Citrus Sinensis ID: 014887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccHccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHHHcccHHccHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccEEEccccccc
Coil and Loop (DISEMBL)
myhhhqnqgksmhsssrmpipterhlflqggsgpgdsglvlstdakprlkwtpdLHERFIEAVNQlggadkatpKTVMKlmgipgltlYHLKSHLQKYRlsknlhgqanignnkiahtgiggmkfkssgvgpvtvpgermpeanathmnnlsigpqpnkslhISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKelqgfcpqqpqanqptdcsmdscltscegsqkdqeihnggvrlrpyhgtptlepkeiveepmlQQTELKWRKdlkeskflssigkdrgpgelsigsgsfpagrfkasnedehfqdqtnkkpegaklenenllpeyrlpcfstkldlnahdhendvasgckqfdlngfswn
Flexible Loop (DISEMBL)
myhhhqnqgksmhsssRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNqlggadkatpKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKdqeihnggvrlrpyhgtptlepkeiveepmLQQTELKWRKDLKESKFlssigkdrgpgelsiGSGSFPAGRFKASNEDEHfqdqtnkkpegaklenenllpeYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Low Complexity Region (SEG)
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Disordered region (IsUnstruct)
***********************************************RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKF*****************************************IQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGF******************************************************************************************************************************LPEYRLPCFSTKLDLNAH*****VA*GCKQFD*******
Disordered Region (DISOPRED)
*************************************************KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK***********************************************ATH***************************************************************************************************************************************************************************************************************************************************D****************FDLNGFSW*
Disordered Region (DISEMBL)
*****************MPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQ***********DSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKAS**********NKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Disordered Region (DISPRO)
**********************************************PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL*******************************************************SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG*****************************************************************************************PKEIVEEPMLQQTELKWRKDLKESKFLSSIG*************************************************EYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSW*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEPKEIVEEPMLQQTELKWRKDLKESKFLSSIGKDRGPGELSIGSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDLNGFSWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.367	0.427	0.522	2e-42
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.326	0.329	0.447	2e-30
Q700D9	255	Putative Myb family trans	no	no	0.134	0.219	0.607	5e-14
Q9C616	388	Probable transcription fa	no	no	0.182	0.195	0.467	5e-13
Q93WJ9	403	Transcription repressor K	no	no	0.134	0.138	0.571	7e-13
Q0J235	532	Probable transcription fa	no	no	0.137	0.107	0.561	2e-12
Q9FJV5	276	Probable transcription fa	no	no	0.153	0.231	0.538	4e-12
Q9ZWJ9	664	Two-component response re	no	no	0.156	0.097	0.5	5e-12
Q941I2	322	Probable transcription fa	no	no	0.134	0.173	0.553	7e-12
Q940D0	690	Two-component response re	no	no	0.129	0.078	0.545	1e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 118/180 (65%), Gaps = 27/180 (15%)

Query: 35  GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
           GDSGLVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M++MG+ GLTLYHLKSH
Sbjct: 23  GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query: 95  LQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIG 154
           LQK+RL K  H +         H+   G +  +  +         M   N   MN     
Sbjct: 83  LQKFRLGKQPHKEYG------DHSTKEGSRASAMDIQRNVASSSGMMSRN---MN----- 128

Query: 155 PQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNL 214
                        +MQ+EVQRRLHEQLEVQRHLQLRIEAQGKY+Q++LE+A +TL  +N+
Sbjct: 129 -------------EMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENM 175

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 27/163 (16%)

Query: 45  AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104
           +K R++WTP+LHE F+EAVNQLGG+++ATPK V+KL+  PGLT+YH+KSHLQKYR ++  
Sbjct: 230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR-- 287

Query: 105 HGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHIS 164
                              K ++S      V GE   E   T + ++        S+ I+
Sbjct: 288 ------------------YKPETS-----EVTGEPQ-EKKMTSIEDIK-SLDMKTSVEIT 322

Query: 165 ETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQE 207
           + +++Q+EVQ+RLHEQLE+QR LQL+IE QG+YLQ + EK Q+
Sbjct: 323 QALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PRL+WTP+LH  F+ AV+ LGG  KATPK V+K+M + GLT+ H+KSHLQ YR S+
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLH- 105
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K    
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273

Query: 106 GQANIGNNKIAHTGIGG 122
             A+ G + +   G  G
Sbjct: 274 AAASSGQSDVYENGSSG 290

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103
           PR++WT  LH RF+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K+
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKS 381

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 38  GLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK 97
           GL  S  A PR++WT  LH  F+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ 
Sbjct: 98  GLKRSIRA-PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

Query: 98  YRLSK 102
           YR  K
Sbjct: 157 YRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 35  GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
           GD     S+  KPR+ W+ +LH++F+ AVNQLG  DKA PK ++++M +PGLT  ++ SH
Sbjct: 205 GDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASH 263

Query: 95  LQKYRL 100
           LQKYR+
Sbjct: 264 LQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 41/56 (73%)

Query: 47  PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           PR++WT  LH  F+ AV  LGG ++ATPK+V++LM +  LTL H+KSHLQ YR  K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
           KPR+ W+ +LH++F+ AVNQLG  +KA PK +++LM +PGLT  ++ SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
224125896	427	predicted protein [Populus trichocarpa]	0.961	0.936	0.726	1e-174
255568946	419	transcription factor, putative [Ricinus	0.961	0.954	0.696	1e-165
224144770	421	predicted protein [Populus trichocarpa]	0.961	0.950	0.695	1e-164
225441650	418	PREDICTED: uncharacterized protein LOC10	0.947	0.942	0.677	1e-156
225441648	412	PREDICTED: uncharacterized protein LOC10	0.932	0.941	0.663	1e-150
356543598	420	PREDICTED: uncharacterized protein LOC10	0.951	0.942	0.616	1e-140
356547128	400	PREDICTED: uncharacterized protein LOC10	0.891	0.927	0.619	1e-135
356542754	405	PREDICTED: uncharacterized protein LOC10	0.947	0.972	0.601	1e-130
356542756	399	PREDICTED: uncharacterized protein LOC10	0.932	0.972	0.590	1e-126
186509740	394	myb family transcription factor [Arabido	0.918	0.969	0.586	1e-125

>gi|224125896|ref|XP_002319702.1| predicted protein [Populus trichocarpa] gi|222858078|gb|EEE95625.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 322/443 (72%), Positives = 349/443 (78%), Gaps = 43/443 (9%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGKS+HSSSRM IP ERHLFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHQHQGKSIHSSSRMAIPPERHLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIG++KI     
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGSSKI----- 115

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMN--NLSIGPQPNK-----SLHISETIQMQIEV 173
                     G V V G+RMPEANATH+N  NLSIG QPNK     SLH SE +QMQIEV
Sbjct: 116 ----------GTVAVVGDRMPEANATHININNLSIGSQPNKILKSRSLHFSEALQMQIEV 165

Query: 174 QRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKV 233
           QRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGT GLEAAKVQLSELVSKV
Sbjct: 166 QRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKV 225

Query: 234 STQCLNSTFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYH 293
           STQCLNSTFS+L +LQG CPQQ    QP DCSMDSCLTSCEGSQK+QEIHN G+ LRP +
Sbjct: 226 STQCLNSTFSELNDLQGLCPQQTPPTQPNDCSMDSCLTSCEGSQKEQEIHNIGMGLRPCN 285

Query: 294 GTPTLEPKEIVEEPMLQQTELKWRKDLKESK-FLSSIG---------KDRGPGELSIGSG 343
               LEPKEI EE  LQQTELKW + L+++K FL+SIG          +R   +LSIG G
Sbjct: 286 SNALLEPKEIAEEHALQQTELKWGEYLRDNKMFLTSIGHETERRTFSAERSCSDLSIGVG 345

Query: 344 ----------SFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLN 393
                     SF  GRFK  +ED+ FQDQTNK+ E  K E+E + P YRL  F+TKLDLN
Sbjct: 346 LQGEKGNINSSFAEGRFKGMSEDDSFQDQTNKRAESVKYEDEKMSPGYRLSYFTTKLDLN 405

Query: 394 AHDHENDVASGCKQFDLNGFSWN 416
           +HD E D AS CKQ DLNGFSWN
Sbjct: 406 SHD-EIDAASSCKQLDLNGFSWN 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568946|ref|XP_002525443.1| transcription factor, putative [Ricinus communis] gi|223535256|gb|EEF36933.1| transcription factor, putative [Ricinus communis]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 303/435 (69%), Positives = 336/435 (77%), Gaps = 35/435 (8%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGKS+HSSSRM IP ERHLFLQGG+GPGDSGLVLSTDAKPRLKWT DLHE FI
Sbjct: 1   MYHHHQHQGKSVHSSSRMSIPPERHLFLQGGNGPGDSGLVLSTDAKPRLKWTSDLHEHFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN G+NKI     
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSGSNKI----- 115

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                   G G V   G+R+ E N TH+NNLS+G Q NK LHI E +QMQIEVQRRLHEQ
Sbjct: 116 --------GTGAVV--GDRISETNVTHINNLSMGTQTNKGLHIGEALQMQIEVQRRLHEQ 165

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLG+ GLEAAKVQLSELVSKVSTQCLNS
Sbjct: 166 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGSIGLEAAKVQLSELVSKVSTQCLNS 225

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEP 300
            FS+LKELQG C QQ Q   PTDCSMDSCLTSCEGSQK+QEIHN G+ LRPY+G   LE 
Sbjct: 226 AFSELKELQGLCHQQTQTAPPTDCSMDSCLTSCEGSQKEQEIHNTGMGLRPYNGNALLES 285

Query: 301 KEIVEEPMLQQTELKWRKDLKESK-FLSSIGK---------DRGPGELSIGSG------- 343
           K+I E  +L QTELKW +DLK++K FLS +G          +R   +LS+  G       
Sbjct: 286 KDITEGHVLHQTELKWSEDLKDNKMFLSPLGNNAARRNFAAERSTSDLSMTVGLQGENGN 345

Query: 344 --SFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDV 401
             SF  GR+K  N+ + F DQTNK  +  KL   ++   YRLP F+TKLDLN+H+ E D 
Sbjct: 346 ASSFSEGRYKDRNDGDSFPDQTNKSLDSVKLPKGDVSQGYRLPYFATKLDLNSHE-EIDA 404

Query: 402 ASGCKQFDLNGFSWN 416
           AS CKQ DLNGFSWN
Sbjct: 405 ASSCKQLDLNGFSWN 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144770|ref|XP_002325408.1| predicted protein [Populus trichocarpa] gi|222862283|gb|EEE99789.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 304/437 (69%), Positives = 336/437 (76%), Gaps = 37/437 (8%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY HHQ+QGK++HSSSR  IP ERHLFLQ G+GPGDSGLVLSTDAKPRLKWT DLHERFI
Sbjct: 1   MYQHHQHQGKNIHSSSRNSIPPERHLFLQVGNGPGDSGLVLSTDAKPRLKWTTDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN G+NK      
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSGSNK------ 114

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                     G V V G+RMPE NATH+NNLSIG Q NKSLH SE +Q+QIEVQRRLHEQ
Sbjct: 115 ---------SGTVAVVGDRMPEVNATHINNLSIGSQTNKSLHFSEALQVQIEVQRRLHEQ 165

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLGT GLEAAKVQLSELVSKVS++CLNS
Sbjct: 166 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSSKCLNS 225

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEP 300
            FS+LK+LQG CP   Q   P DCSMDSCLTS EGSQK+QEIHN G+ LRPY+G   LEP
Sbjct: 226 AFSELKDLQGLCPPLTQPTHPNDCSMDSCLTSIEGSQKEQEIHNTGMGLRPYNGNALLEP 285

Query: 301 KEIVEEPMLQQTELKW-RKDLKESK-FLSSIGKD---------RGPGELSIGSG------ 343
           K I  E  LQQTELKW  +D +++K FLSS+  D         R    LSIG G      
Sbjct: 286 KVIAGEHALQQTELKWPGEDQRDNKMFLSSMRNDTERRTFSAERSCSNLSIGVGLQGERG 345

Query: 344 ----SFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHEN 399
               SF   RFK  +ED+ FQD+TN++ +  KLENE L P YRL  ++TKLDLN+H  E 
Sbjct: 346 NVSSSFAEARFKGRSEDDSFQDKTNRRIDAIKLENEKLSPGYRLSYYATKLDLNSHG-EI 404

Query: 400 DVASGCKQFDLNGFSWN 416
           D ASGC+Q DLNGFSWN
Sbjct: 405 DAASGCRQLDLNGFSWN 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441650|ref|XP_002282324.1| PREDICTED: uncharacterized protein LOC100248614 isoform 1 [Vitis vinifera]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/440 (67%), Positives = 331/440 (75%), Gaps = 46/440 (10%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHH +QGK++H SSR PI  ER+LFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN   +K      
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSK------ 114

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                        TV GERMPEAN   M++ +IG Q NKSLH+SET+QM IE QRRLHEQ
Sbjct: 115 -------------TVVGERMPEANGALMSSPNIGNQTNKSLHLSETLQM-IEAQRRLHEQ 160

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLG  GLEAAKVQLSELVSKVSTQCL+S
Sbjct: 161 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHS 220

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPY-HGTPTLE 299
            FS+LKELQ  CPQQ Q  QPTDCSMDSCLTSCEGSQ++QEIHN G+ LRPY +G+  LE
Sbjct: 221 AFSELKELQSLCPQQTQT-QPTDCSMDSCLTSCEGSQREQEIHNCGMGLRPYTNGSTPLE 279

Query: 300 PKEIVEEPMLQQTELKWRKDLKESK-FLSSIGKD---------RGPGELSI--------- 340
            K+  E P LQ T LKW +D KE++ F+SS+ +D         R   +LS+         
Sbjct: 280 AKDTAEPPGLQHTVLKWCEDTKENRQFISSMQRDAERRTMTAERSNSDLSMRIGLQGEKG 339

Query: 341 -GSGSFPAGRFKASNEDEHFQDQTNKKPE---GAKLENENLLPEYRLPCFSTKLDLNAHD 396
            GS S+  GRFK   E ++F D+TN   +     K ENE +   YRLPCF  KLDLNAHD
Sbjct: 340 NGSNSYSEGRFKGRAEADNFVDRTNHGADSGNSVKQENEKMSHGYRLPCFGAKLDLNAHD 399

Query: 397 HENDVASGCKQFDLNGFSWN 416
            ENDV   CKQFDLNGFSWN
Sbjct: 400 -ENDVTLSCKQFDLNGFSWN 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441648|ref|XP_002282336.1| PREDICTED: uncharacterized protein LOC100248614 isoform 2 [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/440 (66%), Positives = 325/440 (73%), Gaps = 52/440 (11%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHH +QGK++H SSR PI  ER+LFLQGG+GPGDSGLVLSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQAN   +K      
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSK------ 114

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                        TV GERMPEAN   M++ +IG Q NKSLH+SET+QM IE QRRLHEQ
Sbjct: 115 -------------TVVGERMPEANGALMSSPNIGNQTNKSLHLSETLQM-IEAQRRLHEQ 160

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LE      LRIEAQGKYLQAVLEKAQETLGRQNLG  GLEAAKVQLSELVSKVSTQCL+S
Sbjct: 161 LE------LRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHS 214

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPY-HGTPTLE 299
            FS+LKELQ  CPQQ Q  QPTDCSMDSCLTSCEGSQ++QEIHN G+ LRPY +G+  LE
Sbjct: 215 AFSELKELQSLCPQQTQT-QPTDCSMDSCLTSCEGSQREQEIHNCGMGLRPYTNGSTPLE 273

Query: 300 PKEIVEEPMLQQTELKWRKDLKESK-FLSSIGKD---------RGPGELSI--------- 340
            K+  E P LQ T LKW +D KE++ F+SS+ +D         R   +LS+         
Sbjct: 274 AKDTAEPPGLQHTVLKWCEDTKENRQFISSMQRDAERRTMTAERSNSDLSMRIGLQGEKG 333

Query: 341 -GSGSFPAGRFKASNEDEHFQDQTNKKPE---GAKLENENLLPEYRLPCFSTKLDLNAHD 396
            GS S+  GRFK   E ++F D+TN   +     K ENE +   YRLPCF  KLDLNAHD
Sbjct: 334 NGSNSYSEGRFKGRAEADNFVDRTNHGADSGNSVKQENEKMSHGYRLPCFGAKLDLNAHD 393

Query: 397 HENDVASGCKQFDLNGFSWN 416
            ENDV   CKQFDLNGFSWN
Sbjct: 394 -ENDVTLSCKQFDLNGFSWN 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543598|ref|XP_003540247.1| PREDICTED: uncharacterized protein LOC100810396 [Glycine max]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/438 (61%), Positives = 311/438 (71%), Gaps = 42/438 (9%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGK++HSSSRMPIP+ERH+FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQ+N    KI  +  
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTYKITTSA- 119

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                           GER+ E N THMN LS+GPQ NK LHISE +QMQIEVQRRL+EQ
Sbjct: 120 --------------STGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQ 165

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLG  G+EAAKVQLSELVSKVS+QCLNS
Sbjct: 166 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGVVGIEAAKVQLSELVSKVSSQCLNS 225

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEP 300
            F++ K+LQGF PQQ Q N P DCSMDSCLTS + SQK+QEI NG   LR ++    +E 
Sbjct: 226 AFTEPKDLQGFFPQQTQTNPPNDCSMDSCLTSSDRSQKEQEIQNG---LRHFNSHVFMEH 282

Query: 301 KEIVEEP-MLQQTELKWRKDLKESKFLSSIGKDR---------GPGELSIGSG------- 343
           KE  E P  L+  ELKW +D K++ FL+ + K+           P  LS+  G       
Sbjct: 283 KEATEAPNNLRNPELKWCEDGKKNTFLAPLSKNEERRNYAAESSPNNLSMSIGLERETEN 342

Query: 344 ---SFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPC---FSTKLDLNAHDH 397
               +P      S  D  FQ +   KPE  K  +E +  +YRLP     + +LDLN H  
Sbjct: 343 GINLYPERLITESQSDGEFQHRNRIKPETLKPVDEKVSQDYRLPASYFAAARLDLNTHG- 401

Query: 398 ENDVASGCKQFDLNGFSW 415
           +N+ A+ CKQ DLN FSW
Sbjct: 402 DNEAATTCKQLDLNRFSW 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547128|ref|XP_003541969.1| PREDICTED: uncharacterized protein LOC100799064 [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/418 (61%), Positives = 297/418 (71%), Gaps = 47/418 (11%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MYHHHQ+QGK++HSSSRMPIP+ERH+FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYHHHQHQGKNIHSSSRMPIPSERHMFLQAGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQ+N   +KI  +  
Sbjct: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSA- 119

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                           GER+ E N THMN LS+GPQ NK LHISE +QMQIEVQRRL+EQ
Sbjct: 120 --------------TTGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQ 165

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLG  GLEAAKVQLSELVSKVS+QC NS
Sbjct: 166 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCFNS 225

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEP 300
            F++LK+LQGFCPQQPQ N P DCSMDSC+TSC+ SQK+QEI NG   LR +     +E 
Sbjct: 226 AFTELKDLQGFCPQQPQTNPPNDCSMDSCITSCDRSQKEQEIQNG---LRHFSSHMFMEQ 282

Query: 301 KEIVEEP-MLQQTELKWRKDLKESKFLSSIGKDR---------GPGELSI---------- 340
           KE  E P  L+  E+KW  D K++ FL+ + K+           P  LS+          
Sbjct: 283 KEAKEAPNNLRNPEIKWYDDGKKNTFLAPLSKNEERRNYAAECSPSNLSMSIGLERETEN 342

Query: 341 GSGSFPAGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPC---FSTKLDLNAH 395
           GS  +P      S  D         KP+  K  +E +  +YRLP     + +LDLN H
Sbjct: 343 GSSMYPERLITESPSDGRI------KPQTMKPVDEKVSQDYRLPTSYFAAARLDLNTH 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542754|ref|XP_003539830.1| PREDICTED: uncharacterized protein LOC100805237 isoform 1 [Glycine max]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/427 (60%), Positives = 302/427 (70%), Gaps = 33/427 (7%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY H Q+QGK++HSSSRMPIP+ER +FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAV QLGGADKATPKTVMKL+GIPGLTLYHLKSHLQKYRLSK+LHGQ+N   +KI     
Sbjct: 61  EAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKIT---- 116

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQP-NKSLHISETIQMQIEVQRRLHE 179
                    +       ER+ E N THMN+L++ PQ  NK L+ISE + MQIE QRRL+E
Sbjct: 117 ---------INSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNE 167

Query: 180 QLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLN 239
           QLEVQR LQLRIEAQGKYLQAVLEKAQETLGRQNLG  GLEA K+QLSELVSKVS+QCLN
Sbjct: 168 QLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLN 227

Query: 240 STFSD-LKELQGFCP-QQPQANQP--TDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGT 295
           S FSD LKE+QGF P QQ Q NQP   DCSMDSCLTSCEGSQK+QEI NGG+ LRP++  
Sbjct: 228 SAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVH 287

Query: 296 PTLEPKEIVEEPMLQ---QTELKWRKDLKESKFLSSI---GKDRGPGELSIGSGSFPAGR 349
             +E KE++E P L     T+L W   +K++ FL+ +      R P  LS+  G      
Sbjct: 288 TFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIG------ 341

Query: 350 FKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFD 409
            +   E+       + KP   K+  +  LP       ++KLDL   D++ D  + CKQ D
Sbjct: 342 LEGETENGSTIRTESVKPVADKVSQDYGLPSNYFA--ASKLDLTTEDNK-DTKTSCKQLD 398

Query: 410 LNGFSWN 416
           LNGFSWN
Sbjct: 399 LNGFSWN 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542756|ref|XP_003539831.1| PREDICTED: uncharacterized protein LOC100805237 isoform 2 [Glycine max]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/427 (59%), Positives = 297/427 (69%), Gaps = 39/427 (9%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY H Q+QGK++HSSSRMPIP+ER +FLQ G+G GDSGLVLSTDAKPRLKWTPDLH RFI
Sbjct: 1   MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFI 60

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAV QLGGADKATPKTVMKL+GIPGLTLYHLKSHLQKYRLSK+LHGQ+N   +KI     
Sbjct: 61  EAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKIT---- 116

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQP-NKSLHISETIQMQIEVQRRLHE 179
                    +       ER+ E N THMN+L++ PQ  NK L+ISE + MQIE QRRL+E
Sbjct: 117 ---------INSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNE 167

Query: 180 QLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLN 239
           QLE      LRIEAQGKYLQAVLEKAQETLGRQNLG  GLEA K+QLSELVSKVS+QCLN
Sbjct: 168 QLE------LRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLN 221

Query: 240 STFSD-LKELQGFCP-QQPQANQP--TDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGT 295
           S FSD LKE+QGF P QQ Q NQP   DCSMDSCLTSCEGSQK+QEI NGG+ LRP++  
Sbjct: 222 SAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVH 281

Query: 296 PTLEPKEIVEEPMLQ---QTELKWRKDLKESKFLSSI---GKDRGPGELSIGSGSFPAGR 349
             +E KE++E P L     T+L W   +K++ FL+ +      R P  LS+  G      
Sbjct: 282 TFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIG------ 335

Query: 350 FKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFD 409
            +   E+       + KP   K+  +  LP       ++KLDL   D++ D  + CKQ D
Sbjct: 336 LEGETENGSTIRTESVKPVADKVSQDYGLPSNYFA--ASKLDLTTEDNK-DTKTSCKQLD 392

Query: 410 LNGFSWN 416
           LNGFSWN
Sbjct: 393 LNGFSWN 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509740|ref|NP_001118567.1| myb family transcription factor [Arabidopsis thaliana] gi|6223653|gb|AAF05867.1|AC011698_18 transfactor-like [Arabidopsis thaliana] gi|332640508|gb|AEE74029.1| myb family transcription factor [Arabidopsis thaliana]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/428 (58%), Positives = 300/428 (70%), Gaps = 46/428 (10%)

Query: 1   MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
           MY+ +Q+QGK++ SSSRM I +ERH FL+G S PGDSGL+LSTDAKPRLKWTPDLHERFI
Sbjct: 1   MYYQNQHQGKNILSSSRMHITSERHPFLRGNS-PGDSGLILSTDAKPRLKWTPDLHERFI 59

Query: 61  EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
           EAVNQLGGADKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NKI     
Sbjct: 60  EAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKI----- 114

Query: 121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                     G +T+  E+ P+A+     NLSIGPQPNK+  I E +QMQIEVQRRLHEQ
Sbjct: 115 ----------GIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query: 181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
           LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLG AG+EAAKVQLSELVSKVS +  NS
Sbjct: 165 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNS 224

Query: 241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQE-IHNGGVRLRPYHGTPTLE 299
           +F + KELQ  C QQ Q N P DCS++SCLTS EG+QK+ + + N  + LR Y G  T E
Sbjct: 225 SFLEPKELQNLCSQQMQTNYPPDCSLESCLTSSEGTQKNSKMLENNRLGLRTYIGDSTSE 284

Query: 300 PKEIVEEPMLQQTELKWRKDLKESKFLSSI---------GKDRGPGELSIGSG--SFPAG 348
            KEI+EEP+ Q+ EL W + L+ + +LS++           +R PG LSIG G     + 
Sbjct: 285 QKEIMEEPLFQRMELTWTEGLRGNPYLSTMVSEAEQRISYSERSPGRLSIGVGLHGHKSQ 344

Query: 349 RFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQF 408
             + +NED   + +  K  +                  +T+LDLN H  EN   +  KQF
Sbjct: 345 HQQGNNEDHKLETRNRKGMDS-----------------TTELDLNTHV-ENYCTTRTKQF 386

Query: 409 DLNGFSWN 416
           DLNGFSWN
Sbjct: 387 DLNGFSWN 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.923	0.974	0.598	1.6e-116
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.932	0.965	0.574	1.1e-112
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.562	0.694	0.478	8.3e-51
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.550	0.768	0.439	1.7e-41
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.591	0.833	0.417	4.6e-41
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.415	0.655	0.444	2.2e-34
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.425	0.494	0.402	5.6e-29
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.137	0.152	0.649	1.2e-27
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.139	0.146	0.637	1e-26
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.382	0.676	0.380	7.6e-25

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 255/426 (59%), Positives = 302/426 (70%)

Query:     1 MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
             MY+ +Q+QGK++ SSSRM I +ERH FL+G S PGDSGL+LSTDAKPRLKWTPDLHERFI
Sbjct:     1 MYYQNQHQGKNILSSSRMHITSERHPFLRGNS-PGDSGLILSTDAKPRLKWTPDLHERFI 59

Query:    61 EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
             EAVNQLGGADKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NKI     
Sbjct:    60 EAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKI----- 114

Query:   121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                       G +T+  E+ P+A+     NLSIGPQPNK+  I E +QMQIEVQRRLHEQ
Sbjct:   115 ----------GIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query:   181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
             LEVQRHLQLRIEAQGKYLQ+VLEKAQETLGRQNLG AG+EAAKVQLSELVSKVS +  NS
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQLSELVSKVSAEYPNS 224

Query:   241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQE-IHNGGVRLRPYHGTPTLE 299
             +F + KELQ  C QQ Q N P DCS++SCLTS EG+QK+ + + N  + LR Y G  T E
Sbjct:   225 SFLEPKELQNLCSQQMQTNYPPDCSLESCLTSSEGTQKNSKMLENNRLGLRTYIGDSTSE 284

Query:   300 PKEIVEEPMLQQTELKWRKDLKESKFLSSIGKD---------RGPGELSIGSGSFPAGRF 350
              KEI+EEP+ Q+ EL W + L+ + +LS++  +         R PG LSIG G       
Sbjct:   285 QKEIMEEPLFQRMELTWTEGLRGNPYLSTMVSEAEQRISYSERSPGRLSIGVGLH----- 339

Query:   351 KASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCKQFDL 410
                ++ +H   Q N   E  KLE  N     +    +T+LDLN H  EN   +  KQFDL
Sbjct:   340 --GHKSQH--QQGNN--EDHKLETRNR----KGMDSTTELDLNTHV-ENYCTTRTKQFDL 388

Query:   411 NGFSWN 416
             NGFSWN
Sbjct:   389 NGFSWN 394

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 247/430 (57%), Positives = 300/430 (69%)

Query:     1 MYHHHQNQGKSMHSSSRMPIPTERHLFLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFI 60
             MY+H+Q+QGKS+ SSSRMPI +ERH FL+G +G GDSGL+LSTDAKPRLKWTPDLHERF+
Sbjct:     1 MYYHNQHQGKSILSSSRMPISSERHPFLRG-NGTGDSGLILSTDAKPRLKWTPDLHERFV 59

Query:    61 EAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGI 120
             EAVNQLGG DKATPKT+MK+MGIPGLTLYHLKSHLQKYRLSKNL+GQAN   NK   T +
Sbjct:    60 EAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNK---TSV 116

Query:   121 GGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQ 180
                         +T+  E  PE + +H  +LSIGPQP+ +L IS+ +QMQIEVQRRLHEQ
Sbjct:   117 ------------MTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQ 164

Query:   181 LEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVSTQCLNS 240
             LEVQRHLQLRIEAQGKYLQ++LEKAQETLGRQNLG AG+EA K QLSELVSKVS    +S
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSADYPDS 224

Query:   241 TFSDLKELQGFCPQQPQANQPTDCSMDSCLTSCEGSQKDQEIHNGGVRLRPYHGTPTLEP 300
             +F + KELQ    QQ Q   P + S+DSCLTS EG+QK  ++ +  + LR Y G  T E 
Sbjct:   225 SFLEPKELQNLHHQQMQKTYPPNSSLDSCLTSSEGTQKAPKMLDNRLGLRTYIGDSTSEQ 284

Query:   301 KEIVEEPMLQQTELKWRKD--LKESK---FLSSIGKD---------RGPGELSIGSGSFP 346
             KEI+EEP   + EL W ++  L+E+    +LS++  +         R PG LSIG G   
Sbjct:   285 KEIMEEPFFHRMELTWAEEESLRENHNRPYLSTMVNNAEPRISSSRRSPGRLSIGVG-LH 343

Query:   347 AGRFKASNEDEHFQDQTNKKPEGAKLENENLLPEYRLPCFSTKLDLNAHDHENDVASGCK 406
               R ++SN  E+ +++ N+  E  KLE              T LDLN HD EN   +  K
Sbjct:   344 EHRGRSSNNSEYTEERFNENNEDCKLETHT----------RTALDLNTHD-ENYGTTRPK 392

Query:   407 QFDLNGFSWN 416
             QFDLNGFSWN
Sbjct:   393 QFDLNGFSWN 402

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 121/253 (47%), Positives = 164/253 (64%)

Query:    39 LVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98
             LVLSTDAKPRLKWT DLH +FIEAVNQLGG +KATPK +MK+M IPGLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    99 RLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPN 158
             RL K++       +NK+  +     +   S      + G  + E N+         P  +
Sbjct:    87 RLGKSM----KFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSN--------PAKD 134

Query:   159 KSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAG 218
             + L I+E +QMQ+EVQ++LHEQ+EVQRHLQ++IEAQGKYLQ+VL KAQ+TL   +    G
Sbjct:   135 RGLQITEALQMQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLG 194

Query:   219 LEAAKVQLSELVSKVSTQCLNSTFSDL----KELQGFCPQQPQANQPTD---CSMDSCLT 271
             ++ A+ +LS L S V+  C +++FS+L    +E +GF   +   N+      CS++S LT
Sbjct:   195 MDFARTELSRLASMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGISQLRCSVESSLT 254

Query:   272 SCEGSQKDQEIHN 284
             S E S+   +  N
Sbjct:   255 SSETSETKLDTDN 267

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 112/255 (43%), Positives = 151/255 (59%)

Query:    28 LQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLT 87
             L G + PGD+ LVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M+ MG+ GLT
Sbjct:    23 LDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLT 82

Query:    88 LYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATH 147
             LYHLKSHLQK+RL +   G+ +  N+K A   +G    +S   G  +    RM +     
Sbjct:    83 LYHLKSHLQKFRLGRQA-GKESTENSKDASC-VG----ESQDTGSSSTSSMRMAQQEQNE 136

Query:   148 MNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQE 207
                   G Q  ++L     +Q ++  Q    E  +VQR LQLRIEAQGKYLQ++LEKA +
Sbjct:   137 ------GYQVTEALRAQMEVQRRLHDQL---EYGQVQRRLQLRIEAQGKYLQSILEKACK 187

Query:   208 TLGRQNLGTAGLEAAKVQLSELVSKVS--TQCLNSTFSDLKELQGFCPQQPQA------- 258
                 Q    AGLEAA+ +LSEL  KVS  +Q  +  + D  ++    P   +        
Sbjct:   188 AFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMM-MMPSLSELAVAIDNK 246

Query:   259 -NQPTDCSMDSCLTS 272
              N  T+CS++S LTS
Sbjct:   247 NNITTNCSVESSLTS 261

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 112/268 (41%), Positives = 154/268 (57%)

Query:    12 MHSSSRMPIPTERHL--FLQGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGA 69
             M+S+ R  +P +  L  +  G + P D+ LVL+TD KPRL+WT +LHERF++AV QLGG 
Sbjct:     1 MYSAIRSSLPLDGSLGDYSDGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGP 60

Query:    70 DKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSG 129
             DKATPKT+M+ MG+ GLTLYHLKSHLQK+RL +    + +I N+K            SS 
Sbjct:    61 DKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQ-SCKESIDNSKDVSCVAESQDTGSSS 119

Query:   130 VGPVTVPGERMPEANATHMNNLSIGPQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQL 189
                + +  +   E N ++        Q  ++L     +Q ++  Q    E  +VQR LQL
Sbjct:   120 TSSLRLAAQ---EQNESY--------QVTEALRAQMEVQRRLHEQL---EYTQVQRRLQL 165

Query:   190 RIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKVST----QCLNSTFSDL 245
             RIEAQGKYLQ++LEKA + +  Q +  AGLEAA+ +LSEL  K S     Q   STF   
Sbjct:   166 RIEAQGKYLQSILEKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTT 225

Query:   246 KELQGFCPQQPQA-NQPTDCSMDSCLTS 272
             K +     +   A     +CS +S LTS
Sbjct:   226 KMMIPSLSELAVAIEHKNNCSAESSLTS 253

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 84/189 (44%), Positives = 121/189 (64%)

Query:    40 VLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
             +++ D KPRL+WT DLH+RF++AV +LGGADKATPK+V+KLMG+ GLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:   100 LSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNK 159
             L +    + N       + G   + F +   G ++         N +  +N     + + 
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGIS---------NDSRFDNHQ---RQSG 108

Query:   160 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGL 219
             ++  +E ++ Q++ Q+R  EQLEVQ+ LQ+R+EAQGKYL  +LEKAQ++L     G AG 
Sbjct:   109 NVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLP---CGNAG- 164

Query:   220 EAAKVQLSE 228
             E  K Q S+
Sbjct:   165 ETDKGQFSD 173

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 76/189 (40%), Positives = 111/189 (58%)

Query:    35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
             GDSGLVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M++MG+ GLTLYHLKSH
Sbjct:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query:    95 LQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIG 154
             LQK+RL K  H +   G+    H+   G +  +  +         M   N   M  + + 
Sbjct:    83 LQKFRLGKQPHKE--YGD----HSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQ-MEVQ 135

Query:   155 PQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG-RQN 213
              + ++ L +   +Q++IE Q +  + + ++R  Q      G+ + A    A    G + N
Sbjct:   136 RRLHEQLEVQRHLQLRIEAQGKYMQSI-LERACQT---LAGENMAAATAAAAVGGGYKGN 191

Query:   214 LGTAGLEAA 222
             LG++ L AA
Sbjct:   192 LGSSSLSAA 200

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query:    46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
             K R++WT DLHE+F+E VN+LGGADKATPK ++K M   GLT++H+KSHLQKYR++K
Sbjct:   192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAK 248

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
 Identities = 37/58 (63%), Positives = 51/58 (87%)

Query:    45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
             AK R++WTP+LHE F++AVNQLGG+++ATPK V+K M + GLT++H+KSHLQKYR +K
Sbjct:   230 AKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAK 287

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 67/176 (38%), Positives = 103/176 (58%)

Query:    37 SGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQ 96
             SGLVL+TD KPRL+WT +LHERF++AV  LGG +KATPKT+M++MG+ GLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    97 KYRLSKNLHGQANIGNNK-IAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGP 155
             K+RL K  H + +  ++  I  T    M          T P              L IG 
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSP--------------LIIGR 119

Query:   156 QPNK-SLHISETIQMQIEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQAVLEKAQETL 209
               N+  + +   I+ ++ ++R++++++  Q ++++  +E   +  +A L K   TL
Sbjct:   120 NMNEMQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEASLTKDYSTL 175

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691
3rd Layer	3.4.24.57	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130592 hypothetical protein (427 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-22
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	5e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-08

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 37/51 (72%), Positives = 46/51 (90%)

Query: 160 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG 210
            + I+E +++Q+EVQRRLHEQLEVQRHLQ+RIEAQGKYLQ +LEKAQ+TL 
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
           KPR+ WT DLH+RF++AV +LGG D ATPK +++LM + GLT   + SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 46  KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
           K ++ WTP+LH RF+ AV QLG  +KA P  +++LMG+  LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
          R  WTP+  E  IEAV + G  +      + K +  PG T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.14
smart00426	68	TEA TEA domain.	90.11

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=3.7e-25  Score=167.96  Aligned_cols=51  Identities=75%  Similarity=1.086  Sum_probs=48.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 014887          160 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG  210 (416)
Q Consensus       160 ~~qI~EALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEkAQe~La  210 (416)
                      +++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999999999999864

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=4.2e-23  Score=207.17  Aligned_cols=62  Identities=45%  Similarity=0.818  Sum_probs=58.4

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcccC
Q 014887           42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL  104 (416)
Q Consensus        42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~  104 (416)
                      ...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            34689999999999999999999998 799999999999999999999999999999999753

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=2.7e-21  Score=148.86  Aligned_cols=56  Identities=59%  Similarity=0.996  Sum_probs=54.4

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887           46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS  101 (416)
Q Consensus        46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  101 (416)
                      |+|++||+|+|++||+||+.||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.14  E-value=0.0012  Score=48.08  Aligned_cols=48  Identities=33%  Similarity=0.436  Sum_probs=41.2

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887           48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR   99 (416)
Q Consensus        48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR   99 (416)
                      |-.||++=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999982 1  5899999997 7999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.11  E-value=0.31  Score=39.90  Aligned_cols=46  Identities=26%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCChH-HHHhh--------------hCCCCC--CHHHHHHHhhh
Q 014887           50 KWTPDLHERFIEAVNQLGGADKATPK-TVMKL--------------MGIPGL--TLYHLKSHLQK   97 (416)
Q Consensus        50 rWT~eLH~rFV~AV~~LGG~~kAtPK-~IL~l--------------M~v~gL--T~~hVkSHLQK   97 (416)
                      +|.++|-..|++|+...-  ...+-| .+...              ....|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999999874  333333 22211              112443  67889999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		3e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-24

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 95.0 bits (236), Expect = 1e-24
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 102 K 102
            
Sbjct: 60  L 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.78
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	86.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	85.85
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	84.05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=1e-28  Score=193.50  Aligned_cols=61  Identities=41%  Similarity=0.810  Sum_probs=57.8

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhccc
Q 014887           42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN  103 (416)
Q Consensus        42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~  103 (416)
                      ++.+|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999998 79999999999999999999999999999999753

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.78  E-value=1.6  Score=34.69  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887           46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR   99 (416)
Q Consensus        46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR   99 (416)
                      ..+-.||+|=+.+|++||...|+    .=+.|-+.|  ++=|..+++.|-++|-
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLP   63 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhc
Confidence            34678999999999999999993    346677776  5799999999998873

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.68  E-value=2  Score=32.83  Aligned_cols=54  Identities=13%  Similarity=0.242  Sum_probs=41.5

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChH---HHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887           46 KPRLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (416)
Q Consensus        46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~k  102 (416)
                      ..+=.||+|=+++|++||..+| .+...|.   .|-+.|  +|=|-.+|+.|-|+|-...
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            3455899999999999999998 3332233   555555  7899999999999997653

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=85.85  E-value=2.2  Score=32.63  Aligned_cols=51  Identities=25%  Similarity=0.365  Sum_probs=41.8

Q ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887           46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (416)
Q Consensus        46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k  102 (416)
                      ..+-.||+|=++.|+++|..+|-    .=..|-+.|  +|=|-.+|+.|.++|-..+
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            34668999999999999999982    445666665  8999999999999986554

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=84.05  E-value=1  Score=36.95  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhh---h-C-------------CCCCCHHHHHHHhhhhhhcc
Q 014887           45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKL---M-G-------------IPGLTLYHLKSHLQKYRLSK  102 (416)
Q Consensus        45 ~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l---M-~-------------v~gLT~~hVkSHLQKYRl~k  102 (416)
                      .+..=+|.++|-..|++|+...- +. -+-|-+|..   | |             -+-=|..+|.||||.-|..+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~   75 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK   75 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence            34566899999999999999885 11 122222211   1 1             03347889999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	416
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	9e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.8 bits (220), Expect = 9e-23
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 42  STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
           +   KPR+ WT +LH +F+ AV+ LG  ++A PK ++ LM +  LT  ++ SHLQK+R++
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 102 K 102
            
Sbjct: 60  L 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	88.28
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	82.13

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.9e-26  Score=176.84  Aligned_cols=61  Identities=41%  Similarity=0.791  Sum_probs=57.2

Q ss_pred             cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhccc
Q 014887           42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN  103 (416)
Q Consensus        42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~  103 (416)
                      |..+|||++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999975 8999999999999999999999999999999753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.79  Score=32.51  Aligned_cols=49  Identities=27%  Similarity=0.408  Sum_probs=40.2

Q ss_pred             CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887           48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK  102 (416)
Q Consensus        48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k  102 (416)
                      ..+||+|=++.|++||...|.    .=..|-+.|  ++=|..+|++|.++|....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999983    345666666  6889999999999886554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.13  E-value=1.6  Score=29.72  Aligned_cols=44  Identities=27%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhh
Q 014887           50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY   98 (416)
Q Consensus        50 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY   98 (416)
                      .||.+=+.+|++||...| .  ..=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 2  12456666664  67999999998887