Citrus Sinensis ID: 014898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MQYSIPCSNTRLNFEPYTTHISSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mqysipcsntrlnfepytthisshrltrtQLQLRSqsissskssdQLILRSQSQFqsrlhvkpiwnspithprnpentnfrltnfgplhcgissntadannsRSFREWIELIGELISTAFPIWVSLGCLlglvkpssfnwvqpkWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSkllnlpshyAAGLIlvgccpggtasnIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKfvsplmppiaVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASqhfgspmaavpcavSSVCHSIFGSVLAGIWRRSTPK
Flexible Loop (DISEMBL)
mqysipcsntrlnfepYTTHISSHRLTRTQLQLRSQSissskssdqLILRSQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGsvlagiwrrstpk
Low Complexity Region (SEG)
MQYSIPCSNTRLNFEPYTTHISSHRLTRTqlqlrsqsissskssdqlilrsQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWtiigltltmlgmgmtltlDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK
Disordered region (IsUnstruct)
***********************************************************HVKPIWNS**********TNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGN**************QVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWR*****
Disordered Region (DISOPRED)
*********TR**************************************************************************************************ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRST**
Disordered Region (DISEMBL)
MQYSIPCSNTRLNFEPYTTHISSHRLTRT**************************QSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK
Disordered Region (DISPRO)
******CS*TRLNFEPYTTHISSHRLTRTQLQLRSQS****KSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSN*****NSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRS***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQYSIPCSNTRLNFEPYTTHISSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q93YR2	401	Probable sodium/metabolit	yes	no	0.901	0.935	0.711	1e-156
Q7XVB3	406	Probable sodium/metabolit	yes	no	0.923	0.945	0.593	1e-121
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.723	0.735	0.483	2e-67
Q5VRB2	419	Probable sodium/metabolit	no	no	0.757	0.751	0.456	3e-67
O34524	321	Uncharacterized sodium-de	yes	no	0.735	0.953	0.392	5e-54
Q6K739	423	Probable sodium/metabolit	no	no	0.668	0.657	0.382	4e-43
F4JPW1	407	Probable sodium/metabolit	no	no	0.754	0.771	0.322	8e-42
Q650U0	401	Probable sodium/metabolit	no	no	0.692	0.718	0.348	1e-39
B8BDK4	401	Probable sodium/metabolit	N/A	no	0.692	0.718	0.348	1e-39
Q8RXE8	431	Probable sodium/metabolit	no	no	0.766	0.740	0.334	7e-39

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/398 (71%), Positives = 320/398 (80%), Gaps = 23/398 (5%)

Query: 22  SSHRLTRTQLQLRSQS---ISSSKSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENT 78
           S H+   T L LR+ S   +S S SS ++ L++QS                T P +   +
Sbjct: 20  SLHKSRLTPLHLRTISCSRLSYSPSSREISLKTQS----------------TVPISCRRS 63

Query: 79  NFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSF 138
            F   +F P  CGISSN       +SF EW+E +GE +STAFPIWVSLGCLLGL++PS+F
Sbjct: 64  RF---DFVP-RCGISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTF 119

Query: 139 NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198
           NWV P WTI+GLT+TMLGMGMTLTLDDLRGAL+MPKE+ +GF+LQYSVMP+S F VSKLL
Sbjct: 120 NWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLL 179

Query: 199 NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAG 258
           NLP HYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAST+SAV+MTP LTAKLA 
Sbjct: 180 NLPPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAK 239

Query: 259 QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIA 318
           QY+ VDA+GL MSTLQVVLLPVL GAFLNQYF  LVKFVSP+MPPIAVGTVAILCG AI 
Sbjct: 240 QYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIG 299

Query: 319 QSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVL 378
           Q+ASAIL SG QV LA+ LLH SGF FGY+ +R+LGIDVAS RTISIEVGMQNSVLGVVL
Sbjct: 300 QNASAILMSGKQVVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNSVLGVVL 359

Query: 379 ASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
           A+QHFG+P+ AVPCAVSSVCHSI GSVLAGIWRRS PK
Sbjct: 360 ATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSAPK 397

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/408 (59%), Positives = 298/408 (73%), Gaps = 24/408 (5%)

Query: 9   NTRLNFEPYTTHISSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPIWNSP 68
           + RL+   ++TH + HR T + L +    I  S S+    +R         H+  I +S 
Sbjct: 19  DKRLHL--FSTHNTRHRATVSSLPVTCLRIRYSSSNP---VR---------HLCGIPSSR 64

Query: 69  ITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGC 128
                +P  +       G L  G+            +R+ +  +GE++S  FP+WV+  C
Sbjct: 65  CHAAADPAPSKIPGGGSGALEAGVVG----------WRDLLLQVGEVLSLGFPVWVASAC 114

Query: 129 LLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMP 188
            + L +P +F WV P   I+G++ TMLGMGMTLTLDDL+ AL MPKE+ SGF+LQYSVMP
Sbjct: 115 AVALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGFLLQYSVMP 174

Query: 189 ISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVM 248
           +SGFL+SKLLNLPS+YAAGLILV CCPGGTASNIVTY+ARGNVALSVLMTAAST +A  +
Sbjct: 175 LSGFLISKLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVALSVLMTAASTFAAAFL 234

Query: 249 TPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGT 308
           TP LT+KLAGQYVAVD MGLF+ST QVVL PVL GA LNQY + LV+ VSPLMP IAV T
Sbjct: 235 TPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQLVSPLMPFIAVAT 294

Query: 309 VAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVG 368
           VA+LCGNAIAQ+ASAIL+SG QV ++   LHASGFFFGYVL+R +GID++S RTISIEVG
Sbjct: 295 VAVLCGNAIAQNASAILSSGLQVVMSVCWLHASGFFFGYVLSRTIGIDISSSRTISIEVG 354

Query: 369 MQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
           MQNSVLGVVLAS+HFG+P+ AVPCAVSSVCHS++GS+LAGIWR   P 
Sbjct: 355 MQNSVLGVVLASKHFGNPLTAVPCAVSSVCHSVYGSLLAGIWRSLPPN 402

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/302 (48%), Positives = 192/302 (63%), Gaps = 1/302 (0%)

Query: 110 ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGA 169
           E I EL++T FP+WV LG L+G+ KPS   W++     +GL   ML MG+TLT +D R  
Sbjct: 95  EKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRC 154

Query: 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229
           L  P  +  GF+ QY + PI GFL++  L L +  A GLILV CCPGG ASN+ TYI++G
Sbjct: 155 LRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKG 214

Query: 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289
           NVALSVLMT  ST+ A++MTP LT  LAGQ V VDA GL +ST QVVL+P + G   N++
Sbjct: 215 NVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEF 274

Query: 290 FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349
           F      +  + P I V    +LC + I Q A  + T G Q+ L   LLHA+ F  GY +
Sbjct: 275 FPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALLHAAAFAIGYWI 334

Query: 350 ARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGI 409
           ++      ++ RTISIE GMQ+S LG +LA +HF +P+ AVP AVS VC ++ GS LA  
Sbjct: 335 SK-FSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVF 393

Query: 410 WR 411
           WR
Sbjct: 394 WR 395

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/322 (45%), Positives = 199/322 (61%), Gaps = 7/322 (2%)

Query: 97  ADANNSRSFREWI-------ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIG 149
           A+AN S +  E I       E I EL++T FP+WV LG ++G+ KPS   W++     +G
Sbjct: 84  AEANISSNLPESIPSEANQYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWLETDLFTVG 143

Query: 150 LTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLI 209
           L   ML MG+TLT +D R  +  P  +  GF+ QY + P+ GF ++  L L +  A GLI
Sbjct: 144 LGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLI 203

Query: 210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLF 269
           LV CCPGG ASN+ TYI++GNVALSVLMT  ST+ A+VMTP LT  LAGQ V VDA GL 
Sbjct: 204 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 263

Query: 270 MSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGP 329
           +ST QVVLLP + G   ++YF    + +  + P I V    +LC + I Q +  +   G 
Sbjct: 264 ISTFQVVLLPTIVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPIGQVSEVLKAQGG 323

Query: 330 QVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAA 389
           Q+ +   LLH + F  GY L+++     ++ RTISIE GMQ+S LG +LA +HF +P+ A
Sbjct: 324 QLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVA 383

Query: 390 VPCAVSSVCHSIFGSVLAGIWR 411
           VP AVS VC ++ GS LA  WR
Sbjct: 384 VPSAVSVVCMALGGSALAVFWR 405

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O34524|YOCS_BACSU Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1

 Score =  212 bits (539), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 181/308 (58%), Gaps = 2/308 (0%)

Query: 109 IELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRG 168
           I  I       F IWV +  +LG   PS F W+    TI  L + M GMG+TL  DD + 
Sbjct: 4   IRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWISSYITIF-LGIIMFGMGLTLQADDFKE 62

Query: 169 ALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIAR 228
            +  P ++I G + QY++MP+  F ++  L+LP+  A G+ILVGCCPGGTASN++T++A+
Sbjct: 63  LVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAK 122

Query: 229 GNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQ 288
           GN ALSV +T  STL A V+TP L    A +++ V    LF+S LQ VL P++ G  +  
Sbjct: 123 GNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKM 182

Query: 289 YFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV 348
           +F   V      +P ++V  +  +    ++ +   +L SG  +     L +  G+  G++
Sbjct: 183 FFRKQVAKAVHALPLVSVIGIVAIVSAVVSGNRENLLQSGLLIFSVVILHNGIGYLLGFL 242

Query: 349 LARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
            A++L +D  S + I+IEVGMQNS LG  LA+ HF SP++AVP A+ SV H++ GS+LA 
Sbjct: 243 CAKLLKMDYPSQKAIAIEVGMQNSGLGAALATAHF-SPLSAVPSAIFSVWHNLSGSMLAT 301

Query: 409 IWRRSTPK 416
            W +   K
Sbjct: 302 YWSKKVKK 309

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 166/282 (58%), Gaps = 4/282 (1%)

Query: 132 LVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISG 191
           L  P++F+WV  ++    L   ML +G+ L++DD   A   P  +  G++ QY V P+ G
Sbjct: 120 LGNPATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRPVPLTIGYMAQYIVKPLMG 179

Query: 192 FLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPF 251
            L+++   +PS + AG +L  C  G   S+  +++++G+VALS+L+T+ ST+S+VV+TP 
Sbjct: 180 VLIARAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVALSILLTSCSTISSVVVTPV 239

Query: 252 LTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAI 311
           LT  L G  V VD + +  S LQVVL+PV  G  LN Y  ++V  + P+MP +A+   ++
Sbjct: 240 LTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCTSL 299

Query: 312 LCGNAIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLAR--MLGIDVASCRTISIEVG 368
             G+ +A + S IL+S G  + L     H + F  GY +++  ML  +   CRTIS+  G
Sbjct: 300 CIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKLPMLRQEEPVCRTISVCTG 359

Query: 369 MQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIW 410
           MQ+S L  +LA+Q  GS   AVP A S V  +IFG  LA  W
Sbjct: 360 MQSSTLAGLLATQFLGSSQ-AVPAACSVVIMAIFGLTLASYW 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  171 bits (434), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 178/329 (54%), Gaps = 15/329 (4%)

Query: 97  ADANNSRSFREWIELIGELISTAF---PIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLT 153
           ++++++  + + +  I E +  A+   P  + L  +L LV P SF W +P++ + GL   
Sbjct: 76  SESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYFVPGLGFM 135

Query: 154 MLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS----KLLNLPSHYAAGLI 209
           M  +G+     D   AL  P  I +G++ QY + P+ G++       L NLP+   AG++
Sbjct: 136 MFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIM 195

Query: 210 LVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL 268
           LV C  G   SN  T++   ++A LS++MT+ ST +AV++TP L+  L G+ + VD  G+
Sbjct: 196 LVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGM 255

Query: 269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTS- 327
             S LQVV+ P+  G  LN+ F  L   + P +P + V  ++   G  +A +  +IL+  
Sbjct: 256 ISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNIDSILSPF 315

Query: 328 GPQVALAAFLLH----ASGFFF-GYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQH 382
           G  +       H     +G+FF G+  ++   +  A  RTIS E GMQ+S+L + LA++ 
Sbjct: 316 GATILFLVITFHLLAFVAGYFFTGFFFSKAPDVK-ALQRTISYETGMQSSLLALALATKF 374

Query: 383 FGSPMAAVPCAVSSVCHSIFGSVLAGIWR 411
           F  P+  VP A+S+V  S+ G  L  IW+
Sbjct: 375 FQDPLVGVPPAISTVVMSLMGVSLVTIWK 403

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 10/298 (3%)

Query: 129 LLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMP 188
           +L LV P SF W   ++    L   M  +G+  ++ D   A+  P  I +G+V Q+ + P
Sbjct: 104 ILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKP 163

Query: 189 ISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTL 243
             GFL   L     NLP+   AG++LV C  G   SN  T++   ++A LS++MT+ ST 
Sbjct: 164 FLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTA 223

Query: 244 SAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPP 303
           +AV +TP L+  L G+ + VD  G+  S +Q+V+ P+  G  LN+Y   L   + P +PP
Sbjct: 224 TAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPP 283

Query: 304 IAVGTVAILCGNAIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLA----RMLGIDVA 358
           ++V   A+  G+ +A +  A+L+  G    L  F  H S F  GY LA    R      A
Sbjct: 284 LSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKA 343

Query: 359 SCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
             RT+S E GMQ+S+L + LA++ F  P+  VP A+S V  S+ G  L  +W + T +
Sbjct: 344 LQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTKE 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 10/298 (3%)

Query: 129 LLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMP 188
           +L LV P SF W   ++    L   M  +G+  ++ D   A+  P  I +G+V Q+ + P
Sbjct: 104 ILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKP 163

Query: 189 ISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTL 243
             GFL   L     NLP+   AG++LV C  G   SN  T++   ++A LS++MT+ ST 
Sbjct: 164 FLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTA 223

Query: 244 SAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPP 303
           +AV +TP L+  L G+ + VD  G+  S +Q+V+ P+  G  LN+Y   L   + P +PP
Sbjct: 224 TAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPP 283

Query: 304 IAVGTVAILCGNAIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLA----RMLGIDVA 358
           ++V   A+  G+ +A +  A+L+  G    L  F  H S F  GY LA    R      A
Sbjct: 284 LSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKA 343

Query: 359 SCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
             RT+S E GMQ+S+L + LA++ F  P+  VP A+S V  S+ G  L  +W + T +
Sbjct: 344 LQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTKE 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  161 bits (408), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 176/338 (52%), Gaps = 19/338 (5%)

Query: 76  ENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKP 135
            + N  L +F    CG +  T  A++S           +  S   P  V+L  +  L  P
Sbjct: 86  RDGNMSLLSF----CGGTDVTEKADSS-----------QFWSALLPFVVALTAVAALSYP 130

Query: 136 SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS 195
            SF WV        L   ML +G+ L++DD   A   P  +  GFV QY + P+ G LV+
Sbjct: 131 PSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLLGVLVA 190

Query: 196 KLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAK 255
               +P  + AG IL  C  G   S+  + +++ +VA+S+L+T+++T+++V+ TP L+  
Sbjct: 191 NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIASVIFTPLLSGL 250

Query: 256 LAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGN 315
           L G  V VDA+ +  S LQVVL+P+  G  LN Y   +V  + P+MP +A+   ++  G+
Sbjct: 251 LIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVAMVCTSLCIGS 310

Query: 316 AIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLARMLGI--DVASCRTISIEVGMQNS 372
            ++ + S IL++ G  + +     HA  F  GY  +++ G+  +    RTIS+  GMQ+S
Sbjct: 311 PLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSRTISLCTGMQSS 370

Query: 373 VLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIW 410
            L  +LASQ  GS   AVP A S V  +I G  LA  W
Sbjct: 371 TLAGLLASQFLGSSQ-AVPAACSVVVMAIMGLCLASFW 407

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
255580851	404	sodium-bile acid cotransporter, putative	0.862	0.888	0.749	1e-162
449456553	414	PREDICTED: probable sodium/metabolite co	0.834	0.838	0.792	1e-157
18412023	401	Sodium bile acid symporter-like protein	0.901	0.935	0.711	1e-154
225461816	420	PREDICTED: uncharacterized sodium-depend	0.980	0.971	0.698	1e-152
297842635	399	bile acid:sodium symporter family protei	0.884	0.922	0.708	1e-150
302142806	420	unnamed protein product [Vitis vinifera]	0.980	0.971	0.671	1e-144
356549606	415	PREDICTED: uncharacterized sodium-depend	0.930	0.932	0.613	1e-135
147855784	791	hypothetical protein VITISV_026295 [Viti	0.980	0.515	0.611	1e-133
356542351	323	PREDICTED: uncharacterized sodium-depend	0.762	0.981	0.728	1e-130
224119014	267	bile acid:Na+ symporter family protein [	0.629	0.981	0.877	1e-127

>gi|255580851|ref|XP_002531245.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223529164|gb|EEF31142.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/387 (74%), Positives = 323/387 (83%), Gaps = 28/387 (7%)

Query: 29  TQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENTNFRLTNFGPL 88
           ++LQL+S  I ++ S    IL S ++  ++L                            L
Sbjct: 41  SKLQLQSNQIQAAPSKPNWILLSATKRAAQL----------------------------L 72

Query: 89  HCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTII 148
           HCGISSN   AN  +SFR+WI +IGE ISTAFP+WVSLGC+L L+KP+SFNWV PKWTI+
Sbjct: 73  HCGISSNDLSANTDKSFRDWIVVIGEAISTAFPLWVSLGCILALIKPTSFNWVTPKWTIL 132

Query: 149 GLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGL 208
           G++LTMLGMGMTL+ DDL+ ALAMPKEI SGFVLQYSVMP+SGFLVSK+LNLPSHYAAGL
Sbjct: 133 GISLTMLGMGMTLSFDDLKAALAMPKEIFSGFVLQYSVMPLSGFLVSKILNLPSHYAAGL 192

Query: 209 ILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL 268
           ILVGCCPGGTASNIVTYIARGNVALSVLMTAASTL+AVVMTPFLTAKLAGQYVAVDA+GL
Sbjct: 193 ILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLTAVVMTPFLTAKLAGQYVAVDAVGL 252

Query: 269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSG 328
            MSTLQVVLLPVL GAFLNQYF  LVKFVSP+MPPIAVGTVAILCGNAIAQSASAIL SG
Sbjct: 253 LMSTLQVVLLPVLAGAFLNQYFQGLVKFVSPVMPPIAVGTVAILCGNAIAQSASAILMSG 312

Query: 329 PQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMA 388
            QV LAA LLHASGFFFGY LARMLG+DVAS RTISIEVGMQNSVLGVVLA+QHFG+P+ 
Sbjct: 313 QQVVLAASLLHASGFFFGYTLARMLGLDVASSRTISIEVGMQNSVLGVVLATQHFGNPLT 372

Query: 389 AVPCAVSSVCHSIFGSVLAGIWRRSTP 415
           AVPCAVSSVCHS+FGS+LAG+WRRS P
Sbjct: 373 AVPCAVSSVCHSVFGSLLAGVWRRSLP 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456553|ref|XP_004146013.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus] gi|449503646|ref|XP_004162106.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/356 (79%), Positives = 312/356 (87%), Gaps = 9/356 (2%)

Query: 62  KPIWNSPITHPRNPENTNFRLTNFG----PLHCGISSNTADANNSRSFREWIELIGELIS 117
            PIWN    +P     T  R  +FG    PL C  SSN       RS  +WIELIGE +S
Sbjct: 62  DPIWNG---NPFVCSQTKRR--DFGLLVPPLRCEPSSNGNSVQGERSLMQWIELIGEALS 116

Query: 118 TAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEII 177
           TAFP+WV+LGC+LGL++P+S+ WVQP+WT++G+TLTMLGMGMTLTLDDLRGALAMPKE+I
Sbjct: 117 TAFPVWVALGCVLGLLRPASYAWVQPRWTVLGITLTMLGMGMTLTLDDLRGALAMPKELI 176

Query: 178 SGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM 237
           SGFVLQYSVMPISGFLVSKLLNLPS+YAAGLILVGCCPGGTASNIVTYIARGNVALSVLM
Sbjct: 177 SGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM 236

Query: 238 TAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 297
           TA ST++AV+MTPFLTAKLAGQ+VAVDA GL MSTLQ+VLLPVLGGAFLNQYFH LV+FV
Sbjct: 237 TATSTMAAVIMTPFLTAKLAGQFVAVDAAGLLMSTLQIVLLPVLGGAFLNQYFHGLVRFV 296

Query: 298 SPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDV 357
           SP MPPIAVGTVAILCG+AIAQS+SAI  SG QV LAA LLHASGFFFGYVLAR+LGID+
Sbjct: 297 SPFMPPIAVGTVAILCGHAIAQSSSAIRMSGQQVVLAAALLHASGFFFGYVLARLLGIDI 356

Query: 358 ASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRS 413
           AS RTISIEVGMQNSVLGVVLASQHFG+P+ AVPCAVSSVCHSIFGSVLAGIWR+S
Sbjct: 357 ASSRTISIEVGMQNSVLGVVLASQHFGNPLTAVPCAVSSVCHSIFGSVLAGIWRQS 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412023|ref|NP_565182.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana] gi|75163651|sp|Q93YR2.1|BASS1_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS1, chloroplastic; AltName: Full=Bile acid transporter 2; AltName: Full=Bile acid-sodium symporter family protein 1; Flags: Precursor gi|16648877|gb|AAL24290.1| Unknown protein [Arabidopsis thaliana] gi|21593677|gb|AAM65644.1| unknown [Arabidopsis thaliana] gi|23197632|gb|AAN15343.1| Unknown protein [Arabidopsis thaliana] gi|332198000|gb|AEE36121.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/398 (71%), Positives = 320/398 (80%), Gaps = 23/398 (5%)

Query: 22  SSHRLTRTQLQLRSQS---ISSSKSSDQLILRSQSQFQSRLHVKPIWNSPITHPRNPENT 78
           S H+   T L LR+ S   +S S SS ++ L++QS                T P +   +
Sbjct: 20  SLHKSRLTPLHLRTISCSRLSYSPSSREISLKTQS----------------TVPISCRRS 63

Query: 79  NFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSF 138
            F   +F P  CGISSN       +SF EW+E +GE +STAFPIWVSLGCLLGL++PS+F
Sbjct: 64  RF---DFVP-RCGISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTF 119

Query: 139 NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198
           NWV P WTI+GLT+TMLGMGMTLTLDDLRGAL+MPKE+ +GF+LQYSVMP+S F VSKLL
Sbjct: 120 NWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLL 179

Query: 199 NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAG 258
           NLP HYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAST+SAV+MTP LTAKLA 
Sbjct: 180 NLPPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAK 239

Query: 259 QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIA 318
           QY+ VDA+GL MSTLQVVLLPVL GAFLNQYF  LVKFVSP+MPPIAVGTVAILCG AI 
Sbjct: 240 QYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIG 299

Query: 319 QSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVL 378
           Q+ASAIL SG QV LA+ LLH SGF FGY+ +R+LGIDVAS RTISIEVGMQNSVLGVVL
Sbjct: 300 QNASAILMSGKQVVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNSVLGVVL 359

Query: 379 ASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
           A+QHFG+P+ AVPCAVSSVCHSI GSVLAGIWRRS PK
Sbjct: 360 ATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSAPK 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461816|ref|XP_002283695.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/414 (69%), Positives = 335/414 (80%), Gaps = 6/414 (1%)

Query: 4   SIPCSNTRLNFEPYTTHISSHR-LTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVK 62
           S P +   LNF P     ++H    ++ L   S    SS SS QL L S SQ     + +
Sbjct: 6   SFPHARRGLNFAPKPNPTTTHPPFPKSPLLFFSNPTDSSSSSHQLRLTSLSQPHPPRN-E 64

Query: 63  PIWNSPITHPRNPENTNFRLTNF-GPLHCGISSNTADANNSRSFREWIELIGELISTAFP 121
           P++ +P         T  RL +F  PLH  I  N   ++ SRSFR WIE++GE +STAFP
Sbjct: 65  PLFTTPTESISTRRRT--RLVSFVAPLHSRIPLN-GKSHGSRSFRGWIEVVGEALSTAFP 121

Query: 122 IWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFV 181
           +WV+LGCLLGL++PSSFNWVQPKWT++G+T+TMLGMGMTLT DDL  ALAMPKE+++GFV
Sbjct: 122 VWVALGCLLGLIRPSSFNWVQPKWTVLGITVTMLGMGMTLTFDDLCKALAMPKELLAGFV 181

Query: 182 LQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAS 241
           LQY+VMP+ GF VSKLL LPS+YAAGLILVGCCP GT+SNIVTYIARGNVALSVLMTAAS
Sbjct: 182 LQYTVMPLLGFAVSKLLKLPSYYAAGLILVGCCPCGTSSNIVTYIARGNVALSVLMTAAS 241

Query: 242 TLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLM 301
           TLSAVVMTPFLTAKLAGQ+VAVDA+GL MSTLQ+VLLPVLGGAFLNQYF  LVKFVSP+M
Sbjct: 242 TLSAVVMTPFLTAKLAGQFVAVDAVGLLMSTLQIVLLPVLGGAFLNQYFQGLVKFVSPVM 301

Query: 302 PPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCR 361
           P IAV TVA+LCGNAIAQ+ASAIL SG QV LAA LLHASGFFFGY+L+R+LG+DV+S R
Sbjct: 302 PTIAVVTVAVLCGNAIAQNASAILMSGRQVVLAAALLHASGFFFGYILSRILGLDVSSSR 361

Query: 362 TISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
           TISIEV MQNSVLGVVLA+QHFG+P+ AVPCAVSSVCHS+FGSVLAGIWRRS P
Sbjct: 362 TISIEVSMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSVFGSVLAGIWRRSPP 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842635|ref|XP_002889199.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297335040|gb|EFH65458.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/381 (70%), Positives = 309/381 (81%), Gaps = 13/381 (3%)

Query: 49  LRSQSQFQSRL---HVKPIWNSPITHPRNPENTNFRLTNFGPLHC----------GISSN 95
           L+S S  +S+L   H++ I  S +++  +    + +  +  P+ C          GISSN
Sbjct: 15  LKSNSLHKSKLTPLHLRTISFSRLSYSSSSREISLKTQSTVPISCRRRFDFVPRSGISSN 74

Query: 96  TADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTML 155
                  +SF EW+E +GE +STAFPIWVSLGCLLGL++PS+FNWV P WTI GLT+TML
Sbjct: 75  DLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVTPNWTIAGLTITML 134

Query: 156 GMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCP 215
           GMGMTLT DDLRGA +MPKE+ +GFVLQYSVMP+S F VSKLLNLP HYAAGLILVGCCP
Sbjct: 135 GMGMTLTFDDLRGAFSMPKELFAGFVLQYSVMPLSAFFVSKLLNLPPHYAAGLILVGCCP 194

Query: 216 GGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQV 275
           GGTASNIVTYIARGNVALSVLMTAAST+SAV+MTP LTAKLA QY+ VDA+GL MSTLQV
Sbjct: 195 GGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQV 254

Query: 276 VLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAA 335
           VLLPVL GAFLNQYF  LVKFVSP+MPP+AVGTVAILCG AI Q+ASAIL SG QV LA+
Sbjct: 255 VLLPVLAGAFLNQYFQKLVKFVSPVMPPVAVGTVAILCGYAIGQNASAILRSGKQVVLAS 314

Query: 336 FLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVS 395
            LLH SGF FGY+ +R+LGIDVAS RTISIEVGMQNSVLGVVLA+QHFG+P+ AVPCAVS
Sbjct: 315 CLLHISGFLFGYLFSRLLGIDVASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVS 374

Query: 396 SVCHSIFGSVLAGIWRRSTPK 416
           SVCHSI GS LAGIWRRS PK
Sbjct: 375 SVCHSILGSALAGIWRRSAPK 395

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142806|emb|CBI20101.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/414 (67%), Positives = 325/414 (78%), Gaps = 6/414 (1%)

Query: 4   SIPCSNTRLNFEPYTTHISSHR-LTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVK 62
           S P +   LNF P     ++H    ++ L   S    SS SS QL L S SQ     + +
Sbjct: 6   SFPHARRGLNFAPKPNPTTTHPPFPKSPLLFFSNPTDSSSSSHQLRLTSLSQPHPPRN-E 64

Query: 63  PIWNSPITHPRNPENTNFRLTNF-GPLHCGISSNTADANNSRSFREWIELIGELISTAFP 121
           P++ +P         T  RL +F  PLH  I  N   ++ SRSFR WIE++GE +STAFP
Sbjct: 65  PLFTTPTESISTRRRT--RLVSFVAPLHSRIPLN-GKSHGSRSFRGWIEVVGEALSTAFP 121

Query: 122 IWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFV 181
           +WV+LGCLLGL++PSSFNWVQPKWT++G+T+TMLGMGMTLT DDL  ALAMPKE+++GFV
Sbjct: 122 VWVALGCLLGLIRPSSFNWVQPKWTVLGITVTMLGMGMTLTFDDLCKALAMPKELLAGFV 181

Query: 182 LQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAS 241
           LQY+VMP+ GF VSKLL LPS+YAAGLILVGCCP GT+SNIVTYIARGNVALSVLMTAAS
Sbjct: 182 LQYTVMPLLGFAVSKLLKLPSYYAAGLILVGCCPCGTSSNIVTYIARGNVALSVLMTAAS 241

Query: 242 TLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLM 301
           TLSAV +TPFLTAKLAGQ+VAVDA+GL +STLQVVLLPVLGGAFLNQYF  LVK VSP+M
Sbjct: 242 TLSAVAITPFLTAKLAGQFVAVDAVGLLVSTLQVVLLPVLGGAFLNQYFQRLVKLVSPVM 301

Query: 302 PPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCR 361
           P IAV TVA LCG AIAQSASAIL SG QV LAA LLH  GFFFGY+L+RMLG+DV+S R
Sbjct: 302 PTIAVVTVATLCGKAIAQSASAILASGQQVVLAAALLHTLGFFFGYILSRMLGLDVSSSR 361

Query: 362 TISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
           +IS EV ++NSVLGVVLASQH G+P+ AVPCA+SSVC SIFGSVLAGIWR + P
Sbjct: 362 SISFEVCVKNSVLGVVLASQHLGNPLTAVPCAISSVCSSIFGSVLAGIWRHTPP 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549606|ref|XP_003543183.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/414 (61%), Positives = 313/414 (75%), Gaps = 27/414 (6%)

Query: 8   SNTRLNFEPYTTHISS------HRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHV 61
           S++  NF P T  +        +  T TQ+          KS+ ++ LR  SQ Q     
Sbjct: 22  SHSHTNFVPTTNSVPKTITPKPNHFTSTQI----------KSTYRITLRCNSQPQ----- 66

Query: 62  KPIWNSPITHPRNPENTNFRLTNFGPLHCGISSNTADANNSRSFREWIELIGELISTAFP 121
            P+ N  +   ++P  +    +N  PL CGISSN   AN  RS  EW+ L GE++ST FP
Sbjct: 67  -PLPN--LFASKSPRVSG---SNVAPLRCGISSNEYSANEGRSVGEWLVLAGEVLSTGFP 120

Query: 122 IWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFV 181
           +WV++  +LGL+KPS FNWV PK +I+GL + MLGMGMTLTLDDLRG LAMPKE++SGF+
Sbjct: 121 LWVTIASVLGLMKPSYFNWVTPKLSIMGLNIIMLGMGMTLTLDDLRGVLAMPKEVLSGFL 180

Query: 182 LQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAS 241
           +QYSVMP+SGFL+SKLLNLPSH AAG+IL+GCCPGGTASNI+TY+AR NVALSV+MT AS
Sbjct: 181 IQYSVMPLSGFLISKLLNLPSHSAAGIILLGCCPGGTASNIITYLARANVALSVIMTTAS 240

Query: 242 TLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLM 301
           T+SA++MTP LTAKLAG+YVAVDA GL +STLQVVL+PVL GAFLNQ+F  +VKFVSPLM
Sbjct: 241 TISAMIMTPLLTAKLAGKYVAVDAPGLLISTLQVVLVPVLAGAFLNQFFQPIVKFVSPLM 300

Query: 302 PPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCR 361
           PPIAV TVAILCGNAI QS+SAIL SG QV LA FLL ASGFFFGY+ AR+L +DV+S R
Sbjct: 301 PPIAVITVAILCGNAIGQSSSAILASGGQVILATFLLQASGFFFGYLFARLLRLDVSSSR 360

Query: 362 TISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
           TIS +VGM+N VL +VLA++HFG P++AVP A++ V  SI GS+LAGIWRR  P
Sbjct: 361 TISSQVGMKNCVLQIVLATKHFGDPLSAVPGALAIVNQSIIGSILAGIWRRIVP 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855784|emb|CAN78610.1| hypothetical protein VITISV_026295 [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/438 (61%), Positives = 315/438 (71%), Gaps = 30/438 (6%)

Query: 4   SIPCSNTRLNFEPYTTHISSHR-LTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVK 62
           S P +   LNF P     ++H    ++ L   S    SS SS QL L S SQ     + +
Sbjct: 353 SFPHARRGLNFAPKPNPTTTHPPFPKSPLLFFSNPTDSSSSSHQLRLTSLSQPHPPRN-E 411

Query: 63  PIWNSPITHPRNPENTNFRLTNF-GPLHCGISSNTADANNSRSFREWIELIGELISTAFP 121
           P++ +P         T  RL +F  PLH  I  N   ++ SRSFR WIE++GE +STAFP
Sbjct: 412 PLFTTPTESISTRRRT--RLVSFVAPLHSRIPLN-GKSHGSRSFRGWIEVVGEALSTAFP 468

Query: 122 IWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFV 181
           +WV+LGCLLGL++PSSFNWVQPKWT++G+T+TMLGMGMTLT DDL  ALAMPKE+++GFV
Sbjct: 469 VWVALGCLLGLIRPSSFNWVQPKWTVLGITVTMLGMGMTLTFDDLCKALAMPKELLAGFV 528

Query: 182 LQYSVMPISGFLVSKLLNLPSHYAAGLIL------------VGCCPGG------------ 217
           LQY+VMP+ GF VSKLL LPS+YAAGLIL              C P              
Sbjct: 529 LQYTVMPLLGFAVSKLLKLPSYYAAGLILELQVTSSHTLHGTKCAPSSIIITVFVFATLE 588

Query: 218 TASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVL 277
            A  I  +  RGNVALSVLMTAASTLSAV +TPFLTAKLAGQ+VAVDA+GL +STLQVVL
Sbjct: 589 KAQLIHVFSIRGNVALSVLMTAASTLSAVAITPFLTAKLAGQFVAVDAVGLLVSTLQVVL 648

Query: 278 LPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFL 337
           LPVLGGAFLNQYF  LVK VSP+MP IAV TVA LCG AIAQSASAIL SG QV LAA L
Sbjct: 649 LPVLGGAFLNQYFQRLVKLVSPVMPTIAVVTVATLCGKAIAQSASAILASGQQVVLAAAL 708

Query: 338 LHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSV 397
           LH  GFFFGY+L+RMLG+DV+S R+IS EVG++NSVLGVVLASQH G+P+ AVPCA+SSV
Sbjct: 709 LHTLGFFFGYILSRMLGLDVSSSRSISFEVGVKNSVLGVVLASQHLGNPLTAVPCAISSV 768

Query: 398 CHSIFGSVLAGIWRRSTP 415
           C SIFGSVLAGIWR + P
Sbjct: 769 CSSIFGSVLAGIWRHTPP 786

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542351|ref|XP_003539630.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Glycine max]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/317 (72%), Positives = 268/317 (84%)

Query: 99  ANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMG 158
            N  RS REW+ L GE +S AFP+WVS+GC+LGL+KP+ FNWV PK TI GL + MLGMG
Sbjct: 4   GNEVRSVREWLVLAGEFLSMAFPLWVSIGCVLGLMKPNCFNWVTPKVTIRGLNIIMLGMG 63

Query: 159 MTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGT 218
           MTLTLDDLRGALAMPK+++ GFVLQYSVMP+SGFL+S LLNL  H+AAGLIL+GC PGGT
Sbjct: 64  MTLTLDDLRGALAMPKQVLYGFVLQYSVMPLSGFLISTLLNLAPHFAAGLILIGCSPGGT 123

Query: 219 ASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLL 278
           ASNI+TY++RGNVALSV+MT ASTL+A +MTPFLTA LAG+YVAVDA GL +STLQVVL 
Sbjct: 124 ASNIITYLSRGNVALSVIMTTASTLTATIMTPFLTATLAGKYVAVDASGLLISTLQVVLF 183

Query: 279 PVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLL 338
           PVL GAFLNQ+F   VK VSPLMPPIAV TVAILCGN+IAQS+SAIL  G QV LA FLL
Sbjct: 184 PVLAGAFLNQFFKPFVKLVSPLMPPIAVTTVAILCGNSIAQSSSAILVCGGQVILATFLL 243

Query: 339 HASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVC 398
           HASGFFFGY+  R+LG+DV+S RTIS +VGM+NSVLG+VLA++HFG P+ AVP AVS V 
Sbjct: 244 HASGFFFGYIFGRLLGLDVSSSRTISTQVGMKNSVLGIVLATKHFGDPLTAVPGAVSIVF 303

Query: 399 HSIFGSVLAGIWRRSTP 415
            SI GS+LAGIWR S P
Sbjct: 304 QSIIGSILAGIWRDSMP 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119014|ref|XP_002331304.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222873887|gb|EEF11018.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/262 (87%), Positives = 246/262 (93%)

Query: 154 MLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGC 213
           MLGMGMTLTLDDL  A AMPKE++SGFVLQYSVMPISGFLVSKLLNLPS+YAAGLILVGC
Sbjct: 1   MLGMGMTLTLDDLSNAFAMPKEVLSGFVLQYSVMPISGFLVSKLLNLPSYYAAGLILVGC 60

Query: 214 CPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTL 273
           CPGGTASNIVTYIARGNVALSVLMTAAST ++VVMTPFLTAKLAGQYVAVDA GL +ST+
Sbjct: 61  CPGGTASNIVTYIARGNVALSVLMTAASTFASVVMTPFLTAKLAGQYVAVDATGLLVSTM 120

Query: 274 QVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVAL 333
           QVVLLPVL GAFLNQYF SLVK VSPLMPPIAVGTVA+LCGNAIAQS+SAIL SG QV L
Sbjct: 121 QVVLLPVLVGAFLNQYFQSLVKIVSPLMPPIAVGTVAVLCGNAIAQSSSAILMSGRQVVL 180

Query: 334 AAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCA 393
           AAFLLHA GFFFGY+L+RMLG+DVAS RTISIEVGMQNSVLGVVLA++HFG+P+ AVPCA
Sbjct: 181 AAFLLHACGFFFGYLLSRMLGLDVASSRTISIEVGMQNSVLGVVLATKHFGNPLTAVPCA 240

Query: 394 VSSVCHSIFGSVLAGIWRRSTP 415
           VSSVCHSIFGSVLAGIWRRS P
Sbjct: 241 VSSVCHSIFGSVLAGIWRRSVP 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.798	0.827	0.750	5e-131
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.764	0.777	0.429	1.4e-64
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.728	0.940	0.354	3.2e-49
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.718	0.970	0.355	8.5e-49
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.718	0.970	0.355	8.5e-49
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.754	0.771	0.306	3.3e-40
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.704	0.679	0.336	1.6e-38
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.711	0.723	0.320	5.5e-38
UNIPROTKB|E1BSN2	359	SLC10A2 "Uncharacterized prote	0.545	0.632	0.322	1.8e-25
ZFIN|ZDB-GENE-041001-190	343	slc10a1 "solute carrier family	0.485	0.588	0.317	2.7e-25

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 250/333 (75%), Positives = 276/333 (82%)

Query:    84 NFGPLHCGISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQP 143
             +F P  CGISSN       +SF EW+E +GE +STAFPIWVSLGCLLGL++PS+FNWV P
Sbjct:    66 DFVP-RCGISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVTP 124

Query:   144 KWXXXXXXXXXXXXXXXXXXDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSH 203
              W                  DDLRGAL+MPKE+ +GF+LQYSVMP+S F VSKLLNLP H
Sbjct:   125 NWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPH 184

Query:   204 YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAV 263
             YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAST+SAV+MTP LTAKLA QY+ V
Sbjct:   185 YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITV 244

Query:   264 DAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASA 323
             DA+GL MSTLQVVLLPVL GAFLNQYF  LVKFVSP+MPPIAVGTVAILCG AI Q+ASA
Sbjct:   245 DALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASA 304

Query:   324 ILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHF 383
             IL SG QV LA+ LLH SGF FGY+ +R+LGIDVAS RTISIEVGMQNSVLGVVLA+QHF
Sbjct:   305 ILMSGKQVVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNSVLGVVLATQHF 364

Query:   384 GSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTPK 416
             G+P+ AVPCAVSSVCHSI GSVLAGIWRRS PK
Sbjct:   365 GNPLTAVPCAVSSVCHSILGSVLAGIWRRSAPK 397

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 138/321 (42%), Positives = 191/321 (59%)

Query:    91 GISSNTADANNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXX 150
             G+S +  ++   +   ++ ++I EL++T FP+WV LG L+G+ KPS   W++        
Sbjct:    78 GVSGDLPEST-PKELSQYEKII-ELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGL 135

Query:   151 XXXXXXXXXXXXXDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLIL 210
                          +D R  L  P  +  GF+ QY + PI GFL++  L L +  A GLIL
Sbjct:   136 GFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLIL 195

Query:   211 VGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFM 270
             V CCPGG ASN+ TYI++GNVALSVLMT  ST+ A++MTP LT  LAGQ V VDA GL +
Sbjct:   196 VSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAL 255

Query:   271 STLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQ 330
             ST QVVL+P + G   N++F      +  + P I V    +LC + I Q A  + T G Q
Sbjct:   256 STFQVVLVPTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQ 315

Query:   331 VALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAV 390
             + L   LLHA+ F  GY +++      ++ RTISIE GMQ+S LG +LA +HF +P+ AV
Sbjct:   316 LILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAV 374

Query:   391 PCAVSSVCHSIFGSVLAGIWR 411
             P AVS VC ++ GS LA  WR
Sbjct:   375 PSAVSVVCMALGGSGLAVFWR 395

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 108/305 (35%), Positives = 177/305 (58%)

Query:   109 IELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXDDLRG 168
             +E I  +    F  WV     +    P+ F  +   +                   D + 
Sbjct:     4 LEAISNIAGKYFAFWVICIATIAYFIPAPFLGLN-SYITILLGVVMFGMGLTLKAVDFKI 62

Query:   169 ALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIAR 228
                 P  +I G   Q+ +MP+  ++++ ++NLP+  AAGL+L+G  PGGTASN++ Y+A+
Sbjct:    63 IATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYLAK 122

Query:   229 GNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQ 288
             GN+ALS+ MT+ STL A + TP +   LAGQ++ V+ M +F+S +QV+++P++ G  + +
Sbjct:   123 GNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVVKK 182

Query:   289 YFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV 348
             +F   V     ++P I+V  + I+    ++ + S+I +SG  + +A  L +A GF  GY+
Sbjct:   183 FFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLILIAVMLHNAFGFLLGYI 242

Query:   349 LARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
              A +L +D  + R ISIEVGMQNS LGV LA+ HFG P AA+P  +++V H+I G +LA 
Sbjct:   243 TAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFG-PAAALPSVLAAVWHNIAGPILAT 301

Query:   409 IWRRS 413
             IW ++
Sbjct:   302 IWSKN 306

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 107/301 (35%), Positives = 167/301 (55%)

Query:   116 ISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXDDLRGALAMPKE 175
             ++  FP++  LG +   + P+ F  V                       D   A    + 
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFV-VFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRA 62

Query:   176 IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSV 235
             +I+G +LQ+++MP+S   +S LL L      G++LVG   GGTASN++ Y+A+G+VALS+
Sbjct:    63 VITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSI 122

Query:   236 LMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVK 295
              MTA STL+ VV+TP +   L G+ VA+  M + +S +++VL+PV  G  LN +F   V 
Sbjct:   123 TMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVA 182

Query:   296 FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGI 355
              +SP +P I++  + +     +A +A      GP + LA FL +  G   GY+  R+LG 
Sbjct:   183 KLSPALPLISIVAIVMAISIIVALNAGQFAQVGPVILLAVFLHNGLGLTLGYLCCRLLGF 242

Query:   356 DVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
                 C+TISIEVG+QNS L   L  + F SP++A+P A+ S+ H++ G++LAG W     
Sbjct:   243 SHTVCKTISIEVGLQNSGLATALCIKFF-SPISAIPSAIFSIWHNLSGAMLAGYWASRVQ 301

Query:   416 K 416
             K
Sbjct:   302 K 302

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 107/301 (35%), Positives = 167/301 (55%)

Query:   116 ISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXDDLRGALAMPKE 175
             ++  FP++  LG +   + P+ F  V                       D   A    + 
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFV-VFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRA 62

Query:   176 IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSV 235
             +I+G +LQ+++MP+S   +S LL L      G++LVG   GGTASN++ Y+A+G+VALS+
Sbjct:    63 VITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSI 122

Query:   236 LMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVK 295
              MTA STL+ VV+TP +   L G+ VA+  M + +S +++VL+PV  G  LN +F   V 
Sbjct:   123 TMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVA 182

Query:   296 FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGI 355
              +SP +P I++  + +     +A +A      GP + LA FL +  G   GY+  R+LG 
Sbjct:   183 KLSPALPLISIVAIVMAISIIVALNAGQFAQVGPVILLAVFLHNGLGLTLGYLCCRLLGF 242

Query:   356 DVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
                 C+TISIEVG+QNS L   L  + F SP++A+P A+ S+ H++ G++LAG W     
Sbjct:   243 SHTVCKTISIEVGLQNSGLATALCIKFF-SPISAIPSAIFSIWHNLSGAMLAGYWASRVQ 301

Query:   416 K 416
             K
Sbjct:   302 K 302

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 101/329 (30%), Positives = 170/329 (51%)

Query:    97 ADANNSRSFREWIELIGELISTAF---PIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXX 153
             ++++++  + + +  I E +  A+   P  + L  +L LV P SF W +P++        
Sbjct:    76 SESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYFVPGLGFM 135

Query:   154 XXXXXXXXXXDDLRGALAMPKEIISGFVLQYSVMPISGFLVS----KLLNLPSHYAAGLI 209
                        D   AL  P  I +G++ QY + P+ G++       L NLP+   AG++
Sbjct:   136 MFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIM 195

Query:   210 LVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL 268
             LV C  G   SN  T++   ++A LS++MT+ ST +AV++TP L+  L G+ + VD  G+
Sbjct:   196 LVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGM 255

Query:   269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTS- 327
               S LQVV+ P+  G  LN+ F  L   + P +P + V  ++   G  +A +  +IL+  
Sbjct:   256 ISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNIDSILSPF 315

Query:   328 GPQVALAAFLLH----ASGFFF-GYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQH 382
             G  +       H     +G+FF G+  ++   +     RTIS E GMQ+S+L + LA++ 
Sbjct:   316 GATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQ-RTISYETGMQSSLLALALATKF 374

Query:   383 FGSPMAAVPCAVSSVCHSIFGSVLAGIWR 411
             F  P+  VP A+S+V  S+ G  L  IW+
Sbjct:   375 FQDPLVGVPPAISTVVMSLMGVSLVTIWK 403

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 100/297 (33%), Positives = 153/297 (51%)

Query:   117 STAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXDDLRGALAMPKEI 176
             S   P  V+L  +  L  P SF WV                      DD   A   P  +
Sbjct:   112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query:   177 ISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVL 236
               GFV QY + P+ G LV+    +P  + AG IL  C  G   S+  + +++ +VA+S+L
Sbjct:   172 SVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSIL 231

Query:   237 MTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKF 296
             +T+++T+++V+ TP L+  L G  V VDA+ +  S LQVVL+P+  G  LN Y   +V  
Sbjct:   232 LTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTL 291

Query:   297 VSPLMPPIAVGTVAILCGNAIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLARMLGI 355
             + P+MP +A+   ++  G+ ++ + S IL++ G  + +     HA  F  GY  +++ G+
Sbjct:   292 LQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGL 351

Query:   356 --DVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIW 410
               +    RTIS+  GMQ+S L  +LASQ  GS  A VP A S V  +I G  LA  W
Sbjct:   352 RQEEEVSRTISLCTGMQSSTLAGLLASQFLGSSQA-VPAACSVVVMAIMGLCLASFW 407

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 98/306 (32%), Positives = 154/306 (50%)

Query:   117 STAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXDDLRGALAMPKEI 176
             ++  P  V    +L L+ P SF W   ++                   D   A   PK I
Sbjct:    98 NSILPHVVLASTILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAI 157

Query:   177 ISGFVLQYSVMPISGFLVS----KLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVA 232
             + G+V QY V P+ GF+       L  LP+   AG++LV C  G   SN  T++    +A
Sbjct:   158 LLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALA 217

Query:   233 -LSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFH 291
              LS++MT+ ST +AV++TP L+  L G+ + VD  G+  S LQVV+ P+  G  LN+ F 
Sbjct:   218 PLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFP 277

Query:   292 SLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTS-GPQVALAAFLLHASGFFFGYVLA 350
              +   + P +P ++V   A   G  +A + +++++  G  + L   + H S F  GY L 
Sbjct:   278 KVSNAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLT 337

Query:   351 RML---GIDV-ASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVL 406
               +     D  A  RT+S E GMQ+S+L + LA++ F  P+  +P A+S+V  S+ G  L
Sbjct:   338 GSVFRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTL 397

Query:   407 AGIWRR 412
               IW +
Sbjct:   398 VLIWSK 403

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|E1BSN2 SLC10A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 79/245 (32%), Positives = 131/245 (53%)

Query:   173 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVA 232
             P  I  GF+ Q+ +MP++ FL+S   ++    A  ++++GCCPGGTASNI+ Y   G++ 
Sbjct:    75 PWGIFVGFLCQFGIMPLTAFLLSLAFDVHPIQAVVVMIMGCCPGGTASNIIAYWVDGDMD 134

Query:   233 LSVLMTAASTLSAVVMTP---FLTAKLAGQYVAV----DAMGLFMSTLQVVLLPVLGGAF 285
             LS+ MT  STL A+ M P   F+  K+     A+    D++G+   +L  +++PV  G F
Sbjct:   135 LSISMTTCSTLLAMGMMPLCLFVYTKMWTDSDAIVLPYDSIGI---SLVALVVPVSVGVF 191

Query:   286 LNQYFHSLVKF---VSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASG 342
             +N  + S  K    V  +   I +   A++ G  I    S ++T  P++ +   +  A+G
Sbjct:   192 VNHKWPSKAKRILKVGSIAGAILIVITAVVGG--ILYKGSWVIT--PKLWIIGTIFPAAG 247

Query:   343 FFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIF 402
             +  G+ LAR+ G+  + CRT+S+E GMQN+ L   +    F SP          + +SIF
Sbjct:   248 YSLGFFLARLAGLSWSRCRTVSLETGMQNTQLCSTIVQLSF-SPEQLELMFTFPLIYSIF 306

Query:   403 GSVLA 407
               + A
Sbjct:   307 QLLFA 311

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041001-190 slc10a1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 68/214 (31%), Positives = 112/214 (52%)

Query:   166 LRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTY 225
             ++  L  PK ++     QY +MP + F ++KL  L    +  +++ GCCPGG  SNI   
Sbjct:    61 IKDHLMKPKGVVIAVGAQYGIMPFTAFCLAKLFRLSPMESLSVLICGCCPGGNLSNIFAL 120

Query:   226 IARGNVALSVLMTAASTLSAVVMTPFLTAKLA-GQYVAVDAM---GLFMSTLQVVLLPVL 281
               +G++ LS++MTA ST+ A+ M P L    + G    VD +   G+  S + ++L+P  
Sbjct:   121 ALQGDMNLSIVMTACSTVLALAMMPLLLYLYSWGFSNLVDFVPFTGIIFSLI-LILVPCG 179

Query:   282 GGAFLN----QYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFL 337
              G  LN    QY   + +    LM  I+   + +L G A       +L+S  Q+   A L
Sbjct:   180 IGILLNYRVPQYSKIITQAGLTLML-ISCIVIGVLAGVADGGQIFKVLSS--QLVATAAL 236

Query:   338 LHASGFFFGYVLARMLGIDVASCRTISIEVGMQN 371
             +  +G+ FGY+L+ +  ++    RT+S+EVG QN
Sbjct:   237 MPLTGYIFGYILSALFRMNEPCRRTVSMEVGCQN 270

GO:0016020 "membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XVB3	BASS1_ORYSJ	No assigned EC number	0.5931	0.9230	0.9458	yes	no
Q93YR2	BASS1_ARATH	No assigned EC number	0.7110	0.9014	0.9351	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G78560	bile acid-sodium symporter family protein; bile acid-sodium symporter family protein; FUNCTIONS IN- transporter activity, bile acid-sodium symporter activity; INVOLVED IN- sodium ion transport; LOCATED IN- chloroplast, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bile acid-sodium symporter (InterPro-IPR002657); BEST Arabidopsis thaliana protein match is- bile acid-sodium symporter family protein (TAIR-AT2G26900.1); Has 3321 Blast hits to 3315 proteins in 563 species- Archae - 42; Bacteria - 1259; Metazoa - 390; Fungi - 0; [...] (401 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G43100	aconitase C-terminal domain-containing protein; aconitase C-terminal domain-containing protein; [...] (256 aa)							•		0.679
	AT1G31180	3-isopropylmalate dehydrogenase, chloroplast, putative; The AtIMD3 is one out of 3 genes encodi [...] (404 aa)							•		0.567
	CLF	CLF (CURLY LEAF); transcription factor; Similar to the product of the Polycomb-group gene Enhan [...] (902 aa)							•		0.408
	MYB122	MYB122 (MYB DOMAIN PROTEIN 122); DNA binding / transcription factor; Encodes a putative transcr [...] (333 aa)							•		0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	6e-82
TIGR00841	286	TIGR00841, bass, bile acid transporter	7e-71
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	2e-35
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	1e-15
COG0798	342	COG0798, ACR3, Arsenite efflux pump ACR3 and relat	7e-11
TIGR00832	328	TIGR00832, acr3, arsenical-resistance protein	6e-05
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	9e-04

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  254 bits (650), Expect = 6e-82
 Identities = 119/301 (39%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 116 ISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKE 175
               F +WV L   +  + P +F W+      I L L M GMG+TL+ +D    L  P+ 
Sbjct: 11  PFKIFLLWVVLLAAIAPIFPETFGWLGS-AIPIALALIMFGMGLTLSREDFLAGLKHPRL 69

Query: 176 IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSV 235
           ++ G   Q+ +MP+   L++KL  LP   A GL+L+GCCPGG ASN +TY+A+GNVALSV
Sbjct: 70  VLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSV 129

Query: 236 LMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVK 295
             T+ STL    +TP L   LAG  V VD  G+F+S L  VLLP + G  L       V+
Sbjct: 130 CSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVE 189

Query: 296 FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGI 355
            +   +PP++V ++ ++   A + +    + SG  + +A  L +  G   GY  AR+LG 
Sbjct: 190 RLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGF 249

Query: 356 DVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415
           D A   TI+IE GMQN  LG  LA+  FG+P+ A+P A+ SV  ++ G+VLAG++ R   
Sbjct: 250 DKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRIL 309

Query: 416 K 416
           K
Sbjct: 310 K 310

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  224 bits (573), Expect = 7e-71
 Identities = 104/279 (37%), Positives = 157/279 (56%), Gaps = 8/279 (2%)

Query: 138 FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL 197
              +     I+ L L M  MG TL  +D +G L  P  +I G + QY +MP++GFL++K+
Sbjct: 3   STNLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV 61

Query: 198 LNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA 257
             LP   A G+++VGCCPGGTASN+ TY+ +G++ALS+ MT  STL A+ M P L    A
Sbjct: 62  FKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYA 121

Query: 258 GQYV----AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILC 313
             +V     V  +G+ +S L +VL+PV  G  +      + K +  +   I+V  ++++ 
Sbjct: 122 KMWVDGTLVVPYLGIGLS-LVIVLIPVSIGMLVKHKLPQIAKIILKV-GLISVFLLSVII 179

Query: 314 GNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSV 373
                 +   + T GP + L   LL  +GF  GY+LA++ G+  A CRTISIEVGMQNS 
Sbjct: 180 AVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ 239

Query: 374 LGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRR 412
           L   +A   F SP  AVP A+  + +++F    A ++  
Sbjct: 240 LCSTIAQLSF-SPEVAVPSAIFPLIYALFQLAFALLFLI 277

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  128 bits (324), Expect = 2e-35
 Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 7/167 (4%)

Query: 148 IGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS-KLLNLPSHYAA 206
           +GL L M  MG+ +  +D +     PK ++ G +LQ+ +MP+  F+++  LL LP   A 
Sbjct: 2   LGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWFLLRLPPELAV 61

Query: 207 GLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAM 266
           GLILVGC PGG  SN+ TY+A+G+V LSV+M A STL+A ++TP L+  L+G  + V   
Sbjct: 62  GLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGTA 121

Query: 267 ----GLFMSTLQVVLLPVLGGAFLNQYF--HSLVKFVSPLMPPIAVG 307
                L  S L  V++P++ G     +       + + P++PPI++ 
Sbjct: 122 VSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLI 168

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 69/283 (24%), Positives = 107/283 (37%), Gaps = 16/283 (5%)

Query: 145 WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL--NLPS 202
            T   + L     G+ L+ ++L   L   +  +   +  + + P+ G  +S LL   LP 
Sbjct: 32  VTTYAVALIFFLSGLKLSTEELLAGLRNWRLHLFVQLFTFVLFPLLGLGLSPLLPAALPP 91

Query: 203 HYAAGLILVGCCPGGTASNIV-TYIARGNVALSVLMTAASTLSAVVMTPFLTAKL-AGQY 260
               G + +   P   +S++  T  A GNVA +V   + S L  V +TP L   L  G  
Sbjct: 92  ELLLGFLFLAALPTTVSSSVAMTSQAGGNVAAAVCSASISNLLGVFLTPLLVGLLLGGGG 151

Query: 261 VAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQS 320
             VD   +    L  +LLP + G  L   F   V     L+  +   ++ ++   A + +
Sbjct: 152 GGVDLGAVLKKLLLQLLLPFVLGQLLRPLFPKWVARHKKLLKKVDRSSILLIVYTAFSTA 211

Query: 321 -ASAILTSGPQVALAAF-----LLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS-V 373
               I  S     L        LL           AR+LG        I +  G + S  
Sbjct: 212 FVEGIWHSVSHSILLVIFALGLLLLFVVLVLTTFAARLLGFSREDRIAI-LFCGSKKSLA 270

Query: 374 LGVVLASQHFGSP----MAAVPCAVSSVCHSIFGSVLAGIWRR 412
           LGV LAS  FG      +  +P  +      +  SVLA    R
Sbjct: 271 LGVPLASVLFGGAPQLGLILLPLMLYHQIQLMVCSVLAPRLAR 313

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 68/303 (22%), Positives = 121/303 (39%), Gaps = 36/303 (11%)

Query: 121 PIWVSL----GCLLGLVKPSSFNWVQPKWTI--------IGLTLTMLGMGMTLTLDDLRG 168
            +WV L    G LLG+  P     +  K           IGL L M    + +  ++L+ 
Sbjct: 17  TLWVFLAIAIGILLGVHFPGLAQLLG-KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKN 75

Query: 169 ALAMPKEIISGFVLQYSVMPISGFLVSK--LLNLPSHYAAGLILVGCCPGGTASNIV-TY 225
               PK +I    + + + P+  F ++   L + P  Y AGLIL+G  P   A  IV + 
Sbjct: 76  VFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEPE-YRAGLILLGLAPC-IAMVIVWSG 133

Query: 226 IARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY-VAVDAMGLFMSTLQVVLLPVLGGA 284
           +A+G+  L++++ A ++L  +V+   L     G   ++V    +  S L  + +P++ G 
Sbjct: 134 LAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGV 193

Query: 285 FLNQ----------YFHSLVKFVSPLMPPIAVGTVAILC---GNAIAQSASAILTSGPQV 331
                         Y    +  +SP+     + T+ ++    G  I +    IL     +
Sbjct: 194 LTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILL----I 249

Query: 332 ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVP 391
           A+   +     FF  Y +A+ LG+       +       N  L + +A   FG    A  
Sbjct: 250 AIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAAL 309

Query: 392 CAV 394
             V
Sbjct: 310 ATV 312

Length = 342

>gnl|CDD|213563 TIGR00832, acr3, arsenical-resistance protein

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 65/304 (21%), Positives = 115/304 (37%), Gaps = 51/304 (16%)

Query: 121 PIWVSL----GCLLGLVKPSSFNWVQPKWTI--------IGLTLTMLGMGMTLTLDDLRG 168
            +W+ L    G  LG++ PS F  +     +        IGL L M      +    L  
Sbjct: 9   TLWIFLAIAAGVGLGVLFPSVFQALA-ALEVATVSIPIAIGLILMMYPPLAKVDYSALGD 67

Query: 169 ALAMPKEIISGFVLQYSVMPISGFLVSKLL--NLPSHYAAGLILVGCCPGGTASNIV-TY 225
               PK +I    + + + P   FL++ L   +L   Y AGLIL+G      A   V   
Sbjct: 68  VFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE-YIAGLILLGLARC-IAMVFVWNQ 125

Query: 226 IARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQV---------- 275
           +A+G+   ++++ A ++L  V    FL A LA   + V  + L ++ + V          
Sbjct: 126 LAKGDPEYTLVLVAVNSLFQV----FLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVL 181

Query: 276 --VLLPVLGGAFLNQYFHS----------LVKFVSPLMPPIAVGTVAILC---GNAIAQS 320
             + +P++ G     +              +  +SP      + T+ +L    G  I + 
Sbjct: 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIEL 241

Query: 321 ASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLAS 380
              I      +A+   +     FF  + LA+ LG+  +     +      N  L + +A 
Sbjct: 242 PLDIA----LIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297

Query: 381 QHFG 384
             FG
Sbjct: 298 SLFG 301

The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport [Cellular processes, Detoxification, Transport and binding proteins, Anions]. Length = 328

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 150 LTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLI 209
             L ++ +G++L    L+G+   P  I+    L+  + P+   LV+KLL L       L+
Sbjct: 203 SPLALIALGLSLAFLKLKGS--KPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLV 260

Query: 210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY 260
           L+   P    + ++     G+  L+      STL +++  P L   L    
Sbjct: 261 LLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRSL 311

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.96
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.96
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.45
PRK09903	314	putative transporter YfdV; Provisional	99.4
COG0679	311	Predicted permeases [General function prediction o	99.27
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.02
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.92
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.56
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.38
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.1
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.8
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.57
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.55
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.26
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.17
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	97.14
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	97.04
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.72
PRK10669	558	putative cation:proton antiport protein; Provision	96.62
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	96.3
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.12
PRK05326	562	potassium/proton antiporter; Reviewed	96.09
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	96.06
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	96.05
PRK09903	314	putative transporter YfdV; Provisional	95.76
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.74
COG0679	311	Predicted permeases [General function prediction o	95.46
PLN03159	832	cation/H(+) antiporter 15; Provisional	95.31
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	94.01
COG2855	334	Predicted membrane protein [Function unknown]	93.94
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	93.63
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	93.62
PRK10711	231	hypothetical protein; Provisional	93.3
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	93.25
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	93.12
PRK04288	232	antiholin-like protein LrgB; Provisional	93.02
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	92.94
KOG2722	408	consensus Predicted membrane protein [Function unk	92.91
TIGR00698	335	conserved hypothetical integral membrane protein.	91.5
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	91.19
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	91.01
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	90.17
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	90.14
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.36
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	89.36
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	89.35
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	89.2
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	88.97
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	88.4
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.72
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	87.41
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	87.12
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	86.91
PRK03659	601	glutathione-regulated potassium-efflux system prot	86.24
PRK10711	231	hypothetical protein; Provisional	85.23
PRK04288	232	antiholin-like protein LrgB; Provisional	85.17
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	84.95
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	84.39
TIGR00698	335	conserved hypothetical integral membrane protein.	81.33

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=4.5e-53  Score=413.13  Aligned_cols=304  Identities=39%  Similarity=0.651  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898          110 ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI  189 (416)
Q Consensus       110 ~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl  189 (416)
                      +.++++..+.+|+++++...++...|+.+.++..+ .+..+.++||.+|++++.+|+++..+|||.+++++.+||++||+
T Consensus         5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl   83 (319)
T COG0385           5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSA-IPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL   83 (319)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHH-HHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            44445667888999999999999999999998874 46789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHH
Q 014898          190 SGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLF  269 (416)
Q Consensus       190 la~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~  269 (416)
                      +++++++++++||+.+.|+++++|||+|+.||+||+++|||+++|++++.+||+++++++|+++.++.|+.+++|.++++
T Consensus        84 la~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~  163 (319)
T COG0385          84 LALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMF  163 (319)
T ss_pred             HHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 014898          270 MSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL  349 (416)
Q Consensus       270 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~ll  349 (416)
                      +++++.+++|+.+|+++|++.|+++++.++.+++++...++++++..++.+.+.+.+.+..+.+++++++.++|.+||+.
T Consensus       164 ~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~  243 (319)
T COG0385         164 LSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFG  243 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888888777778888999999999999999


Q ss_pred             HHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014898          350 ARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       350 arll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      +|++|+|++|++|+++|+|+||.++|+.+|..+|+||..++|.++|+++|++.+++++.+|+||+
T Consensus       244 ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~  308 (319)
T COG0385         244 ARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI  308 (319)
T ss_pred             HHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999776699999999999999999999999999874

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=4.6e-44  Score=357.26  Aligned_cols=290  Identities=20%  Similarity=0.262  Sum_probs=251.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCccchhhhHH----H---HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHH
Q 014898          112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK----W---TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQY  184 (416)
Q Consensus       112 i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~----l---~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~  184 (416)
                      +.|+...++.+.++++.+.|+..|..+.+....    .   ..+.+.++||++|++++.+|+++.+||||.+..+++.||
T Consensus         4 ~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qf   83 (328)
T TIGR00832         4 LERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINW   83 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHH
Confidence            445666777777788889999999998777532    1   223566899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 014898          185 SVMPISGFLVSKLL-NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAG-----  258 (416)
Q Consensus       185 vl~Plla~~l~~~~-~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g-----  258 (416)
                      +++|+++|++++++ +.+|+++.|+++++|||||.+|++||+++|||+++|+.+|+++|+++++++|+++.++.|     
T Consensus        84 vi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~  163 (328)
T TIGR00832        84 IIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIW  163 (328)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999999985 999999999999999999999999999999999999999999999999999999988865     


Q ss_pred             ---ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhch
Q 014898          259 ---QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHS-----LVK-FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGP  329 (416)
Q Consensus       259 ---~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~-----~~~-~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~  329 (416)
                         +.+++|.++++.+++.++++|+++|+++|++.++     +.+ +..+.++.++.+.+.+++....+.+++.+.+.++
T Consensus       164 ~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~  243 (328)
T TIGR00832       164 LGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPL  243 (328)
T ss_pred             cccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence               4578999999999999999999999999999995     333 6777788888877777777778888888877654


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCc-chHHHHHHHHHHHHH
Q 014898          330 QV---ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSP-MAAVPCAVSSVCHSI  401 (416)
Q Consensus       330 ~i---ll~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p-~~alP~~v~~l~q~i  401 (416)
                      .+   ..+.++++.++|.+||+++|.+|++++|++|+++|+|+||.++|+.+|.++|+++ ..+.+.+...++|..
T Consensus       244 ~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~  319 (328)
T TIGR00832       244 DIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIEVP  319 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehh
Confidence            44   3467789999999999999999999999999999999999999999999999864 455555545555544

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=1.8e-43  Score=347.18  Aligned_cols=271  Identities=38%  Similarity=0.637  Sum_probs=251.5

Q ss_pred             hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhH
Q 014898          140 WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTA  219 (416)
Q Consensus       140 ~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~  219 (416)
                      ++.+...+. ++++||++|++++.+|+++.++|||.+..+++.|++++|+++|++++.++++++++.|+++++|||++.+
T Consensus         5 ~~~~~~~~~-l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~   83 (286)
T TIGR00841         5 NLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTA   83 (286)
T ss_pred             hHHHHHHHH-HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchH
Confidence            344455555 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcee----eechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014898          220 SNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYV----AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVK  295 (416)
Q Consensus       220 s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v----~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~  295 (416)
                      +++||+++|||.++++.+++++|+++++++|+++.++.+..+    ++|.++++.+ +..+++|+.+|+++|++.|++.+
T Consensus        84 s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~  162 (286)
T TIGR00841        84 SNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAK  162 (286)
T ss_pred             HHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999999998865544    4999999999 89999999999999999999988


Q ss_pred             HHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHH
Q 014898          296 FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLG  375 (416)
Q Consensus       296 ~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~La  375 (416)
                      +.++ ++.++.+.+.+++...++.+.+.+.+..+.+.+++.+++.++|.+||+.+|.+|++++|++|+++|+|+||+++|
T Consensus       163 ~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~la  241 (286)
T TIGR00841       163 IILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLC  241 (286)
T ss_pred             HHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHH
Confidence            8888 899998887777777778888888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014898          376 VVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       376 i~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++++.++|+ |..++|.++|.++|++.+.+++.+|+|+.
T Consensus       242 l~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~  279 (286)
T TIGR00841       242 STIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH  279 (286)
T ss_pred             HHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999997 89999999999999999999999998763

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=1.1e-38  Score=316.54  Aligned_cols=295  Identities=24%  Similarity=0.360  Sum_probs=263.1

Q ss_pred             HHHHHHHHHHHHHhhhcCccchh---hh-HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 014898          118 TAFPIWVSLGCLLGLVKPSSFNW---VQ-PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFL  193 (416)
Q Consensus       118 ~~~pl~i~~~~l~gl~~P~~~~~---~~-~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~  193 (416)
                      +||++.+..++++|+..|+....   .. ++.....+++++|..|++++.+|+++..+|||.++.++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999988753   32 245667799999999999999999999999999999999999999999999


Q ss_pred             HHHhcC--CChhHHHHHhHhccCchhhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CceeeechHHHH
Q 014898          194 VSKLLN--LPSHYAAGLILVGCCPGGTASNI-VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA-GQYVAVDAMGLF  269 (416)
Q Consensus       194 l~~~~~--l~~~~~~glvl~~~~P~~~~s~i-~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~-g~~v~i~~~~l~  269 (416)
                      +.++++  .+++.+.|+++++|+|++..|++ ||+++|||.++++..++++|+++++++|+++.++. ++.+++|..+++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~  160 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL  160 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence            999984  78999999999999999988875 89999999999999999999999999999999987 778899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhh--HHHHhhhc----hHHHHHHHHHHHHHH
Q 014898          270 MSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQS--ASAILTSG----PQVALAAFLLHASGF  343 (416)
Q Consensus       270 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~~~----~~ill~~~ll~~~gf  343 (416)
                      .++...+++|+++|+++|++.+++.++.++.++.++...++.+++..++..  ++...+..    ..+...++.++...+
T Consensus       161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888888777654  22222222    223456778888999


Q ss_pred             HHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898          344 FFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGS----PMAAVPCAVSSVCHSIFGSVLAGIWRR  412 (416)
Q Consensus       344 ~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~----p~~alP~~v~~l~q~i~~s~la~~~~r  412 (416)
                      .++|+.+|.+|++++|++|+.|++++||.++|++++...|++    +.+.+|+++||..|++++++++.+|+|
T Consensus       241 ~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r  313 (313)
T PF13593_consen  241 VLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999974    378999999999999999999999987

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-30  Score=254.97  Aligned_cols=306  Identities=20%  Similarity=0.281  Sum_probs=263.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhhh-------HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHH
Q 014898          108 WIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQ-------PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGF  180 (416)
Q Consensus       108 ~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~-------~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l  180 (416)
                      ..+.+.|++..|..+++.+|+.+|..+|+..+.+.       +....+.+.+||+.+-++++.+++++..+++|.+.+.+
T Consensus         8 ~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL   87 (342)
T COG0798           8 KLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSL   87 (342)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHH
Confidence            34555567777878888889999999999443222       23355688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc-CCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014898          181 VLQYSVMPISGFLVSKLL-NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ  259 (416)
Q Consensus       181 ~~~~vl~Plla~~l~~~~-~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~  259 (416)
                      ..|+++-|+++|++++.| +..|++.+|+++.+.+||..++.+|+++++||.++++..+.++.++++++.|.+.+++.|.
T Consensus        88 ~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v  167 (342)
T COG0798          88 FVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGV  167 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999988 6778999999999999999999999999999999999999999999999999999888765


Q ss_pred             e-eeechHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHH
Q 014898          260 Y-VAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSL------VKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVA  332 (416)
Q Consensus       260 ~-v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~------~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~il  332 (416)
                      . +++++++++++++..+.+|+.+|++.|++..++      .++..|.+++++...+.+.+...++.+.+.+.+.++.++
T Consensus       168 ~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~  247 (342)
T COG0798         168 ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDIL  247 (342)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHH
Confidence            4 889999999999999999999999999986553      357888889999988888888888889999998887665


Q ss_pred             HHH---HHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHH
Q 014898          333 LAA---FLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAG  408 (416)
Q Consensus       333 l~~---~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~  408 (416)
                      ..+   .+....-+.++|+++|.+|.+.+|+.+++|+++.+|..+|+++|.+.|+ +..+++..++..+.|.+.--.++.
T Consensus       248 liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvml~lV~  327 (342)
T COG0798         248 LIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVMLGLVK  327 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHHHHHHH
Confidence            443   3444577889999999999999999999999999999999999999998 566777788899999888777766


Q ss_pred             HHhhc
Q 014898          409 IWRRS  413 (416)
Q Consensus       409 ~~~r~  413 (416)
                      .++|.
T Consensus       328 v~~~~  332 (342)
T COG0798         328 VALRI  332 (342)
T ss_pred             HHHHH
Confidence            55543

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-30  Score=259.41  Aligned_cols=276  Identities=40%  Similarity=0.607  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHhhhcC-ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014898          121 PIWVSLGCLLGLVKP-SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLN  199 (416)
Q Consensus       121 pl~i~~~~l~gl~~P-~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~  199 (416)
                      |+......+.....| ..+.|+.+......+...|+++|++++.+++++..+||+.+.+|++.|+++||+.+|.+++.+.
T Consensus        89 p~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~  168 (371)
T KOG2718|consen   89 PLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLL  168 (371)
T ss_pred             hHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhh
Confidence            444444455555666 7788888776677889999999999999999999999999999999999999999999999998


Q ss_pred             CChhHHHHHhHhccCchhhHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHHHHHH
Q 014898          200 LPSHYAAGLILVGCCPGGTASNIV-TYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLL  278 (416)
Q Consensus       200 l~~~~~~glvl~~~~P~~~~s~i~-t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~~vll  278 (416)
                      +|..+++|.+++.|++++..++.. +..-+||+.+++.+|.++|+.+++++|++-.++.++.+..|...+..+.+..+.+
T Consensus       169 lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~  248 (371)
T KOG2718|consen  169 LPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGL  248 (371)
T ss_pred             CCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHH
Confidence            988887777777766666655555 5555999999999999999999999999999998888899998888899999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHhCCCc
Q 014898          279 PVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLA-RMLGIDV  357 (416)
Q Consensus       279 Pl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~lla-rll~~~~  357 (416)
                      |+++|.++|+++|+..+.+.+.+++++.+..+++++.....+.+.+...+++++..+..+++.||..||+.+ +.... .
T Consensus       249 pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~~~~~i~~~~~~l~l~g~l~~Y~~~~~~~~~-~  327 (371)
T KOG2718|consen  249 PLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLFFGYQILLLGAALPLAGFLAGYLLSFSPLDD-V  327 (371)
T ss_pred             HHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch-h
Confidence            999999999999999999999999999999999998888888888888889999999999999999999996 43333 6


Q ss_pred             cceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHH
Q 014898          358 ASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSV  397 (416)
Q Consensus       358 ~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l  397 (416)
                      +++||+++|+||||..+++.+++..++||.++.|++...+
T Consensus       328 a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v  367 (371)
T KOG2718|consen  328 ATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSV  367 (371)
T ss_pred             hhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhh
Confidence            6899999999999999999999999999988887766544

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.96  E-value=8.1e-29  Score=228.91  Aligned_cols=178  Identities=39%  Similarity=0.627  Sum_probs=154.9

Q ss_pred             HHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898          148 IGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS-KLLNLPSHYAAGLILVGCCPGGTASNIVTYI  226 (416)
Q Consensus       148 ~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~-~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~  226 (416)
                      +.++++||++|++++.+|+++..||||.+..++++|++++|+++|+++ ..++.+++++.|+++++|||||..+++||++
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l   81 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL   81 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999 8889999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeec---hHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhCcC
Q 014898          227 ARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD---AMGLFMSTLQVVLLPVLGGAFLNQYFH--SLVKFVSPLM  301 (416)
Q Consensus       227 ~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~---~~~l~~~ll~~vllPl~lG~llr~~~p--~~~~~i~~~l  301 (416)
                      +|||.++++.++.++++++++++|+++.++.+...+.|   +++++.+++..+++|+++|+++|++.|  +..+++++..
T Consensus        82 ~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~~  161 (187)
T PF01758_consen   82 AGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPFL  161 (187)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCCH
T ss_pred             hCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999988777777   899999999999999999999999999  8888999999


Q ss_pred             chHHHHHHHHHHHHHHHhhHHHHh
Q 014898          302 PPIAVGTVAILCGNAIAQSASAIL  325 (416)
Q Consensus       302 ~~is~i~ll~ii~~~i~~~~~~i~  325 (416)
                      +.++.+.+++++...++.+.+.+.
T Consensus       162 ~~~s~~~l~~~i~~~~~~~~~~i~  185 (187)
T PF01758_consen  162 KPLSFILLLLIIVLIFASNASVIA  185 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHTH----
T ss_pred             hHHHHHHHHHHHHHHHHHhccccc
Confidence            999998888887777887776654

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.45  E-value=2.1e-12  Score=128.99  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=114.0

Q ss_pred             HhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh
Q 014898          130 LGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLI  209 (416)
Q Consensus       130 ~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glv  209 (416)
                      .|+.+|+......+.+...+.|++|+.+|+.++.++.+   ++++........+++++|++++++...++++++.....+
T Consensus       197 ~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~v  273 (321)
T TIGR00946       197 VGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAI  273 (321)
T ss_pred             HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            36778999988888999999999999999999887765   344667778888999999999999999999999999999


Q ss_pred             HhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL  256 (416)
Q Consensus       210 l~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll  256 (416)
                      +++++|++.++++++.++|+|.+.+...+.+||++|++++|+|+.++
T Consensus       274 l~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       274 LQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=99.40  E-value=7.1e-12  Score=124.89  Aligned_cols=124  Identities=20%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             HHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 014898          129 LLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGL  208 (416)
Q Consensus       129 l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~gl  208 (416)
                      ..|+..|+..++..+++...+.|+.|+.+|+++...+++   .+ +......+.|+++.|++++++...+++++.....+
T Consensus       187 l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~  262 (314)
T PRK09903        187 LVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMM  262 (314)
T ss_pred             HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            347789999999999999999999999999999877653   22 34456777899999999999999899999999999


Q ss_pred             hHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          209 ILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL  256 (416)
Q Consensus       209 vl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll  256 (416)
                      ++.+++|++.++++++.++|+|.+++...+.+||++|.+++|+|++++
T Consensus       263 vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        263 VLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>COG0679 Predicted permeases [General function prediction only]

Probab=99.27  E-value=1.5e-10  Score=115.45  Aligned_cols=141  Identities=24%  Similarity=0.355  Sum_probs=118.8

Q ss_pred             HHHHHHHHHH-HHHHHH---hhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHH
Q 014898          115 LISTAFPIWV-SLGCLL---GLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPIS  190 (416)
Q Consensus       115 ~l~~~~pl~i-~~~~l~---gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pll  190 (416)
                      .+.++.|++- ++|.++   |+..|+......+.+...+.|+.|+++|++++.+..++.  +++........+++++|++
T Consensus       164 ~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~--~~~~~~~~~~~kll~~Pl~  241 (311)
T COG0679         164 KLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGS--KPPIILIALSLKLLLAPLV  241 (311)
T ss_pred             HHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc--cchhHHHHHHHHHHHHHHH
Confidence            3344434333 444443   688999988888899999999999999999999555432  3345566666699999999


Q ss_pred             HHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          191 GFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA  257 (416)
Q Consensus       191 a~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~  257 (416)
                      +++++++++++++....+++.+++|++.++++++.++++|.+++...+++||+++.+++|.+..++.
T Consensus       242 ~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         242 ALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999988774

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.02  E-value=1.2e-08  Score=103.96  Aligned_cols=135  Identities=21%  Similarity=0.269  Sum_probs=111.0

Q ss_pred             HHHHHH-HHHHHHHhh---hcC----ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898          118 TAFPIW-VSLGCLLGL---VKP----SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI  189 (416)
Q Consensus       118 ~~~pl~-i~~~~l~gl---~~P----~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl  189 (416)
                      ++.|++ .++|+++++   ..|    +.+....+.+....+|+.|+.+|.++.....+... +.+......+.+++++|+
T Consensus       243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P~  321 (385)
T PF03547_consen  243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILPL  321 (385)
T ss_pred             hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHH
Confidence            343444 355665543   345    66667777889999999999999999876554332 334445568889999999


Q ss_pred             HHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014898          190 SGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLT  253 (416)
Q Consensus       190 la~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l  253 (416)
                      +++++...++++++....+++.+++|++..+.+++..++.|.+.+...+.++++++++++|+|+
T Consensus       322 i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  322 IGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.92  E-value=9.9e-10  Score=101.47  Aligned_cols=176  Identities=19%  Similarity=0.213  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHhhhcCccchhh---hH--HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898          118 TAFPIWVSLGCLLGLVKPSSFNWV---QP--KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGF  192 (416)
Q Consensus       118 ~~~pl~i~~~~l~gl~~P~~~~~~---~~--~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~  192 (416)
                      +|+...+.+....+-+-|+....-   .+  .+.++.+.-+++..|++++.|++..+.++++..+.+++..+.+.|-..|
T Consensus        23 ~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~  102 (287)
T KOG4821|consen   23 QWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVY  102 (287)
T ss_pred             chHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHH
Confidence            687777777777766767655321   11  1344566778899999999999999999999999999999999999999


Q ss_pred             HHHHhcC---CChhHHHHHhHhccCchhhHHHHH-HHHhCCChHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--------
Q 014898          193 LVSKLLN---LPSHYAAGLILVGCCPGGTASNIV-TYIARGNVALSV-LMTAASTLSAVVMTPFLTAKLAGQ--------  259 (416)
Q Consensus       193 ~l~~~~~---l~~~~~~glvl~~~~P~~~~s~i~-t~~~~Gn~~ls~-~lt~istlls~~~~Pl~l~ll~g~--------  259 (416)
                      ++..+..   .++++..|+.+.+|||+..+|++. |..+|||..... .....+.+.+....|-....+..+        
T Consensus       103 Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~~~~~~~~~  182 (287)
T KOG4821|consen  103 LFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNRAPFAYGNP  182 (287)
T ss_pred             HHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCccccCc
Confidence            9887653   567899999999999999999986 999999984222 233344455555555555544321        


Q ss_pred             eeeec----hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014898          260 YVAVD----AMGLFMSTLQVVLLPVLGGAFLNQYFHSL  293 (416)
Q Consensus       260 ~v~i~----~~~l~~~ll~~vllPl~lG~llr~~~p~~  293 (416)
                      .+.+.    ...++.+....+++|...|...+.+.|+-
T Consensus       183 a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  220 (287)
T KOG4821|consen  183 ATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG  220 (287)
T ss_pred             cccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence            01111    22344556667899999999999998874

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.56  E-value=2e-06  Score=84.90  Aligned_cols=223  Identities=19%  Similarity=0.224  Sum_probs=135.8

Q ss_pred             HHHHHHhhhcCccch--hhhHH----HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          125 SLGCLLGLVKPSSFN--WVQPK----WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL  198 (416)
Q Consensus       125 ~~~~l~gl~~P~~~~--~~~~~----l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~  198 (416)
                      .+|.++.-..|+.+.  ...+.    -....+.+-++++|.+++.|+....++|--   ..++.|+++-=++++.+++++
T Consensus        20 ~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~---~l~~~K~~~~~~~g~~~~~~~   96 (312)
T PRK12460         20 LIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGG---VLTITKLGVAIVIGLLVGKFF   96 (312)
T ss_pred             HHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhh---hhhhHHHHHHHHHHHHHHHHc
Confidence            456667777887642  11111    123468889999999999999988877632   344568999999999999999


Q ss_pred             CCChhHHH-HHhHhccCchhhHHHH---HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCce--eeechHHHHHHH
Q 014898          199 NLPSHYAA-GLILVGCCPGGTASNI---VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY--VAVDAMGLFMST  272 (416)
Q Consensus       199 ~l~~~~~~-glvl~~~~P~~~~s~i---~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~--v~i~~~~l~~~l  272 (416)
                      |.+.-.-. .+.+++++--. +...   .+.++|-+.+-....     ++++-.-|+...+-.+..  .++|+..+    
T Consensus        97 g~~g~~Gls~laiiaa~~~~-Ng~ly~al~~~yG~~~d~gA~~-----~~sl~~GPf~tm~aLga~gLA~ip~~~l----  166 (312)
T PRK12460         97 GAEGIFGLSGLAIVAAMSNS-NGGLYAALMGEFGDERDVGAIS-----ILSLNDGPFFTMLALGAAGLANIPIMAL----  166 (312)
T ss_pred             CcccccchHHHHHHHHHhcC-cHHHHHHHHHHcCCHhhhhHHh-----hhhhccCcHHHHHHHHHHHHhcCChHHH----
Confidence            86553221 12222222222 2222   366666555533322     223333455444333221  23444332    


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          273 LQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARM  352 (416)
Q Consensus       273 l~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarl  352 (416)
                       .-.++|+++|++++...+++.+..++-.+. ...+..+  ......+-+.+.+.++.-++..++.....+.++|+++|+
T Consensus       167 -v~lilpILiGmilGNld~~~~~~l~~Gi~f-~I~f~~f--~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rl  242 (312)
T PRK12460        167 -VAALLPLVLGMILGNLDPDMRKFLTKGGPL-LIPFFAF--ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRL  242 (312)
T ss_pred             -HHHHHHHHHHHHHhccchhhHHHHhccceE-eHHHHHH--HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence             337999999999999887776766666554 1111111  112233556777778777777777888899999999999


Q ss_pred             hCCCccceeeeE
Q 014898          353 LGIDVASCRTIS  364 (416)
Q Consensus       353 l~~~~~~~~al~  364 (416)
                      +|.|++...+++
T Consensus       243 lg~~~~~g~li~  254 (312)
T PRK12460        243 VGGTGIAGAAAS  254 (312)
T ss_pred             hCCChhHHHHHH
Confidence            987776544444

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.38  E-value=2.6e-07  Score=93.31  Aligned_cols=250  Identities=22%  Similarity=0.216  Sum_probs=169.4

Q ss_pred             HHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhC
Q 014898          150 LTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYS-VMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIAR  228 (416)
Q Consensus       150 l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~v-l~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~  228 (416)
                      +...|++.|++++.+.+.++.++++.+...+..++- ++|...+.....+..++..+...+...++|++..+++++.-.+
T Consensus        50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~  129 (371)
T KOG2718|consen   50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIK  129 (371)
T ss_pred             HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcC
Confidence            447899999999999999999998888888888998 9999999999999888888889999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHH-HHHHHhc----CceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCch
Q 014898          229 GNVALSVLMTAASTLSAVVMTP-FLTAKLA----GQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPP  303 (416)
Q Consensus       229 Gn~~ls~~lt~istlls~~~~P-l~l~ll~----g~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~  303 (416)
                      +|.+....++.-.+.+++..+| ++++=+.    +.....|...-..-++...+.|.-+|..++...++-...+...+..
T Consensus       130 ~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~  209 (371)
T KOG2718|consen  130 LDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTT  209 (371)
T ss_pred             ccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHH
Confidence            9999999999998888888888 3333221    2222222211122234567889999999988875533334444444


Q ss_pred             HHHHHHHHHH-HHHHHhhHHHHhhhchHHHHHHHHHHHHH--HHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHH
Q 014898          304 IAVGTVAILC-GNAIAQSASAILTSGPQVALAAFLLHASG--FFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLAS  380 (416)
Q Consensus       304 is~i~ll~ii-~~~i~~~~~~i~~~~~~ill~~~ll~~~g--f~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~  380 (416)
                      ++.+..+++. ...+-..+..+......+.  .-.+.+.+  +.+|+++.+     +-.+++..+++++||.+++.++..
T Consensus       210 ~stv~avi~~pl~s~~l~~~l~~~d~~~v~--~s~~~vv~~pl~lG~lL~~-----~~~k~t~~i~~~~~~vsv~~t~l~  282 (371)
T KOG2718|consen  210 ISTVLAVILTPLLSILLGRALIPVDALGVI--ASILQVVGLPLALGLLLNK-----WFPKRTVAIEPGLPPVSVCLTILC  282 (371)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhcccchhhh--hhhhHHhHHHHHHHHHhcc-----cCccceeeeecCCCchHHHhhhhh
Confidence            5544333322 1111111222222222222  23344444  788888774     345688999999999999988887


Q ss_pred             HhcC---CcchHHHHHHHHHHHHHHHHHHH
Q 014898          381 QHFG---SPMAAVPCAVSSVCHSIFGSVLA  407 (416)
Q Consensus       381 ~~f~---~p~~alP~~v~~l~q~i~~s~la  407 (416)
                      -.|+   |...-.. ..|.++|...+..++
T Consensus       283 ~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~  311 (371)
T KOG2718|consen  283 LAFPPGENGYLFLF-FGYQILLLGAALPLA  311 (371)
T ss_pred             hcCChhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence            7775   1122222 456666654444433

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=98.10  E-value=0.00086  Score=66.28  Aligned_cols=270  Identities=17%  Similarity=0.255  Sum_probs=148.5

Q ss_pred             HHHHHHhhhcCccchh---hhHH---HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          125 SLGCLLGLVKPSSFNW---VQPK---WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL  198 (416)
Q Consensus       125 ~~~~l~gl~~P~~~~~---~~~~---l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~  198 (416)
                      +++.++.-.+|+.++.   ..+.   =....+.+.++++|.++++|+....+||-   ...++.|+++-=++++.+.+++
T Consensus        20 llgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg---~~ll~~K~~~~~~lgl~~~~~f   96 (314)
T PF03812_consen   20 LLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKG---GVLLLVKFIIGALLGLLVGKFF   96 (314)
T ss_pred             HHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHHHHc
Confidence            5566677778877542   2211   13356888999999999999999988763   3344579999999999999999


Q ss_pred             CCChh---HH---HHHhHhccCchhhHHHH--HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eeeechHHH
Q 014898          199 NLPSH---YA---AGLILVGCCPGGTASNI--VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ--YVAVDAMGL  268 (416)
Q Consensus       199 ~l~~~---~~---~glvl~~~~P~~~~s~i--~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~--~v~i~~~~l  268 (416)
                      +.+.-   ..   ..+.+++++-....+..  ++.++|-+.+-+.. .    ++++..-|+...+..|.  ..++|+..+
T Consensus        97 g~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~-~----i~sl~~GPf~tMl~LG~sG~a~ip~~~l  171 (314)
T PF03812_consen   97 GPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF-S----ILSLNDGPFFTMLALGASGLANIPWMSL  171 (314)
T ss_pred             CccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH-H----HHHhhhhHHHHHHHHhhccccCCCHHHH
Confidence            76532   11   22333333333332222  35555555554332 2    33555566666555443  245666553


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898          269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV  348 (416)
Q Consensus       269 ~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~l  348 (416)
                           .-.++|+++|+++-..-|++.+...+-.+.+-- ++.+-.+.  ..|-+.+...+..=++..++..+......|+
T Consensus       172 -----v~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIP-F~~f~lGa--~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~  243 (314)
T PF03812_consen  172 -----VAALLPIIIGMILGNLDPDFRKFLAPGVPILIP-FFGFALGA--GINLSNIIKAGLSGILLGVIVVVVTGIPLYL  243 (314)
T ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeee-hhhhhhcC--CCCHHHHHHhCcchHHHHHHHHHHHhHHHHH
Confidence                 567899999999999988887766655433110 11111111  1244455554443333344444444455677


Q ss_pred             HHHHh-CCCccceeeeEEecccccH-HHHHHHHHH--hcCCc---chHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014898          349 LARML-GIDVASCRTISIEVGMQNS-VLGVVLASQ--HFGSP---MAAVPCAVSSVCHSIFGSVLAGIWRRS  413 (416)
Q Consensus       349 larll-~~~~~~~~al~~~tg~qN~-~Lai~La~~--~f~~p---~~alP~~v~~l~q~i~~s~la~~~~r~  413 (416)
                      .-|.. |.+  .....+..+..-|. +.-..+|..  .|. |   .+..=++...++-.+..-++..||.||
T Consensus       244 ~dr~i~~~~--g~aG~A~sstAGnavatPaaiA~~dP~~~-~~~~~ATaQvAaavIvTail~P~lt~~~~kr  312 (314)
T PF03812_consen  244 ADRLILKGN--GVAGAAISSTAGNAVATPAAIAAADPSFA-PYAASATAQVAAAVIVTAILTPILTSWWAKR  312 (314)
T ss_pred             HHHHHcCCC--CceeehHHhhhhhhhhhhHHHHHhChhhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77764 333  22344443444442 333333322  221 2   122222334445555566666777665

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.80  E-value=0.00074  Score=66.42  Aligned_cols=271  Identities=17%  Similarity=0.180  Sum_probs=147.3

Q ss_pred             HHHHHHhhhcCccchh---hhHH---HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          125 SLGCLLGLVKPSSFNW---VQPK---WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL  198 (416)
Q Consensus       125 ~~~~l~gl~~P~~~~~---~~~~---l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~  198 (416)
                      ++|.++.-..|+.+..   ..+.   -....+.+-++++|.+++.|+-...++|--   ..++.|+++-=++++.+++++
T Consensus        20 llga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~---~l~~~K~~i~~~~g~~~~~~~   96 (314)
T TIGR00793        20 FLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSG---TLVVTKIAVAWVVAAIASRII   96 (314)
T ss_pred             HHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcc---eeeeHHHHHHHHHHHHHHHHc
Confidence            4566677778877432   2211   133468889999999999999888877632   334568998889999999999


Q ss_pred             CCCh---hHHHH---HhHhccCchhhHHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eeeechHHH
Q 014898          199 NLPS---HYAAG---LILVGCCPGGTASN--IVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ--YVAVDAMGL  268 (416)
Q Consensus       199 ~l~~---~~~~g---lvl~~~~P~~~~s~--i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~--~v~i~~~~l  268 (416)
                      +.+.   ....|   +.+++++--...+.  -++.++|-+.+-....     ++++-.=|+...+..|.  ..++|+..+
T Consensus        97 g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~-----i~sl~~GPf~TMi~LG~sGlA~ip~~~l  171 (314)
T TIGR00793        97 PEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFV-----LMSLESGPLMTMVILGTAGIASFEPHVF  171 (314)
T ss_pred             CcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhh-----hhhhccCcHHHHHHHhhccCCCCCHHHH
Confidence            8654   11112   22222222211111  2366666555533322     23444456666555443  235666553


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898          269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV  348 (416)
Q Consensus       269 ~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~l  348 (416)
                           .-.++|+++|+++-..-|++.|.+.+-.+.+-- +..+-.+  -..|-+.+...+..-++..++.........|+
T Consensus       172 -----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIp-Ff~FaLG--aginl~~i~~aGl~GIlLGl~v~~vtG~~~~~  243 (314)
T TIGR00793       172 -----VGAVLPFLVGFALGNLDPELRDFFSKAVQTLIP-FFAFALG--NTIDLGVIIQTGLLGILLGVSVIILTGIPLIL  243 (314)
T ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHhccCCCeeee-hhhhhhc--CCCCHHHHHHhCcchHHHHHHHHHHHhHHHHH
Confidence                 567899999999999888887766655443111 1111111  12244455555443333344444455567788


Q ss_pred             HHHHhC-CCccceeeeEEecccccH-HHHHHHHH--HhcCC--cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014898          349 LARMLG-IDVASCRTISIEVGMQNS-VLGVVLAS--QHFGS--PMAAVPCAVSSVCHSIFGSVLAGIWRRS  413 (416)
Q Consensus       349 larll~-~~~~~~~al~~~tg~qN~-~Lai~La~--~~f~~--p~~alP~~v~~l~q~i~~s~la~~~~r~  413 (416)
                      .-|+++ .+...  ..+..+..-|. +.-..+|.  -.|..  +.+..=++-..+.-.+..-++..||.||
T Consensus       244 ~dr~~~g~~g~a--G~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr  312 (314)
T TIGR00793       244 ADKFIGGGDGTA--GIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKK  312 (314)
T ss_pred             HHHHhcCCCCch--hhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888774 23222  33333333442 33333332  22310  1111112234455566667777788665

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.57  E-value=0.044  Score=55.39  Aligned_cols=102  Identities=21%  Similarity=0.326  Sum_probs=85.3

Q ss_pred             HHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHHHhCCCh
Q 014898          153 TMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTYIARGNV  231 (416)
Q Consensus       153 ~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~~~~Gn~  231 (416)
                      .=..+|.+++.+++....+++....+..+......=+.+|.+.+.-..|...+    +.+++|+|.+.-+ +++-+|.|.
T Consensus        67 lG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~  142 (352)
T COG3180          67 LGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGADL  142 (352)
T ss_pred             HHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCCh
Confidence            33457889999999988888888888888888888888998888765665544    4679999998876 599999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014898          232 ALSVLMTAASTLSAVVMTPFLTAKLAG  258 (416)
Q Consensus       232 ~ls~~lt~istlls~~~~Pl~l~ll~g  258 (416)
                      .....+..+=-+.-..+.|+....+.|
T Consensus       143 ~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         143 RLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999888999999998874

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.55  E-value=0.12  Score=52.02  Aligned_cols=208  Identities=19%  Similarity=0.305  Sum_probs=129.4

Q ss_pred             HHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHHHh
Q 014898          149 GLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTYIA  227 (416)
Q Consensus       149 ~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~~~  227 (416)
                      ...++=..+|.+.+.+.+.+....+.......+......-+.+|.+.+..+.|...+    +++++|+|.+.-+ +++..
T Consensus        30 ~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~TA----~~~~~PGg~s~m~~la~~~  105 (318)
T PF05145_consen   30 GQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRATA----FFASMPGGLSEMVALAEEY  105 (318)
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH----HHHcCCccHHHHHHHHHHc
Confidence            334444567999999999988777777777777778888888888888888776443    5789999998776 59999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc----eeeechH---HHHHHHHHHHHHHHHHHHHHHHH-hHH--H----
Q 014898          228 RGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ----YVAVDAM---GLFMSTLQVVLLPVLGGAFLNQY-FHS--L----  293 (416)
Q Consensus       228 ~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~----~v~i~~~---~l~~~ll~~vllPl~lG~llr~~-~p~--~----  293 (416)
                      |+|...-+....+=.++-++++|+...++.+.    ..+.+..   .-...+...+.+-.+.|.+.|+. .|.  .    
T Consensus       106 gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpm  185 (318)
T PF05145_consen  106 GADTRRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLWLALLALAALAGGLLARRLRIPAPWLLGPM  185 (318)
T ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999999999999999887653    1111110   01112233333444444444443 232  0    


Q ss_pred             -----HHH---HhCcCchHHHHHHHHHHHHHHHhh--HHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHhCCCccce
Q 014898          294 -----VKF---VSPLMPPIAVGTVAILCGNAIAQS--ASAILT---SGPQVALAAFLLHASGFFFGYVLARMLGIDVASC  360 (416)
Q Consensus       294 -----~~~---i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~---~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~  360 (416)
                           .+.   ....++......--++++..++..  .+.+.+   .....+...+.+...++.++|+++++.+.|..+.
T Consensus       186 l~~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~  265 (318)
T PF05145_consen  186 LVSAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTA  265 (318)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence                 011   111122211112222334444432  222222   1223345566667788999999999998887543

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.26  E-value=0.2  Score=54.81  Aligned_cols=98  Identities=17%  Similarity=0.062  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHhHhccCchhhHHH
Q 014898          144 KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY--AAGLILVGCCPGGTASN  221 (416)
Q Consensus       144 ~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~--~~glvl~~~~P~~~~s~  221 (416)
                      .+..+.+.++||..|+.++++++++..++  .+..+. .+.++.-+++++++..++.+...  ..|..+..+ .++....
T Consensus        58 ~laelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g~-~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S-Staiv~~  133 (621)
T PRK03562         58 HFAEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGGA-LQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS-STAIAMQ  133 (621)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            45677888999999999999999865322  233333 45655555666677777765433  334443333 2334444


Q ss_pred             HHHHHhCCChH---HHHHHHHHHHHHH
Q 014898          222 IVTYIARGNVA---LSVLMTAASTLSA  245 (416)
Q Consensus       222 i~t~~~~Gn~~---ls~~lt~istlls  245 (416)
                      ++...-.-+..   .+.+...+.-+++
T Consensus       134 ~L~e~~~l~t~~G~~~l~~ll~~Dl~~  160 (621)
T PRK03562        134 AMNERNLMVTQMGRSAFAILLFQDIAA  160 (621)
T ss_pred             HHHHhccccCchHHHHHHHHHHHHHHH
Confidence            45444322222   3344444444443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.17  E-value=0.38  Score=52.49  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHhHhccCchhhHHH
Q 014898          144 KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYA--AGLILVGCCPGGTASN  221 (416)
Q Consensus       144 ~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~--~glvl~~~~P~~~~s~  221 (416)
                      .+..+.+.++||..|+.++++++++..+  +.+..+. .+.++.-++.+++...++.+...+  .|+. ++.+.++....
T Consensus        58 ~laelGvv~LLF~iGLel~~~~l~~~~~--~~~~~g~-~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~  133 (601)
T PRK03659         58 HFSELGVVFLMFIIGLELNPSKLWQLRR--SIFGVGA-AQVLLSAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQ  133 (601)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHH
Confidence            4566788999999999999999986533  2333333 345444434555555666654322  3322 23334444445


Q ss_pred             HHHHHh
Q 014898          222 IVTYIA  227 (416)
Q Consensus       222 i~t~~~  227 (416)
                      ++..+-
T Consensus       134 iL~e~~  139 (601)
T PRK03659        134 LMREKG  139 (601)
T ss_pred             HHHHcc
Confidence            555443

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=97.14  E-value=0.06  Score=54.26  Aligned_cols=230  Identities=17%  Similarity=0.198  Sum_probs=120.2

Q ss_pred             HHHHHHhhhcCccc--hhhhHH----HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          125 SLGCLLGLVKPSSF--NWVQPK----WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL  198 (416)
Q Consensus       125 ~~~~l~gl~~P~~~--~~~~~~----l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~  198 (416)
                      .++.++.-..|+.+  ..+.+.    -....+.+-++++|.++++++....++|--   ..++.++.+-=++++.+++.+
T Consensus        22 ~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~---~l~~~k~~~~~~~~~~~~~~~   98 (326)
T PRK05274         22 LLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGG---TLLLTKFAVAALVGVIAGKFI   98 (326)
T ss_pred             HHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhch---hHHHHHHHHHHHHHHHhhhcc
Confidence            45666666778742  222211    123467888999999999999988777632   233457777777888888887


Q ss_pred             CCCh---hHHHHHhH------hccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCce--eeechHH
Q 014898          199 NLPS---HYAAGLIL------VGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY--VAVDAMG  267 (416)
Q Consensus       199 ~l~~---~~~~glvl------~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~--v~i~~~~  267 (416)
                      +.+.   ....|.-.      +.-.=++...... ..++-+......     .+++.-.-|+....+.+..  -.++...
T Consensus        99 g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~-~~~g~~~d~ga~-----i~lsl~~Gp~~tM~lL~aagla~~p~~~  172 (326)
T PRK05274         99 GEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALM-GQYGTKEDAGAF-----VLMSLEDGPFMTMLALGAAGLASFPPPA  172 (326)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHhCCCCCcchH-----HHHHHhhhHHHHHHHHHhhCcccCCCch
Confidence            6432   11111111      1111122222222 222212111111     1222233354444443321  2344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 014898          268 LFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGY  347 (416)
Q Consensus       268 l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~  347 (416)
                      +.     -+++|+++|+.++.+.+++.+...+-...+   +=.........-+.+.+...++.-.+..+..+.....++|
T Consensus       173 li-----~allplliG~~lgnl~~~l~~~~~~Gi~~l---Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~  244 (326)
T PRK05274        173 LV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVL---IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLY  244 (326)
T ss_pred             hh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEE---HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhH
Confidence            32     223999999999998887777666655441   1011111112224455555565555556666667777899


Q ss_pred             HHHHHhCCCccceeeeEEecccccH
Q 014898          348 VLARMLGIDVASCRTISIEVGMQNS  372 (416)
Q Consensus       348 llarll~~~~~~~~al~~~tg~qN~  372 (416)
                      +..|+++.+++ ..-.+..++..|.
T Consensus       245 ~~~Rl~~~~~g-~~g~a~~ttaG~a  268 (326)
T PRK05274        245 LADRLIGGGNG-VAGAAAGSTAGNA  268 (326)
T ss_pred             hHhheeecCCC-cchHHHHHHHHHH
Confidence            99999865432 2223333455564

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.52  Score=48.82  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=79.4

Q ss_pred             HHHHHHhh---hcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHH-HHHHHHHH-hcC
Q 014898          125 SLGCLLGL---VKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMP-ISGFLVSK-LLN  199 (416)
Q Consensus       125 ~~~~l~gl---~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~P-lla~~l~~-~~~  199 (416)
                      +.|+++|-   .....-+.....+....+-+.||..|+..+.+++++..|+.   ..+...--+..| .++..... .++
T Consensus        38 laGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g  114 (397)
T COG0475          38 LAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGILG  114 (397)
T ss_pred             HHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555553   22222334444567788899999999999999999775542   222222334455 44422222 355


Q ss_pred             CChh--HHHHHhHhccCchhhHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHHHHHHHHhcCceeeec-hHHHHHHHH
Q 014898          200 LPSH--YAAGLILVGCCPGGTASNIVTYIARGNVA---LSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD-AMGLFMSTL  273 (416)
Q Consensus       200 l~~~--~~~glvl~~~~P~~~~s~i~t~~~~Gn~~---ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~-~~~l~~~ll  273 (416)
                      .+..  ...|..+ +..-++..+.++.+.-+=+.+   .......+.-+.+...+.+...+..+...+.+ ...+...+.
T Consensus       115 ~~~~~al~lg~~l-~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~  193 (397)
T COG0475         115 LSLIAALFLGAAL-ALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAIL  193 (397)
T ss_pred             cChHHHHHHHHHH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHH
Confidence            5443  3333333 233334455555553333333   44555556666666666666655544343333 234433333


Q ss_pred             HHHHHHHHHH
Q 014898          274 QVVLLPVLGG  283 (416)
Q Consensus       274 ~~vllPl~lG  283 (416)
                      ....+=..+|
T Consensus       194 ~f~~~~l~~g  203 (397)
T COG0475         194 AFLALLLLLG  203 (397)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.72  E-value=0.61  Score=46.61  Aligned_cols=134  Identities=21%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhh---hcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014898          119 AFPIWVSLGCLLGL---VKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS  195 (416)
Q Consensus       119 ~~pl~i~~~~l~gl---~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~  195 (416)
                      ...+.+++|.+++-   ..|+..+.-........+-.....+|.++++.|+.+.-.+  .+....+ .....=.+++.++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~--~~~~~~~-~v~~~~~~~~~lg  104 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWK--GLLIIII-VVILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCcc--HHHHHHH-HHHHHHHHHHHHH
Confidence            34667778888873   2344443333333334566777778999999999875332  3333333 3444445566777


Q ss_pred             -HhcCCChhHHHHHhHhccCchhhHHHHHH----HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          196 -KLLNLPSHYAAGLILVGCCPGGTASNIVT----YIARGNVALSVLMTAASTLSAVVMTPFLTAKL  256 (416)
Q Consensus       196 -~~~~l~~~~~~glvl~~~~P~~~~s~i~t----~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll  256 (416)
                       +.+++|+..+ -++-.+.+=||.++..-+    +--+-|.+.++..+++-..++++..|.+..++
T Consensus       105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence             9999987644 244444555555555431    22366788999999999999999999998765

; GO: 0016021 integral to membrane

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.62  E-value=1.4  Score=47.61  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=47.7

Q ss_pred             HHHHHHhhhcCccch--hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 014898          125 SLGCLLGLVKPSSFN--WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPS  202 (416)
Q Consensus       125 ~~~~l~gl~~P~~~~--~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~  202 (416)
                      +.|+++|-.......  .....+..+.+.+.||..|+.++++++++.   ++....+...++++.-+++++++..++.+.
T Consensus        38 laGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (558)
T PRK10669         38 LAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVATLLGMALSAVLGWSL  114 (558)
T ss_pred             HHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            455555433322221  223456778889999999999999999754   233344455566666666777777777543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=96.30  E-value=1.6  Score=48.91  Aligned_cols=54  Identities=15%  Similarity=0.100  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhhhcCccch--------hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhc
Q 014898          119 AFPIWVSLGCLLGLVKPSSFN--------WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAM  172 (416)
Q Consensus       119 ~~pl~i~~~~l~gl~~P~~~~--------~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~  172 (416)
                      ..++.+++|+++|-..-..+.        .....++-+.+.+.+|..|+.++.+.+++..+.
T Consensus        40 ~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrs  101 (810)
T TIGR00844        40 ESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVS  101 (810)
T ss_pred             HHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHH
Confidence            335555677777654222221        112225667899999999999999999955443

This model is specific for the fungal members of this family.

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.12  E-value=0.54  Score=42.21  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHH
Q 014898          147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTY  225 (416)
Q Consensus       147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~  225 (416)
                      ..+..++-..+|++.+.+++++..+.....+...+....+.=..++.+.+..+.|...+    +++++|+|...-. .+.
T Consensus        50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta----~La~~PGGl~~m~~~A~  125 (156)
T TIGR03082        50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTA----FLATSPGGASEMAALAA  125 (156)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHhCCchHHHHHHHHH
Confidence            34455566778999999999988777666666666666666666788888887776444    5789999998775 488


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          226 IARGNVALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       226 ~~~Gn~~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ..|+|...-+....+=.++-.+..|++..+
T Consensus       126 ~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       126 ELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            889999999999888888888888987654

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.09  E-value=2.7  Score=45.45  Aligned_cols=50  Identities=18%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhhcCcc--c--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhc
Q 014898          123 WVSLGCLLGLVKPSS--F--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAM  172 (416)
Q Consensus       123 ~i~~~~l~gl~~P~~--~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~  172 (416)
                      .++.|.++|-..+..  +  ......+..+++++++|..|++++.+++++..+.
T Consensus        36 ~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~   89 (562)
T PRK05326         36 FLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGP   89 (562)
T ss_pred             HHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence            335566666433221  1  1234457788999999999999999999976543

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=96.06  E-value=0.15  Score=51.83  Aligned_cols=108  Identities=21%  Similarity=0.329  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHH--h-HHHHHHHhCcCchHHHHHHHHHHHHHHHhh--HHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898          274 QVVLLPVLGGAFLNQY--F-HSLVKFVSPLMPPIAVGTVAILCGNAIAQS--ASAILTSGPQVALAAFLLHASGFFFGYV  348 (416)
Q Consensus       274 ~~vllPl~lG~llr~~--~-p~~~~~i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~~~~~ill~~~ll~~~gf~lg~l  348 (416)
                      .-+++-+++|.+++++  + ++..+.+.++.   -.+++=.+++..++..  .+.+. ..+.+.+...+...+++.++++
T Consensus         7 ~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   82 (385)
T PF03547_consen    7 LPIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLL-SLWFIPVFAFIIFILGLLLGFL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence            3456667788888875  1 22222222222   1233333334444432  12222 2334445566777888899999


Q ss_pred             HHHHhCCCccceeeeEEecccccH-HHHHHHHHHhcCC
Q 014898          349 LARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGS  385 (416)
Q Consensus       349 larll~~~~~~~~al~~~tg~qN~-~Lai~La~~~f~~  385 (416)
                      ..|.++.+++++......++..|. -+++.+..+.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~  120 (385)
T PF03547_consen   83 LSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE  120 (385)
T ss_pred             HHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc
Confidence            999999999999999998888996 7899999999975

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=96.05  E-value=1.8  Score=43.13  Aligned_cols=268  Identities=15%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             HHHHHHHHH--HHHHHHh-h--hcC-ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898          116 ISTAFPIWV--SLGCLLG-L--VKP-SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI  189 (416)
Q Consensus       116 l~~~~pl~i--~~~~l~g-l--~~P-~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl  189 (416)
                      +...+|+.+  .+|.+.| .  .++ +..+.+...+.++++|..+|..-.+-+.++-.   .............+..+-+
T Consensus         7 ~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   83 (321)
T TIGR00946         7 LETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQ---KSQSPVVLFLWGAFSGSYA   83 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            344455555  4455553 2  233 33455667788899999999765543222111   1111223333345666777


Q ss_pred             HHHHHHH-hcCCChhHHHHHhHhccCchhh-HHH-HHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHHhcCc-ee
Q 014898          190 SGFLVSK-LLNLPSHYAAGLILVGCCPGGT-ASN-IVTYIARGNVALS----VLMTAASTLSAVVMTPFLTAKLAGQ-YV  261 (416)
Q Consensus       190 la~~l~~-~~~l~~~~~~glvl~~~~P~~~-~s~-i~t~~~~Gn~~ls----~~lt~istlls~~~~Pl~l~ll~g~-~v  261 (416)
                      +++.+++ .++.+........+.++.+-.. ... +..... ||...+    .....+.+.+...+.-..+.-..++ .-
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (321)
T TIGR00946        84 LIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-GEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGGE  162 (321)
T ss_pred             HHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-cccchhhhHHHHHHHhccchhHHHHHHHHhcccccccc
Confidence            8888888 6666666665555555544322 223 334444 555432    1111122222222222111101111 10


Q ss_pred             e--ech----HHHHHHHHH-HHHHHHHHHHHHHHHh---HHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHH
Q 014898          262 A--VDA----MGLFMSTLQ-VVLLPVLGGAFLNQYF---HSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQV  331 (416)
Q Consensus       262 ~--i~~----~~l~~~ll~-~vllPl~lG~llr~~~---p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~i  331 (416)
                      +  -+.    ....++++. -.++-.++|+.++...   |+..++....++..+.-+.++.++..+..  ..........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~  240 (321)
T TIGR00946       163 GSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDA  240 (321)
T ss_pred             ccchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHH
Confidence            0  011    122333322 2445566677766542   44433322222222222333334433322  2222222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchH
Q 014898          332 ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAA  389 (416)
Q Consensus       332 ll~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~a  389 (416)
                      .....+=.+..-.+.+.+.+.++.+....++..+++++--...+..+|..+-.+++.+
T Consensus       241 ~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~a  298 (321)
T TIGR00946       241 ILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELA  298 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHH
Confidence            3333322334444556667778888888888888888888888888888876555433

>PRK09903 putative transporter YfdV; Provisional

Probab=95.76  E-value=2.4  Score=42.21  Aligned_cols=267  Identities=12%  Similarity=0.058  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHH--HHHHhh--hcCcc-chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898          115 LISTAFPIWVSL--GCLLGL--VKPSS-FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI  189 (416)
Q Consensus       115 ~l~~~~pl~i~~--~~l~gl--~~P~~-~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl  189 (416)
                      ++...+|+.+.+  |.+.+-  .+|+. .+.+.+.+.++++|..+|..-.+.+.++...   +.+......+ .++..-+
T Consensus         5 ~~~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~   80 (314)
T PRK09903          5 FIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA---DTRLTLVSLV-VIVGCFF   80 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHH-HHHHHHH
Confidence            445556666544  444433  23433 4566677888999999998776666555432   2233333333 3444445


Q ss_pred             HHHHHHH-hcCCChhHHHHHhHhccCch-hhHHHHHHHHhCCChHH-HHHHHHHHHHHHHHHHHHHHHHhcCc-e---ee
Q 014898          190 SGFLVSK-LLNLPSHYAAGLILVGCCPG-GTASNIVTYIARGNVAL-SVLMTAASTLSAVVMTPFLTAKLAGQ-Y---VA  262 (416)
Q Consensus       190 la~~l~~-~~~l~~~~~~glvl~~~~P~-~~~s~i~t~~~~Gn~~l-s~~lt~istlls~~~~Pl~l~ll~g~-~---v~  262 (416)
                      +++.+++ .++.+........+..+.+- |-...-.....=||.+. ++...........++.|.....+... .   -.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (314)
T PRK09903         81 FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK  160 (314)
T ss_pred             HHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            6666664 44555433323333333332 22333333333355432 22222222334455566665555311 1   11


Q ss_pred             echHHHHHHH-HHHHHHHHHHHHHHHHH---hHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHH
Q 014898          263 VDAMGLFMST-LQVVLLPVLGGAFLNQY---FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLL  338 (416)
Q Consensus       263 i~~~~l~~~l-l~~vllPl~lG~llr~~---~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll  338 (416)
                      -...+.++++ ---.++..++|+.++..   .|+..++.-+.++..+.-+-++.++..++.....   .....+...+.=
T Consensus       161 ~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~~~~~~~~~~K  237 (314)
T PRK09903        161 NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FSAEIAYNTFLK  237 (314)
T ss_pred             chHHHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccHHHHHHHHHH
Confidence            0112222322 12456666777776654   3554443333333222223333445555443211   112222222211


Q ss_pred             HHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcch
Q 014898          339 HASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMA  388 (416)
Q Consensus       339 ~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~  388 (416)
                      .+..-.+.+.+...++.+.....+..+++++--...+..+|..+-.|+..
T Consensus       238 li~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~  287 (314)
T PRK09903        238 LILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRT  287 (314)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHH
Confidence            22222233444555688888888888888888888888889888656643

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.74  E-value=2.1  Score=41.45  Aligned_cols=165  Identities=18%  Similarity=0.182  Sum_probs=80.8

Q ss_pred             HHHHHHHhhhcCccc--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH--HHHHHHHhcC
Q 014898          124 VSLGCLLGLVKPSSF--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI--SGFLVSKLLN  199 (416)
Q Consensus       124 i~~~~l~gl~~P~~~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl--la~~l~~~~~  199 (416)
                      ++.|+++|-..-+..  .+....+....+.+.||..|++++.+++++..|+  ....+. ..+ +.|.  +++..+..++
T Consensus        23 il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~--~~~~~~-~~~-~~~~~~~~~~~~~~~~   98 (273)
T TIGR00932        23 LLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKA--AFGVGV-LQV-LVPGVLLGLLLGHLLG   98 (273)
T ss_pred             HHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHHH-HHH-HHHHHHHHHHHHHHHC
Confidence            355666652211111  1223456778899999999999999999976543  222332 223 3452  2344566666


Q ss_pred             CChh--HHHHHhHhccCchhhHHHHHHHH--hCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHH
Q 014898          200 LPSH--YAAGLILVGCCPGGTASNIVTYI--ARGNV-ALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQ  274 (416)
Q Consensus       200 l~~~--~~~glvl~~~~P~~~~s~i~t~~--~~Gn~-~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~  274 (416)
                      .+..  ...|..+....|.. ...++..+  .+.+. .+......++-+++.+..-+......+..  .+..........
T Consensus        99 ~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~  175 (273)
T TIGR00932        99 LALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLK  175 (273)
T ss_pred             CCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHH
Confidence            5433  22333333322221 12222222  22232 24556666788888777666655543321  122222222222


Q ss_pred             HHHHHHHHHHHHHHHhHHHHH
Q 014898          275 VVLLPVLGGAFLNQYFHSLVK  295 (416)
Q Consensus       275 ~vllPl~lG~llr~~~p~~~~  295 (416)
                      .+..-+..+.+.|+..+...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~  196 (273)
T TIGR00932       176 VFLAFLLLVLLGRWLLRPVLR  196 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344455555555444433

>COG0679 Predicted permeases [General function prediction only]

Probab=95.46  E-value=3.1  Score=41.50  Aligned_cols=266  Identities=17%  Similarity=0.164  Sum_probs=139.0

Q ss_pred             HHHHHHH--HHHHHHh---hhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898          118 TAFPIWV--SLGCLLG---LVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGF  192 (416)
Q Consensus       118 ~~~pl~i--~~~~l~g---l~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~  192 (416)
                      ..+|+.+  .+|.+++   ..-++..+.+.+.+.++++|.+.|..=.+-+.++.    ++.+.+...++...+..=+..+
T Consensus         8 ~vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   83 (311)
T COG0679           8 VVLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAFFLLAL   83 (311)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHHHHHHH
Confidence            4445555  4444443   23334334567778889999999986555555444    2333444444444444433344


Q ss_pred             HHHHhcCCChhHHHHHhHhccCchhhHH-HHHHHHhCCChHHHHHHHHHHHHH-HHHHHHHHHHHhcCceeeechHHHHH
Q 014898          193 LVSKLLNLPSHYAAGLILVGCCPGGTAS-NIVTYIARGNVALSVLMTAASTLS-AVVMTPFLTAKLAGQYVAVDAMGLFM  270 (416)
Q Consensus       193 ~l~~~~~l~~~~~~glvl~~~~P~~~~s-~i~t~~~~Gn~~ls~~lt~istll-s~~~~Pl~l~ll~g~~v~i~~~~l~~  270 (416)
                      ...+.+..+.....+..+.+.-|-...- .-.+...-||..++.......... ...+.-.+...-.++.-+...+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~  163 (311)
T COG0679          84 IGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLK  163 (311)
T ss_pred             HHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            4444556667767777777777766644 446777778877776655533322 22222222222222222223334443


Q ss_pred             HHHH-HHHHHHHHHHHHHHH---hHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHH-HHHHHHHH
Q 014898          271 STLQ-VVLLPVLGGAFLNQY---FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFL-LHASGFFF  345 (416)
Q Consensus       271 ~ll~-~vllPl~lG~llr~~---~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~l-l~~~gf~l  345 (416)
                      +++. =.+.-.++|.+++..   .|+..++..+.++..+.-+.++..+..++..  ............... =.+..-..
T Consensus       164 ~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~--~~~~~~~~~~~~~~~~kll~~Pl~  241 (311)
T COG0679         164 KLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFL--KLKGSKPPIILIALSLKLLLAPLV  241 (311)
T ss_pred             HHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh--hhccccchhHHHHHHHHHHHHHHH
Confidence            3322 233444556666642   3554444333333333333344455555442  111111222222222 12344556


Q ss_pred             HHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchH
Q 014898          346 GYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAA  389 (416)
Q Consensus       346 g~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~a  389 (416)
                      .+..++.+|.+..+..++.+++++--...+..+|..+-.++..+
T Consensus       242 ~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~la  285 (311)
T COG0679         242 ALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLA  285 (311)
T ss_pred             HHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHH
Confidence            66677888898887777777777777777788888865555433

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=95.31  E-value=6.9  Score=44.52  Aligned_cols=109  Identities=12%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHH-HHHHHHhcCCC---h-h----HHHHHhHhc
Q 014898          142 QPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPIS-GFLVSKLLNLP---S-H----YAAGLILVG  212 (416)
Q Consensus       142 ~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pll-a~~l~~~~~l~---~-~----~~~glvl~~  212 (416)
                      ...+..+.+.+.||..|+.++++.+++..|+  .+.+++. .+ +.|++ +++++..++..   . .    ...|+.+. 
T Consensus       104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-  178 (832)
T PLN03159        104 LETMANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-  178 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-
Confidence            3456778888999999999999999865443  3334433 23 34443 44454444211   1 1    12222221 


Q ss_pred             cCchhhHHHHHHHHh--CCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          213 CCPGGTASNIVTYIA--RGNV-ALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       213 ~~P~~~~s~i~t~~~--~Gn~-~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ..-.++.+.++..+-  +.+. .++++...++-+++.+.+-+...+
T Consensus       179 ~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        179 VTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             HhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111223333343322  3333 255666677777777666555443

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=94.01  E-value=2.7  Score=39.92  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 014898          166 LRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSA  245 (416)
Q Consensus       166 l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls  245 (416)
                      .+...++++.++.+....-++--...+.++++++++++....+.-=+  =+.+.+.-.++..|||.++.+..+.++-+++
T Consensus        70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~sLta~~VvitGi~G  147 (215)
T PF04172_consen   70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIPSLTAVFVVITGILG  147 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChHHHHHHHHHHHhhHH
Confidence            33444677888888888888888889999999999998776554322  1333444569999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 014898          246 VVMTPFLTAKL  256 (416)
Q Consensus       246 ~~~~Pl~l~ll  256 (416)
                      ...-|.++.++
T Consensus       148 a~~g~~llk~~  158 (215)
T PF04172_consen  148 AVLGPPLLKLL  158 (215)
T ss_pred             HHhHHHHHhHc
Confidence            99999999887

>COG2855 Predicted membrane protein [Function unknown]

Probab=93.94  E-value=7.8  Score=39.15  Aligned_cols=133  Identities=22%  Similarity=0.247  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhhcCcc--chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          120 FPIWVSLGCLLGLVKPSS--FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL  197 (416)
Q Consensus       120 ~pl~i~~~~l~gl~~P~~--~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~  197 (416)
                      +.+.+++|.+++......  ...-........+-+...-.|.++++.|+.+.-.+  . ...........=++++.+++.
T Consensus        40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~-v~~~~~~l~~t~~~~~~lg~~  116 (334)
T COG2855          40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--G-VLIIAITLSSTFLFAYFLGKL  116 (334)
T ss_pred             HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--H-HHHHHHHHHHHHHHHHHHHHH
Confidence            456667788777433222  22112222334455555666999999999876433  2 222223445555678899999


Q ss_pred             cCCChhHHHHHhHhccCchhhHHHHHH----HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          198 LNLPSHYAAGLILVGCCPGGTASNIVT----YIARGNVALSVLMTAASTLSAVVMTPFLTAKL  256 (416)
Q Consensus       198 ~~l~~~~~~glvl~~~~P~~~~s~i~t----~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll  256 (416)
                      +++|...+. ++-+++.=||.++..-+    .--+-|++.++..+++-..++.+..|.+..++
T Consensus       117 lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         117 LGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             hCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence            999886653 45555666666655442    23355677888888888888999999998776

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=93.63  E-value=8  Score=39.54  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCC
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIIS-GFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG  229 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~-~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~G  229 (416)
                      +++++++|.-.++.-+   +.|||..+. +...|+.+.=  ++..+..+|++...+..+-+.+.+=+.++-++-+.++. 
T Consensus       109 ~LIFlGIGAMtDFgpl---lanP~~~ll~gaaAQ~GiF~--t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-  182 (399)
T TIGR03136       109 CILFFGIGAMSDISFI---LARPWASITVALFAEMGTFA--TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-  182 (399)
T ss_pred             HHHHHhccHHhcchHH---HhChHHHHHHHHHHHhhHHH--HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-
Confidence            4566788987755554   589999888 7888987754  44555667888888888888888877665555444442 


Q ss_pred             ChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014898          230 NVALSVLMTAAS-TLSAVVMTPFLTAKLA  257 (416)
Q Consensus       230 n~~ls~~lt~is-tlls~~~~Pl~l~ll~  257 (416)
                      |.--+++...-| .-+-++.-|-+++++.
T Consensus       183 ~Llg~IaVAAYsYMaLVPiiqPpimklLt  211 (399)
T TIGR03136       183 DLFVPISIIAYLYLSLTYAGYPYLIKLLV  211 (399)
T ss_pred             HhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence            222222222222 2234556677888874

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=93.62  E-value=9  Score=38.70  Aligned_cols=101  Identities=23%  Similarity=0.349  Sum_probs=67.9

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCC
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGN  230 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn  230 (416)
                      +++++++|.-.++.   -.+.|||..+.+...|+.+.  .++..+..+|+++..+..+-+.+.+=+.++-++-+.++ -|
T Consensus        73 ~LIF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~  146 (360)
T PF03977_consen   73 PLIFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PH  146 (360)
T ss_pred             HHHHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HH
Confidence            45667888777554   45589999999999999875  45566667788888888888888887766555544444 23


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014898          231 VALSVLMTAAS-TLSAVVMTPFLTAKLA  257 (416)
Q Consensus       231 ~~ls~~lt~is-tlls~~~~Pl~l~ll~  257 (416)
                      .--.++...-| .-+-++.-|-+++++.
T Consensus       147 LlgpIaVaAYsYMaLvPiiqPpimklLt  174 (360)
T PF03977_consen  147 LLGPIAVAAYSYMALVPIIQPPIMKLLT  174 (360)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence            32233333322 2345566788888885

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>PRK10711 hypothetical protein; Provisional

Probab=93.30  E-value=1.3  Score=42.41  Aligned_cols=84  Identities=19%  Similarity=0.097  Sum_probs=69.1

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 014898          171 AMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP  250 (416)
Q Consensus       171 ~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~P  250 (416)
                      ++++.+..+...--++--..++.++++++++++....+.==+.  +.+.+--.++..||+.++++..+.++-+++.+.-|
T Consensus        86 ~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~  163 (231)
T PRK10711         86 ARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGH  163 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            6677888888888888888999999999999987765542221  23334446999999999999999999999999999


Q ss_pred             HHHHHh
Q 014898          251 FLTAKL  256 (416)
Q Consensus       251 l~l~ll  256 (416)
                      .++.++
T Consensus       164 ~llk~~  169 (231)
T PRK10711        164 TLLNAM  169 (231)
T ss_pred             HHHHHc
Confidence            999988

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=93.25  E-value=2.4  Score=42.65  Aligned_cols=107  Identities=19%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH-HH
Q 014898          147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV-TY  225 (416)
Q Consensus       147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~-t~  225 (416)
                      ..+--++=..+|++.+.+++++..|.........+.-....=+.++.+.++.+.|.    .-.+++.+|+|...-.. +.
T Consensus       207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~  282 (318)
T PF05145_consen  207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIAL  282 (318)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHH
Confidence            33444455678999999999887665555555555556666777888888887765    34568899999988764 89


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          226 IARGNVALSVLMTAASTLSAVVMTPFLTAKLA  257 (416)
Q Consensus       226 ~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~  257 (416)
                      ..|.|.++......+=.+.-.++.|++..++.
T Consensus       283 ~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  283 ALGADVAFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888899999988764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=93.12  E-value=0.55  Score=46.93  Aligned_cols=105  Identities=19%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCcCchHH----HHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 014898          275 VVLLPVLGGAFLNQYFHSLVKFVSPLMPPIA----VGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLA  350 (416)
Q Consensus       275 ~vllPl~lG~llr~~~p~~~~~i~~~l~~is----~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~lla  350 (416)
                      ..++.+++|++++.+..+..++.++-.+..+    -..+++   ....-+-+.+.+.++..++...+.....+.++|+++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL---lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg  104 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL---LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH---HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            4567778999999733222223333222222    112221   112223455666777667777777888899999999


Q ss_pred             -HHhCCCccceeeeEEecccccHHHHHHHHHHh
Q 014898          351 -RMLGIDVASCRTISIEVGMQNSVLGVVLASQH  382 (416)
Q Consensus       351 -rll~~~~~~~~al~~~tg~qN~~Lai~La~~~  382 (416)
                       |++|+|++.+.-++-.++..=.+-.++.+...
T Consensus       105 ~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i  137 (305)
T PF03601_consen  105 RRLFGLDRKLAILIAAGTSICGASAIAATAPVI  137 (305)
T ss_pred             HHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence             99999988777766666655444444444333

; GO: 0016021 integral to membrane

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=93.02  E-value=1.5  Score=42.03  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhh---HHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 014898          171 AMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGT---ASNIVTYIARGNVALSVLMTAASTLSAVV  247 (416)
Q Consensus       171 ~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~---~s~i~t~~~~Gn~~ls~~lt~istlls~~  247 (416)
                      |+++.+..++.+--++--+.++.++++++++++....+     .|=.+   .+--.++..||+.++++..+.++-+++.+
T Consensus        91 ~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai  165 (232)
T PRK04288         91 KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYA  165 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            67788889988888888889999999999999766554     44444   34446999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 014898          248 MTPFLTAKL  256 (416)
Q Consensus       248 ~~Pl~l~ll  256 (416)
                      .-|.++.++
T Consensus       166 ~g~~llk~~  174 (232)
T PRK04288        166 LGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHc
Confidence            999999988

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=92.94  E-value=1.6  Score=41.72  Aligned_cols=85  Identities=22%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Q 014898          170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMT  249 (416)
Q Consensus       170 ~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~  249 (416)
                      .++++.+..+...--++--..++.++++++++++....+.-=  +=+.+.+--.++..||+.++++..+.++-+++..+-
T Consensus        84 k~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pk--SvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g  161 (226)
T TIGR00659        84 KKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPK--SVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG  161 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhH--HhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            366677888887777777788999999999998776644321  113334444699999999999999999999999999


Q ss_pred             HHHHHHh
Q 014898          250 PFLTAKL  256 (416)
Q Consensus       250 Pl~l~ll  256 (416)
                      |.++.++
T Consensus       162 ~~ll~~~  168 (226)
T TIGR00659       162 PMVLRYF  168 (226)
T ss_pred             HHHHHHc
Confidence            9999888

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=92.91  E-value=0.14  Score=51.88  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc---C----CChhHHHHHhHhccCc
Q 014898          143 PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL---N----LPSHYAAGLILVGCCP  215 (416)
Q Consensus       143 ~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~---~----l~~~~~~glvl~~~~P  215 (416)
                      ..+...++|.+++..|-++-. ++++.-.+.+.++-..+.+++++|+.+.++....   +    .||.+...+++..++|
T Consensus       284 ~llG~~~IP~illvLGgnL~~-g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~P  362 (408)
T KOG2722|consen  284 TLLGDGAIPCILLVLGGNLIQ-GLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASP  362 (408)
T ss_pred             HHhccccchhhhhhhcccccc-CchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCC
Confidence            356777899999999988854 4444444555555566679999999998877654   2    4678889999999999


Q ss_pred             hhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          216 GGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       216 ~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ++.....+|.+.|--.+=+......+-..+.+.+-+|...
T Consensus       363 pAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~  402 (408)
T KOG2722|consen  363 PAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVF  402 (408)
T ss_pred             chhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999887777777777777776666655543

>TIGR00698 conserved hypothetical integral membrane protein

Probab=91.50  E-value=17  Score=36.81  Aligned_cols=133  Identities=13%  Similarity=0.115  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhhc----CccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-
Q 014898          121 PIWVSLGCLLGLVK----PSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS-  195 (416)
Q Consensus       121 pl~i~~~~l~gl~~----P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~-  195 (416)
                      .+.+++|.+++..+    |+....-.+......+-.....+|.+++++|+.+.-.  +.+...... .+..=++++.++ 
T Consensus        35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~-v~~~~~~~~~~g~  111 (335)
T TIGR00698        35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLI-LTSTFFLTVFLGS  111 (335)
T ss_pred             HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHH-HHHHHHHHHHHHH
Confidence            45667777776532    2332222222233445556667799999999976532  233332222 222223345565 


Q ss_pred             HhcCCChhHHHHHhHhccCchhhHHHHH-H---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          196 KLLNLPSHYAAGLILVGCCPGGTASNIV-T---YIARGNVALSVLMTAASTLSAVVMTPFLTAKLA  257 (416)
Q Consensus       196 ~~~~l~~~~~~glvl~~~~P~~~~s~i~-t---~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~  257 (416)
                      +.+++|++.+. ++-.+.+=||.++.+- +   +--+-|.+++++.+++-..++++..|++..++.
T Consensus       112 k~l~l~~~~~~-Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       112 SRLKLDKQMSI-LLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHhCCChhHHH-HHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            78998876542 3344444455555443 2   223456779999999999999999999987663

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=91.19  E-value=3.3  Score=39.57  Aligned_cols=95  Identities=13%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEeccccc--HHHHHHHHHHhcCCc-chHHHH
Q 014898          316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQN--SVLGVVLASQHFGSP-MAAVPC  392 (416)
Q Consensus       316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN--~~Lai~La~~~f~~p-~~alP~  392 (416)
                      -++++++.+...++.++..+++=...+...+++++|++|.+++-.+++.=    |.  +++|+-++...-+.| .+++-+
T Consensus        78 PLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~P----kSvTTpiAm~vs~~iGGip~ltav~V  153 (230)
T COG1346          78 PLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLP----KSVTTPIAMEVSESIGGIPALTAVFV  153 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcc----cccccHHHHHHHHhcCCchHHHHHHH
Confidence            46777788877776677777777788999999999999999887776543    54  466666666665555 455556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 014898          393 AVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       393 ~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++-+++-.+.|..+-.++|-|+
T Consensus       154 i~tGi~Gavlg~~llk~~~i~~  175 (230)
T COG1346         154 ILTGILGAVLGPLLLKLLRIRH  175 (230)
T ss_pred             HHHHHHHHHHHHHHHHHhccCc
Confidence            6667777777777766665443

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=91.01  E-value=3.6  Score=41.20  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             HHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 014898          125 SLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY  204 (416)
Q Consensus       125 ~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~  204 (416)
                      ++|.++|-..++.-+...+. ....+++..|.+|.+++++++.+.-  +..+..+++ ..++.=.+.+.+.++++.+...
T Consensus       174 LiGmilGNld~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~-vv~~t~~~~~~i~rllg~~~~~  249 (312)
T PRK12460        174 VLGMILGNLDPDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVL-VTIVTGFFNIFADRLVGGTGIA  249 (312)
T ss_pred             HHHHHHhccchhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHH-HHHHHHHHHHHHHHHhCCChhH
Confidence            44555555444322222222 2236788889999999999997652  335555554 3445555677778888877654


Q ss_pred             HHHHhHh--c-cCchhhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          205 AAGLILV--G-CCPGGTASNI-VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL  256 (416)
Q Consensus       205 ~~glvl~--~-~~P~~~~s~i-~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll  256 (416)
                      .  ..+-  + ..=|++++.. ..-..+..++.++..+..+.+...+..|++..++
T Consensus       250 g--~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~  303 (312)
T PRK12460        250 G--AAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWV  303 (312)
T ss_pred             H--HHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  3332  1 1112221111 1333445566666666677777777777777665

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=90.17  E-value=30  Score=37.22  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             HHHHHHHhhh--cCcc-chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhh
Q 014898          124 VSLGCLLGLV--KPSS-FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALA  171 (416)
Q Consensus       124 i~~~~l~gl~--~P~~-~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~  171 (416)
                      ++.|+++|..  .|.. .+.  +......++.++|..|++++.+++++..+
T Consensus        29 il~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~   77 (525)
T TIGR00831        29 ILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFR   77 (525)
T ss_pred             HHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3557777742  2211 111  22345689999999999999999986543

This model is specific for the bacterial members of this family.

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=90.14  E-value=22  Score=35.69  Aligned_cols=127  Identities=23%  Similarity=0.386  Sum_probs=76.1

Q ss_pred             HHHHHhhhcCccc--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 014898          126 LGCLLGLVKPSSF--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSH  203 (416)
Q Consensus       126 ~~~l~gl~~P~~~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~  203 (416)
                      .|+..|=.-|++.  +.+.+.+....+-+.||++|+..+.+|+... |.  .-+-+.+.|..+.-++++++.+..+.+- 
T Consensus        39 AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLav-k~--iAipgAl~qia~at~lg~gL~~~lgws~-  114 (408)
T COG4651          39 AGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAV-KA--IAIPGALAQIALATLLGMGLSSLLGWSF-  114 (408)
T ss_pred             HHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhH-HH--HhcchHHHHHHHHHHHHhHHHHHcCCCc-
Confidence            3444454456654  2344566778888999999999999999754 22  1244666788888999999999886432 


Q ss_pred             HHHHHhHhccCchhhHHHHH-HHHh-------CCChHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 014898          204 YAAGLILVGCCPGGTASNIV-TYIA-------RGNVALSV-LMTAASTLSAVVMTPFLTAKLA  257 (416)
Q Consensus       204 ~~~glvl~~~~P~~~~s~i~-t~~~-------~Gn~~ls~-~lt~istlls~~~~Pl~l~ll~  257 (416)
                       -.|+++--|...+...... +.+-       +|..+..- .+-=+..+++.+..|..-..+.
T Consensus       115 -~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g  176 (408)
T COG4651         115 -GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG  176 (408)
T ss_pred             -ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence             2344443344444333333 3332       33333322 1222455666677777777664

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.36  E-value=8.4  Score=42.31  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--HHHHHhHhccCchhhHHHHH
Q 014898          146 TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSH--YAAGLILVGCCPGGTASNIV  223 (416)
Q Consensus       146 ~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~--~~~glvl~~~~P~~~~s~i~  223 (416)
                      ..+.+++-+.++|+++++..+.   .+|..++..++.-++.-++..++.++.++.+..  ...|+.   .++.|-.+.+.
T Consensus       270 ~~lll~lFFi~vG~~id~~~l~---~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~---L~~~Gef~~vl  343 (621)
T PRK03562        270 KGLLLGLFFIAVGMSIDFGTLL---ENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL---LGQGGEFAFVV  343 (621)
T ss_pred             HHHHHHHHHHHhhhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH---HhccccHHHHH
Confidence            3466788888999999987776   344554444555678888899999999987543  344543   34556666665


Q ss_pred             HHHhC--C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          224 TYIAR--G--NVALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       224 t~~~~--G--n~~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ...+.  |  +.+....++ +..+++.+++|++..+
T Consensus       344 ~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~  378 (621)
T PRK03562        344 FGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVL  378 (621)
T ss_pred             HHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            43322  1  233333333 3557777888877654

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=89.36  E-value=28  Score=35.81  Aligned_cols=103  Identities=18%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI  226 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~  226 (416)
                      +++++++|.-.++.-+   +.|||.++.|...|+.+.-.+..++...    +|++...+..+-+.+.+=+.++-++-+.+
T Consensus       138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15477        138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            3566788877755554   5899999999999988765543333221    25677777777777777666554444444


Q ss_pred             hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898          227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA  257 (416)
Q Consensus       227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~  257 (416)
                      + -|.--+++...-|- -+-++.-|-+++++.
T Consensus       215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15477        215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            3 22222222222222 234555677788774

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=89.35  E-value=28  Score=35.80  Aligned_cols=103  Identities=18%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI  226 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~  226 (416)
                      +++++++|.-.++.-+   +.|||.++.|...|+.+.-.+..++...    +|++...+..+-+.+.+=+.++-++-+.+
T Consensus       138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15476        138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            3566788877755554   5899999999999988765543333221    25677777777777777665554444444


Q ss_pred             hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898          227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA  257 (416)
Q Consensus       227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~  257 (416)
                      + -|.--+++...-|- -+-++.-|-+++++.
T Consensus       215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15476        215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            3 22222222222222 234555677788774

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=89.20  E-value=29  Score=35.68  Aligned_cols=103  Identities=18%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI  226 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~  226 (416)
                      +++++++|.-.++.-+   +.|||.++.|...|+.+.-.+..++...    +|++...+..+-+.+.+=+.++-++-+.+
T Consensus       138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL  214 (433)
T PRK15475        138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL  214 (433)
T ss_pred             HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence            3566788877755554   5899999999999998765543333221    25677777777777777666554444444


Q ss_pred             hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898          227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA  257 (416)
Q Consensus       227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~  257 (416)
                      + -|.--+++...-|- -+-++.-|-+++++.
T Consensus       215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15475        215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            3 22222222222222 234556677788774

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=88.97  E-value=3.2  Score=38.71  Aligned_cols=132  Identities=16%  Similarity=0.280  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHH---HhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898          277 LLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASA---ILTSGPQVALAAFLLHASGFFFGYVLARML  353 (416)
Q Consensus       277 llPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~---i~~~~~~ill~~~ll~~~gf~lg~llarll  353 (416)
                      +..+++|.++-+..+...+.. ..........+++.++.-++.+++.   +.+.+++.+...+.-.+.....|++.++.+
T Consensus         2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll   80 (191)
T PF03956_consen    2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL   80 (191)
T ss_pred             eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677777776654321111 2222334555666677777766433   444567777777777778888899999999


Q ss_pred             CCCccceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898          354 GIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRR  412 (416)
Q Consensus       354 ~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r  412 (416)
                      +.+.+|+.+++  .|+-=-++.-++.+... +|....-.-+..++-=+.+-+..++..|
T Consensus        81 ~~~~~~~lav~--sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r  136 (191)
T PF03956_consen   81 GLSLKESLAVA--SGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR  136 (191)
T ss_pred             cCCHHHHHHHH--ccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777766  46655567666666655 4655544445566665666666666655

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=88.40  E-value=25  Score=35.90  Aligned_cols=109  Identities=16%  Similarity=0.152  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH-
Q 014898          145 WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV-  223 (416)
Q Consensus       145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~-  223 (416)
                      +...+-.++.-..|++.+...+++..|--....+..+..+.+.=..++.+.+..+.|...    .+++.+|+|...-.. 
T Consensus       238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~t----a~La~sPGGl~~ma~~  313 (352)
T COG3180         238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNT----AYLATSPGGLDTMAAI  313 (352)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHcCCCcHHHHHHH
Confidence            333444455667899999999987755444455555556667777788888888877643    467899999988865 


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898          224 TYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA  257 (416)
Q Consensus       224 t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~  257 (416)
                      +...+.|.++-.++.++=-++-.+..|.+.+.+.
T Consensus       314 A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         314 AAALGADPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666669999999999888887788888877663

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.72  E-value=8.6  Score=36.76  Aligned_cols=87  Identities=24%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH---HHHHhCCChHHHHHHHHHH
Q 014898          165 DLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI---VTYIARGNVALSVLMTAAS  241 (416)
Q Consensus       165 ~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i---~t~~~~Gn~~ls~~lt~is  241 (416)
                      +.+...|+++.++.+.+.--++-=..++.++++|+++++....     .+|=...+++   .++..||-.++.+..+.++
T Consensus        82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S-----l~PkSvTTpiAm~vs~~iGGip~ltav~Vi~t  156 (230)
T COG1346          82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS-----LLPKSVTTPIAMEVSESIGGIPALTAVFVILT  156 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----hcccccccHHHHHHHHhcCCchHHHHHHHHHH
Confidence            3334447788899988888777788899999999999976544     4565554443   5999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 014898          242 TLSAVVMTPFLTAKL  256 (416)
Q Consensus       242 tlls~~~~Pl~l~ll  256 (416)
                      -++.-+.-|.++..+
T Consensus       157 Gi~Gavlg~~llk~~  171 (230)
T COG1346         157 GILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999887

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=87.41  E-value=38  Score=34.94  Aligned_cols=110  Identities=18%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhh
Q 014898          140 WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKE-IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGT  218 (416)
Q Consensus       140 ~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~-l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~  218 (416)
                      .+.+++.+.+++++++.    .+.+++.+.-+|.-. ...+.+...+..+ +++.+.+..-.++.+...-.+.+. =.|.
T Consensus        55 ~v~~~~vPlai~LlLl~----~Dlr~i~~~g~~~l~~F~~~~~g~viG~~-va~~l~~~~l~~~~wk~ag~l~gs-yiGG  128 (378)
T PF05684_consen   55 FVWTYLVPLAIPLLLLS----ADLRRILRLGGRLLLAFLIGAVGTVIGAV-VAFLLFGGFLGPEGWKIAGMLAGS-YIGG  128 (378)
T ss_pred             HHHHHHHHHHHHHHHHH----ccHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHhc-ccCc
Confidence            44456666777777764    577777655333211 2222222333333 333333332113333333333333 3333


Q ss_pred             HHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          219 ASN--IVTYIARGNVALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       219 ~s~--i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ..|  .+....+-+.++-..+.+.+++.+-+.+.+++.+
T Consensus       129 s~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l  167 (378)
T PF05684_consen  129 SVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL  167 (378)
T ss_pred             hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333  3588889999999999999999998888877654

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=87.12  E-value=10  Score=36.07  Aligned_cols=95  Identities=15%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898          316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC  392 (416)
Q Consensus       316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~  392 (416)
                      -++++++.+......++....+=...+...++++++++|.|++...++    .-|+.  ++|+.++...-++| .+++-+
T Consensus        65 PLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl----~pkSVTtpiAi~is~~iGG~~sLta~~V  140 (215)
T PF04172_consen   65 PLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL----APKSVTTPIAIEISEQIGGIPSLTAVFV  140 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----HHHHhhHHHHHHHHHHhCChHHHHHHHH
Confidence            455666666665555555555556678888999999999988766653    44775  55555665665555 344445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 014898          393 AVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       393 ~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++.+++-.+++-.+-.++|=|+
T Consensus       141 vitGi~Ga~~g~~llk~~~I~~  162 (215)
T PF04172_consen  141 VITGILGAVLGPPLLKLLRIKD  162 (215)
T ss_pred             HHHhhHHHHhHHHHHhHccccc
Confidence            5555555555555555555444

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=86.91  E-value=36  Score=34.42  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChhHHHHHhHhccCchhhHHHHHH
Q 014898          151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNL------PSHYAAGLILVGCCPGGTASNIVT  224 (416)
Q Consensus       151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l------~~~~~~glvl~~~~P~~~~s~i~t  224 (416)
                      .++++++|.-.++.   -.+.||+..+.+...|+.+.=.  +..+..+|+      +...+..+-+.+.+=+.++-++-+
T Consensus        67 ~LIFlGIGAmtDFg---pllanP~~~llGaaAQ~GiF~t--~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~  141 (354)
T TIGR01109        67 LLIFMGIGALTDFG---PLLANPRTLLLGAAAQFGIFAT--VFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSG  141 (354)
T ss_pred             HHHHHhccHHhhhH---HHHhChHHHHHHHHHHhhHHHH--HHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHh
Confidence            45667888777555   4458999999999999887643  344455566      446666666666665555444433


Q ss_pred             HHhCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898          225 YIARGNVALSVLMTAAST-LSAVVMTPFLTAKLA  257 (416)
Q Consensus       225 ~~~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~  257 (416)
                      .++ -|.--+++...-|- -+-++.-|-+++++.
T Consensus       142 ~la-p~Llg~IaVAAYsYMaLvPiiqPpimklLt  174 (354)
T TIGR01109       142 KLA-PELLAAIAVAAYSYMALVPIIQPPIMKALT  174 (354)
T ss_pred             hhh-hHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence            333 22222222222222 234556677788774

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=86.24  E-value=25  Score=38.42  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHhHhccCchhhHHHHH
Q 014898          146 TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY--AAGLILVGCCPGGTASNIV  223 (416)
Q Consensus       146 ~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~--~~glvl~~~~P~~~~s~i~  223 (416)
                      ..+.+++-+..+|+++++..+.   .++..++...+.-++.-++..++.++.++.+...  ..|+.   ..|.|-.+.+.
T Consensus       267 ~~lll~lFFi~vGm~id~~~l~---~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl  340 (601)
T PRK03659        267 KGLLLGLFFISVGMALNLGVLY---THLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVL  340 (601)
T ss_pred             HHHHHHHHHHHHhhhccHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHH
Confidence            3567788888999999988776   3455555555556788888899999988876543  34433   46667777665


Q ss_pred             HHHhC--CC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898          224 TYIAR--GN-VALSVLMTAASTLSAVVMTPFLTAK  255 (416)
Q Consensus       224 t~~~~--Gn-~~ls~~lt~istlls~~~~Pl~l~l  255 (416)
                      ...+.  |- .+-.....+...+++.+++|++..+
T Consensus       341 ~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~  375 (601)
T PRK03659        341 FSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL  375 (601)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33321  11 1112222345556666777776654

>PRK10711 hypothetical protein; Provisional

Probab=85.23  E-value=17  Score=35.00  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898          316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC  392 (416)
Q Consensus       316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~  392 (416)
                      -++++++.+......++....+=...+...+++++|++|.|++-..++.    -|..  ++|+.++...-+.| .+++-+
T Consensus        76 PLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~----pkSVTtPIAm~is~~iGG~~sLta~~V  151 (231)
T PRK10711         76 PLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL----PKSVTTPIAMAVGGSIGGIPAISAVCV  151 (231)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh----hhhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence            4567777777666666666666677889999999999999887666643    4765  55555565555554 455555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 014898          393 AVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       393 ~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++.+++-.+++-.+-.+.|=|+
T Consensus       152 iitGi~Ga~~g~~llk~~rI~~  173 (231)
T PRK10711        152 IFVGILGAVFGHTLLNAMRIRT  173 (231)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCC
Confidence            5566666666665555555444

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=85.17  E-value=14  Score=35.44  Aligned_cols=95  Identities=11%  Similarity=0.140  Sum_probs=62.0

Q ss_pred             HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898          316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC  392 (416)
Q Consensus       316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~  392 (416)
                      -++++++.+....+.++..+++=...+...+++++|++|.|++-..++    .-|+.  ++|+.++...-+.| .+++-+
T Consensus        81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl----~pKSVTtPIAm~is~~iGG~psLtA~~V  156 (232)
T PRK04288         81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM----LPQAATTAIALPVSAGIGGIKEITSFAV  156 (232)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----hhHhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence            456677777766666666666667788889999999999998655553    34765  55556666665555 355555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 014898          393 AVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       393 ~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++.+++-.+++-.+-.+.|=|+
T Consensus       157 iitGi~Gai~g~~llk~~~I~~  178 (232)
T PRK04288        157 IFNAVIIYALGAKFLKLFRIKN  178 (232)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCC
Confidence            5556655555555555555444

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=84.95  E-value=9.8  Score=34.75  Aligned_cols=77  Identities=13%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHH-HhCCCccceeeeEEecccccHHHHHHHHHH
Q 014898          304 IAVGTVAILCGNAIAQSA-SAILTSGPQVALAAFLLHASGFFFGYVLAR-MLGIDVASCRTISIEVGMQNSVLGVVLASQ  381 (416)
Q Consensus       304 is~i~ll~ii~~~i~~~~-~~i~~~~~~ill~~~ll~~~gf~lg~llar-ll~~~~~~~~al~~~tg~qN~~Lai~La~~  381 (416)
                      +...+.+..++...+++- +.+.+.++...+.+++.+..+..+++..+| .+|.|+..  +...-+|.++.+-++.-|..
T Consensus        58 ~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~G~~aGa~T~tp~L~~A~~  135 (169)
T PF06826_consen   58 LGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGI--AAGILAGALTSTPALAAAQE  135 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHccccCcHHHHHHHH
Confidence            344444444554444432 334556788888899999999999999998 89998653  33334666655555555544


Q ss_pred             h
Q 014898          382 H  382 (416)
Q Consensus       382 ~  382 (416)
                      .
T Consensus       136 ~  136 (169)
T PF06826_consen  136 A  136 (169)
T ss_pred             h
Confidence            4

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=84.39  E-value=22  Score=34.09  Aligned_cols=95  Identities=15%  Similarity=0.204  Sum_probs=58.4

Q ss_pred             HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898          316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC  392 (416)
Q Consensus       316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~  392 (416)
                      -++++++.+......++..+++=...+...++++++++|.+++-..+    ..-|+.  ++|+.++...-++| .+++-+
T Consensus        75 PLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~S----l~pkSvTtpiAm~vs~~iGG~~sLta~~v  150 (226)
T TIGR00659        75 PLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIAS----LLPKSVTTPIAMHVSEMIGGIPAVTAVFV  150 (226)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH----hhhHHhhHHHHHHHHHHhCChHHHHHHHH
Confidence            45666766666555555555555667888999999999998765554    344775  55555665665555 344445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Q 014898          393 AVSSVCHSIFGSVLAGIWRRST  414 (416)
Q Consensus       393 ~v~~l~q~i~~s~la~~~~r~~  414 (416)
                      ++.+++-.+++..+-.++|-|+
T Consensus       151 vitGi~Ga~~g~~ll~~~~i~~  172 (226)
T TIGR00659       151 ILTGLLGTVFGPMVLRYFRVKN  172 (226)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc
Confidence            5555555555555544544443

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=81.33  E-value=8.4  Score=39.07  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             hHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHhCCCccceeeeEEecccccHHHHHHHH
Q 014898          320 SASAILTSGPQVALAAFLLHASGFFFGYVLA-RMLGIDVASCRTISIEVGMQNSVLGVVLA  379 (416)
Q Consensus       320 ~~~~i~~~~~~ill~~~ll~~~gf~lg~lla-rll~~~~~~~~al~~~tg~qN~~Lai~La  379 (416)
                      +-+.+.+.++..++..+......+.++++++ |++|+|++.+.-++-.++..=.+-.++.+
T Consensus        80 ~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a  140 (335)
T TIGR00698        80 TFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIE  140 (335)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence            3455666677666666667777888889998 79999988777766655554433333333

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		1e-41
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		9e-41

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 6/308 (1%)
Query: 112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK--WXXXXXXXXXXXXXXXXXXDDLRGA 169
           I   I   F +W +L        P +F W  P   W                  D L   
Sbjct: 7   ISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDIL--- 63
Query: 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229
              PK +I G + Q+++MP + +L+SKLLNLP+  A G+ILVGCCPGGTASN++TY+ARG
Sbjct: 64  FKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARG 123
Query: 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289
           NVALSV +T+ STL + ++TP +   LAG+ + + A G+ MS +++VLLP++ G  +++ 
Sbjct: 124 NVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV 183
Query: 290 FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349
             S  + ++  +P ++V  + ++ G  +  S   I+ SG  +     L +  G+  G+  
Sbjct: 184 LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFA 243
Query: 350 ARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
           A+  G+   + +T++IEVGMQNS +   + A+    +P+ AVP A+ SV H+I GS+LA 
Sbjct: 244 AKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLAT 303
Query: 409 IWRRSTPK 416
            W     K
Sbjct: 304 YWAAKAGK 311

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  164 bits (415), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 171/308 (55%), Gaps = 6/308 (1%)
Query: 112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK--WXXXXXXXXXXXXXXXXXXDDLRGA 169
           I   I   F +W +L        P +F W  P   W                  D L   
Sbjct: 12  ISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDIL--- 68
Query: 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229
              PK +I G + Q+++MP + + +SKLLNLP+  A G+ILVGCCPGGTASN++TY+ARG
Sbjct: 69  FKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARG 128
Query: 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289
           NVALSV +T+ STL++ ++TP +   LAG+ + + A G+ MS +++VLLP++ G  +++ 
Sbjct: 129 NVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV 188
Query: 290 FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349
             S  + ++  +P ++V  + ++ G  +  S   I+ SG  +     L +  G+  G+  
Sbjct: 189 LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFA 248
Query: 350 ARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
           A+  G+   + + ++IEVGMQNS +   + A+    +P+ AVP A+ SV H+I GS+LA 
Sbjct: 249 AKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLAT 308
Query: 409 IWRRSTPK 416
            W     K
Sbjct: 309 YWAAKAGK 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	1e-117

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  344 bits (883), Expect = e-117
 Identities = 116/315 (36%), Positives = 183/315 (58%), Gaps = 2/315 (0%)

Query: 103 RSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLT 162
            +    +  I   I   F +W +L        P +F W  P +    L + M GMG+TL 
Sbjct: 3   AASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP-YIPWLLGIIMFGMGLTLK 61

Query: 163 LDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI 222
             D       PK +I G + Q+++MP + + +SKLLNLP+  A G+ILVGCCPGGTASN+
Sbjct: 62  PSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV 121

Query: 223 VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLG 282
           +TY+ARGNVALSV +T+ STL++ ++TP +   LAG+ + + A G+ MS +++VLLP++ 
Sbjct: 122 MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVL 181

Query: 283 GAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASG 342
           G  +++   S  + ++  +P ++V  + ++ G  +  S   I+ SG  +     L +  G
Sbjct: 182 GLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIG 241

Query: 343 FFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFG-SPMAAVPCAVSSVCHSI 401
           +  G+  A+  G+   + + ++IEVGMQNS L   LA+ HF  +P+ AVP A+ SV H+I
Sbjct: 242 YLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNI 301

Query: 402 FGSVLAGIWRRSTPK 416
            GS+LA  W     K
Sbjct: 302 SGSLLATYWAAKAGK 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=1.3e-51  Score=411.20  Aligned_cols=310  Identities=37%  Similarity=0.664  Sum_probs=290.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHH
Q 014898          105 FREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQY  184 (416)
Q Consensus       105 ~~~~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~  184 (416)
                      .++.++++.+++.+++++++++++++|+..|+.+.+..++ .+.+++++||++|++++.+|+++.++|||.+..++++|+
T Consensus         5 ~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~   83 (332)
T 3zux_A            5 SMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF   83 (332)
T ss_dssp             --CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence            3456678888999999999999999999999998887654 456899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeec
Q 014898          185 SVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD  264 (416)
Q Consensus       185 vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~  264 (416)
                      +++|+++|+++++++++++++.|+++++||||+.+|++||+++|||.++++.++++||+++++++|+++.++.|+.+++|
T Consensus        84 vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~  163 (332)
T 3zux_A           84 AIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQ  163 (332)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHH
Q 014898          265 AMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFF  344 (416)
Q Consensus       265 ~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~  344 (416)
                      +.+++.+++..+++|+++|+++|++.|++.++.++.++.++...+++++...++.+++.+.+.++.++.++++++.++|.
T Consensus       164 ~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~  243 (332)
T 3zux_A          164 AAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYL  243 (332)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888888888888888888888777888889999999999


Q ss_pred             HHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014898          345 FGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP  415 (416)
Q Consensus       345 lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~~~~r~~~  415 (416)
                      +||+++|++|++++|++|+++|||+||+++|+++|..+|+ +|.+++|+++|+++|++.+++++.+|+||+.
T Consensus       244 lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~  315 (332)
T 3zux_A          244 LGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAG  315 (332)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            9999999999999999999999999999999999999996 6899999999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00