Citrus Sinensis ID: 014893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccccHHHHHHccccccccccccccccccEEcccccccccccccccccHHHEEEHEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccEEEEEEccccHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNLNANMLQAQRsrfnsktfsltiskhnipvlprnrslsfstswcpvhfrsishsnlkfgssrnfvtnsvsenisgpfdqdpdrnyvtesnqVLNQEFSLVNILKqsnsflphVVLGSTMlalvfppsftwftaryyapALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIsvsvfglptpigAGIMLVSCVsgaqlsnyatfltdpplaplsIVMTSLSTATAVFVTPLLSLLLIgkrlpvdvkgMVSSILQIVVVPIAaglllnrffpricnairpflpplsVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRffqdplvsvppAISTVIMSLMGFFLVMLWAKKSE
Flexible Loop (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTiskhnipvlprnrSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENisgpfdqdpdRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Low Complexity Region (SEG)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGltillliitFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered region (IsUnstruct)
*******************FSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFG******************************NQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWA****
Disordered Region (DISOPRED)
*********AQRSRFNSKTFSLTISKH***********************************************************************SLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS*
Disordered Region (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered Region (DISPRO)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q8VYY4	409	Probable sodium/metabolit	yes	no	0.848	0.863	0.713	1e-144
Q650U0	401	Probable sodium/metabolit	yes	no	0.841	0.872	0.704	1e-141
B8BDK4	401	Probable sodium/metabolit	N/A	no	0.841	0.872	0.704	1e-141
F4JPW1	407	Probable sodium/metabolit	no	no	0.930	0.950	0.644	1e-139
Q6K739	423	Probable sodium/metabolit	no	no	0.670	0.659	0.445	3e-59
Q8RXE8	431	Probable sodium/metabolit	no	no	0.716	0.691	0.418	4e-57
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.860	0.875	0.306	5e-43
Q5VRB2	419	Probable sodium/metabolit	no	no	0.737	0.732	0.329	1e-39
Q93YR2	401	Probable sodium/metabolit	no	no	0.860	0.892	0.297	5e-39
Q7XVB3	406	Probable sodium/metabolit	no	no	0.697	0.714	0.33	5e-32

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/359 (71%), Positives = 301/359 (83%), Gaps = 6/359 (1%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 358 KALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 348 KAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/352 (70%), Positives = 297/352 (84%), Gaps = 2/352 (0%)

Query: 67  TNSVSENISGPFDQD--PDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 349 SFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/352 (70%), Positives = 297/352 (84%), Gaps = 2/352 (0%)

Query: 67  TNSVSENISGPFDQD--PDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 349 SFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  493 bits (1270), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/399 (64%), Positives = 319/399 (79%), Gaps = 12/399 (3%)

Query: 25  SKHNIPVLPRNRS--LSFSTSWCPVHFRSISHSNLKFGSSRNF--VTNSVSENISGPFDQ 80
           S+H + + PRN S  L+F ++    +F   S S+L    S +F   +N +S+N       
Sbjct: 14  SQHRL-LQPRNYSYALAFHSTRRVANFPRNSFSSLG-SCSVDFPLRSNPISQNSK---SI 68

Query: 81  DPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYY 137
            P R YV+ES  N++ +++ S ++  LKQ+ SF+PH +L ST+LALV+PPSFTWF  RY+
Sbjct: 69  HPWRRYVSESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYF 128

Query: 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
            P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG I+VS+F LPT
Sbjct: 129 VPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPT 188

Query: 198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
            IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+LSLLLIGK+L
Sbjct: 189 SIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKL 248

Query: 258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI 317
           PVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +CC+GAPLA+NI
Sbjct: 249 PVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNI 308

Query: 318 ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLAL 377
           +S++SPFG TIL L+ITFHL AFVAGY  TG  F++A DVKALQRT+SYETGMQSSLLAL
Sbjct: 309 DSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLAL 368

Query: 378 ALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           ALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct: 369 ALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/287 (44%), Positives = 185/287 (64%), Gaps = 8/287 (2%)

Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F+W +  YYAPALG +M ++G+  S  DF  AFKRP  +  GY+ Q++VKP++G + 
Sbjct: 123 PATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRPVPLTIGYMAQYIVKPLMGVLI 182

Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
                  FG+P+   AG +L  CVSGAQLS+YA+FL+   +A LSI++TS ST ++V VT
Sbjct: 183 A----RAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVA-LSILLTSCSTISSVVVT 237

Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 305
           P+L+ LLIG  +PVD   M  SILQ+V+VP+  GLLLN +   + N I+P +P +++L T
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 306 ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 365
           + C+G+PLAIN   ++S  G  +LL I+TFH++AF+ GY ++ L      +   + RT+S
Sbjct: 298 SLCIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKLPMLRQEE--PVCRTIS 355

Query: 366 YETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWA 412
             TGMQSS LA  LA +F      +VP A S VIM++ G  L   W 
Sbjct: 356 VCTGMQSSTLAGLLATQFLGSSQ-AVPAACSVVIMAIFGLTLASYWG 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 191/306 (62%), Gaps = 8/306 (2%)

Query: 108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
           ++ LP VV  + + AL +PPSFTW +   YAPALG +M ++G+  S  DF  AFKRP  +
Sbjct: 112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query: 168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
             G+V Q+V+KP+LG +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A
Sbjct: 172 SVGFVAQYVLKPLLGVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query: 228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287
            +SI++TS +T  +V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +  
Sbjct: 228 -MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAK 286

Query: 288 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 347
            +   ++P +P ++++ T+ C+G+PL+IN   ++S  GL +++ I+TFH  AF  GY  +
Sbjct: 287 PVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFS 346

Query: 348 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFL 407
            +      +   + RT+S  TGMQSS LA  LA++F      +VP A S V+M++MG  L
Sbjct: 347 KIPGLRQEE--EVSRTISLCTGMQSSTLAGLLASQFLGSS-QAVPAACSVVVMAIMGLCL 403

Query: 408 VMLWAK 413
              W  
Sbjct: 404 ASFWGN 409

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 205/411 (49%), Gaps = 53/411 (12%)

Query: 31  VLPRNRSLS---FSTSWCPVHFRSISHSN---------------------------LKFG 60
           +LP +  LS    +TSW P   R+ +H +                           L+  
Sbjct: 7   ILPTDGRLSQCRINTSWVPSTTRTQTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEAT 66

Query: 61  SSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTM 120
           SSR  V  + +  +SG   +   +         L+Q   ++ +L    +  P  V+  T+
Sbjct: 67  SSRRVVCKAAA-GVSGDLPESTPKE--------LSQYEKIIELL---TTLFPLWVILGTL 114

Query: 121 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 180
           + +  P   TW     +   LGFLM ++G+  + +DF    + P  +  G++ Q+++KPI
Sbjct: 115 VGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPI 174

Query: 181 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 240
           LG++          L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  
Sbjct: 175 LGFLIAM----TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIG 229

Query: 241 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300
           A+ +TPLL+ LL G+ +PVD  G+  S  Q+V+VP   G+L N FFP+  + I    P +
Sbjct: 230 AIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKFTSKIITVTPLI 289

Query: 301 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 360
            V++T     +P+   +  V+   G  ++L +   H +AF  GY ++  +F E+      
Sbjct: 290 GVILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISKFSFGESTS---- 344

Query: 361 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 411
            RT+S E GMQSS L   LA + F +PLV+VP A+S V M+L G  L + W
Sbjct: 345 -RTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 394

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 15/322 (4%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSE 154
           NQ   +V +L    +  P  V+  T++ +  P   TW     +   LGFLM ++G+  + 
Sbjct: 101 NQYEKIVELL---TTLFPVWVILGTIIGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTF 157

Query: 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214
           +DF    + P  +  G++ Q+++KP+LG+           L  P+  G++LVSC  G Q 
Sbjct: 158 EDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAM----TLKLSAPLATGLILVSCCPGGQA 213

Query: 215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 274
           SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q+V++
Sbjct: 214 SNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLL 272

Query: 275 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIIT 334
           P   G+L + +FP+    I    P + VL+T     +P+   +  V+   G  +++ +  
Sbjct: 273 PTIVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPIG-QVSEVLKAQGGQLIIPVAL 331

Query: 335 FHLSAFVAGYVVTGL-AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPP 393
            H++AF  GY ++ + +F E+       RT+S E GMQSS L   LA + F +PLV+VP 
Sbjct: 332 LHVAAFALGYWLSKVSSFGESTS-----RTISIECGMQSSALGFLLAQKHFTNPLVAVPS 386

Query: 394 AISTVIMSLMGFFLVMLWAKKS 415
           A+S V M+L G  L + W  + 
Sbjct: 387 AVSVVCMALGGSALAVFWRNRG 408

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 190/380 (50%), Gaps = 22/380 (5%)

Query: 46  PVHFRSISHSNLKFGSSRNFVTNSVSENI-----SGPFDQDP-----DRNYVTESNQVLN 95
           P+H R+IS S L +  S   ++      +        FD  P       +  TE  +   
Sbjct: 28  PLHLRTISCSRLSYSPSSREISLKTQSTVPISCRRSRFDFVPRCGISSNDLPTEKKKSFG 87

Query: 96  QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK 155
           +    V     S +F   V LG  +L L+ P +F W T  +    L   M  +G+  +  
Sbjct: 88  EWVEFVG-EAVSTAFPIWVSLG-CLLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLD 145

Query: 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215
           D   A   P  +FAG++ Q+ V P+  +    +      LP    AG++LV C  G   S
Sbjct: 146 DLRGALSMPKELFAGFLLQYSVMPLSAFFVSKL----LNLPPHYAAGLILVGCCPGGTAS 201

Query: 216 NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 275
           N  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ+V++P
Sbjct: 202 NIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLP 260

Query: 276 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITF 335
           + AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G  ++L     
Sbjct: 261 VLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLL 319

Query: 336 HLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAI 395
           H+S F+ GY+ + +   +     A  RT+S E GMQ+S+L + LA + F +PL +VP A+
Sbjct: 320 HISGFLFGYLFSRILGIDV----ASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAV 375

Query: 396 STVIMSLMGFFLVMLWAKKS 415
           S+V  S++G  L  +W + +
Sbjct: 376 SSVCHSILGSVLAGIWRRSA 395

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 10/300 (3%)

Query: 112 PHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171
           P  V  +  +AL  PP+F W +       + F M  +G+  +  D   A   P  + +G+
Sbjct: 107 PVWVASACAVALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGF 166

Query: 172 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSI 231
           + Q+ V P+ G++   +      LP+   AG++LVSC  G   SN  T+L    +A LS+
Sbjct: 167 LLQYSVMPLSGFLISKL----LNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVA-LSV 221

Query: 232 VMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 291
           +MT+ ST  A F+TPLL+  L G+ + VD  G+  S  Q+V+ P+  G LLN++   +  
Sbjct: 222 LMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQ 281

Query: 292 AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 351
            + P +P ++V   A   G  +A N  +++S  GL +++ +   H S F  GYV   L+ 
Sbjct: 282 LVSPLMPFIAVATVAVLCGNAIAQNASAILSS-GLQVVMSVCWLHASGFFFGYV---LSR 337

Query: 352 AEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 411
               D+ +  RT+S E GMQ+S+L + LA++ F +PL +VP A+S+V  S+ G  L  +W
Sbjct: 338 TIGIDISS-SRTISIEVGMQNSVLGVVLASKHFGNPLTAVPCAVSSVCHSVYGSLLAGIW 396

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
255537151	413	sodium-bile acid cotransporter, putative	0.860	0.866	0.818	1e-164
449460499	420	PREDICTED: probable sodium/metabolite co	0.944	0.935	0.679	1e-154
449494361	420	PREDICTED: probable sodium/metabolite co	0.944	0.935	0.676	1e-153
224074737	317	bile acid:Na+ symporter family protein [	0.759	0.996	0.860	1e-152
359497736	356	PREDICTED: uncharacterized sodium-depend	0.834	0.974	0.761	1e-147
147773542	352	hypothetical protein VITISV_011475 [Viti	0.769	0.909	0.812	1e-147
297799724	406	bile acid:sodium symporter family protei	0.838	0.859	0.726	1e-143
18416020	409	putative sodium-bile acid cotransporter	0.848	0.863	0.713	1e-142
115480215	401	Os09g0520600 [Oryza sativa Japonica Grou	0.841	0.872	0.704	1e-139
259490731	409	uncharacterized protein LOC100303815 [Ze	0.822	0.836	0.717	1e-138

>gi|255537151|ref|XP_002509642.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223549541|gb|EEF51029.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/359 (81%), Positives = 324/359 (90%), Gaps = 1/359 (0%)

Query: 59  FGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSNSFLPHVVLG 117
           F S++   +  +SE +S  FDQDP  N V + N++  QE FSL+NILK+SNS LPHVVL 
Sbjct: 54  FTSTKTQFSICLSEKLSDSFDQDPSLNIVNKHNKIFEQEEFSLINILKKSNSLLPHVVLA 113

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LALV+PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAFKRP+AIFAGY+GQF+V
Sbjct: 114 STLLALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFVEAFKRPSAIFAGYLGQFIV 173

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KPILGYIFG ISVSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDPP+APLSIVMTSLS
Sbjct: 174 KPILGYIFGIISVSVFNLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSLS 233

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAVFVTPLLSLLLIGKRLPVDV GMVSSILQIVV PIAAGLLLNRF P I NAIRPFL
Sbjct: 234 TATAVFVTPLLSLLLIGKRLPVDVTGMVSSILQIVVAPIAAGLLLNRFLPWISNAIRPFL 293

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           PPLSVLVTACCVGAPLAIN++SV+SPFG TIL LII+FHL AFVAGYV+TGL F +A D+
Sbjct: 294 PPLSVLVTACCVGAPLAINVKSVISPFGATILSLIISFHLLAFVAGYVLTGLVFPKAPDL 353

Query: 358 KALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           KALQRT+S+ETGMQSSLLALALANRFF+DPLV+VPPAISTV+MSLMGF LVM+WAKK E
Sbjct: 354 KALQRTMSFETGMQSSLLALALANRFFRDPLVAVPPAISTVMMSLMGFTLVMVWAKKKE 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460499|ref|XP_004147983.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/427 (67%), Positives = 329/427 (77%), Gaps = 34/427 (7%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFA 169
            LPHVVL ST++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 170 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 229
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 230 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 289
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 290 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 349
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 350 AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM 409
           AF  + DVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM
Sbjct: 347 AFHGSPDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVM 406

Query: 410 LWAKKSE 416
           +W+K+ E
Sbjct: 407 IWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494361|ref|XP_004159525.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/427 (67%), Positives = 328/427 (76%), Gaps = 34/427 (7%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFA 169
            LPHVVL ST++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 170 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 229
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 230 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 289
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 290 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 349
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 350 AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM 409
           AF  + DVK LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM
Sbjct: 347 AFHGSPDVKGLQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVM 406

Query: 410 LWAKKSE 416
           +W+K+ E
Sbjct: 407 IWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074737|ref|XP_002304447.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222841879|gb|EEE79426.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/316 (86%), Positives = 293/316 (92%)

Query: 99  SLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFI 158
           S+V++L+QSNS LPH+VL ST+LALV PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+
Sbjct: 1   SIVDMLEQSNSLLPHIVLASTLLALVHPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFL 60

Query: 159 EAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 218
           EAF RPAAI AGYVGQFVVKP LGY+FG ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA
Sbjct: 61  EAFNRPAAILAGYVGQFVVKPSLGYLFGIISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 120

Query: 219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAA 278
           TFLTDPP+APLSIVMTS+STATAVFVTPLLSLLLIGKRLPVDVKGMVSSI+QIVV PIAA
Sbjct: 121 TFLTDPPMAPLSIVMTSMSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIMQIVVAPIAA 180

Query: 279 GLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLS 338
           GLLLNR FP+I   IRPFLPPLSVLVTACCVGAPLAIN++SVMSPFG+TI+ LII FHLS
Sbjct: 181 GLLLNRLFPQISGVIRPFLPPLSVLVTACCVGAPLAINVDSVMSPFGVTIVSLIIAFHLS 240

Query: 339 AFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV 398
           AFV GY  TG  F +A D+KALQRTLSYETGMQSSLLALALANRFF+DPLV+VPPAISTV
Sbjct: 241 AFVVGYYFTGFVFHKASDLKALQRTLSYETGMQSSLLALALANRFFKDPLVAVPPAISTV 300

Query: 399 IMSLMGFFLVMLWAKK 414
           IMSLMGF LVM+WAKK
Sbjct: 301 IMSLMGFSLVMIWAKK 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497736|ref|XP_002274965.2| PREDICTED: uncharacterized sodium-dependent transporter yocS-like, partial [Vitis vinifera]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/348 (76%), Positives = 302/348 (86%), Gaps = 1/348 (0%)

Query: 50  RSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSN 108
           R+  + +L   S+R  +T  VS+ +S   + D D +Y  E +Q+  Q+  S+ +ILK +N
Sbjct: 9   RTDLNLSLTVASTRFSLTRCVSKKLSESLEPDQDPSYEPEPSQMRGQKKASITDILKGAN 68

Query: 109 SFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIF 168
             LPHVVL ST++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAF RP AIF
Sbjct: 69  GILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPMAIF 128

Query: 169 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 228
           AGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQLSNYATFLTDPP+AP
Sbjct: 129 AGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQLSNYATFLTDPPMAP 188

Query: 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288
           LSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSI QIVV PIAAGLLLNRF PR
Sbjct: 189 LSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSISQIVVAPIAAGLLLNRFLPR 248

Query: 289 ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 348
           ICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII FH +AFVAGY ++G
Sbjct: 249 ICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLIIAFHFTAFVAGYGLSG 308

Query: 349 LAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAIS 396
           L F EA DVKALQRTLS+ETGMQSSLLALALANRFFQD LV VPPAIS
Sbjct: 309 LVFHEAPDVKALQRTLSFETGMQSSLLALALANRFFQDSLVGVPPAIS 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773542|emb|CAN76453.1| hypothetical protein VITISV_011475 [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/325 (81%), Positives = 294/325 (90%), Gaps = 5/325 (1%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSE 154
            ++ S+ +ILK +N  LPHVVL ST++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSE
Sbjct: 4   QKKASIXDILKGANGILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSE 63

Query: 155 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 214
           KDF+EAF RP AIFAGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQL
Sbjct: 64  KDFLEAFNRPMAIFAGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQL 123

Query: 215 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 274
           SNYATFLTDPP+APLSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSILQIVV 
Sbjct: 124 SNYATFLTDPPMAPLSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSILQIVVA 183

Query: 275 PIAAGLLLNRFF-PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLII 333
           PIAAGLLLNR+F PRICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII
Sbjct: 184 PIAAGLLLNRWFLPRICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLII 243

Query: 334 TFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPP 393
            FH +AFVAGY ++GL F EA DVKA+QRTLS+ETGMQSSLLALALANRFFQD LV VPP
Sbjct: 244 AFHFTAFVAGYGLSGLVFHEAPDVKAIQRTLSFETGMQSSLLALALANRFFQDSLVGVPP 303

Query: 394 AISTVIMSLMGFFLVM----LWAKK 414
           AIS VIMSLMGF LVM    +W  K
Sbjct: 304 AISVVIMSLMGFALVMVGSIIWPMK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799724|ref|XP_002867746.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313582|gb|EFH44005.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/355 (72%), Positives = 302/355 (85%), Gaps = 6/355 (1%)

Query: 62  SRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTML 121
           SRN      S++ S     DP+ N V    +V+++  S+V+ +K++NS LPHVVL ST+L
Sbjct: 55  SRNLWRRYASDHFS-EMGLDPEANSV----KVIDKA-SIVDTMKKANSILPHVVLASTIL 108

Query: 122 ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL 181
           AL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKPIL
Sbjct: 109 ALLYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPIL 168

Query: 182 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 241
           G+IFG  +VSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTATA
Sbjct: 169 GFIFGLAAVSVFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATA 228

Query: 242 VFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 301
           V VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP LS
Sbjct: 229 VLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILS 288

Query: 302 VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA+Q
Sbjct: 289 VLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQ 348

Query: 362 RTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           RTLSYETGMQSSLLALALA +FFQDPLV +PPA+STV+MSLMGF LVM+W+ + E
Sbjct: 349 RTLSYETGMQSSLLALALATKFFQDPLVGIPPAVSTVVMSLMGFTLVMIWSNEKE 403

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416020|ref|NP_567671.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana] gi|75161555|sp|Q8VYY4.1|BASS6_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS6, chloroplastic; AltName: Full=Bile acid transporter 4; AltName: Full=Bile acid-sodium symporter family protein 6; Flags: Precursor gi|17529350|gb|AAL38902.1| unknown protein [Arabidopsis thaliana] gi|21436155|gb|AAM51324.1| unknown protein [Arabidopsis thaliana] gi|21618116|gb|AAM67166.1| unknown [Arabidopsis thaliana] gi|332659265|gb|AEE84665.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/359 (71%), Positives = 301/359 (83%), Gaps = 6/359 (1%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177
           ST+LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 237
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 238 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 297
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 298 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 357
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 358 KALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 348 KAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480215|ref|NP_001063701.1| Os09g0520600 [Oryza sativa Japonica Group] gi|75114195|sp|Q650U0.1|BASS5_ORYSJ RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|403399724|sp|B8BDK4.1|BASS5_ORYSI RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|52076164|dbj|BAD46677.1| unknown protein [Oryza sativa Japonica Group] gi|113631934|dbj|BAF25615.1| Os09g0520600 [Oryza sativa Japonica Group] gi|215678840|dbj|BAG95277.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202470|gb|EEC84897.1| hypothetical protein OsI_32074 [Oryza sativa Indica Group] gi|222641934|gb|EEE70066.1| hypothetical protein OsJ_30046 [Oryza sativa Japonica Group]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/352 (70%), Positives = 297/352 (84%), Gaps = 2/352 (0%)

Query: 67  TNSVSENISGPFDQD--PDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184
           +PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 245 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 305 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 364
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 365 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 349 SFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490731|ref|NP_001158917.1| uncharacterized protein LOC100303815 [Zea mays] gi|194705848|gb|ACF87008.1| unknown [Zea mays] gi|414886329|tpg|DAA62343.1| TPA: bile acid sodium symporter [Zea mays]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/343 (71%), Positives = 290/343 (84%), Gaps = 1/343 (0%)

Query: 75  SGPFDQDP-DRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFT 133
           SG F++D    + V  S   +  +   + ILK +NS +PH+VLGST+LALV+PPSFTWFT
Sbjct: 66  SGSFEKDNIGEDAVLPSQIAVENKVDFLKILKSANSIIPHIVLGSTILALVYPPSFTWFT 125

Query: 134 ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF 193
            RYYAPALGFLMFAVGVNSS KDFIEA KRP AI AGY+GQFV+KP+ G++FGT++V+V 
Sbjct: 126 TRYYAPALGFLMFAVGVNSSAKDFIEAIKRPDAIAAGYIGQFVIKPLFGFLFGTLAVAVL 185

Query: 194 GLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253
            LP  +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFVTP LS  LI
Sbjct: 186 NLPAALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFVTPTLSYFLI 245

Query: 254 GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPL 313
           G++LPVDVKGM+SSI+QIVV PIAAGLLLNRF PR+C AI+PFLP +SV VTA CVG+PL
Sbjct: 246 GQKLPVDVKGMMSSIVQIVVAPIAAGLLLNRFLPRLCAAIQPFLPSMSVFVTALCVGSPL 305

Query: 314 AINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS 373
           AINI++V+SPFGLTI+LL+  FH S+FVAGY + G  F ++ DVKALQRT+S+ETGMQSS
Sbjct: 306 AINIKAVLSPFGLTIVLLLFAFHTSSFVAGYHLAGTWFRKSDDVKALQRTISFETGMQSS 365

Query: 374 LLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
           LLALALAN+FF DPLV VPPAIS V+MSLMGF LVM+W+KK E
Sbjct: 366 LLALALANKFFPDPLVGVPPAISVVLMSLMGFALVMVWSKKRE 408

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.901	0.916	0.673	2.8e-130
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.947	0.968	0.625	1.3e-125
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.903	0.872	0.368	1.1e-55
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.728	0.740	0.354	4.2e-47
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.860	0.892	0.315	1.4e-41
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.682	0.881	0.320	6.5e-35
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.706	0.954	0.305	8.8e-31
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.706	0.954	0.305	8.8e-31
TIGR_CMR|SPO_0797	300	SPO_0797 "bile acid transporte	0.627	0.87	0.256	4.2e-12
UNIPROTKB|F6PLG8	305	SLC10A2 "Uncharacterized prote	0.615	0.839	0.268	1.1e-11

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
 Identities = 260/386 (67%), Positives = 306/386 (79%)

Query:    29 IPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVT 88
             I V P N   + S S  P+    IS    + G SRN      S+N S     DP      
Sbjct:    30 IQVFPPNIFSNTSLS-SPLRIDPIS----QVGGSRNLWRRYASDNFS-EMGLDPG----A 79

Query:    89 ESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAV 148
             +  +V+ +  S+V+ +K++NS LPHVVL ST+LAL++PPSFTWFT+RY+ PALGFLMFAV
Sbjct:    80 DPFKVIEKP-SIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSRYFVPALGFLMFAV 138

Query:   149 GVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSC 208
             G+NS+EKDF+EAFKRP AI  GYVGQ++VKP+LG+IFG  +VS+F LPTPIGAGIMLVSC
Sbjct:   139 GINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSC 198

Query:   209 VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSI 268
             VSGAQLSNYATFLTDP LAPLSIVMTSLSTATAV VTP+LSLLLIGK+LPVDVKGM+SSI
Sbjct:   199 VSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSI 258

Query:   269 LQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXX 328
             LQ+V+ PIAAGLLLN+ FP++ NAIRPFLP LSVL TACCVGAPLA+NI SVMSPFG   
Sbjct:   259 LQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGATI 318

Query:   329 XXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL 388
                   FHLSAF+AGY +TG  F  A D KA+QRTLSYETGMQSSLLALALA +FFQDPL
Sbjct:   319 LLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPL 378

Query:   389 VSVPPAISTVIMSLMGFFLVMLWAKK 414
             V +PPAISTV+MSLMGF LV++W+K+
Sbjct:   379 VGIPPAISTVVMSLMGFTLVLIWSKE 404

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 256/409 (62%), Positives = 319/409 (77%)

Query:    17 SKTFSLTI-SKHNIPVLPRNRS--LSFSTSWCPVHFRSISHSNLKFGS-SRNFV--TNSV 70
             S T +L + S+H + + PRN S  L+F ++    +F   S S+L  GS S +F   +N +
Sbjct:     5 SPTETLFLKSQHRL-LQPRNYSYALAFHSTRRVANFPRNSFSSL--GSCSVDFPLRSNPI 61

Query:    71 SENISGPFDQDPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTMLALVFPP 127
             S+N        P R YV+ES  N++ +++ S ++  LKQ+ SF+PH +L ST+LALV+PP
Sbjct:    62 SQNSKSIH---PWRRYVSESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPP 118

Query:   128 SFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187
             SFTWF  RY+ P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG 
Sbjct:   119 SFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGV 178

Query:   188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPL 247
             I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+
Sbjct:   179 IAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPM 238

Query:   248 LSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307
             LSLLLIGK+LPVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +C
Sbjct:   239 LSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSC 298

Query:   308 CVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYE 367
             C+GAPLA+NI+S++SPFG         FHL AFVAGY  TG  F++A DVKALQRT+SYE
Sbjct:   299 CIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYE 358

Query:   368 TGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
             TGMQSSLLALALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct:   359 TGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 145/394 (36%), Positives = 218/394 (55%)

Query:    27 HNIPVLPRNRSLSFSTSWCPVH-FRSISHSN-LKFG-SSRNFVTNSVSENISGPFDQDPD 83
             HN+P   ++ +  F +S  P+    S S SN L F    RN     V    + PF     
Sbjct:    23 HNLPAKSQSFNCQFRSSSSPLSSLHSSSLSNFLDFRLRRRNSGLVPVVACSTTPFMGRVG 82

Query:    84 RNYVTESNQVLNQEFSLVNILKQSNS------FLPHVVLGSTMLALVFPPSFTWFTARYY 137
              ++  + N  L       ++ ++++S       LP VV  + + AL +PPSFTW +   Y
Sbjct:    83 LHW-RDGNMSLLSFCGGTDVTEKADSSQFWSALLPFVVALTAVAALSYPPSFTWVSKDLY 141

Query:   138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
             APALG +M ++G+  S  DF  AFKRP  +  G+V Q+V+KP+LG +      + FG+P 
Sbjct:   142 APALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLLGVLVA----NAFGMPR 197

Query:   198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
                AG +L  CV+GAQLS+YA+ L+   +A +SI++TS +T  +V  TPLLS LLIG  +
Sbjct:   198 TFYAGFILTCCVAGAQLSSYASSLSKADVA-MSILLTSSTTIASVIFTPLLSGLLIGSVV 256

Query:   258 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI 317
             PVD   M  SILQ+V+VPI  GL+LN +   +   ++P +P ++++ T+ C+G+PL+IN 
Sbjct:   257 PVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVAMVCTSLCIGSPLSINR 316

Query:   318 ESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLAL 377
               ++S  G         FH  AF  GY  + +      +   + RT+S  TGMQSS LA 
Sbjct:   317 SQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEE--EVSRTISLCTGMQSSTLAG 374

Query:   378 ALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 411
              LA++F      +VP A S V+M++MG  L   W
Sbjct:   375 LLASQFLGSSQ-AVPAACSVVVMAIMGLCLASFW 407

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 113/319 (35%), Positives = 180/319 (56%)

Query:    94 LNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSF-TWFTARYYAPALGFLMFAVGVNS 152
             L+Q   ++ +L  +  F   V+LG+  L  +F PS  TW     +   LGFLM ++G+  
Sbjct:    91 LSQYEKIIELL--TTLFPLWVILGT--LVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTL 146

Query:   153 SEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 212
             + +DF    + P  +  G++ Q+++KPILG++   I++++  L  P+  G++LVSC  G 
Sbjct:   147 TFEDFRRCLRNPWTVGVGFLAQYMIKPILGFL---IAMTL-KLSAPLATGLILVSCCPGG 202

Query:   213 QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIV 272
             Q SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q+V
Sbjct:   203 QASNVATYISKGNVA-LSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVV 261

Query:   273 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXX 332
             +VP   G+L N FFP+  + I    P + V++T     +P+   +  V+   G       
Sbjct:   262 LVPTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIG-QVADVLKTQGAQLILPV 320

Query:   333 XXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVP 392
                H +AF  GY ++  +F E+       RT+S E GMQSS L   LA + F +PLV+VP
Sbjct:   321 ALLHAAAFAIGYWISKFSFGES-----TSRTISIECGMQSSALGFLLAQKHFTNPLVAVP 375

Query:   393 PAISTVIMSLMGFFLVMLW 411
              A+S V M+L G  L + W
Sbjct:   376 SAVSVVCMALGGSGLAVFW 394

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 120/380 (31%), Positives = 193/380 (50%)

Query:    46 PVHFRSISHSNLKFG-SSRNFVTNSVSE-NIS---GPFDQDP-----DRNYVTESNQVLN 95
             P+H R+IS S L +  SSR     + S   IS     FD  P       +  TE  +   
Sbjct:    28 PLHLRTISCSRLSYSPSSREISLKTQSTVPISCRRSRFDFVPRCGISSNDLPTEKKKSFG 87

Query:    96 QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK 155
             +    V     S +F   V LG  +L L+ P +F W T  +    L   M  +G+  +  
Sbjct:    88 EWVEFVGEAV-STAFPIWVSLGC-LLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLD 145

Query:   156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 215
             D   A   P  +FAG++ Q+ V P+  +    +S  +  LP    AG++LV C  G   S
Sbjct:   146 DLRGALSMPKELFAGFLLQYSVMPLSAFF---VS-KLLNLPPHYAAGLILVGCCPGGTAS 201

Query:   216 NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 275
             N  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ+V++P
Sbjct:   202 NIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLP 260

Query:   276 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXF 335
             + AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G          
Sbjct:   261 VLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLL 319

Query:   336 HLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAI 395
             H+S F+ GY+ + +      DV A  RT+S E GMQ+S+L + LA + F +PL +VP A+
Sbjct:   320 HISGFLFGYLFSRIL---GIDV-ASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAV 375

Query:   396 STVIMSLMGFFLVMLWAKKS 415
             S+V  S++G  L  +W + +
Sbjct:   376 SSVCHSILGSVLAGIWRRSA 395

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 95/296 (32%), Positives = 149/296 (50%)

Query:   121 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 180
             +A   P  F    + Y    LG +MF +G+     DF     +P  +  G   QF++ P+
Sbjct:    25 IAYFIPAPFLGLNS-YITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFIIMPL 83

Query:   181 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 240
             + Y+       V  LP  + AG++L+  V G   SN   +L    LA LSI MTSLST  
Sbjct:    84 VAYVLAY----VMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLA-LSIAMTSLSTLL 138

Query:   241 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300
             A   TPL+ LLL G+ +PV+   M  SI+Q++++PI  GL++ +FFP+        +P +
Sbjct:   139 APIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFI 198

Query:   301 SVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKAL 360
             SVL     V A ++ N+ S+ S  G          +   F+ GY+    AF    D +  
Sbjct:   199 SVLAIIIIVSAVVSANVSSITSS-GLLILIAVMLHNAFGFLLGYIT---AFILKLD-EGT 253

Query:   361 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 416
             +R +S E GMQ+S L +ALA   F  P  ++P  ++ V  ++ G  L  +W+K ++
Sbjct:   254 RRAISIEVGMQNSGLGVALATAHF-GPAAALPSVLAAVWHNIAGPILATIWSKNAK 308

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 94/308 (30%), Positives = 155/308 (50%)

Query:   108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
             N   P   L   + A + P  F  F      P L  +M ++G+    +DF  AFK+  A+
Sbjct:     5 NRLFPLFALLGAVTAYLMPAWFVVFK-NSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 286
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   287 PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVV 346
             P++   + P LP +S++     +   +A+N     +  G          +      GY+ 
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLC 236

Query:   347 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFF 406
               L    +H V    +T+S E G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  
Sbjct:   237 CRL-LGFSHTVC---KTISIEVGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAM 291

Query:   407 LVMLWAKK 414
             L   WA +
Sbjct:   292 LAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 94/308 (30%), Positives = 155/308 (50%)

Query:   108 NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167
             N   P   L   + A + P  F  F      P L  +M ++G+    +DF  AFK+  A+
Sbjct:     5 NRLFPLFALLGAVTAYLMPAWFVVFK-NSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   168 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 227
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   228 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 286
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   287 PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVV 346
             P++   + P LP +S++     +   +A+N     +  G          +      GY+ 
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLC 236

Query:   347 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFF 406
               L    +H V    +T+S E G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  
Sbjct:   237 CRL-LGFSHTVC---KTISIEVGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAM 291

Query:   407 LVMLWAKK 414
             L   WA +
Sbjct:   292 LAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SPO_0797 SPO_0797 "bile acid transporter family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 185 (70.2 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 73/285 (25%), Positives = 129/285 (45%)

Query:   141 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTP-I 199
             L  +MF++ ++ +  DF    + P  +  G   QFVV P+L   F  + ++    P P I
Sbjct:    23 LAVVMFSIAIDLTLDDFRRLSRGPKPVLVGLFSQFVVLPVL--TFALVWLTA---PHPSI 77

Query:   200 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLP- 258
               G++LV+   G  +SN+ T       A LS+ MT+ +T  A+ +TP  ++ L G   P 
Sbjct:    78 ALGLILVAACPGGNISNFITHRAGGNAA-LSVSMTAFATVGAIVMTPA-NIALWGSLYPP 135

Query:   259 ---------VDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV 309
                      +D   +  ++  ++++P+  G+ LN   P +   +R  L  LS+ +    +
Sbjct:   136 TRAILQETHIDPVQIAITVGLMLILPLILGVTLNMRRPALTARLRRPLQLLSMGIFIAFI 195

Query:   310 GAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 369
                LA N    +S F           +  A   G+VV  L     +D    +R ++ ETG
Sbjct:   196 ILALAANWGYFLS-FAGAVAGLVILHNALALGGGWVVATLTRLSPYD----RRAVTIETG 250

Query:   370 MQSSLLALALANRFFQD-PLVSVPPAISTVIMSLMGFFLVMLWAK 413
             +Q+S L L L   FF     ++V  A   +  ++ G  L M+ ++
Sbjct:   251 IQNSGLGLVLIFAFFNGLGGMAVAAAFWGIWHAISGLGLAMIMSR 295

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0015721 "bile acid and bile salt transport" evidence=ISS

UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 76/283 (26%), Positives = 133/283 (46%)

Query:   144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGI 203
             +MF++G N   K F+   KRP  I  G++ QF + P+ G+I   +SV+ F +  P+ A +
Sbjct:     2 VMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFI---LSVA-FDI-LPLQAVV 56

Query:   204 MLV-SCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVK 262
             +L+  C  G   SN   +  D  +  LSI MT+ ST  A+ + PL   L I  ++ VD  
Sbjct:    57 VLIMGCCPGGTASNILAYWVDGDM-DLSISMTTCSTLLALGMMPLC--LFIYTKMWVDSG 113

Query:   263 GMV------SSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL-SVLVTACCVGAPLAI 315
              +V       + L  +VVP++ G+L+N  +P+    I        ++L+    V   +  
Sbjct:   114 TIVIPFDNIGTSLVALVVPVSIGMLVNHKWPQKAKIILKVGSITGAILIVLIAVVGGILY 173

Query:   316 NIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLL 375
                 +++P           F L+ +  G+++  ++    H      RT++ ETGMQ++ L
Sbjct:   174 QSAWIIAP---KLWIIGTLFPLAGYSLGFLLARISGQSWHRC----RTVALETGMQNTQL 226

Query:   376 ALALAN-RFFQDPL--VSVPPAISTVI-MSLMGFFLVMLWAKK 414
                +    F Q+ L  V   P I ++  ++    FL +  A K
Sbjct:   227 CSTIVQLSFTQEELNVVFTFPLIYSIFQLAFAAIFLGIYVAYK 269

GO:0016021 "integral to membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q650U0	BASS5_ORYSJ	No assigned EC number	0.7045	0.8413	0.8728	yes	no
Q8VYY4	BASS6_ARATH	No assigned EC number	0.7130	0.8485	0.8630	yes	no
B8BDK4	BASS5_ORYSI	No assigned EC number	0.7045	0.8413	0.8728	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.321.1 bile acid-Na+ symporter family protein (317 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	9e-49
TIGR00841	286	TIGR00841, bass, bile acid transporter	2e-44
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	8e-40
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	5e-05

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  168 bits (427), Expect = 9e-49
 Identities = 107/306 (34%), Positives = 160/306 (52%), Gaps = 12/306 (3%)

Query: 109 SFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIF 168
            FL  VVL +  +A +FP +F W        AL  +MF +G+  S +DF+   K P  + 
Sbjct: 14  IFLLWVVLLAA-IAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVL 71

Query: 169 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 228
            G   QFV+ P+L  +       +F LP  +  G++L+ C  G   SN  T+L    +A 
Sbjct: 72  IGLAAQFVLMPLLALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVA- 126

Query: 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288
           LS+  TS+ST    F+TPLL  LL G  +PVDV GM  SIL  V++P   G LL    P+
Sbjct: 127 LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186

Query: 289 ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 348
               ++  LPP+SVL     V A  +  +E+ +   GL I + +I  +L   + GY    
Sbjct: 187 WVERLKKALPPVSVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLGLLLGYFGAR 245

Query: 349 LAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLV 408
           L   +    KA + T++ E GMQ+  L  ALA  FF +PL+++P AI +V  ++ G  L 
Sbjct: 246 LLGFD----KADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLA 301

Query: 409 MLWAKK 414
            L+A++
Sbjct: 302 GLYARR 307

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  155 bits (394), Expect = 2e-44
 Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 16/289 (5%)

Query: 129 FTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188
            T  +       L  +MF++G     +DF    ++P  +  G + Q+ + P+ G++    
Sbjct: 3   STNLST-ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA-- 59

Query: 189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLL 248
              VF LP  +  G+++V C  G   SN  T+L    +A LSI MT+ ST  A+ + PLL
Sbjct: 60  --KVFKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLL 116

Query: 249 SLLLIGKRLPVDVKGMVSSI---LQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 305
             +     +   +      I   L IV++P++ G+L+    P+I   I   +  +SV + 
Sbjct: 117 LYIYAKMWVDGTLVVPYLGIGLSLVIVLIPVSIGMLVKHKLPQIAKIIL-KVGLISVFLL 175

Query: 306 ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 365
           +  +     IN+E+ ++  G  +LL+ I   L+ F+ GY++  LA        A  RT+S
Sbjct: 176 SVIIAVVGGINVEN-LATIGPLLLLVGILLPLAGFLLGYLLAKLAGLP----WARCRTIS 230

Query: 366 YETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 414
            E GMQ+S L   +A   F  P V+VP AI  +I +L      +L+   
Sbjct: 231 IEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLII 278

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  140 bits (355), Expect = 8e-40
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 10/192 (5%)

Query: 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197
              L  +MF++G+    +DF E F+RP A+  G + Q+V+ P+L +I       +  LP 
Sbjct: 1   PLGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWF---LLRLPP 57

Query: 198 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 257
            +  G++LV C  G  +SN  T+L    +  LS+VM +LST TA  VTPLLS LL G  L
Sbjct: 58  ELAVGLILVGCAPGGAMSNVWTYLAKGDVE-LSVVMVALSTLTAPLVTPLLSFLLSGLLL 116

Query: 258 PVDVK----GMVSSILQIVVVPIAAGLLLNRFFPR--ICNAIRPFLPPLSVLVTACCVGA 311
            V        ++ S+L  V++P+ AG+L   F PR      I P LPP+S++     +  
Sbjct: 117 DVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVV 176

Query: 312 PLAINIESVMSP 323
             ++  E + S 
Sbjct: 177 IFSLKGEVIASL 188

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 41/247 (16%)

Query: 114 VVLGSTMLALVFPPS---FTWFTARYYAPALGFLMFAV-GVNSSEKDFIEAFKRPAAIFA 169
            ++ + +LA +FP          A Y       L+F + G+  S ++ +   +       
Sbjct: 6   ALVLAILLASLFPVPGAAGGPIRAEYVTTYAVALIFFLSGLKLSTEELLAGLRNWRLHLF 65

Query: 170 GYVGQFVVKPILGYIFGTISVSVFG------------LPTPIGAGIMLVSCVSGAQLSNY 217
             +  FV+ P+LG     +  +               LPT + + + + S   G      
Sbjct: 66  VQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGG------ 119

Query: 218 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLL-SLLLIGKRLPVDVKGMVSSILQIVVVPI 276
                +   A   +   S+S    VF+TPLL  LLL G    VD+  ++  +L  +++P 
Sbjct: 120 -----NVAAA---VCSASISNLLGVFLTPLLVGLLLGGGGGGVDLGAVLKKLLLQLLLPF 171

Query: 277 AAGLLLNRFFPRICNAIRPFLPPLS----VLV--TACCV----GAPLAINIESVMSPFGL 326
             G LL   FP+     +  L  +     +L+  TA       G   +++   ++  F L
Sbjct: 172 VLGQLLRPLFPKWVARHKKLLKKVDRSSILLIVYTAFSTAFVEGIWHSVSHSILLVIFAL 231

Query: 327 TILLLII 333
            +LLL +
Sbjct: 232 GLLLLFV 238

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.97
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.96
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	99.13
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	98.88
PRK09903	314	putative transporter YfdV; Provisional	98.73
COG0679	311	Predicted permeases [General function prediction o	98.56
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.49
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.35
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.35
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.12
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.88
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	97.65
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.54
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.27
PLN03159	832	cation/H(+) antiporter 15; Provisional	97.19
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.77
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.27
PRK05326	562	potassium/proton antiporter; Reviewed	96.03
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	95.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.89
PRK10669	558	putative cation:proton antiport protein; Provision	94.88
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	94.73
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	94.66
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.42
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	93.54
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	93.46
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	93.28
PRK10711	231	hypothetical protein; Provisional	92.93
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	92.84
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	92.72
PRK04288	232	antiholin-like protein LrgB; Provisional	92.54
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	92.0
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	91.86
COG2855	334	Predicted membrane protein [Function unknown]	91.56
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.35
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	90.85
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	88.61
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	87.98
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	87.93
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	87.54
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	85.04
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	83.63
TIGR00698	335	conserved hypothetical integral membrane protein.	82.91
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	82.29
PRK02830	202	Na(+)-translocating NADH-quinone reductase subunit	81.79

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=1.3e-52  Score=411.55  Aligned_cols=304  Identities=34%  Similarity=0.553  Sum_probs=281.3

Q ss_pred             HHHHHHh-hhHHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH
Q 014893          101 VNILKQS-NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP  179 (416)
Q Consensus       101 ~~~l~~l-~~~l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P  179 (416)
                      .+.++.. .+.+++++++...++...|+.+.+++ .+++++++++||.||++++.+|+++..+|||.+++++.+||++||
T Consensus         4 ~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP   82 (319)
T COG0385           4 LRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP   82 (319)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            4444333 34488999999999999999999996 688899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893          180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV  259 (416)
Q Consensus       180 lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v  259 (416)
                      +++++++    ..+++|++++.|+++++|||||+.||+||+++|||+ ++|+++|.+||+++++++|+++.++.|+.+++
T Consensus        83 lla~~~~----~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~  157 (319)
T COG0385          83 LLALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPV  157 (319)
T ss_pred             HHHHHHH----HHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999    467799999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 014893          260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA  339 (416)
Q Consensus       260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~  339 (416)
                      |.+++++++++.+++|+++|+.+|++.|++.++.+|.+++++..+++++++..++.+++.+.+ .+..+.+++++++.++
T Consensus       158 ~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~-~~~~v~~~v~~~n~lg  236 (319)
T COG0385         158 DVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLG  236 (319)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988877665 3456778889999999


Q ss_pred             HHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893          340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  415 (416)
Q Consensus       340 f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~q~i~~~~la~~w~~r~  415 (416)
                      |..||+.+|+ ++.++   +|++|+++|+|+||.++|+++|..||++|.+++|.++|+++|++.+++++.+|+||.
T Consensus       237 ~~~gy~~ar~-~g~~~---a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~  308 (319)
T COG0385         237 LLLGYFGARL-LGFDK---ADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI  308 (319)
T ss_pred             HHHHHHHHHH-hCCCh---hheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999985 57775   899999999999999999999999776699999999999999999999999999873

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=1.9e-44  Score=360.87  Aligned_cols=280  Identities=15%  Similarity=0.228  Sum_probs=241.1

Q ss_pred             HHHHHHHHHHHHhhcCcchhhhhhh----hH---HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHH
Q 014893          111 LPHVVLGSTMLALVFPPSFTWFTAR----YY---APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGY  183 (416)
Q Consensus       111 l~l~v~~~~~~g~~~P~~~~~l~~~----~i---~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~  183 (416)
                      +...++.+.++|+.+|..+.++...    ..   ...+++|||+||++++.+|+++.+||||.+..+++.||+++|+++|
T Consensus        12 ~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~   91 (328)
T TIGR00832        12 IFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMF   91 (328)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            4444455779999999998887521    11   2356789999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhC--------C
Q 014893          184 IFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG--------K  255 (416)
Q Consensus       184 ~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g--------~  255 (416)
                      +++++   ++++++++++|+++++||||+++||+||+++|||+ ++|+++|.++++++++++|.++.++.|        +
T Consensus        92 ~l~~l---~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-alsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~  167 (328)
T TIGR00832        92 LLAWL---FLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLT  167 (328)
T ss_pred             HHHHH---HcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            99952   45899999999999999999999999999999999 899999999999999999999998876        3


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HHcccCChHHHHHHHHHHHHHHHhhhhhhhchhh--HH
Q 014893          256 RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LT  327 (416)
Q Consensus       256 ~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~-----~~~-~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~--~~  327 (416)
                      .+++|+.+++++++.++++|+++|+.+|++.|+     +.+ +.++..+.++.+++.+++...++.|++.+.++..  ..
T Consensus       168 ~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~  247 (328)
T TIGR00832       168 VITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIAL  247 (328)
T ss_pred             eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            578999999999999999999999999999984     333 7777888888888888888888999887776422  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH
Q 014893          328 ILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV  398 (416)
Q Consensus       328 i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v  398 (416)
                      +.+++++++.++|.+||+++|. ++.++   +|++|+++|+|+||.++|+++|..+|++++.+.++++|..
T Consensus       248 ~~~~v~l~~~~~~~lg~~~~r~-~~l~~---~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~  314 (328)
T TIGR00832       248 IAIPLLIYFYIMFFLTFALAKK-LGLPY---SITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGP  314 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCcCh---hhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhh
Confidence            4456789999999999999984 57776   8999999999999999999999999987666666666654

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=3.5e-42  Score=338.68  Aligned_cols=272  Identities=30%  Similarity=0.479  Sum_probs=247.5

Q ss_pred             hhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcC
Q 014893          130 TWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV  209 (416)
Q Consensus       130 ~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~  209 (416)
                      +++. +++.+.++++||.+|++++.+|+++.++||+.+..+++.|++++|+++|+++    ..++++++++.|++++++|
T Consensus         4 ~~~~-~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~~   78 (286)
T TIGR00841         4 TNLS-TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGCC   78 (286)
T ss_pred             hhHH-HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheeeC
Confidence            3443 5666779999999999999999999999999999999999999999999998    4678999999999999999


Q ss_pred             CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014893          210 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRF  285 (416)
Q Consensus       210 Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v----~vd~~~i~~~Ll~~vllPl~lG~llr~~  285 (416)
                      ||+..+++||+++|||. +++..++.++|+++++++|+++.++.+...    ++|+++++.+ +.++++|+++|+++|++
T Consensus        79 P~~~~s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~  156 (286)
T TIGR00841        79 PGGTASNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHK  156 (286)
T ss_pred             CCchHHHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999 899999999999999999999999876544    4999999999 89999999999999999


Q ss_pred             hHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhee
Q 014893          286 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS  365 (416)
Q Consensus       286 ~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~  365 (416)
                      .|+..++.++ .+.++.+.+.+++...++.|.+.+.++ .+.++++++++++++|.+||+.+|. ++.++   +|++|++
T Consensus       157 ~p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~-~~l~~---~~~~t~~  230 (286)
T TIGR00841       157 LPQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKL-AGLPW---ARCRTIS  230 (286)
T ss_pred             hHHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH-hCCCH---hhheeee
Confidence            9999888888 899999888888887888888777664 4567788899999999999999974 56665   7999999


Q ss_pred             eecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893          366 YETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  415 (416)
Q Consensus       366 ~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~q~i~~~~la~~w~~r~  415 (416)
                      +|+|+||.++|+++|.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus       231 ~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~  279 (286)
T TIGR00841       231 IEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH  279 (286)
T ss_pred             eeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 89999999999999999999999998764

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=7.3e-39  Score=318.65  Aligned_cols=298  Identities=21%  Similarity=0.333  Sum_probs=261.0

Q ss_pred             hHHHHHHHHHHHHHhhcCcchhhhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHH
Q 014893          109 SFLPHVVLGSTMLALVFPPSFTWFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI  184 (416)
Q Consensus       109 ~~l~l~v~~~~~~g~~~P~~~~~l~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~  184 (416)
                      +|+++.+++++.+|+.+|+.+....    +....+.+++++|.+|++++.+|+++..+|||.++.++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999987432    234557899999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 014893          185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK  262 (416)
Q Consensus       185 l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~-g~~v~vd~~  262 (416)
                      +.++.  ...++++++.|+++++|+|++..|+ +||+.+|||. ++++.++.++|+++++++|+++.++. ++..++|+.
T Consensus        81 ~~~l~--~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~  157 (313)
T PF13593_consen   81 LSRLF--PAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA  157 (313)
T ss_pred             HHHHh--hccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence            98531  1247899999999999999998887 5999999999 89999999999999999999999998 778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhh-hhhhchhh----HHHHHHHHHHHH
Q 014893          263 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHL  337 (416)
Q Consensus       263 ~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~-~~i~~~~~----~~i~~~~i~~~l  337 (416)
                      +++.++...+++|+++|+++|++.+++.+|.++.++.++...++++++..++... +..+++..    ..+....+.++.
T Consensus       158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~  237 (313)
T PF13593_consen  158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL  237 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887652 22332221    234455777888


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCC-C---cchhHHHHHHHHHHHHHHHHHHHHhh
Q 014893          338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK  413 (416)
Q Consensus       338 ~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~-p---~~alp~~iy~v~q~i~~~~la~~w~~  413 (416)
                      ..+.++++.+|. ++.++   +|++++.|++++||.++|++++...|++ |   .+.+|.++||..|.++++.++.+|+|
T Consensus       238 ~~l~~~~~~~r~-~~~~~---~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r  313 (313)
T PF13593_consen  238 VVLVLGWLAARL-LGFSR---PDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHHHHhh-cCCCh---hhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            889999999884 57776   8999999999999999999999999974 3   57999999999999999999999976

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=275.93  Aligned_cols=308  Identities=15%  Similarity=0.214  Sum_probs=264.2

Q ss_pred             hhchHHHHHHHhhhHHHHHHHH----HHHHHhhcCcchhhhh-------hhhHHHHHHHHHHHhcCCCCHHHHHHHhhch
Q 014893           96 QEFSLVNILKQSNSFLPHVVLG----STMLALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRP  164 (416)
Q Consensus        96 ~~~~~~~~l~~l~~~l~l~v~~----~~~~g~~~P~~~~~l~-------~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p  164 (416)
                      +++..++.++.++|+++.|+..    |+.+|..+|+.+..+.       +..+.+.+.+|||.+.+++|.++++++.|++
T Consensus         1 ~~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~   80 (342)
T COG0798           1 MKMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP   80 (342)
T ss_pred             CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence            3567788899999998877766    5566677788554432       2345568999999999999999999999999


Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 014893          165 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV  244 (416)
Q Consensus       165 ~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~  244 (416)
                      |.+.+.++.|+++.|+++|+++++   +++..|++.+|+++++.+||..++.+|+++++||. .++++.++++.++++++
T Consensus        81 k~L~lsL~~Nwii~P~lm~~la~~---fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~  156 (342)
T COG0798          81 KPLILSLFVNWIIGPLLMFALAWF---FLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVL  156 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHH
Confidence            999999999999999999999974   45778899999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHcccCChHHHHHHHHHHHHHHHhhh
Q 014893          245 TPLLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINI  317 (416)
Q Consensus       245 ~Pl~l~ll~g~~-v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~------~~~~i~~~l~~ls~l~llliv~~~~~~n~  317 (416)
                      .|.+..+++|.. +++|++++.+++++.+.+|+++|++.|++..|      ..+++.|..++++..++++.++..++.+.
T Consensus       157 y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg  236 (342)
T COG0798         157 YAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQG  236 (342)
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhH
Confidence            999999998764 88999999999999999999999999998643      24678888999999999999999999999


Q ss_pred             hhhhchhh--HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC-CCcchhHHH
Q 014893          318 ESVMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPA  394 (416)
Q Consensus       318 ~~i~~~~~--~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~-~p~~alp~~  394 (416)
                      +.+.+++.  ..+++..++.....+.++|+++|. .+.+.   +|+.+++++++.+|..+|+++|.+.|+ +...++.++
T Consensus       237 ~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~-lgl~y---~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~v  312 (342)
T COG0798         237 EQIVEQPLDILLIAIPLLIYFLLMFFISYFIAKA-LGLPY---EDAAALVFTGASNNFELAIAVAIALFGLTSGAALATV  312 (342)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCh---hhhhceeeeeccccHHHHHHHHHHhcCccccchhhhh
Confidence            99888754  345667888888999999999985 47776   899999999999999999999999998 566777778


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 014893          395 ISTVIMSLMGFFLVMLW  411 (416)
Q Consensus       395 iy~v~q~i~~~~la~~w  411 (416)
                      +..+++..+=-.++..+
T Consensus       313 igpLvEVpvml~lV~v~  329 (342)
T COG0798         313 VGPLVEVPVMLGLVKVA  329 (342)
T ss_pred             ccchhhHHHHHHHHHHH
Confidence            88777765544444443

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.97  E-value=1.6e-30  Score=240.81  Aligned_cols=180  Identities=30%  Similarity=0.554  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHH
Q 014893          139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA  218 (416)
Q Consensus       139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~  218 (416)
                      +.++++||.+|+++++||+++..||||.++.++++||+++|+++|++++   .+++++++++.|+++++||||++.+++|
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~~~s~~~   78 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGGPASNVF   78 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence            5789999999999999999999999999999999999999999999984   3678999999999999999999999999


Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHH
Q 014893          219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNAI  293 (416)
Q Consensus       219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd---~~~i~~~Ll~~vllPl~lG~llr~~~p--~~~~~i  293 (416)
                      |+++|||. ++++++|.++++++++++|+++.++.+...++|   +++++.+++.++++|+++|+++|++.|  +..+++
T Consensus        79 t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~  157 (187)
T PF01758_consen   79 TYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRL  157 (187)
T ss_dssp             HHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHH
T ss_pred             HHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999999 899999999999999999999999988877777   999999999999999999999999999  888999


Q ss_pred             cccCChHHHHHHHHHHHHHHHhhhhhhhc
Q 014893          294 RPFLPPLSVLVTACCVGAPLAINIESVMS  322 (416)
Q Consensus       294 ~~~l~~ls~l~llliv~~~~~~n~~~i~~  322 (416)
                      ++..+.++.+++++++...++.|.+.+.+
T Consensus       158 ~~~~~~~s~~~l~~~i~~~~~~~~~~i~~  186 (187)
T PF01758_consen  158 KPFLKPLSFILLLLIIVLIFASNASVIAS  186 (187)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence            99999999999999988888888776543

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.7e-29  Score=250.73  Aligned_cols=279  Identities=43%  Similarity=0.686  Sum_probs=244.1

Q ss_pred             HHHHHHHHHHHHHhhcC-cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhh
Q 014893          110 FLPHVVLGSTMLALVFP-PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI  188 (416)
Q Consensus       110 ~l~l~v~~~~~~g~~~P-~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l  188 (416)
                      .+++............| ..+.|+.....++.+.++|+++|++.|.+++++.+++|..+.+|++.||+++|+.+|.++  
T Consensus        87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~--  164 (371)
T KOG2718|consen   87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS--  164 (371)
T ss_pred             chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh--
Confidence            35666777777777887 778888767778899999999999999999999999999999999999999999999998  


Q ss_pred             hhhccCCChHHHHHHHHHhcCCchhhHHHH-HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHH
Q 014893          189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYA-TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSS  267 (416)
Q Consensus       189 ~~~~~~l~~~la~GliL~a~~Pg~~~s~v~-T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~  267 (416)
                        ..+.+|...++|++++.|+++++.+++. +...+||+ ++++.+|.++|+.+++++|++-.++.+..++.|...+..+
T Consensus       165 --~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s  241 (371)
T KOG2718|consen  165 --KVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS  241 (371)
T ss_pred             --hHhhCCccccceeEEEEeccCCcchhhheeecCCcch-hhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence              4677888887788888888777777655 55559999 8999999999999999999999999888889999988889


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893          268 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT  347 (416)
Q Consensus       268 Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~  347 (416)
                      .+.++.+|+.+|.++|+++|+..+.+++.++.+++....+.+......|.+.+.. +++.+......+++.+|..||+++
T Consensus       242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~  320 (371)
T KOG2718|consen  242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLS  320 (371)
T ss_pred             hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999888888888888876666 678899999999999999999996


Q ss_pred             HHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH
Q 014893          348 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV  398 (416)
Q Consensus       348 ~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v  398 (416)
                      +...   .| +++++|+++|+|+||..++++++...++||.++.|++...+
T Consensus       321 ~~~~---~~-~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v  367 (371)
T KOG2718|consen  321 FSPL---DD-VATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSV  367 (371)
T ss_pred             cccc---ch-hhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhh
Confidence            4222   21 36999999999999999999999999999988887765543

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=99.13  E-value=6.7e-11  Score=109.80  Aligned_cols=192  Identities=14%  Similarity=0.200  Sum_probs=150.6

Q ss_pred             hHHHHHHHh-hhHHHHHHHHHHHHHhhcCcchhh---hhhhhH-H-HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHH
Q 014893           99 SLVNILKQS-NSFLPHVVLGSTMLALVFPPSFTW---FTARYY-A-PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYV  172 (416)
Q Consensus        99 ~~~~~l~~l-~~~l~l~v~~~~~~g~~~P~~~~~---l~~~~i-~-~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~  172 (416)
                      =++|..++. ++|+...+.++...+-+-|..+..   ++++|. . +..+-+++..|++++.|++..+.+||+..+.+++
T Consensus        12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI   91 (287)
T KOG4821|consen   12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILI   91 (287)
T ss_pred             HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHH
Confidence            345566665 478888888888888888887643   333332 2 3677788999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893          173 GQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  251 (416)
Q Consensus       173 ~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l  251 (416)
                      ....+.|-..|++..+. ..-+.+.++..|+.+.+|+|++.+|++ .|..+|||.+++.+....++.++++...|-....
T Consensus        92 ~~Ll~tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~  170 (287)
T KOG4821|consen   92 LSLLITPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQM  170 (287)
T ss_pred             HHHHHhHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999987431 223467789999999999999999997 8999999986666667778888888888888877


Q ss_pred             hhCC------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014893          252 LIGK------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN  291 (416)
Q Consensus       252 l~g~------------~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~  291 (416)
                      ++..            .+..-+.-++.+....+++|...|...+..+|+-+.
T Consensus       171 LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  222 (287)
T KOG4821|consen  171 LLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA  222 (287)
T ss_pred             HHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence            6521            122335566777777899999999999999887443

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=98.88  E-value=4.6e-08  Score=97.85  Aligned_cols=143  Identities=16%  Similarity=0.182  Sum_probs=112.3

Q ss_pred             HHHHHhhhH-HHHHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893          102 NILKQSNSF-LPHVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV  177 (416)
Q Consensus       102 ~~l~~l~~~-l~l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi  177 (416)
                      +.++++-++ ..+..++|.   ..|+-.|+......+........+.|+..|+.++.++.+   ++++......+.++++
T Consensus       174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil  250 (321)
T TIGR00946       174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV  250 (321)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence            344444444 334444444   344555766554443444567889999999988877653   4567778888999999


Q ss_pred             HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll  252 (416)
                      .|+++++++    ..++++++.....++++++|++..+.++++..|+|. .++...+.++|+++.+++|+++.++
T Consensus       251 ~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       251 QPAVMAGIS----KLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988    467889999999999999999999999999999999 8999999999999999999999864

>PRK09903 putative transporter YfdV; Provisional

Probab=98.73  E-value=2.4e-07  Score=92.57  Aligned_cols=142  Identities=13%  Similarity=0.083  Sum_probs=107.7

Q ss_pred             HHHHHhhhH-HHHHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893          102 NILKQSNSF-LPHVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV  177 (416)
Q Consensus       102 ~~l~~l~~~-l~l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi  177 (416)
                      +.++++-++ ..+..++|.   ..|+-.|+...+..+........+.|+..|..+...+++   .+ +....+.+.++++
T Consensus       165 ~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~  240 (314)
T PRK09903        165 SALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLIL  240 (314)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHH
Confidence            445554444 233333443   344556776655443334457888999999988776542   22 3455677889999


Q ss_pred             HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll  252 (416)
                      .|++++++.    ...+++++...-.++++++|.+..+.+++...|+|. .++.....++|+++.+++|+++.++
T Consensus       241 ~P~i~~~~~----~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        241 MPLALLLVG----MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHH----HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998876    456888988889999999999999999999999999 8999999999999999999999875

>COG0679 Predicted permeases [General function prediction only]

Probab=98.56  E-value=2.1e-06  Score=85.83  Aligned_cols=148  Identities=18%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             hHHHHHHHhhhHHH-HHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHH
Q 014893           99 SLVNILKQSNSFLP-HVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQ  174 (416)
Q Consensus        99 ~~~~~l~~l~~~l~-l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~  174 (416)
                      +..+.++++.++.+ +..+++.   ..|+-.|+......+........+.|+..|++++.+..+  ..+++........+
T Consensus       157 ~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--~~~~~~~~~~~~~k  234 (311)
T COG0679         157 SLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLK--GSKPPIILIALSLK  234 (311)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--cccchhHHHHHHHH
Confidence            34556666666622 3333444   335667775554433334457889999999999994432  23355566667779


Q ss_pred             HhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893          175 FVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (416)
Q Consensus       175 fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~  253 (416)
                      ++++|+++++.+    ..++++++....+++.+++|++..+.+++...|+|. .++.....++|+++.+.+|.+...+.
T Consensus       235 ll~~Pl~~~~~~----~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         235 LLLAPLVALLVA----KLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHHHHHH----HHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988    578899988888899999999999999999999999 89999999999999999999988764

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.49  E-value=8e-06  Score=81.04  Aligned_cols=276  Identities=18%  Similarity=0.240  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHhhcCcchhhh--h----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHH
Q 014893          112 PHVVLGSTMLALVFPPSFTWF--T----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF  185 (416)
Q Consensus       112 ~l~v~~~~~~g~~~P~~~~~l--~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l  185 (416)
                      ..=++++.++.-++|+....-  .    +.-..+.+++.+|++|.+++.|+..+.+||---+   ++.++++-=++++.+
T Consensus        16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~   92 (312)
T PRK12460         16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLV   92 (312)
T ss_pred             HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHH
Confidence            333567778888999874321  1    1234578999999999999999999888885533   356777777778777


Q ss_pred             HhhhhhccCCChHHHH-HHHHHhcCC---chhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccCh
Q 014893          186 GTISVSVFGLPTPIGA-GIMLVSCVS---GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDV  261 (416)
Q Consensus       186 ~~l~~~~~~l~~~la~-GliL~a~~P---g~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~  261 (416)
                      ++    +++.+.-..+ .+.+++++-   |+.+...+....+-+   =.-.....+.--+|+++=+.+...  .--++|+
T Consensus        93 ~~----~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~---d~gA~~~~sl~~GPf~tm~aLga~--gLA~ip~  163 (312)
T PRK12460         93 GK----FFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDER---DVGAISILSLNDGPFFTMLALGAA--GLANIPI  163 (312)
T ss_pred             HH----HcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHh---hhhHHhhhhhccCcHHHHHHHHHH--HHhcCCh
Confidence            74    4553332111 122233222   222333344443332   233333333334444443322211  1123554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 014893          262 KGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFV  341 (416)
Q Consensus       262 ~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~  341 (416)
                      .    .+. -.++|+++|++++...+++.+..++-.+.   ...+.++..-...|-+.+.+ .++.-++..++...+.+.
T Consensus       164 ~----~lv-~lilpILiGmilGNld~~~~~~l~~Gi~f---~I~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~~t~~  234 (312)
T PRK12460        164 M----ALV-AALLPLVLGMILGNLDPDMRKFLTKGGPL---LIPFFAFALGAGINLSMLLQ-AGLAGILLGVLVTIVTGF  234 (312)
T ss_pred             H----HHH-HHHHHHHHHHHHhccchhhHHHHhccceE---eHHHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHHHHHH
Confidence            3    233 38899999999999888777777776553   11111111112233334444 345445555666677888


Q ss_pred             HHHHHHHHhhccccccchhhhheeeecccccHH-HHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHHHHHhhcc
Q 014893          342 AGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLVMLWAKKS  415 (416)
Q Consensus       342 lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~-Lal~lA~~--~f~~p~~alp---~~iy~v~q~i~~~~la~~w~~r~  415 (416)
                      .+|+++|.+ +.+     +..+...++..-|.. -+.+++..  .+. |.+...   ++...++..+...++..||.||.
T Consensus       235 ~~~~i~rll-g~~-----~~~g~li~stAGnAIcgpAAVaAadP~~~-~~~~~Ataqvaa~vivTail~P~~t~~~~k~~  307 (312)
T PRK12460        235 FNIFADRLV-GGT-----GIAGAAASSTAGNAVATPLAIAAADPSLA-PVAAAATAQVAASVIVTAILTPLLTSWVAKKE  307 (312)
T ss_pred             HHHHHHHHh-CCC-----hhHHHHHHHHhhHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999754 543     233444443344432 22233322  221 211111   23345677778888888887664

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=98.35  E-value=9e-05  Score=73.42  Aligned_cols=285  Identities=18%  Similarity=0.303  Sum_probs=153.5

Q ss_pred             HHHHHhhhH----HHHHHHHHHHHHhhcCcchhhh---hh---hhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHH
Q 014893          102 NILKQSNSF----LPHVVLGSTMLALVFPPSFTWF---TA---RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY  171 (416)
Q Consensus       102 ~~l~~l~~~----l~l~v~~~~~~g~~~P~~~~~l---~~---~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l  171 (416)
                      |..+.++|.    +..=++++.++.-++|+.++..   .+   .-..+.+++.+|++|.++++|+..+.+||--.+   +
T Consensus         2 kI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l---l   78 (314)
T PF03812_consen    2 KIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL---L   78 (314)
T ss_pred             ChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---H
Confidence            344455544    5555667888889999986522   11   123468899999999999999999999875544   4


Q ss_pred             HHHHhHHHHHHHHHHhhhhhccCCCh---HHHHH---HHHHhcCCchh---hHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 014893          172 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAG---IMLVSCVSGAQ---LSNYATFLTDPPLAPLSIVMTSLSTATAV  242 (416)
Q Consensus       172 ~~~fvi~Plla~~l~~l~~~~~~l~~---~la~G---liL~a~~Pg~~---~s~v~T~la~Gn~aaLsl~lt~istlla~  242 (416)
                      +.++++-=++++++++    +++.+.   ....|   +.+++++....   +...+...  ||. .=.-....    ++.
T Consensus        79 ~~K~~~~~~lgl~~~~----~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~y--Gd~-~D~gA~~i----~sl  147 (314)
T PF03812_consen   79 LVKFIIGALLGLLVGK----FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQY--GDE-EDVGAFSI----LSL  147 (314)
T ss_pred             HHHHHHHHHHHHHHHH----HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHh--CCH-HHhHHHHH----HHh
Confidence            6677777777777774    454332   11122   22333332222   22233333  343 23333333    344


Q ss_pred             HHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhh
Q 014893          243 FVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESV  320 (416)
Q Consensus       243 ~~~Pl~l~ll~g~--~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i  320 (416)
                      ..-|+...+.+|.  ..++|+..     +.-.++|+++|+.+-..-|++.+..++-.+.+- -.+.+.++.  ..|-..+
T Consensus       148 ~~GPf~tMl~LG~sG~a~ip~~~-----lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lI-PF~~f~lGa--~inl~~i  219 (314)
T PF03812_consen  148 NDGPFFTMLALGASGLANIPWMS-----LVAALLPIIIGMILGNLDPDFRKFLAPGVPILI-PFFGFALGA--GINLSNI  219 (314)
T ss_pred             hhhHHHHHHHHhhccccCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeee-ehhhhhhcC--CCCHHHH
Confidence            4455555555443  34677654     345789999999999999998887777554321 111111111  2233334


Q ss_pred             hchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---H
Q 014893          321 MSPFGL-TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---P  393 (416)
Q Consensus       321 ~~~~~~-~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~--~f~~p~~alp---~  393 (416)
                      ++. +. .+++ .++..++.....|+.-|.+.+.+     .....+.++..-|. +.-.++|..  .|. |.+...   .
T Consensus       220 ~~a-Gl~GIlL-gv~~~~vtg~~~~~~dr~i~~~~-----g~aG~A~sstAGnavatPaaiA~~dP~~~-~~~~~ATaQv  291 (314)
T PF03812_consen  220 IKA-GLSGILL-GVIVVVVTGIPLYLADRLILKGN-----GVAGAAISSTAGNAVATPAAIAAADPSFA-PYAASATAQV  291 (314)
T ss_pred             HHh-CcchHHH-HHHHHHHHhHHHHHHHHHHcCCC-----CceeehHHhhhhhhhhhhHHHHHhChhhH-hhHHHHHHHH
Confidence            332 22 2322 23333334444566666443322     23334444444443 222333332  121 221111   2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccC
Q 014893          394 AISTVIMSLMGFFLVMLWAKKSE  416 (416)
Q Consensus       394 ~iy~v~q~i~~~~la~~w~~r~~  416 (416)
                      +...++..+...+++.||.||-|
T Consensus       292 AaavIvTail~P~lt~~~~kr~k  314 (314)
T PF03812_consen  292 AAAVIVTAILTPILTSWWAKRFK  314 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            34456778888899999998854

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.35  E-value=1.1e-05  Score=82.24  Aligned_cols=139  Identities=15%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             HHhhhHHHHHHHHHHHHHhhcCcch----hhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893          105 KQSNSFLPHVVLGSTMLALVFPPSF----TWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV  177 (416)
Q Consensus       105 ~~l~~~l~l~v~~~~~~g~~~P~~~----~~l~---~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi  177 (416)
                      +.+.+-..+..++|+++++.-|..-    .++.   +......+.+.||.+|..+.....+.. .+.+......+..+++
T Consensus       240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~-~~~~~~~~~~~~rlii  318 (385)
T PF03547_consen  240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSA-LGWKPSIIAVLVRLII  318 (385)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHHHH
Confidence            3333334555667777766643322    2222   122234678888888888776543322 2334445568899999


Q ss_pred             HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 014893          178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS  249 (416)
Q Consensus       178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l  249 (416)
                      +|++++++.    ..++++++....+++.+++|++..+.+++...|.|. ..+.....++++++++++|+|+
T Consensus       319 ~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  319 LPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998    467788988888899999999999999999999998 7999999999999999999973

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.12  E-value=1.2e-06  Score=89.06  Aligned_cols=228  Identities=18%  Similarity=0.218  Sum_probs=156.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHh-HHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHH
Q 014893          141 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT  219 (416)
Q Consensus       141 l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fv-i~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T  219 (416)
                      +...|+..|++++.+++.++.++++.+...+..++. ++|+..+...    ..+..++..+...+...|+|++..+|.++
T Consensus        50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls  125 (371)
T KOG2718|consen   50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLS  125 (371)
T ss_pred             HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHH
Confidence            447899999999999999999998888888889999 9999999987    45666666777888899999999999999


Q ss_pred             HhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Q 014893          220 FLTDPPLAPLSIVMTSLSTATAVFVTP-LLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIR  294 (416)
Q Consensus       220 ~la~Gn~aaLsl~lt~istlla~~~~P-l~l~ll~----g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~  294 (416)
                      .-.++|. .+...++.-.+.+.+.++| ++++=+.    +....+|...-..-++...+.|.-+|..++++.++-...+.
T Consensus       126 ~g~~~~~-~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~ls  204 (371)
T KOG2718|consen  126 FGIKLDM-DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLS  204 (371)
T ss_pred             HhcCccH-HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhH
Confidence            9999999 8999999888888777777 2222111    22333443321222344677888888888888755444444


Q ss_pred             ccCChHHHHHHHHHHHH-HHHhhhhhhhchhhHHHHHHHHHHHHHH--HHHHHHHHHHhhccccccchhhhheeeecccc
Q 014893          295 PFLPPLSVLVTACCVGA-PLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQ  371 (416)
Q Consensus       295 ~~l~~ls~l~llliv~~-~~~~n~~~i~~~~~~~i~~~~i~~~l~~--f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~r  371 (416)
                      ..+..++.++.+++.-. ........+..+ .  ..+....+.+++  +.+|+++.+.         -.+++..+++++|
T Consensus       205 ilmT~~stv~avi~~pl~s~~l~~~l~~~d-~--~~v~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~  272 (371)
T KOG2718|consen  205 ILMTTISTVLAVILTPLLSILLGRALIPVD-A--LGVIASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLP  272 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhccc-c--hhhhhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCC
Confidence            44444444433322111 111111112122 1  122224455566  8888877532         2468889999999


Q ss_pred             cHHHHHHHHHHhCC
Q 014893          372 SSLLALALANRFFQ  385 (416)
Q Consensus       372 N~~Lal~lA~~~f~  385 (416)
                      |.++...+-.-.|+
T Consensus       273 ~vsv~~t~l~~~~p  286 (371)
T KOG2718|consen  273 PVSVCLTILCLAFP  286 (371)
T ss_pred             chHHHhhhhhhcCC
Confidence            99999988877776

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.88  E-value=0.00053  Score=67.76  Aligned_cols=274  Identities=15%  Similarity=0.222  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHhhcCcchhhhh---h---hhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHH
Q 014893          113 HVVLGSTMLALVFPPSFTWFT---A---RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG  186 (416)
Q Consensus       113 l~v~~~~~~g~~~P~~~~~l~---~---~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~  186 (416)
                      +=++++.++.-++|+.+....   +   .-..+.+++.+|++|.+++.|+-.+.+||---+   ++.++++-=++++.++
T Consensus        17 VPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~   93 (314)
T TIGR00793        17 VPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS   93 (314)
T ss_pred             HHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH
Confidence            335677788889999854421   1   123468999999999999999998888875533   3457777667777777


Q ss_pred             hhhhhccCCCh---HHHHHH---HHHhcCC---chhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc-
Q 014893          187 TISVSVFGLPT---PIGAGI---MLVSCVS---GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR-  256 (416)
Q Consensus       187 ~l~~~~~~l~~---~la~Gl---iL~a~~P---g~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~-  256 (416)
                      +    +++.+.   .+..|+   .+++++-   |+.+...+....+-+.   .-.....+    .---|+...+.+|.. 
T Consensus        94 ~----~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D---~gA~~i~s----l~~GPf~TMi~LG~sG  162 (314)
T TIGR00793        94 R----IIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEE---AGAFVLMS----LESGPLMTMVILGTAG  162 (314)
T ss_pred             H----HcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhh---hhhhhhhh----hccCcHHHHHHHhhcc
Confidence            4    444332   121122   2233222   2223333444433322   22222222    223355555555532 


Q ss_pred             -cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhH-HHHHHHHH
Q 014893          257 -LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGL-TILLLIIT  334 (416)
Q Consensus       257 -v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~-~i~~~~i~  334 (416)
                       -++|+..     ++-.++|+++|+.+...-|++.+.+.+-.+.+-- .+.+.++  ...|-+.+++. +. .+++ .++
T Consensus       163 lA~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIp-Ff~FaLG--aginl~~i~~a-Gl~GIlL-Gl~  232 (314)
T TIGR00793       163 IASFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIP-FFAFALG--NTIDLGVIIQT-GLLGILL-GVS  232 (314)
T ss_pred             CCCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeee-hhhhhhc--CCCCHHHHHHh-CcchHHH-HHH
Confidence             4577654     3457899999999999999888887776543211 1111111  12333344442 22 2222 223


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHH
Q 014893          335 FHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLV  408 (416)
Q Consensus       335 ~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~--~f~~p~~alp---~~iy~v~q~i~~~~la  408 (416)
                      ..++.....|+.-|.+.+.+     .....+.++..-|. +.-.++|..  .|. |.+...   ++...++..+...++.
T Consensus       233 v~~vtG~~~~~~dr~~~g~~-----g~aG~A~sstAGnAvatPaavA~adPs~~-~~a~~ATaqvAaavivTaiL~Pilt  306 (314)
T TIGR00793       233 VIILTGIPLILADKFIGGGD-----GTAGIAASSSAGAAVATPVLIAEMVPAFK-PVAPAATALVATSVIVTSLLVPIAT  306 (314)
T ss_pred             HHHHHhHHHHHHHHHhcCCC-----CchhhHHHHHHHHhhhhHHHHHHhChhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455566666442222     22234444444443 222333332  221 211111   2334567788889999


Q ss_pred             HHHhhccC
Q 014893          409 MLWAKKSE  416 (416)
Q Consensus       409 ~~w~~r~~  416 (416)
                      .||.||-|
T Consensus       307 a~~~kr~~  314 (314)
T TIGR00793       307 VWWSKKVK  314 (314)
T ss_pred             HHHHHhcC
Confidence            99998864

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=97.65  E-value=0.0032  Score=63.54  Aligned_cols=273  Identities=17%  Similarity=0.268  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHhhcCcchh--hhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHH
Q 014893          112 PHVVLGSTMLALVFPPSFT--WFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF  185 (416)
Q Consensus       112 ~l~v~~~~~~g~~~P~~~~--~l~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l  185 (416)
                      ..-++++..+.-++|+...  .+.    +.-..+.+++-+|++|.++++|+....++|-..+   ++..+++-=++++..
T Consensus        18 ~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~~   94 (326)
T PRK05274         18 LVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVIA   94 (326)
T ss_pred             eHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHHh
Confidence            3445677788888998421  111    1234578999999999999999998888775543   234555555556666


Q ss_pred             HhhhhhccCCCh---HHHHHHHHHhc------CCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC-
Q 014893          186 GTISVSVFGLPT---PIGAGIMLVSC------VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK-  255 (416)
Q Consensus       186 ~~l~~~~~~l~~---~la~GliL~a~------~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~-  255 (416)
                      ++    +++.+.   +...|+.....      +=++.+...++...+... .-+...+.+  =    .-|....++++. 
T Consensus        95 ~~----~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d-~ga~i~lsl--~----~Gp~~tM~lL~aa  163 (326)
T PRK05274         95 GK----FIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKED-AGAFVLMSL--E----DGPFMTMLALGAA  163 (326)
T ss_pred             hh----cchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCC-cchHHHHHH--h----hhHHHHHHHHHhh
Confidence            63    343211   22223222221      122333334555544322 122222222  2    224333333332 


Q ss_pred             -ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhh--hhhhchhhHHHHHHH
Q 014893          256 -RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLI  332 (416)
Q Consensus       256 -~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~--~~i~~~~~~~i~~~~  332 (416)
                       .-.++..++...     ++|+++|+.++.+.+++.+...+-.+.+--..     ....+.++  +.+.. .++.-.+..
T Consensus       164 gla~~p~~~li~a-----llplliG~~lgnl~~~l~~~~~~Gi~~lLp~~-----~~~lG~~l~lq~i~~-~G~~GilL~  232 (326)
T PRK05274        164 GLASFPPPALVGA-----VLPLLVGFILGNLDPELRQFLGKAVPVLIPFF-----AFALGNGIDLGTIIT-AGLSGILLG  232 (326)
T ss_pred             CcccCCCchhhHH-----HHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHH-----HHHHhcceeHhHHHh-cCCcchhhh
Confidence             224555544222     29999999999988877777776654411111     11123222  23322 233223444


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHH-HHHHH--hCCC--CcchhHHHHHHHHHHHHHHHH
Q 014893          333 ITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLAL-ALANR--FFQD--PLVSVPPAISTVIMSLMGFFL  407 (416)
Q Consensus       333 i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal-~lA~~--~f~~--p~~alp~~iy~v~q~i~~~~l  407 (416)
                      +..++.....+|+..| +++.+    ++....+..++..|..-+- +++..  .+..  +.+.+-++.-.++..+...++
T Consensus       233 ~~~~~~t~~~~~~~~R-l~~~~----~g~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l  307 (326)
T PRK05274        233 VAVVAVTGIPLYLADR-LIGGG----NGVAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPIL  307 (326)
T ss_pred             hhHhhccchhhHhHhh-eeecC----CCcchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHH
Confidence            4556666777888886 44433    2334455555555653222 23221  2221  222333333345666777777


Q ss_pred             HHHHhhc
Q 014893          408 VMLWAKK  414 (416)
Q Consensus       408 a~~w~~r  414 (416)
                      ..||.||
T Consensus       308 ~~~~~k~  314 (326)
T PRK05274        308 TAWWSKR  314 (326)
T ss_pred             HHHHHHH
Confidence            7777665

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.54  E-value=0.12  Score=51.99  Aligned_cols=259  Identities=15%  Similarity=0.166  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-  216 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-  216 (416)
                      .....++=..+|..++.+.+.+...++...+...+...+..-+.+|.+.    +..+.|..-    .+.++.||+.+.- 
T Consensus        28 ~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~T----A~~~~~PGg~s~m~   99 (318)
T PF05145_consen   28 NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRAT----AFFASMPGGLSEMV   99 (318)
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhH----HHHHcCCccHHHHH
Confidence            3445555566899999999998888888777777777777767777776    355665433    2478999998775 


Q ss_pred             HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC----ccccChH---HHHHHHHHHHHHHHHHHHHHHHH-hHH
Q 014893          217 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDVK---GMVSSILQIVVVPIAAGLLLNRF-FPR  288 (416)
Q Consensus       217 v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~----~v~vd~~---~i~~~Ll~~vllPl~lG~llr~~-~p~  288 (416)
                      ++++-.|+|. ..-.....+=.++-++++|+...++.+.    ..+.+..   .-...+...+.+-...|.+.|+. +|.
T Consensus       100 ~la~~~gad~-~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~l~~~l~iPa  178 (318)
T PF05145_consen  100 ALAEEYGADT-RRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLWLALLALAALAGGLLARRLRIPA  178 (318)
T ss_pred             HHHHHcCCCh-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5899999999 8988999999999999999999887653    1111100   11223444455555666666665 332


Q ss_pred             --H---------HHHH---cccCChHHHHHHHHHHHHHHHhhh--hhhhc--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          289 --I---------CNAI---RPFLPPLSVLVTACCVGAPLAINI--ESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLA  350 (416)
Q Consensus       289 --~---------~~~i---~~~l~~ls~l~llliv~~~~~~n~--~~i~~--~~~~~i~~~~i~~~l~~f~lG~~l~~~l  350 (416)
                        +         .+..   +...|..-...--++++..++..-  +.+.+  ..........+.+...++..++.+++ +
T Consensus       179 ~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~-~  257 (318)
T PF05145_consen  179 PWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR-L  257 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence              1         1111   222332222222233344444322  22111  11122334455566677888888887 4


Q ss_pred             hccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHH----HHHHHHHHHHHHhhcc
Q 014893          351 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVI----MSLMGFFLVMLWAKKS  415 (416)
Q Consensus       351 ~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~----q~i~~~~la~~w~~r~  415 (416)
                      .+.|.    ...-++++=|--+.-  ..+|...-  .+..+ ++.+|++    -.+....++++|+||+
T Consensus       258 ~~~~~----~t~~La~aPGGl~eM--~l~A~~l~--~d~~~-V~~~q~~Rl~~v~~~~p~~~r~~~r~~  317 (318)
T PF05145_consen  258 TGIDF----LTALLATAPGGLAEM--ALIALALG--ADVAF-VAAHQVVRLLFVLLLAPFIARWLRRRR  317 (318)
T ss_pred             HCCCH----HHHHHHhCCccHHHH--HHHHHHcC--CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44432    333344444422221  22233322  22333 2345553    3455677778888876

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.27  E-value=0.23  Score=50.46  Aligned_cols=100  Identities=16%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             HHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HHHHhcCC
Q 014893          146 FAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDP  224 (416)
Q Consensus       146 f~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~T~la~G  224 (416)
                      ..+|.+++.+++....++|...+..++....+.-+.+|.+.+    ..++|..-+    ..+++||+.+.- .+++-.|.
T Consensus        69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gA  140 (352)
T COG3180          69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSIAQDYGA  140 (352)
T ss_pred             HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHHHHHhCC
Confidence            348999999999988888888888788788788788888875    334555433    378999999885 58999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 014893          225 PLAPLSIVMTSLSTATAVFVTPLLSLLLIG  254 (416)
Q Consensus       225 n~aaLsl~lt~istlla~~~~Pl~l~ll~g  254 (416)
                      |. .+...+..+=-+.-..+.|+....+.|
T Consensus       141 d~-~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         141 DL-RLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             Ch-hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99 899999999999999999999999885

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=97.19  E-value=0.32  Score=55.17  Aligned_cols=108  Identities=18%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHH-HHHHHhhhhhccCCCh-H----HHHHHHHHhcCCc
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPT-P----IGAGIMLVSCVSG  211 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Pll-a~~l~~l~~~~~~l~~-~----la~GliL~a~~Pg  211 (416)
                      ...+.++||..|+++|++.+++..|+  .+.+++. .+ +.|++ +++++..+ .....+. .    +..|+.+... .-
T Consensus       109 ~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~T-s~  182 (832)
T PLN03159        109 NLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVT-AF  182 (832)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHh-hH
Confidence            34678899999999999999855433  2322222 22 33443 44444321 1111111 1    2222222111 11


Q ss_pred             hhhHHHHH--HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893          212 AQLSNYAT--FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  251 (416)
Q Consensus       212 ~~~s~v~T--~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l  251 (416)
                      ...+.+++  ++.+-+...+++..++++-+++.+++-+...+
T Consensus       183 pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        183 PVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             HHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222333  23455655677888888888888777665444

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.77  E-value=0.6  Score=45.42  Aligned_cols=145  Identities=17%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHH--HHHHHhhhhhccCCC--hHHHHHHHHHhcCCchh
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQ  213 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Pll--a~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~  213 (416)
                      ...+.+++|..|+++|.+++++..|+...+   ....+ +.|.+  ++..+    ..++.+  .....|..+...+|+..
T Consensus        48 ~igl~~llF~~Gl~~d~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~lg~~ls~Ts~~v~  119 (273)
T TIGR00932        48 EFGVILLMFLIGLELDLERLWKLRKAAFGV---GVLQV-LVPGVLLGLLLG----HLLGLALGAAVVIGIILALSSTAVV  119 (273)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHhHHHHH
Confidence            456889999999999999998765543322   22222 23422  23233    233433  33444444443333222


Q ss_pred             hHHHHHH--hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014893          214 LSNYATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN  291 (416)
Q Consensus       214 ~s~v~T~--la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~  291 (416)
                      . .++..  +.+.+...+.+....++-+++.+..-+......+..  .+.......+...+..-+..+.+.++..+...+
T Consensus       120 ~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
T TIGR00932       120 V-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLR  196 (273)
T ss_pred             H-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 23332  235555456677777888888888777665543322  222223333333344444556666665555444


Q ss_pred             HH
Q 014893          292 AI  293 (416)
Q Consensus       292 ~i  293 (416)
                      +.
T Consensus       197 ~~  198 (273)
T TIGR00932       197 LT  198 (273)
T ss_pred             HH
Confidence            44

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.27  E-value=0.98  Score=46.90  Aligned_cols=150  Identities=16%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH-HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN  216 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P-lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~  216 (416)
                      ...+.++||..|++.|.+++++..|+.   ..+...--+..| .++...... +..++.++.+..|..+. ....+..+.
T Consensus        63 elGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~-~sS~~i~~~  137 (397)
T COG0475          63 ELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALA-LSSTAIVLK  137 (397)
T ss_pred             HHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHH-HHHHHHHHH
Confidence            346889999999999999998776654   122222223444 333222210 01234444555555533 333444555


Q ss_pred             HHHH--hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014893          217 YATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI  293 (416)
Q Consensus       217 v~T~--la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd-~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i  293 (416)
                      ++.+  ..+.+.....+....+.-+.+..+..+...+..+...+.+ ...+...+.....+=+.+|   |++.|+..++.
T Consensus       138 iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~~~r~~  214 (397)
T COG0475         138 ILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPPLFRRV  214 (397)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            5555  3344433466666777777777777776665544344433 2344444443444333344   44444444444


Q ss_pred             cc
Q 014893          294 RP  295 (416)
Q Consensus       294 ~~  295 (416)
                      ++
T Consensus       215 ~~  216 (397)
T COG0475         215 AK  216 (397)
T ss_pred             Hh
Confidence            43

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.03  E-value=0.6  Score=50.52  Aligned_cols=173  Identities=18%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhhcCcc--hh--hhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHH-HHHHHHHHhHHHHHHHHH
Q 014893          111 LPHVVLGSTMLALVFPPS--FT--WFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI-FAGYVGQFVVKPILGYIF  185 (416)
Q Consensus       111 l~l~v~~~~~~g~~~P~~--~~--~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~l-l~~l~~~fvi~Plla~~l  185 (416)
                      +...+++|+++|-..+..  +.  ...+......+.+++|..|++++.+++++..+..-.+ ..+.+..+++.   ++..
T Consensus        33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~---g~~~  109 (562)
T PRK05326         33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLT---GLFA  109 (562)
T ss_pred             HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            344555666666433221  11  1112334467899999999999999998665443222 22222222221   2222


Q ss_pred             HhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCC------chhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893          186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPP------LAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV  259 (416)
Q Consensus       186 ~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn------~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v  259 (416)
                      .    ..++.+.  ..++++-++...+..+.++.-+-+.+      ...+......++-.++++++=+.+.+..+...+.
T Consensus       110 ~----~l~g~~~--~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~  183 (562)
T PRK05326        110 H----WLLGLDW--LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGL  183 (562)
T ss_pred             H----HHhcCCH--HHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcc
Confidence            2    2344433  33444444433333333333333322      2112222233444556555444444443333222


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014893          260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI  293 (416)
Q Consensus       260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i  293 (416)
                      +. ..+..++..+.+-+++|....+......++.
T Consensus       184 ~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~  216 (562)
T PRK05326        184 SW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI  216 (562)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 2233344455556666666665555544444

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=95.82  E-value=0.64  Score=41.87  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-  216 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-  216 (416)
                      .....++-...|++++.+++++..+.+...+...+...++.=..++.+.    +..+.|..-+    +.+++|||...- 
T Consensus        50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m~  121 (156)
T TIGR03082        50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEMA  121 (156)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHHH
Confidence            3455666677999999999998888777665555555555445555555    4556655332    478999998775 


Q ss_pred             HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893          217 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  251 (416)
Q Consensus       217 v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l  251 (416)
                      ..+.-.|.|. +.-.....+=.++-.+..|+...+
T Consensus       122 ~~A~~~gad~-~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       122 ALAAELGADV-AFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5778889998 788888888777777888887653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.89  E-value=6  Score=43.55  Aligned_cols=97  Identities=15%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hHHHHHHHHHhcCCchhhHH
Q 014893          139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSN  216 (416)
Q Consensus       139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~~s~  216 (416)
                      ..+.++||..|+++|++++++..|+   ++..-..|.++.-+++++++    ..++.+  ..+.+|..+...++ +....
T Consensus        62 lGvv~LlF~iGLEl~~~~l~~~~~~---~~~~g~~qv~~~~~~~~~~~----~~~g~~~~~al~ig~~la~SSt-aiv~~  133 (621)
T PRK03562         62 FGVVLMLFVIGLELDPQRLWKLRRS---IFGGGALQMVACGGLLGLFC----MLLGLRWQVALLIGLGLALSST-AIAMQ  133 (621)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHH-HHHHH
Confidence            4688899999999999999865333   22223345444434444444    234443  34445555443332 33344


Q ss_pred             HHHHhc--CCCchhhHHHHHHHHHHHHHH
Q 014893          217 YATFLT--DPPLAPLSIVMTSLSTATAVF  243 (416)
Q Consensus       217 v~T~la--~Gn~aaLsl~lt~istlla~~  243 (416)
                      ++..+-  +......++....+.-++++.
T Consensus       134 ~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~  162 (621)
T PRK03562        134 AMNERNLMVTQMGRSAFAILLFQDIAAIP  162 (621)
T ss_pred             HHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence            454432  333223445555555554443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.88  E-value=6.5  Score=42.50  Aligned_cols=102  Identities=25%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hHHHHHHHHHhcCCchhhH
Q 014893          138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLS  215 (416)
Q Consensus       138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~~s  215 (416)
                      ...+.++||..|+++|.+++++..   +....+...++++.-++++++++    .++.+  ..+..|..+.. ++.+...
T Consensus        62 ~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~al~lg~~ls~-tS~~vv~  133 (558)
T PRK10669         62 ELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA----VLGWSLMTGIVFGLCLST-ASTVVLL  133 (558)
T ss_pred             HHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHH-HHHHHHH
Confidence            347889999999999999997542   33333445565555455555552    34433  33333433222 1112222


Q ss_pred             HHHHHhc--CCCchhhHHHHHHHHHHHHHHHHHH
Q 014893          216 NYATFLT--DPPLAPLSIVMTSLSTATAVFVTPL  247 (416)
Q Consensus       216 ~v~T~la--~Gn~aaLsl~lt~istlla~~~~Pl  247 (416)
                      ..+..+-  +-+...+++....+.-+++++++-+
T Consensus       134 ~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~  167 (558)
T PRK10669        134 RALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVL  167 (558)
T ss_pred             HHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            2222221  1122235566666666666554443

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=94.73  E-value=5.4  Score=45.04  Aligned_cols=55  Identities=13%  Similarity=0.048  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhhcCcchhhhh----h----hhHHHHHHHHHHHhcCCCCHHHHHHHhhchh
Q 014893          111 LPHVVLGSTMLALVFPPSFTWFT----A----RYYAPALGFLMFAVGVNSSEKDFIEAFKRPA  165 (416)
Q Consensus       111 l~l~v~~~~~~g~~~P~~~~~l~----~----~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~  165 (416)
                      ..+.+++|+++|-..-..+....    +    ...-..+.+.+|..|++++.+.+++.++.+.
T Consensus        41 ~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~  103 (810)
T TIGR00844        41 SMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVT  103 (810)
T ss_pred             HHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence            34566667766654322222110    0    1122578999999999999999986655544

This model is specific for the fungal members of this family.

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=94.66  E-value=0.42  Score=47.78  Aligned_cols=119  Identities=11%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHH--hH-HHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHH
Q 014893          262 KGMVSSILQIVVVPIAAGLLL-NRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL  337 (416)
Q Consensus       262 ~~i~~~Ll~~vllPl~lG~ll-r~~--~p-~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l  337 (416)
                      +.++.++ .-+++-+.+|.++ ||.  ++ +..+.+.+.   +-.+.+=+.++..+........+...+...........
T Consensus         4 ~~~~~~i-lpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~---v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (321)
T TIGR00946         4 YVILETV-LPILVVILLGYILGKRFGILDEEHASGINRF---VINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS   79 (321)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444 3567778899999 665  22 223333332   22233333333334432111001011222233334455


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHHhCCCC
Q 014893          338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP  387 (416)
Q Consensus       338 ~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~~f~~p  387 (416)
                      ..+.++|.++|++++.++   +++.+..+.++.-|. -+|++++...|++.
T Consensus        80 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~  127 (321)
T TIGR00946        80 GSYALIWLITKPLFKADY---GKLSGFLLVSALPNTAFIGYPLLLSLFGEE  127 (321)
T ss_pred             HHHHHHHHHHHHHHhccc---chhhHHHHHhhhccceeehHHHHHHHhccc
Confidence            667888888875555554   677888888898896 56899999989743

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.42  E-value=6.2  Score=39.63  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHh-hc--CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893          111 LPHVVLGSTMLAL-VF--PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT  187 (416)
Q Consensus       111 l~l~v~~~~~~g~-~~--P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~  187 (416)
                      +.+.+++|++++- .+  |+..+.-.+......+-.-.-.+|.++++.|+.+.-.+  .++.... .....=++++.++.
T Consensus        29 ~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~--~~~~~~~-~v~~~~~~~~~lg~  105 (305)
T PF03601_consen   29 LLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWK--GLLIIII-VVILTFLLTYWLGR  105 (305)
T ss_pred             HHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCcc--HHHHHHH-HHHHHHHHHHHHHH
Confidence            4677777888774 22  22222211111124555555568999999999865333  2332222 22223344555652


Q ss_pred             hhhhccCCChHHHHHHHHHhcCCchhhHHH----HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       188 l~~~~~~l~~~la~GliL~a~~Pg~~~s~v----~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll  252 (416)
                         ..+++|++.+ -++-++.+=||.++..    ..+--+-|. ++++..+.+-..++++..|.+-..+
T Consensus       106 ---r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~-a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  106 ---RLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDV-AYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             ---HHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCce-eeeehHHHHHHHHHHHHHHHHHHHh
Confidence               4678888754 4444666666665543    223345566 7999999999999999999998865

; GO: 0016021 integral to membrane

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=93.54  E-value=13  Score=40.14  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhcCcchhhhhh-hhHHHHHHHHHHHhcCCCCHHHHHHHhhc
Q 014893          112 PHVVLGSTMLALVFPPSFTWFTA-RYYAPALGFLMFAVGVNSSEKDFIEAFKR  163 (416)
Q Consensus       112 ~l~v~~~~~~g~~~P~~~~~l~~-~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~  163 (416)
                      ...+++|+++|...-.......+ ......+..++|..|++++.+++++..+.
T Consensus        26 v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~   78 (525)
T TIGR00831        26 IALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP   78 (525)
T ss_pred             HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34455677777431110001111 12235788999999999999999865443

This model is specific for the bacterial members of this family.

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=93.46  E-value=1.2  Score=45.37  Aligned_cols=107  Identities=14%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHH--hH-HHHHHHcccCChHHHHHHHHHHHHHHHhhh--hhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014893          271 IVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLIITFHLSAFVAGYV  345 (416)
Q Consensus       271 ~vllPl~lG~llr~~--~p-~~~~~i~~~l~~ls~l~llliv~~~~~~n~--~~i~~~~~~~i~~~~i~~~l~~f~lG~~  345 (416)
                      -+++-+++|.+.+++  ++ +..+.+.+.   .-.+++=+.++..++.+.  +.+.+ + +.+.+...+..++++.+++.
T Consensus         8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~l---v~~~~lP~liF~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~   82 (385)
T PF03547_consen    8 PIFLIILLGYLLGRFGILDPEASKGLSKL---VFNVFLPALIFSSIANTDTLEDLLS-L-WFIPVFAFIIFILGLLLGFL   82 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhhh-h-HHHHHHHHHHHHHHHHHHHH
Confidence            456667788888876  22 222223322   223333334444444321  11211 1 23344455667777888888


Q ss_pred             HHHHhhccccccchhhhheeeecccccH-HHHHHHHHHhCCC
Q 014893          346 VTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD  386 (416)
Q Consensus       346 l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~~f~~  386 (416)
                      +.| +++.++   +++.....+++..|. .+++++....+++
T Consensus        83 ~~~-~~~~~~---~~~~~~~~~~~~~N~~~lglpi~~~l~g~  120 (385)
T PF03547_consen   83 LSR-LFRLPK---EWRGVFVLAASFGNTGFLGLPILQALFGE  120 (385)
T ss_pred             HHH-hcCCCc---ccceEEEecccCCcchhhHHHHHHHHhcc
Confidence            876 455554   677778888888997 7789999998974

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=93.28  E-value=0.81  Score=43.63  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=72.3

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  233 (416)
Q Consensus       154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l  233 (416)
                      .|+.....||++.++.++...-++--+..+.++    ..+++++++..++.-=+  =+++.+.-.++..|||. +++.+.
T Consensus        67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~-sLta~~  139 (215)
T PF04172_consen   67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIP-SLTAVF  139 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence            456666678888898888887777777777777    57899999886664211  13334445899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 014893          234 TSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       234 t~istlla~~~~Pl~l~ll  252 (416)
                      +.++-+++..+-|.++.++
T Consensus       140 VvitGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen  140 VVITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHHHhhHHHHhHHHHHhHc
Confidence            9999999999999999986

>PRK10711 hypothetical protein; Provisional

Probab=92.93  E-value=1.1  Score=43.08  Aligned_cols=92  Identities=14%  Similarity=-0.006  Sum_probs=72.3

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  233 (416)
Q Consensus       154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l  233 (416)
                      .++.+...||++.++.++..--++--+.++.++    ..+++++++..++.==+  =+++.+--.++..||+. +++.+.
T Consensus        78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl~pkS--VTtPIAm~is~~iGG~~-sLta~~  150 (231)
T PRK10711         78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASILPKS--VTTPIAMAVGGSIGGIP-AISAVC  150 (231)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhhh--hhHHHHHHHHHHhCCcH-HHHHHH
Confidence            355666667888899988888777778888888    57899999886654111  13333344799999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 014893          234 TSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       234 t~istlla~~~~Pl~l~ll  252 (416)
                      +.++-+++.++-|.++.++
T Consensus       151 ViitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        151 VIFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999987

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=92.84  E-value=5.4  Score=40.21  Aligned_cols=105  Identities=8%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HH
Q 014893          140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YA  218 (416)
Q Consensus       140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~  218 (416)
                      +-.++=...|++.+.+++++..|.....+...+....+.=++++.+.    .+.++|.    .-.+++++|||...- ..
T Consensus       209 aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~----~t~~La~aPGGl~eM~l~  280 (318)
T PF05145_consen  209 AQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDF----LTALLATAPGGLAEMALI  280 (318)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCH----HHHHHHhCCccHHHHHHH
Confidence            44455557899999999988766655554444444455545566665    3555544    344689999999775 57


Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893          219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (416)
Q Consensus       219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~  253 (416)
                      +.-.|.|. +.-.....+=.+.-.+..|.+..++.
T Consensus       281 A~~l~~d~-~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  281 ALALGADV-AFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999 88888888888888888888887764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=92.72  E-value=1.2  Score=42.89  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  233 (416)
Q Consensus       154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l  233 (416)
                      .++.+...||++.++.++..--++--..++.++    ..+++++++..++.-=+  =+++.+--.++..|||. +++.+.
T Consensus        77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~-sLta~~  149 (226)
T TIGR00659        77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIP-AVTAVF  149 (226)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence            566666677888888888877666667777887    57899998876553111  13334445899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 014893          234 TSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       234 t~istlla~~~~Pl~l~ll  252 (416)
                      +.++-+++..+-|.++.++
T Consensus       150 vvitGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       150 VILTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999987

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=92.54  E-value=1.3  Score=42.64  Aligned_cols=89  Identities=12%  Similarity=0.022  Sum_probs=71.8

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCch---hhHHHHHHhcCCCchhhH
Q 014893          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA---QLSNYATFLTDPPLAPLS  230 (416)
Q Consensus       154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~---~~s~v~T~la~Gn~aaLs  230 (416)
                      .++.+...|+++.++.++++--++--+.++.++    ..+++++++..+++     |=.   +.+--.++..||+. +++
T Consensus        83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl~-----pKSVTtPIAm~is~~iGG~p-sLt  152 (232)
T PRK04288         83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASML-----PQAATTAIALPVSAGIGGIK-EIT  152 (232)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHh-----hHhhhHHHHHHHHHHhCCcH-HHH
Confidence            355555667888899888887777777788888    57899998876553     533   34445899999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 014893          231 IVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       231 l~lt~istlla~~~~Pl~l~ll  252 (416)
                      .+.+.++-+++.++-|.++.++
T Consensus       153 A~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        153 SFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999987

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=92.00  E-value=2.1  Score=43.05  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhcc
Q 014893          114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF  193 (416)
Q Consensus       114 ~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~  193 (416)
                      .+++++++|-+.+..-+.++ +-+...+.+..|.+|.+++++|+.+.  -+..++.+++.-.+ .=++.+.+.+    .+
T Consensus       172 pILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~vv~~-t~~~~~~i~r----ll  243 (312)
T PRK12460        172 PLVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVLVTIV-TGFFNIFADR----LV  243 (312)
T ss_pred             HHHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHHHHHH-HHHHHHHHHH----Hh
Confidence            33344444444433222332 34455788888999999999999754  24445555544333 2355666665    44


Q ss_pred             CCChHHHHHHHH-HhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893          194 GLPTPIGAGIML-VSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (416)
Q Consensus       194 ~l~~~la~GliL-~a~~Pg~~~s~v-~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~  253 (416)
                      +.+......+-- .+.+=|+.++.. ..-..+.-. +.+.+....+.++..++.|++..++.
T Consensus       244 g~~~~~g~li~stAGnAIcgpAAVaAadP~~~~~~-~~Ataqvaa~vivTail~P~~t~~~~  304 (312)
T PRK12460        244 GGTGIAGAAASSTAGNAVATPLAIAAADPSLAPVA-AAATAQVAASVIVTAILTPLLTSWVA  304 (312)
T ss_pred             CCChhHHHHHHHHhhHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766655322210 111112222211 111112222 56666666677777777777776653

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=91.86  E-value=1.5  Score=44.02  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHcccCChH----HHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 014893          271 IVVVPIAAGLLLNRFFPRICNAIRPFLPPL----SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV  346 (416)
Q Consensus       271 ~vllPl~lG~llr~~~p~~~~~i~~~l~~l----s~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l  346 (416)
                      ..++.+++|++++.+..+..++.++-.+..    -.+++++.   -+..+-+.+.+ .++...+..++.....+.+++++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l  103 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL  103 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence            456778899999973322223333333222    22333322   12222233433 45544555666777788999999


Q ss_pred             HHHhhccccccchhhhheeeecccccHHHHHHHHHH
Q 014893          347 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANR  382 (416)
Q Consensus       347 ~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~  382 (416)
                      ++++++.++   +...-++-.++.-=.+-.++++-.
T Consensus       104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a~~  136 (305)
T PF03601_consen  104 GRRLFGLDR---KLAILIAAGTSICGASAIAATAPV  136 (305)
T ss_pred             HHHHhCCCH---HHHHHHHhhcccchHHHHHHHccc
Confidence            955778864   455555555555555544455443

; GO: 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.56  E-value=17  Score=36.89  Aligned_cols=132  Identities=15%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhhcCcchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893          111 LPHVVLGSTMLALVFPPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT  187 (416)
Q Consensus       111 l~l~v~~~~~~g~~~P~~~~~l~---~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~  187 (416)
                      +.+.+++|+++|. +++..+...   +-.-...+-+-.-..|.++++.|+.+.=.+--.+.   .......=++++.++ 
T Consensus        40 l~lAIllGi~l~~-l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~---~~~l~~t~~~~~~lg-  114 (334)
T COG2855          40 LTLAILLGILLGI-LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLII---AITLSSTFLFAYFLG-  114 (334)
T ss_pred             HHHHHHHHHHHhc-cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHH---HHHHHHHHHHHHHHH-
Confidence            5677888888883 333332221   11122355444455789999999986644332222   222233335577777 


Q ss_pred             hhhhccCCChHHHHHHHHHhcCCchhhHHH----HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       188 l~~~~~~l~~~la~GliL~a~~Pg~~~s~v----~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll  252 (416)
                         ..+++|...+ -++=++++=||.++..    .+.--+-|+ +.++..+.+-..++.+..|.+-.++
T Consensus       115 ---~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev-a~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         115 ---KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV-AVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             ---HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-ceehhhHHHHHHHHHHHHHHHHHHh
Confidence               4678888765 4445666667776654    233344566 7889999999999999999988865

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.35  E-value=26  Score=38.46  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCCh--HHHHHHHHHhcCCchhhHH
Q 014893          139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT--PIGAGIMLVSCVSGAQLSN  216 (416)
Q Consensus       139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~--~la~GliL~a~~Pg~~~s~  216 (416)
                      ..+.++||..|+++|++++++..|+   .+..-..|.++.-++++++.    ..++.+.  .+.+|+.+ +.++++....
T Consensus        62 lGvv~LLF~iGLel~~~~l~~~~~~---~~~~g~~~v~~t~~~~~~~~----~~~g~~~~~a~~~g~~l-a~SSTaiv~~  133 (601)
T PRK03659         62 LGVVFLMFIIGLELNPSKLWQLRRS---IFGVGAAQVLLSAAVLAGLL----MLTDFSWQAAVVGGIGL-AMSSTAMALQ  133 (601)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHccCHHHHHHHHHHH-HHHHHHHHHH
Confidence            4788999999999999999765332   22222334444333333333    2334443  34445433 2233333344


Q ss_pred             HHHHhcCCCc--hhhHHHHHHHHHHHHH
Q 014893          217 YATFLTDPPL--APLSIVMTSLSTATAV  242 (416)
Q Consensus       217 v~T~la~Gn~--aaLsl~lt~istlla~  242 (416)
                      ++...-.-+.  ..+++....+.-+.++
T Consensus       134 iL~e~~~~~t~~G~~~l~vll~~Di~~i  161 (601)
T PRK03659        134 LMREKGMNRSESGQLGFSVLLFQDLAVI  161 (601)
T ss_pred             HHHHcccccCchHHHHHHHHHHHHHHHH
Confidence            5554432222  1234444444544433

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=90.85  E-value=13  Score=34.70  Aligned_cols=123  Identities=23%  Similarity=0.341  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHh-hchhHHHHHHHHHHhHHHHH-HHHHHhhh
Q 014893          114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK--DFIEAF-KRPAAIFAGYVGQFVVKPIL-GYIFGTIS  189 (416)
Q Consensus       114 ~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~--~l~~~~-~~p~~ll~~l~~~fvi~Pll-a~~l~~l~  189 (416)
                      .+++|.++|+......... +....+.+.+++|.+|+++.-+  .+++.. -+++.+++.+..  ++-.++ ++..+   
T Consensus         4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~---   77 (191)
T PF03956_consen    4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLAS---   77 (191)
T ss_pred             eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHH---
Confidence            4678889999887664333 3567789999999999988665  333333 234444433332  222233 33333   


Q ss_pred             hhccCCChHHHHHHHHHhcCCchh---hHH-HHHHhcCCCchhhHHHHHHHHH----HHHHHHHHHHHHHh
Q 014893          190 VSVFGLPTPIGAGIMLVSCVSGAQ---LSN-YATFLTDPPLAPLSIVMTSLST----ATAVFVTPLLSLLL  252 (416)
Q Consensus       190 ~~~~~l~~~la~GliL~a~~Pg~~---~s~-v~T~la~Gn~aaLsl~lt~ist----lla~~~~Pl~l~ll  252 (416)
                       .+++.+....  +.   .+.|-.   .|. ..|.+.+-..    -++..++|    +++.+.+|++...+
T Consensus        78 -~ll~~~~~~~--la---v~sG~GwYSlsg~~i~~~~~~~~----G~iafl~n~~RE~~a~~~~P~~~r~~  138 (191)
T PF03956_consen   78 -LLLGLSLKES--LA---VASGFGWYSLSGVLITQLYGPEL----GTIAFLSNLFREILAIILIPLLARYF  138 (191)
T ss_pred             -HHhcCCHHHH--HH---HHccCcHHHhHHHHHHhhhCHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             3445554332  22   122333   222 3555544322    23333343    57999999999843

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=88.61  E-value=4.9  Score=38.59  Aligned_cols=89  Identities=21%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH---HHHHhcCCCchhhH
Q 014893          154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLS  230 (416)
Q Consensus       154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~---v~T~la~Gn~aaLs  230 (416)
                      .|+.....|||+.++.+.+.--++-=..+++++    +.+++++++...+     .|=....+   -.++..||-. +++
T Consensus        80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~~Sl-----~PkSvTTpiAm~vs~~iGGip-~lt  149 (230)
T COG1346          80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELILSL-----LPKSVTTPIAMEVSESIGGIP-ALT  149 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHh-----cccccccHHHHHHHHhcCCch-HHH
Confidence            467777778899998888876666656677777    5789999887544     46444443   3799999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 014893          231 IVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       231 l~lt~istlla~~~~Pl~l~ll  252 (416)
                      ...+.++-+++-++-|.++..+
T Consensus       150 av~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         150 AVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=87.98  E-value=37  Score=35.43  Aligned_cols=184  Identities=18%  Similarity=0.313  Sum_probs=90.6

Q ss_pred             hhhchHHHHHHHhhhH-HHHHHHHHHHHH---hhcCcchhh---hhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHH
Q 014893           95 NQEFSLVNILKQSNSF-LPHVVLGSTMLA---LVFPPSFTW---FTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI  167 (416)
Q Consensus        95 ~~~~~~~~~l~~l~~~-l~l~v~~~~~~g---~~~P~~~~~---l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~l  167 (416)
                      --+.-.++.++.++|+ +|--++.|.+.+   ...|+.+..   +...+-.+++.+.+-+.|++-+.+++++.- +|-.+
T Consensus        17 llG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg-~~l~~   95 (398)
T TIGR00210        17 LLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGG-KPLLI   95 (398)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhCh-HHHHH
Confidence            4556677888888888 777777765531   222443321   111222234333444788888888876432 22222


Q ss_pred             HHHHHH-HHhHHHHHHHHHHhhhhhccCCChHHHHHHHH--HhcCCchhhH----HHHHHhcC--CCchhhHHHHHHHHH
Q 014893          168 FAGYVG-QFVVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVSGAQLS----NYATFLTD--PPLAPLSIVMTSLST  238 (416)
Q Consensus       168 l~~l~~-~fvi~Plla~~l~~l~~~~~~l~~~la~GliL--~a~~Pg~~~s----~v~T~la~--Gn~aaLsl~lt~ist  238 (416)
                      ...+.. -.+..=.++.+++    ..++++|.+  |++.  ++..-|-..+    +.+.+..|  +-. .++++..++..
T Consensus        96 ~~~~~~~l~~~Qn~vGv~la----~~~gl~P~~--Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~-~lgla~AT~GL  168 (398)
T TIGR00210        96 FLATAVGFLVIQNAVGIGMA----SLLGQAPLM--GLLAGSITLSGGHGTGAAWSPVFYDNYGFRNAT-EIAIACATFGL  168 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHcCCChHH--HHHhhCccCCCCCcHHHHHHHHHHHHcCchhHH-HHHHHHHHHHH
Confidence            222210 1112223344454    467888854  5553  3333333333    34433222  222 45555556666


Q ss_pred             HHHHHH-HHHHHHHhhCCcc----------------------ccChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014893          239 ATAVFV-TPLLSLLLIGKRL----------------------PVDVKGMVSSILQIVVVPIAAGLLLNRFFP  287 (416)
Q Consensus       239 lla~~~-~Pl~l~ll~g~~v----------------------~vd~~~i~~~Ll~~vllPl~lG~llr~~~p  287 (416)
                      +.+.+. .|+.=.+.-..+.                      ..+..+++.++ ..+.+-+.+|..+..+..
T Consensus       169 v~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~  239 (398)
T TIGR00210       169 VFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA  239 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            666554 4555443211000                      02233445554 467777778887777654

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=87.93  E-value=8  Score=35.48  Aligned_cols=55  Identities=25%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHh
Q 014893          324 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRF  383 (416)
Q Consensus       324 ~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~  383 (416)
                      .++...+..++.+..+..+++.++|.+++.++     ..+...-+|.++.+-++.-|...
T Consensus        82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   82 GGLKLLLLGVIITLVPLLIALVIGRYLFKLNP-----GIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHccccCcHHHHHHHHh
Confidence            36677788888999999999999986777752     34444455555555555555544

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=87.54  E-value=36  Score=34.74  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             HHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcC
Q 014893          144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD  223 (416)
Q Consensus       144 mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~  223 (416)
                      ++++.|.   .-|+...+.|||..+.|...|+.+.  .++..+    ..++.++..+.++-+++.+=|.++-.+-++++ 
T Consensus        75 IF~GIGA---mtDFgpllanP~~~llGaaAQ~Gif--~t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-  144 (360)
T PF03977_consen   75 IFMGIGA---MTDFGPLLANPKTLLLGAAAQFGIF--ATFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-  144 (360)
T ss_pred             HHHHHhH---HHhhHHHHhCHHHHHHHHHHHHhHH--HHHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-
Confidence            4446666   4456667899999999999999875  333444    34577888888888888876655444445544 


Q ss_pred             CCchhhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 014893          224 PPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (416)
Q Consensus       224 Gn~aaLsl~lt~is-tlla~~~~Pl~l~ll~g  254 (416)
                      .|. --.++..+=| .-+.++.-|-.++++.-
T Consensus       145 p~L-lgpIaVaAYsYMaLvPiiqPpimklLtt  175 (360)
T PF03977_consen  145 PHL-LGPIAVAAYSYMALVPIIQPPIMKLLTT  175 (360)
T ss_pred             HHH-HHHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence            344 2334444444 45667778888888753

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=85.04  E-value=52  Score=34.26  Aligned_cols=191  Identities=17%  Similarity=0.276  Sum_probs=99.8

Q ss_pred             hhhhhhhhhchHHHHHHHhhhH-HHHHHHHHHHHHhhcCcchhhhh-----hhhHHHHHHHHHH-HhcCCCCHHHHHHHh
Q 014893           89 ESNQVLNQEFSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT-----ARYYAPALGFLMF-AVGVNSSEKDFIEAF  161 (416)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~l~~~-l~l~v~~~~~~g~~~P~~~~~l~-----~~~i~~~l~~mmf-~~Gl~l~~~~l~~~~  161 (416)
                      ++.-++--++-++|.++.++|+ .|--++.+.+.+++.|-......     +..+.-.+.+++| .+|++-+++.+++.-
T Consensus        13 ~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgG   92 (404)
T COG0786          13 LAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGG   92 (404)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcC
Confidence            3444556778889999999988 77777777777666665432110     1112223344444 799999999998664


Q ss_pred             hchhHHHHHHHHHH-hHHHHHHHHHHhhhhhccCCChHHHHHHHH--HhcCCch----hhHHHHHHhcCCCch-hhHHHH
Q 014893          162 KRPAAIFAGYVGQF-VVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVSGA----QLSNYATFLTDPPLA-PLSIVM  233 (416)
Q Consensus       162 ~~p~~ll~~l~~~f-vi~Plla~~l~~l~~~~~~l~~~la~GliL--~a~~Pg~----~~s~v~T~la~Gn~a-aLsl~l  233 (416)
                      |.-.. ......-+ ++-=.++.+++    .+.+++|.+  |++.  ++..-|-    .+++.+.++ |-+.| .++++.
T Consensus        93 k~l~i-f~~~a~~l~~~Qn~igi~la----~~lgidpl~--gllagsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~  164 (404)
T COG0786          93 KKLAI-FLATAAGLAVLQNFIGIGLA----KLLGLDPLI--GLLAGSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMAS  164 (404)
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHH----HHcCccHHH--HHHhcceeecCCCchHHHHHHHHHhc-CCcchHHHHHHH
Confidence            44221 11111111 11112233444    456776654  5553  2222222    244556665 33330 233344


Q ss_pred             HHHHHHHHHHH-HHHHHHHhhC---------C---------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014893          234 TSLSTATAVFV-TPLLSLLLIG---------K---------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR  288 (416)
Q Consensus       234 t~istlla~~~-~Pl~l~ll~g---------~---------------~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~  288 (416)
                      .+...+.+.+. .|+-=++.-.         +               .-.++...+..++ .++.+.+.+|..+..+.++
T Consensus       165 ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~i~i~~~vG~~i~~~l~~  243 (404)
T COG0786         165 ATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETL-AIIAICLAVGKIINQLLKS  243 (404)
T ss_pred             HHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            44444544442 3655444310         0               0124444555554 4788888888888877653

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=83.63  E-value=58  Score=33.66  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             HHHHhcCCCCHHHHHHHhhchhHHHH-HHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhc
Q 014893          144 LMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT  222 (416)
Q Consensus       144 mmf~~Gl~l~~~~l~~~~~~p~~ll~-~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la  222 (416)
                      ++++.|.=   -|+...+.|||..+. |...|+.+.=  ++..+    ..++.+...+.++-+++.+=|.++-.+-++++
T Consensus       111 IFlGIGAM---tDFgpllanP~~~ll~gaaAQ~GiF~--t~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLA  181 (399)
T TIGR03136       111 LFFGIGAM---SDISFILARPWASITVALFAEMGTFA--TLVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLILA  181 (399)
T ss_pred             HHHhccHH---hcchHHHhChHHHHHHHHHHHhhHHH--HHHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhhh
Confidence            44466764   455666799999988 8999998653  33333    34567777777777788776655444445554


Q ss_pred             CCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 014893          223 DPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  254 (416)
Q Consensus       223 ~Gn~aaLsl~lt~is-tlla~~~~Pl~l~ll~g  254 (416)
                       -|. --+++..+=| .-+.++.-|-.++++.-
T Consensus       182 -p~L-lg~IaVAAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       182 -KDL-FVPISIIAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             -hHh-HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence             333 2344444444 34566777888887753

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=82.91  E-value=58  Score=33.18  Aligned_cols=135  Identities=11%  Similarity=0.017  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhhc-Ccchhhhhh--hh-HHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHH
Q 014893          111 LPHVVLGSTMLALVF-PPSFTWFTA--RY-YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG  186 (416)
Q Consensus       111 l~l~v~~~~~~g~~~-P~~~~~l~~--~~-i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~  186 (416)
                      +.+.+++|+++|-.+ |+.-+..++  .+ ....+-+-.-.+|.+++++|+.+.=.+  .+...+..-.... ++++.++
T Consensus        34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~--~l~~~~~~v~~~~-~~~~~~g  110 (335)
T TIGR00698        34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPN--EIVADTLILTSTF-FLTVFLG  110 (335)
T ss_pred             HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHH--HHHHHHHHHHHHH-HHHHHHH
Confidence            345666676666533 222222210  11 123455555568999999999765332  2222222222222 2234444


Q ss_pred             hhhhhccCCChHHHHHHHHHhcCCchhhHHH-H---HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893          187 TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A---TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  253 (416)
Q Consensus       187 ~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~---T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~  253 (416)
                      +   +.+++|++.+ -++=.+.+=||.++.. .   .+--+-|. ++++..+.+-..+++++.|.+-.++.
T Consensus       111 ~---k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~-a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       111 S---SRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKV-SVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             H---HHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccce-eeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            1   3578877754 3333444445554433 2   22334456 79999999999999999999987663

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=82.29  E-value=62  Score=33.24  Aligned_cols=104  Identities=12%  Similarity=0.118  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHH-H
Q 014893          140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A  218 (416)
Q Consensus       140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~  218 (416)
                      .-.++.-..|++++-..+++..|--...++..+....+.=..++++.    ...++|...    .+++.+|||...-. .
T Consensus       242 a~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~----~~~~i~~~t----a~La~sPGGl~~ma~~  313 (352)
T COG3180         242 AQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLS----WLTGIDLNT----AYLATSPGGLDTMAAI  313 (352)
T ss_pred             HHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHcCCCcHHHHHHH
Confidence            33445556899999999887766555566656666666666677776    456665532    35899999998764 6


Q ss_pred             HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893          219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  252 (416)
Q Consensus       219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll  252 (416)
                      +...+-|. +.-.++..+=.+.-.++.|.+.+.+
T Consensus       314 A~~l~ad~-a~V~a~q~lRll~il~i~p~l~r~l  346 (352)
T COG3180         314 AAALGADP-AFVMALQVLRLLFILLLGPALARFL  346 (352)
T ss_pred             HHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666798 8888888888887777778877765

>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional

Probab=81.79  E-value=48  Score=31.40  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChH
Q 014893          229 LSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL  300 (416)
Q Consensus       229 Lsl~lt~istlla~~~~Pl~l~ll~g--------~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~l  300 (416)
                      ..++.+.+-++.+++.-++.-.++..        .+.++++..+...++.+-.+=.+.-+.+|++.|++.+....+++.+
T Consensus        41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI  120 (202)
T PRK02830         41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI  120 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            45555555566666665655544322        1244455555555544445556678889999999999999998876


Q ss_pred             HHHHHHH
Q 014893          301 SVLVTAC  307 (416)
Q Consensus       301 s~l~lll  307 (416)
                      ..=|.++
T Consensus       121 ~~NCaVL  127 (202)
T PRK02830        121 TVNCAIF  127 (202)
T ss_pred             HHHHHHH
Confidence            5444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		5e-23
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		1e-22

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 19/252 (7%)
Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F W    Y    LG +MF +G+     DF   FK P  +  G + QF + P   ++ 
Sbjct: 30  PDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLL 88
Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
             +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST  +  +T
Sbjct: 89  SKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLISPLLT 143
Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS---- 301
           P + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S    
Sbjct: 144 PAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAI 203
Query: 302 VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL+    VGA     +ES +  F          + L  F A +  TGL +         Q
Sbjct: 204 VLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA-------Q 254
Query: 362 RTLSYETGMQSS 373
           +TL+ E GMQ+S
Sbjct: 255 KTLTIEVGMQNS 266

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 19/252 (7%)
Query: 126 PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185
           P +F W    Y    LG +MF +G+     DF   FK P  +  G + QF + P   +  
Sbjct: 35  PDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCL 93
Query: 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245
             +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST T+  +T
Sbjct: 94  SKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLT 148
Query: 246 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS---- 301
           P + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S    
Sbjct: 149 PAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAI 208
Query: 302 VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQ 361
           VL+    VGA     +ES +  F          + L  F A +  TGL +         Q
Sbjct: 209 VLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA-------Q 259
Query: 362 RTLSYETGMQSS 373
           + L+ E GMQ+S
Sbjct: 260 KALTIEVGMQNS 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	1e-82
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  255 bits (654), Expect = 1e-82
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 12/318 (3%)

Query: 100 LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIE 159
           L  I                  A   P +F W    Y    LG +MF +G+     DF  
Sbjct: 9   LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDI 67

Query: 160 AFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 219
            FK P  +  G + QF + P   +        +  LP  I  G++LV C  G   SN  T
Sbjct: 68  LFKHPKVVIIGVIAQFAIMPATAWCL----SKLLNLPAEIAVGVILVGCCPGGTASNVMT 123

Query: 220 FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAG 279
           +L    +A LS+ +TS+ST T+  +TP + L+L G+ L +   GM+ SI+++V++PI  G
Sbjct: 124 YLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLG 182

Query: 280 LLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA 339
           L++++        +   LP +SV      +GA +  +   +M   GL I  +++  +   
Sbjct: 183 LIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME-SGLLIFAVVVLHNGIG 241

Query: 340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFF-QDPLVSVPPAISTV 398
           ++ G+                Q+ L+ E GMQ+S LA ALA   F   P+V+VP A+ +V
Sbjct: 242 YLLGFFAAKWTGLPYDA----QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSV 297

Query: 399 IMSLMGFFLVMLWAKKSE 416
             ++ G  L   WA K+ 
Sbjct: 298 WHNISGSLLATYWAAKAG 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 59/431 (13%), Positives = 118/431 (27%), Gaps = 88/431 (20%)

Query: 38  LSFSTSWCPVHFRSISHSNL-KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQ 96
           + F T      ++ I       F    NF    V +          + +++  S   ++ 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSG 63

Query: 97  EFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYY----APALGFLMFAVGVNS 152
              L   L      +    +       V   ++ +  +        P++   M+    + 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 153 SEKDFIEAFK-----RPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVS 207
              D  + F      R             ++P          V + G+    G+G    +
Sbjct: 119 LYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKN-------VLIDGVL---GSG---KT 164

Query: 208 CVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL-IGKRLPVDVKGMVS 266
            V+     +Y             + + + ++   V +  L  LL  I            +
Sbjct: 165 WVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 267 SILQIVVVPIA-AGLLLNRFFPR-------ICNA--IRPFLPPLSVLVT------ACCVG 310
             L+I  +      LL ++ +         + NA     F     +L+T         + 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 311 APLAINIESVMSPFGLT------ILLLII---TFHLSAFVAG---YVVTGLAFAEAHDVK 358
           A    +I        LT      +LL  +      L   V       ++ +A     D  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGL 341

Query: 359 A-LQRTLSY-----ETGMQSSLLAL--ALANRFFQD----PL-VSVPPAISTVIMSLMGF 405
           A              T ++SSL  L  A   + F      P    +P  +          
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---------- 391

Query: 406 FLVMLWAKKSE 416
            L ++W    +
Sbjct: 392 -LSLIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=8.6e-51  Score=406.07  Aligned_cols=305  Identities=30%  Similarity=0.504  Sum_probs=284.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH
Q 014893          100 LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP  179 (416)
Q Consensus       100 ~~~~l~~l~~~l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P  179 (416)
                      +++..++++|++++++++++++|+++|+.+.+++ .+++++++++||.+|++++.+|+++.++|||.+..++++||+++|
T Consensus         9 l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P   87 (332)
T 3zux_A            9 LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP   87 (332)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            5667888899999999999999999999999886 788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893          180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV  259 (416)
Q Consensus       180 lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v  259 (416)
                      +++|++++    .++++++++.|+++++||||+.+|++||+++|||. ++++.++.++|+++++++|+++.++.|+.+++
T Consensus        88 ll~~~l~~----~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v  162 (332)
T 3zux_A           88 ATAWCLSK----LLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI  162 (332)
T ss_dssp             HHHHHHHH----HTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHH----HhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            99999984    57999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 014893          260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA  339 (416)
Q Consensus       260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~  339 (416)
                      |+.+++.+++.++++|+++|+++|++.|++.+++++.++.++.++++++++..++.+++.+.+. .+.+....++++.++
T Consensus       163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~  241 (332)
T 3zux_A          163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIG  241 (332)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888888887766653 456677788999999


Q ss_pred             HHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893          340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKS  415 (416)
Q Consensus       340 f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~-~p~~alp~~iy~v~q~i~~~~la~~w~~r~  415 (416)
                      |.+||+++|. ++.++   +|++|+++|+|+||+++|+++|..+|+ +|++++|+++|+++|++.++.++.+|+||+
T Consensus       242 ~~lg~~~~r~-~~~~~---~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~  314 (332)
T 3zux_A          242 YLLGFFAAKW-TGLPY---DAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA  314 (332)
T ss_dssp             HHHHHHHHHH-TTCCH---HHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-hCCCH---hHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999984 57765   899999999999999999999999996 689999999999999999999999999886

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00