ~~~~~~~~~~~~l~~~g~d--~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~ 302 (337)
T d1z41a1 225 LDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADL 302 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSE
T ss_pred cchhhhHHHHHHHHHcCCc--ccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcce
Confidence 7899999999999998764 322 2211000001112222334578899998888999999999999999999
Q ss_pred EEe
Q 014886 313 INI 315 (416)
Q Consensus 313 v~~ 315 (416)
|.+
T Consensus 303 V~~ 305 (337)
T d1z41a1 303 IFI 305 (337)
T ss_dssp EEE
T ss_pred ehh
Confidence 854
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.069 Score=48.73 Aligned_cols=137 Identities=20% Similarity=0.332 Sum_probs=98.1
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+...+...+|+.+.+.+ +..+.||..|-|.+| .+++.-.+.|+++++.. ++.+.+=-.-+|
T Consensus 56 p~~~Ql~g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~ 133 (305)
T d1vhna_ 56 NVAVQIFGSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLGW 133 (305)
T ss_dssp TEEEEEECSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESCS
T ss_pred CeEEEEeccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-ccccccccccCc
Confidence 455567778999887755 567889999999998 25667777788888764 344555444567
Q ss_pred CHHHHHHHHHHHHhCCCCceee-----ecCC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLF-----EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i-----EeP~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+.++..++++.+++.|+....| +|.. .+-||+..+++. ..+||...=.+.+.+|+.+.++.-.+|.++
T Consensus 134 d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~------~~ipvi~NGdI~s~~d~~~~l~~tg~dgVM 207 (305)
T d1vhna_ 134 EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE------KRIPTFVSGDIFTPEDAKRALEESGCDGLL 207 (305)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC------CSSCEEEESSCCSHHHHHHHHHHHCCSEEE
T ss_pred ccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh------hhhhhhcccccccHHHHHHHHHhcCCCeEe
Confidence 6666778999999988752222 3332 244677776663 369999988999999999999765589999
Q ss_pred eCCCCCc
Q 014886 315 IKLAKVG 321 (416)
Q Consensus 315 ~k~~k~G 321 (416)
+=-+-.|
T Consensus 208 iGRgal~ 214 (305)
T d1vhna_ 208 VARGAIG 214 (305)
T ss_dssp ESGGGTT
T ss_pred hhHHHHH
Confidence 8554444
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=94.39 E-value=0.19 Score=46.77 Aligned_cols=119 Identities=14% Similarity=0.270 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeC------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDA------ 236 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~-~~L~vDa------ 236 (416)
..+.|+.+.+.||..|-|+.+. +++ --.+.|++||++ +++ +.+++-.
T Consensus 162 f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~ 241 (363)
T d1vyra_ 162 FRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN 241 (363)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccc
Confidence 4666778889999999999751 222 356778999997 555 3344432
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCceeeecCCC------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 237 --NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 237 --N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.++++.++++.+++.|++.++. ||+=-.. +.. ..+++ ..+..+.+|++..= ..+++...++++.|
T Consensus 242 ~~~gg~~~~e~~~~~~~l~~~gvd--~i~vs~~~~~~~~~~~-~~~~~---~~~~~~~~~vi~~G-~~t~~~ae~~l~~G 314 (363)
T d1vyra_ 242 VDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYS-EAFRQ---KVRERFHGVIIGAG-AYTAEKAEDLIGKG 314 (363)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCC-HHHHH---HHHHHCCSEEEEES-SCCHHHHHHHHHTT
T ss_pred hhhcccchHHHHHHHHHHHhcCCe--eeecccCCccCCcccc-HHHHH---HHHHhcCceEEecC-CCCHHHHHHHHHCC
Confidence 2467789999999999999874 6542211 111 22222 22346778888764 45899999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|+|.+
T Consensus 315 ~~DlV~~ 321 (363)
T d1vyra_ 315 LIDAVAF 321 (363)
T ss_dssp SCSEEEE
T ss_pred Ccceehh
Confidence 9999854
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.26 E-value=0.57 Score=42.88 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCcE--EEE--e-CCC
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSS--FIL--D-ANE 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~~--L~v--D-aN~ 238 (416)
.++.|+.+.+.||..|-|+.+. +++ --++.+++||++ ++++. +++ | ..+
T Consensus 151 f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~ 230 (340)
T d1djqa1 151 YVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYG 230 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSC
T ss_pred HHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccccc
Confidence 4556777888999999999851 222 245678899987 77743 333 2 222
Q ss_pred --CCCHHHHHHHHHHHHhCCCCc---------eeeecCCCCCCH--HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHH
Q 014886 239 --GYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 239 --~w~~~~A~~~~~~L~~~~l~~---------~~iEeP~~~~d~--~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i 305 (416)
..+.+.....+..+.+.++.. .|.+++-+.... .....+.+..|..+++||.+-=.+.++++..+++
T Consensus 231 ~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l 310 (340)
T d1djqa1 231 PGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIV 310 (340)
T ss_dssp TTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH
Confidence 122333334444555544321 122333222110 0011122233457889999777899999999999
Q ss_pred HcCCCCEEEe
Q 014886 306 KGNLADVINI 315 (416)
Q Consensus 306 ~~~a~d~v~~ 315 (416)
+.|.+|+|.+
T Consensus 311 ~~G~aDlV~~ 320 (340)
T d1djqa1 311 TKGYADIIGC 320 (340)
T ss_dssp HTTSCSBEEE
T ss_pred HCCCccchhh
Confidence 9999999854
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=92.36 E-value=0.47 Score=40.52 Aligned_cols=97 Identities=10% Similarity=0.168 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++.++++.|-+.++. .||=.+...+ ++.++++++ +..++-|-+| ++.+.++++++++.|+ +++.- |
T Consensus 24 ~~~~~~~~~~al~~~Gi~--~iEitl~~~~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~FivS-P-- 93 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLS--VAEITFRSEAAADAIRLLRA---NRPDFLIAAG-TVLTAEQVVLAKSSGA-DFVVT-P-- 93 (212)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH---HCTTCEEEEE-SCCSHHHHHHHHHHTC-SEEEC-S--
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHh---cCCCceEeee-ecccHHHHHHHHhhCC-cEEEC-C--
Confidence 578899999999999986 9999997654 333444443 2446777776 7889999999999994 77632 2
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
|+. ..+++.|++++++++||+++-|.+-
T Consensus 94 -~~~--~~v~~~a~~~~i~~iPGv~TpsEi~ 121 (212)
T d1vhca_ 94 -GLN--PKIVKLCQDLNFPITPGVNNPMAIE 121 (212)
T ss_dssp -SCC--HHHHHHHHHTTCCEECEECSHHHHH
T ss_pred -CCC--HHHHHHHHhcCCCccCCcCCHHHHH
Confidence 222 3678999999999999998755543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.59 Score=39.91 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.++++.+++.|-+.|+. .||=++...+ ++.++.+++ +.-++-|-+| ++.+.+++.++++.|+ +++.--
T Consensus 25 ~~~~a~~~~~al~~~Gi~--~iEitl~tp~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~FivSP--- 94 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVR--VLNVTLRTECAVDAIRAIAK---EVPEAIVGAG-TVLNPQQLAEVTEAGA-QFAISP--- 94 (213)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEESCSTTHHHHHHHHHH---HCTTSEEEEE-SCCSHHHHHHHHHHTC-SCEEES---
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---HCCCCeeecc-ccccHHHHHHHHHCCC-cEEECC---
Confidence 789999999999999986 9999997654 344455543 2345666665 8899999999999995 665321
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
|+ -..++..|+++|++++||+++-|-+-
T Consensus 95 -~~--~~~v~~~a~~~~i~~iPGv~TpsEi~ 122 (213)
T d1wbha1 95 -GL--TEPLLKAATEGTIPLIPGISTVSELM 122 (213)
T ss_dssp -SC--CHHHHHHHHHSSSCEEEEESSHHHHH
T ss_pred -CC--CHHHHHHHHhcCCCccCCcCCHHHHH
Confidence 21 14578999999999999998766544
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.07 E-value=1.1 Score=41.51 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc-EEEEeC----C
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS-SFILDA----N 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~-~L~vDa----N 237 (416)
+..+.|+++++.||..|-|+.+. ++ .--++.|++||++ +++. .+++-. +
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~ 243 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 243 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecccc
Confidence 34666788889999999999861 22 2346678999997 6654 333322 1
Q ss_pred C-CC--CHHHHHHHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 238 E-GY--KPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 238 ~-~w--~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+ .. ....+...++.|+..++....+.+|-.. .-..++++ .+++..++||..--.+ ++....++++.|.+
T Consensus 244 g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~a 319 (374)
T d1gwja_ 244 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFRE---QMRQRFKGGLIYCGNY-DAGRAQARLDDNTA 319 (374)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHH---HHHHHCCSEEEEESSC-CHHHHHHHHHTTSC
T ss_pred CCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHHH---HHHHHcCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 1 11 2344566677788777653345666321 11122222 2234788999876666 78889999999999
Q ss_pred CEEEe
Q 014886 311 DVINI 315 (416)
Q Consensus 311 d~v~~ 315 (416)
|+|.+
T Consensus 320 DlV~~ 324 (374)
T d1gwja_ 320 DAVAF 324 (374)
T ss_dssp SEEEE
T ss_pred cEehh
Confidence 99854
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=88.91 E-value=0.94 Score=38.65 Aligned_cols=97 Identities=11% Similarity=0.191 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.++++++++.|-+.|+. .||=++...+ ++.++.+++ +.-++-|-+| ++.+.+++.++++.|+ +++.- |
T Consensus 27 ~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~Fivs-P-- 96 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLRE---QRPELCVGAG-TVLDRSMFAAVEAAGA-QFVVT-P-- 96 (216)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHH---HCTTSEEEEE-CCCSHHHHHHHHHHTC-SSEEC-S--
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---hCCCcceeee-eeecHHHHHHHHhCCC-CEEEC-C--
Confidence 479999999999999986 9999997543 333444443 2345777776 7889999999999996 65522 2
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
|+ ...+++.|+++|++++||+++-|-+-
T Consensus 97 -~~--~~~v~~~a~~~~i~~iPGv~TpsEi~ 124 (216)
T d1mxsa_ 97 -GI--TEDILEAGVDSEIPLLPGISTPSEIM 124 (216)
T ss_dssp -SC--CHHHHHHHHHCSSCEECEECSHHHHH
T ss_pred -CC--cHHHHHHHHhcCCCccCCcCCHHHHH
Confidence 21 24578899999999999998766543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=5.4 Score=33.57 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=101.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+...++++..+.++.+.+.|++.+-|-... ..-.+.++.+++.+|++ .+=+-.-.|.+++.+. .+.|.+ |
T Consensus 21 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t--p~a~~~I~~l~~~~p~~--~vGaGTV~~~~~~~~a----~~aGa~--F 90 (213)
T d1wbha1 21 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEA--IVGAGTVLNPQQLAEV----TEAGAQ--F 90 (213)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTS--EEEEESCCSHHHHHHH----HHHTCS--C
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCC--eeeccccccHHHHHHH----HHCCCc--E
Confidence 445688888999999999999999998853 34577888899988874 5668888899987554 445654 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHH-HHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~-i~~~A~~~gi~~ 339 (416)
+=-|.-..++ ++... +.++|..-| +.|+.++..+++.| ++++.+=|.. .|....++ +.... -++++
T Consensus 91 ivSP~~~~~v--~~~a~-----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~~ 158 (213)
T d1wbha1 91 AISPGLTEPL--LKAAT-----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQAIAGPF--SQVRF 158 (213)
T ss_dssp EEESSCCHHH--HHHHH-----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTC--TTCEE
T ss_pred EECCCCCHHH--HHHHH-----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccchhcChHHHHHHhcCcc--cCCce
Confidence 8888764433 33222 457888875 67899999999998 6999888875 47444333 22222 36788
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+.+
T Consensus 159 ~ptGGV 164 (213)
T d1wbha1 159 CPTGGI 164 (213)
T ss_dssp EEBSSC
T ss_pred eeeCCC
Confidence 886544
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=87.62 E-value=1.9 Score=36.16 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++..+++.|-+.++. ++|=.+...+. +.+++++.. ...++-|-+| ++.+.++++.+++.|+ +++. -+
T Consensus 19 ~~~~a~~~~~al~~~Gi~--~iEitlr~p~a~~~i~~l~~~--~~~~~~vGaG-TV~~~~~~~~a~~aGa-~fiv-sP-- 89 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFL--KEKGAIIGAG-TVTSVEQCRKAVESGA-EFIV-SP-- 89 (202)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHH--HHTTCEEEEE-SCCSHHHHHHHHHHTC-SEEE-CS--
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHh--cCCCcEEEec-ccccHHHHHHHHhhcc-cEEe-CC--
Confidence 589999999999999986 99999876543 344555431 1234556555 7889999999999995 7653 22
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
|+. ..+++.|.++|+++++|.++-|.+-
T Consensus 90 -~~~--~~v~~~~~~~~i~~iPGv~TpsEi~ 117 (202)
T d1wa3a1 90 -HLD--EEISQFCKEKGVFYMPGVMTPTELV 117 (202)
T ss_dssp -SCC--HHHHHHHHHHTCEEECEECSHHHHH
T ss_pred -CCc--HHHHHHHHhcCCceeCCcCcHHHHH
Confidence 322 4678999999999999998655543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=87.14 E-value=3.3 Score=35.08 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=100.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+...++++..+.++.+.+.|++.+-|-... ..-.+.++.+++.+|+ +.+=+-.-.|.+++.+. .+.|.. |
T Consensus 23 l~~~~~~~a~~~~~al~~~Gi~~iEitl~~--p~a~~~i~~l~~~~p~--~~vGaGTV~~~~~~~~a----~~aGa~--F 92 (216)
T d1mxsa_ 23 ITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPE--LCVGAGTVLDRSMFAAV----EAAGAQ--F 92 (216)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTT--SEEEEECCCSHHHHHHH----HHHTCS--S
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCCC--cceeeeeeecHHHHHHH----HhCCCC--E
Confidence 345678888899999999999999988853 3567889999998887 56778888899886554 345653 7
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHH-HHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEI-IEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i-~~~A~~~gi~~ 339 (416)
+=-|....++ +. .+ .+.++|..-| +.|+.++..+++.| ++++.+=|.. .|....++. ... --++++
T Consensus 93 ivsP~~~~~v--~~-~a----~~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~~g~~~ikal~~p--~p~~~f 160 (216)
T d1mxsa_ 93 VVTPGITEDI--LE-AG----VDSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISGGVAAIKAFGGP--FGDIRF 160 (216)
T ss_dssp EECSSCCHHH--HH-HH----HHCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHTHHHHHHHHHTT--TTTCEE
T ss_pred EECCCCcHHH--HH-HH----HhcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccccccccHHHHHHHhcc--cccCce
Confidence 8788765443 22 22 2568888875 67899999999988 6999888864 453333332 222 236888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+.+
T Consensus 161 iptGGV 166 (216)
T d1mxsa_ 161 CPTGGV 166 (216)
T ss_dssp EEBSSC
T ss_pred eccCCC
Confidence 886544
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=85.67 E-value=9 Score=32.07 Aligned_cols=142 Identities=14% Similarity=0.265 Sum_probs=100.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+...+.++..+.++.+.+.|++.+-|-... ..-.+.++++++.+|+ +.+=+-.-.|.+++.+. .+.|.+ |
T Consensus 20 lr~~~~~~~~~~~~al~~~Gi~~iEitl~~--~~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~~~a----~~aGa~--F 89 (212)
T d1vhca_ 20 IALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPD--FLIAAGTVLTAEQVVLA----KSSGAD--F 89 (212)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT--CEEEEESCCSHHHHHHH----HHHTCS--E
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHhcCCC--ceEeeeecccHHHHHHH----HhhCCc--E
Confidence 344577788888888999999999999863 3456778888888887 56778888899987655 445654 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHH-HHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~-i~~~A~~~gi~~ 339 (416)
+=-|.-..++ . +.+. +.++|..-| +.|+.++..+++.| ++++.+=|.. +|....++ +... --++++
T Consensus 90 ivSP~~~~~v--~-~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vK~FPA~~~gG~~~lkal~~p--~p~~~~ 157 (212)
T d1vhca_ 90 VVTPGLNPKI--V-KLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKALLGP--YAQLQI 157 (212)
T ss_dssp EECSSCCHHH--H-HHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTT--TTTCEE
T ss_pred EECCCCCHHH--H-HHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEEccccccchHHHHHHHhcc--ccCCeE
Confidence 8888754333 2 3222 458888875 67899999999998 6999988864 66333333 2222 126888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+.+
T Consensus 158 ~ptGGV 163 (212)
T d1vhca_ 158 MPTGGI 163 (212)
T ss_dssp EEBSSC
T ss_pred EecCCC
Confidence 886644
|