Citrus Sinensis ID: 014896

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MTAATTAPTPPSLAVVNASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAISTRYSH
ccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccEEEEEccEEEEEEccEEEEEEEEccccccccccccccccccccc
ccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHccccEEEcHHHHcHccccHHHcccccccEEEEEEHHcccccccccHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEccccEEccccccEEEEEEcccccccccccccEEEEEcccc
mtaattaptppslAVVNASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISqlstpygtsAQRVAAYFSEAMSARLVSSCLGIYaalpslpqthtQKMVSAFQVFngispfvkfshFTANQAIQEAFEredrvhiidldimqglqwpglfhilasrpggppyvrltglgtsMEALEATGKRLSDFAEklglpfefcpvaekvgnldperlniSKREAVAVHWLQHSLydvtgsdtntlcllqrlapKVVTVVEQdlspagsfLGRFVEAIHYYSALFDSlgasygeeseeRHVVEQQLLSREIRNVLavggpsrsgdvkfhnWREKLQRSGFKGISLAGNAATQATLLLgmfpcdgytlvedngtlklgwKDLCLLTasawrplihhpcnninaistrysh
mtaattaptppslavvnASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLavggpsrsgdvkfHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAwrplihhpcnninaistrysh
MtaattaptppSLAVVNASIREKKEEIRQQKRDEEGlhlltlllQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAISTRYSH
***********************************GLHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYG*******VVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAI******
****************************************TLLLQCAEAVSADNLEEANKMLLEISQLS****TSAQRVAAYFSEAMSARLVSSCL**************QKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRP******************
**********PSLAVVNASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASY**********EQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAISTRYSH
*************************EIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAISTRYS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTAATTAPTPPSxxxxxxxxxxxxxxxxxxxxxxxxxHLLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPLIHHPCNNINAISTRYSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q9M384653 Protein SCARECROW OS=Arab yes no 0.944 0.601 0.875 0.0
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.911 0.484 0.881 0.0
Q9AVK4819 Protein SCARECROW OS=Pisu N/A no 0.858 0.435 0.896 0.0
Q2RB59651 Protein SCARECROW 1 OS=Or yes no 0.894 0.571 0.805 1e-175
Q9FUZ7668 Protein SCARECROW OS=Zea N/A no 0.925 0.576 0.796 1e-173
Q2QYF3660 Protein SCARECROW 2 OS=Or yes no 0.911 0.574 0.803 1e-171
A2ZHL0660 Protein SCARECROW 2 OS=Or N/A no 0.911 0.574 0.803 1e-171
A2ZAX5659 Protein SCARECROW 1 OS=Or N/A no 0.911 0.575 0.801 1e-170
Q9FHZ1405 Scarecrow-like protein 23 no no 0.894 0.918 0.563 1e-118
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.831 0.644 0.392 1e-61
>sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1 Back     alignment and function desciption
 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/395 (87%), Positives = 370/395 (93%), Gaps = 2/395 (0%)

Query: 6   TAPTPPSLAVVNASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEI 65
           TA  P        ++RE+KEEI++QK+DEEGLHLLTLLLQCAEAVSADNLEEANK+LLEI
Sbjct: 257 TATVPAVQTNTAEALRERKEEIKRQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEI 316

Query: 66  SQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPS--LPQTHTQKMVSAFQVFNGI 123
           SQLSTPYGTSAQRVAAYFSEAMSARL++SCLGIYAALPS  +PQTH+ KMVSAFQVFNGI
Sbjct: 317 SQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGI 376

Query: 124 SPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGL 183
           SP VKFSHFTANQAIQEAFE+ED VHIIDLDIMQGLQWPGLFHILASRPGGPP+VRLTGL
Sbjct: 377 SPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGL 436

Query: 184 GTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLY 243
           GTSMEAL+ATGKRLSDFA+KLGLPFEFCP+AEKVGNLD ERLN+ KREAVAVHWLQHSLY
Sbjct: 437 GTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLY 496

Query: 244 DVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEES 303
           DVTGSD +TL LLQRLAPKVVTVVEQDLS AGSFLGRFVEAIHYYSALFDSLGASYGEES
Sbjct: 497 DVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEES 556

Query: 304 EERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLL 363
           EERHVVEQQLLS+EIRNVLAVGGPSRSG+VKF +WREK+Q+ GFKGISLAGNAATQATLL
Sbjct: 557 EERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGFKGISLAGNAATQATLL 616

Query: 364 LGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRP 398
           LGMFP DGYTLV+DNGTLKLGWKDL LLTASAW P
Sbjct: 617 LGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Also required for normal shoot gravitropism. Regulates the radial organization of the shoot axial organs. Binds to the promoter of MGP, NUC, RLK and SCL3. Restricts SHR movment and sequesters it into the nucleus of the endodermis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q2RB59|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUZ7|SCR_MAIZE Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q2QYF3|SCR2_ORYSJ Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1 Back     alignment and function description
>sp|A2ZHL0|SCR2_ORYSI Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2 Back     alignment and function description
>sp|A2ZAX5|SCR1_ORYSI Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2 Back     alignment and function description
>sp|Q9FHZ1|SCL23_ARATH Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
255557909 843 transcription factor, putative [Ricinus 0.956 0.472 0.912 0.0
224139438 770 GRAS family transcription factor [Populu 0.911 0.492 0.941 0.0
224069804 847 GRAS family transcription factor [Populu 0.918 0.451 0.916 0.0
225439035 782 PREDICTED: protein SCARECROW-like [Vitis 0.906 0.482 0.926 0.0
449459630 859 PREDICTED: LOW QUALITY PROTEIN: protein 0.911 0.441 0.902 0.0
56605382 858 SCARECROW [Cucumis sativus] gi|56605384| 0.911 0.441 0.902 0.0
449511533 858 PREDICTED: uncharacterized protein LOC10 0.911 0.441 0.902 0.0
297816728 646 hypothetical protein ARALYDRAFT_485819 [ 0.954 0.614 0.860 0.0
229615780 776 scarecrow 1 [Lupinus albus] gi|229615790 0.935 0.501 0.866 0.0
15232451 653 protein scarecrow [Arabidopsis thaliana] 0.944 0.601 0.875 0.0
>gi|255557909|ref|XP_002519983.1| transcription factor, putative [Ricinus communis] gi|223540747|gb|EEF42307.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/398 (91%), Positives = 376/398 (94%)

Query: 2   TAATTAPTPPSLAVVNASIREKKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKM 61
           T    A TP S+     S REKKEE RQQKRDEEGLHLLTLLLQCAEAVSADN EEANKM
Sbjct: 417 TEHVAASTPASVPTPPTSAREKKEEQRQQKRDEEGLHLLTLLLQCAEAVSADNFEEANKM 476

Query: 62  LLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFN 121
           LLEISQLSTPYGTSAQRVAAYFSEAMSARL++SCLGIYA LPS+P THTQKM SAFQVFN
Sbjct: 477 LLEISQLSTPYGTSAQRVAAYFSEAMSARLINSCLGIYATLPSMPLTHTQKMASAFQVFN 536

Query: 122 GISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLT 181
           GISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLT
Sbjct: 537 GISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLT 596

Query: 182 GLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHS 241
           GLGTS+EALEATGKRLSDFA+KLGLPFEF PVA+KVGNLDP+RLN+SKREAVAVHWLQHS
Sbjct: 597 GLGTSIEALEATGKRLSDFAQKLGLPFEFFPVADKVGNLDPDRLNVSKREAVAVHWLQHS 656

Query: 242 LYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGE 301
           LYDVTGSD+NTL LLQRLAPKVVTVVEQDLS AGSFLGRFVEAIHYYSALFDSLGASYGE
Sbjct: 657 LYDVTGSDSNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGE 716

Query: 302 ESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQAT 361
           ESEERHVVEQQLLSREIRNVLAVGGPSRSG+VKFHNWREKL++SGFKGISLAGNAATQAT
Sbjct: 717 ESEERHVVEQQLLSREIRNVLAVGGPSRSGEVKFHNWREKLRQSGFKGISLAGNAATQAT 776

Query: 362 LLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWRPL 399
           LLLGMFP DGYTLVEDNGTLKLGWKDLCLLTASAWRP 
Sbjct: 777 LLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPF 814

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139438|ref|XP_002323112.1| GRAS family transcription factor [Populus trichocarpa] gi|222867742|gb|EEF04873.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224069804|ref|XP_002326418.1| GRAS family transcription factor [Populus trichocarpa] gi|222833611|gb|EEE72088.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439035|ref|XP_002264349.1| PREDICTED: protein SCARECROW-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459630|ref|XP_004147549.1| PREDICTED: LOW QUALITY PROTEIN: protein SCARECROW-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|56605382|emb|CAI30892.1| SCARECROW [Cucumis sativus] gi|56605384|emb|CAI30893.1| SCARECROW [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511533|ref|XP_004163982.1| PREDICTED: uncharacterized protein LOC101230653 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816728|ref|XP_002876247.1| hypothetical protein ARALYDRAFT_485819 [Arabidopsis lyrata subsp. lyrata] gi|297322085|gb|EFH52506.1| hypothetical protein ARALYDRAFT_485819 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|229615780|gb|ACQ84011.1| scarecrow 1 [Lupinus albus] gi|229615790|gb|ACQ84012.1| scarecrow 1 [Lupinus albus] Back     alignment and taxonomy information
>gi|15232451|ref|NP_190990.1| protein scarecrow [Arabidopsis thaliana] gi|75183648|sp|Q9M384.1|SCR_ARATH RecName: Full=Protein SCARECROW; Short=AtSCR; AltName: Full=GRAS family protein 20; Short=AtGRAS-20; AltName: Full=Protein SHOOT GRAVITROPISM 1 gi|6822068|emb|CAB70996.1| SCARECROW1 [Arabidopsis thaliana] gi|15810553|gb|AAL07164.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|19423878|gb|AAL87315.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|21281201|gb|AAM45039.1| putative SCARECROW1 protein [Arabidopsis thaliana] gi|332645679|gb|AEE79200.1| protein scarecrow [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.913 0.581 0.876 1.9e-177
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.838 0.861 0.584 1.4e-105
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.846 0.688 0.373 1.6e-56
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.855 0.650 0.369 8.6e-56
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.5 0.431 0.386 2.6e-55
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.846 0.660 0.373 1.9e-53
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.846 0.599 0.375 6.3e-53
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.855 0.680 0.357 4.4e-52
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.822 0.585 0.369 1.2e-51
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.836 0.710 0.352 1.9e-51
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
 Identities = 335/382 (87%), Positives = 359/382 (93%)

Query:    19 SIREKKEEIRQQKRDEEGXXXXXXXXQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQR 78
             ++RE+KEEI++QK+DEEG        QCAEAVSADNLEEANK+LLEISQLSTPYGTSAQR
Sbjct:   270 ALRERKEEIKRQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQR 329

Query:    79 VAAYFSEAMSARLVSSCLGIYAALPS--LPQTHTQKMVSAFQVFNGISPFVKFSHFTANQ 136
             VAAYFSEAMSARL++SCLGIYAALPS  +PQTH+ KMVSAFQVFNGISP VKFSHFTANQ
Sbjct:   330 VAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQ 389

Query:   137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKR 196
             AIQEAFE+ED VHIIDLDIMQGLQWPGLFHILASRPGGPP+VRLTGLGTSMEAL+ATGKR
Sbjct:   390 AIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKR 449

Query:   197 LSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLL 256
             LSDFA+KLGLPFEFCP+AEKVGNLD ERLN+ KREAVAVHWLQHSLYDVTGSD +TL LL
Sbjct:   450 LSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLL 509

Query:   257 QRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSR 316
             QRLAPKVVTVVEQDLS AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLS+
Sbjct:   510 QRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSK 569

Query:   317 EIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVE 376
             EIRNVLAVGGPSRSG+VKF +WREK+Q+ GFKGISLAGNAATQATLLLGMFP DGYTLV+
Sbjct:   570 EIRNVLAVGGPSRSGEVKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVD 629

Query:   377 DNGTLKLGWKDLCLLTASAWRP 398
             DNGTLKLGWKDL LLTASAW P
Sbjct:   630 DNGTLKLGWKDLSLLTASAWTP 651
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009630 "gravitropism" evidence=IMP
GO:0009956 "radial pattern formation" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0051457 "maintenance of protein location in nucleus" evidence=IMP
GO:0008356 "asymmetric cell division" evidence=IMP
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2RB59SCR1_ORYSJNo assigned EC number0.80530.89420.5714yesno
Q2QYF3SCR2_ORYSJNo assigned EC number0.80360.91100.5742yesno
Q9M384SCR_ARATHNo assigned EC number0.87590.94470.6018yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS2
GRAS family transcription factor (565 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-169
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  478 bits (1233), Expect = e-169
 Identities = 191/372 (51%), Positives = 260/372 (69%), Gaps = 13/372 (3%)

Query: 39  LLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGI 98
           L+ LLL CAEAVS+ +L  A  +L  ++QL++P G   QR+AAYF+EA++ARL  S   I
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 99  YAALPSLPQT--HTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIM 156
           Y+ALP  P T   + ++++A+++F  +SP++KF HFTANQAI EAFE E+RVHIID DI 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 157 QGLQWPGLFHILASRPGGPPYVRLTGLG----TSMEALEATGKRLSDFAEKLGLPFEFCP 212
           QGLQWP L   LASRPGGPP++R+TG+G    +S E LE TG RL+ FA+ LG+PFEF P
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 213 -VAEKVGNLDPERLNISKREAVAVHWLQ--HSLYDVTGSDTN--TLCLLQRLAPKVVTVV 267
            VA+++ +LD E L++   EA+AV+ +   H L D + S  +   L L++ L PKVVT+V
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTLV 240

Query: 268 EQDLS-PAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGG 326
           EQ+ +  +  FL RFVEA+HYYSALFDSL A+   +SEER  VE++LL REI NV+A  G
Sbjct: 241 EQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACEG 300

Query: 327 PSRSGDVK-FHNWREKLQRSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGW 385
             R    + F  WRE+++R+GF+ + L+  A  QA LLL ++  DGY + EDNG+L LGW
Sbjct: 301 AERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLGW 360

Query: 386 KDLCLLTASAWR 397
           K   L+ ASAWR
Sbjct: 361 KGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.14
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.4
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.09
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.73
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 93.14
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 92.08
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 91.56
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 90.46
PRK06202232 hypothetical protein; Provisional 89.35
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 89.04
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 88.72
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 88.2
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 87.76
PRK11207197 tellurite resistance protein TehB; Provisional 86.77
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 86.28
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 85.97
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 85.39
PLN02233261 ubiquinone biosynthesis methyltransferase 85.3
PRK12335287 tellurite resistance protein TehB; Provisional 84.84
PRK08317241 hypothetical protein; Provisional 84.65
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 84.33
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 84.14
PLN02336475 phosphoethanolamine N-methyltransferase 83.12
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 82.95
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 82.2
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 81.31
COG2227243 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- 81.2
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-109  Score=839.91  Aligned_cols=359  Identities=50%  Similarity=0.838  Sum_probs=336.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCCCChhhhHHHHHHHHHHhhhhcCCccccccCCCCCcc--cHHHHHHH
Q 014896           39 LLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQT--HTQKMVSA  116 (416)
Q Consensus        39 L~~lL~~CA~Av~~g~~~~A~~lL~~L~~~asp~Gd~~qRla~yF~eAL~~Rl~~~~~~~y~~~~~~~~~--~~~~~~~a  116 (416)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+++++.|..++..+..  ...++..+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999998888766432221  25678899


Q ss_pred             HHHHHccCCccchhHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCC----CHHHHHH
Q 014896          117 FQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEA  192 (416)
Q Consensus       117 ~~~f~~~~P~~kfa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~----~~~~l~~  192 (416)
                      |+.||+.|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||++    +.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999    6789999


Q ss_pred             HHHHHHHHHHHcCCCeEEEe-ccccccccCccccccCCCceEEEeee---cccccccC---CCchHHHHHHHhcCCcEEE
Q 014896          193 TGKRLSDFAEKLGLPFEFCP-VAEKVGNLDPERLNISKREAVAVHWL---QHSLYDVT---GSDTNTLCLLQRLAPKVVT  265 (416)
Q Consensus       193 tg~rL~~~A~~lgvpFeF~~-v~~~~e~l~~~~l~~~~~EalaVn~l---~h~l~~~~---~~~~~~L~~ir~L~P~vvt  265 (416)
                      ||++|.+||+++||||||++ +..+++++++++|++++||+|||||+   ||++.+..   .+++.+|+.||+|+|+|||
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv  240 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV  240 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999 47799999999999999999999984   55543221   2356799999999999999


Q ss_pred             EeccCCCCC-CChhHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCcccc-cccccHHHHHH
Q 014896          266 VVEQDLSPA-GSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGD-VKFHNWREKLQ  343 (416)
Q Consensus       266 lvE~ea~~~-~~F~~RF~eaL~yYsalFDsLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~er-e~~~~W~~rm~  343 (416)
                      ++|+|++|| ++|++||.|||+||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+|| |++++|+.||+
T Consensus       241 ~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~  320 (374)
T PF03514_consen  241 LVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMR  320 (374)
T ss_pred             EEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHH
Confidence            999999987 5899999999999999999999999999999999999999999999999999999997 79999999999


Q ss_pred             cCCCccccCChhHHHHHHHHhcCCCCCCcEEEEeCCEEEEEECCceEEEEeecc
Q 014896          344 RSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWR  397 (416)
Q Consensus       344 ~aGF~~~~ls~~~~~qa~~ll~~~~~~gy~v~e~~g~L~LgWk~~pL~~~SaW~  397 (416)
                      +|||+++|+|+.+++|||+++++|+++||+|++++|||+|||||+||+++|+||
T Consensus       321 ~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  321 RAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999888999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 74/439 (16%), Positives = 115/439 (26%), Gaps = 152/439 (34%)

Query: 19  SIREKKE--EIRQQKRDEEGLH-LLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTS 75
           SI  K+E   I   K    G   L   LL   E +    +EE          L   Y   
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV---------LRINYK-- 92

Query: 76  AQRVAAYFSEAMSARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFTAN 135
                 +    +               PS+      +     +++N    F K++     
Sbjct: 93  ------FLMSPIKTEQRQ---------PSMMTRMYIEQRD--RLYNDNQVFAKYN----- 130

Query: 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRL---TGLGTSMEALEA 192
                   R          + Q L    L      RP     V +    G G +  AL+ 
Sbjct: 131 ------VSRLQPYL----KLRQALL--EL------RPA--KNVLIDGVLGSGKTWVALDV 170

Query: 193 TGKRLSDFAEKLGLPFE-F--------CP--VAEKVGNL----DP---ERLNISKREAVA 234
                  +  +  + F+ F         P  V E +  L    DP    R + S    + 
Sbjct: 171 ----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 235 VHWLQHSL--------Y--------DVTGSDTNTL------C--LL--------QRLAPK 262
           +H +Q  L        Y        +V   +          C  LL          L+  
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 263 VVTVVEQDLSPAGSFLGRFVEAIHYYSALFDS-LGASYGEESEERHVVEQQLLS---REI 318
             T +  D                   +L    L     +   E      + LS     I
Sbjct: 285 TTTHISLDHHSMT-----LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 319 RNVLAVGGPSRSGDVKFHNWR----EKLQRSGFKGISLAGNAATQATL-----LLGMFPC 369
           R+     G +      + NW+    +KL       I  + N    A        L +FP 
Sbjct: 338 RD-----GLAT-----WDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 370 DGYTLVEDNGTLKLGWKDL 388
                +     L L W D+
Sbjct: 384 S--AHIPTI-LLSLIWFDV 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 96.99
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.95
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.13
3dp7_A363 SAM-dependent methyltransferase; structural genomi 94.89
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.99
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.93
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 93.75
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 93.45
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 93.4
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.35
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 93.23
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.13
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.11
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 92.78
1vl5_A260 Unknown conserved protein BH2331; putative methylt 91.98
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 91.69
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 91.41
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 91.34
3hnr_A220 Probable methyltransferase BT9727_4108; structural 91.25
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 91.14
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 90.96
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.79
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 90.36
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 90.19
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 90.11
3ocj_A305 Putative exported protein; structural genomics, PS 89.51
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.36
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 88.64
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 88.63
3m70_A286 Tellurite resistance protein TEHB homolog; structu 88.44
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 88.39
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 87.7
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 87.61
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 87.52
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 87.3
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 87.15
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 87.11
1xxl_A239 YCGJ protein; structural genomics, protein structu 86.84
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 86.52
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 86.26
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 85.95
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 85.73
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 85.65
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 85.55
3lcc_A235 Putative methyl chloride transferase; halide methy 85.52
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 85.5
3giw_A277 Protein of unknown function DUF574; rossmann-fold 85.47
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 85.33
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 85.2
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 85.02
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 84.79
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 84.7
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 84.49
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 83.53
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 83.44
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 83.39
2p7i_A250 Hypothetical protein; putative methyltransferase, 83.36
3f4k_A257 Putative methyltransferase; structural genomics, P 83.18
3cc8_A230 Putative methyltransferase; structural genomics, j 81.03
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 80.48
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=96.99  E-value=0.0065  Score=57.70  Aligned_cols=109  Identities=13%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcccc
Q 014896          146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERL  225 (416)
Q Consensus       146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l  225 (416)
                      ..-+|+|+|.|.|.    +...|+.+- +.|..+||||+.+...++.+.+++.++.  ...+++|..  ..+.++..   
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~--~D~~~~~~---  137 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIE--GDIRDIAI---  137 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEE--SCTTTCCC---
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEee--cccccccc---
Confidence            34579999999884    445566553 3467899999999998988887765432  223455542  23444332   


Q ss_pred             ccCCCceEEEee-ecccccccCCCchHHHHHH-HhcCCcEE-EEeccCC
Q 014896          226 NISKREAVAVHW-LQHSLYDVTGSDTNTLCLL-QRLAPKVV-TVVEQDL  271 (416)
Q Consensus       226 ~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~i-r~L~P~vv-tlvE~ea  271 (416)
                        .+-++++.|+ +||+ .+  .....+|..| +.|+|.-. ++.|.-.
T Consensus       138 --~~~d~v~~~~~l~~~-~~--~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          138 --ENASMVVLNFTLQFL-EP--SERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             --CSEEEEEEESCGGGS-CH--HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             --cccccceeeeeeeec-Cc--hhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence              2334555565 4553 21  1234566654 77999854 5666533
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.72
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 95.76
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.66
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 95.54
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 92.96
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 92.88
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 92.68
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.24
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 92.06
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 91.73
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 91.38
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 90.9
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 90.78
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 90.35
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 89.12
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 86.05
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 85.37
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 83.8
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 83.69
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 82.26
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 81.48
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.013  Score=51.31  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccc
Q 014896          145 EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPER  224 (416)
Q Consensus       145 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~  224 (416)
                      ...-||+|+|.|.|.    +...|+.. -..|..++|||+.+.+-++.+.+++.    ..+....++.+.....++..  
T Consensus        38 ~~~~~vLDlGCGtG~----~~~~l~~~-~~~~~~~v~giD~S~~ml~~A~~~~~----~~~~~~~~~~~~~d~~~~~~--  106 (225)
T d1im8a_          38 TADSNVYDLGCSRGA----ATLSARRN-INQPNVKIIGIDNSQPMVERCRQHIA----AYHSEIPVEILCNDIRHVEI--  106 (225)
T ss_dssp             CTTCEEEEESCTTCH----HHHHHHHT-CCCSSCEEEEECSCHHHHHHHHHHHH----TSCCSSCEEEECSCTTTCCC--
T ss_pred             CCCCEEEEeccchhh----HHHHHHHh-hcCCCCceEEeCCCHHHHHHHHHHhH----hhcccchhhhccchhhcccc--
Confidence            345589999998884    33445433 22467899999999998988877775    33444444433333333322  


Q ss_pred             cccCCCceEEEe-eecccccccCCCchHHHHHH-HhcCCcEE-EEeccC
Q 014896          225 LNISKREAVAVH-WLQHSLYDVTGSDTNTLCLL-QRLAPKVV-TVVEQD  270 (416)
Q Consensus       225 l~~~~~EalaVn-~l~h~l~~~~~~~~~~L~~i-r~L~P~vv-tlvE~e  270 (416)
                         .+..+++.+ ++||+ .  ......+|+.+ +.|+|.-. ++.|.-
T Consensus       107 ---~~~d~i~~~~~l~~~-~--~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         107 ---KNASMVILNFTLQFL-P--PEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             ---CSEEEEEEESCGGGS-C--GGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---ccceeeEEeeecccc-C--hhhHHHHHHHHHHhCCCCceeeccccc
Confidence               122333334 34443 2  12344677665 77999865 555543
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure