Citrus Sinensis ID: 014916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPATSIASKSEGTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
cccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEEEEEcccccEEEEEEEEEEEEEccccccEEEEEEEccccEEEEccccccccEEEccccccEEEEEEccccccccccEEEEEEcccHHHHHHHHHHHcc
cccHHccccccHHHccccEcccccccccccccccHHcccccccccHHHHcccEEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccEEcccccEEEEcccccHHHHHHHHEEEEEEccHHHHHccccEEEEEEEcccccEEEEEEEcccEEEEEEEEEEccccEcccccccEEEEEEEcccccccccHEEEEEEEccHHHHHHHHHHHcc
mgdaesalppskkraagrelsrdnpglddeedsselesgtfkkaTDEVLATRRIVKVrrnqtastpssnpfagirlvpstepsatvtpatteptktvspAATELLEssenkvsvdanndagkeaekgdgednkqseskidepvaveaassepekgedesskqtesknepasadaagkkssddkengaeksevdngktagvdkpenedeketshettdssqlssfgqlssTQNAftglagtgfststfafgsipkdgsasnstsasvfgqvnngnsslfntpatsiasksegttfpsmQEVVVETGEENEKVVFSADSVLFEFLdgswkergkgelkvNVSTNATGRARLLMRARGNYRLILNaslypdmkltnmdkkgITFACinsategksglSTFALKFRDASIVEEFQTAVAF
mgdaesalppskkraagrelsrdnpglddeedsselesgtfkkatdevlatrrivkvrrnqtastpssnpfagirlVPSTEPSatvtpatteptktvSPAATellessenkvsvdanndagkeaekgdgednkqseskidepvaveaassepekgedesskqtesknepasadaagkkssddkengaeksevdngktagvdkpenedeketshettdssqlssfGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPATsiasksegttfPSMQEVVVETGEENEKVVFSADSVLFEFLDgswkergkgelkvnvstnatgraRLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
MGDAESALPPSKKRAAGRELSRDNPGlddeedsselesGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLvpstepsatvtpatteptKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPasadaagkkssddkENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDssqlssfgqlssTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPATSIASKSEGTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
*******************************************************************************************************************************************************************************************************************************************GLAGTGFSTSTFAF***********************************************************EKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEF******
*******************************************************************************************************************************************************************************************************************************************************************************************************************NEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
***************************************TFKKATDEVLATRRIVKVR*********SNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGK*************************************************************************KTAG***************************LSSTQNAFTGLAGTGFSTSTFAFGSIPK*********ASVFGQVNNGNSSLFNTPATSIASKSEGTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
************************************************LATRRIVKVRRN***S**SSNPFAGIRLVPST*********************************************************************************************************************************************S***QLSSTQNAFTGLA****************************************************GTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
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MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPATSIASKSEGTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q9H6Z4567 Ran-binding protein 3 OS= yes no 0.225 0.165 0.373 5e-10
Q9CT10491 Ran-binding protein 3 OS= yes no 0.262 0.221 0.365 6e-10
P48820 1085 E3 SUMO-protein ligase Ra no no 0.262 0.100 0.316 7e-10
Q86VV4465 Ran-binding protein 3-lik no no 0.199 0.178 0.397 8e-10
Q4R4T9499 Ran-binding protein 3 OS= N/A no 0.225 0.188 0.373 8e-10
Q7Z3J3 1758 RanBP2-like and GRIP doma no no 0.262 0.062 0.324 8e-10
Q5R4Y2494 Ran-binding protein 3 OS= no no 0.216 0.182 0.378 2e-09
P49792 3224 E3 SUMO-protein ligase Ra no no 0.262 0.033 0.316 2e-09
P0DJD0 1748 RANBP2-like and GRIP doma no no 0.262 0.062 0.316 3e-09
A6NKT7 1758 RanBP2-like and GRIP doma no no 0.262 0.062 0.316 4e-09
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1 Back     alignment and function desciption
 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLM 351
           +++V V TGEE E  V      LF F     SW ERG+G L++N   ST+  T ++RL+M
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445

Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 390
           R +G+ RLILN  L+  M++    +K I    +++  +G
Sbjct: 446 RTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 484
Acts as a cofactor for XPO1/CRM1-mediated nuclear export, perhaps as export complex scaffolding protein. Bound to XPO1/CRM1, stabilizes the XPO1/CRM1-cargo interaction. In the absence of Ran-bound GTP prevents binding of XPO1/CRM1 to the nuclear pore complex. Binds to CHC1/RCC1 and increases the guanine nucleotide exchange activity of CHC1/RCC1. Recruits XPO1/CRM1 to CHC1/RCC1 in a Ran-dependent manner. Negative regulator of TGF-beta signaling through interaction with the R-SMAD proteins, SMAD2 and SMAD3, and mediating their nuclear export.
Homo sapiens (taxid: 9606)
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2 Back     alignment and function description
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2 Back     alignment and function description
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2 Back     alignment and function description
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=3 Back     alignment and function description
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1 Back     alignment and function description
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 Back     alignment and function description
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens GN=RGPD1 PE=2 SV=1 Back     alignment and function description
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens GN=RGPD3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
255574554445 ran-binding protein, putative [Ricinus c 0.963 0.901 0.608 1e-123
224058811469 predicted protein [Populus trichocarpa] 0.963 0.855 0.575 1e-121
224073815437 predicted protein [Populus trichocarpa] 0.932 0.887 0.592 1e-119
449491723466 PREDICTED: uncharacterized protein LOC10 0.975 0.871 0.556 1e-116
118487390 517 unknown [Populus trichocarpa] 0.980 0.789 0.539 1e-110
147789984449 hypothetical protein VITISV_004512 [Viti 0.971 0.899 0.594 1e-105
359482951417 PREDICTED: uncharacterized protein LOC10 0.903 0.901 0.585 1e-103
356550557453 PREDICTED: uncharacterized protein LOC10 0.959 0.880 0.534 1e-101
356556006451 PREDICTED: brefeldin A resistance protei 0.956 0.882 0.545 1e-100
18403992440 nucleoporin 50 protein [Arabidopsis thal 0.954 0.902 0.508 7e-98
>gi|255574554|ref|XP_002528188.1| ran-binding protein, putative [Ricinus communis] gi|223532400|gb|EEF34195.1| ran-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/432 (60%), Positives = 309/432 (71%), Gaps = 31/432 (7%)

Query: 1   MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60
           MGDAE+ LP SKKRAAGRE+SRDNPGLDDEED+ E E+GTFK+A+DEVLA RRIVKVRR+
Sbjct: 1   MGDAENTLPSSKKRAAGREISRDNPGLDDEEDTLEQETGTFKRASDEVLAGRRIVKVRRS 60

Query: 61  QTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDA 120
           QT+STPSSNPFAGIRLVP  EP           T  ++ AATE + S+E K S D  NDA
Sbjct: 61  QTSSTPSSNPFAGIRLVPPPEP-----------TTVLAAAATEAVTSNE-KASEDRKNDA 108

Query: 121 GKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGE-----DESSKQTESKNEPASADA- 174
            K+ E+G  E  KQ ESK +E VA   A    E  E     DE ++       PA  D  
Sbjct: 109 VKDTEEGKDETGKQLESKSEEQVAETVAKEIAEDKENNGVVDEGTESKVDNENPAEDDKT 168

Query: 175 ------AGKKSSDDKENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDSSQLS----SF 224
                  G+K  ++K  G E++E  N K    DK E E++K+   E  D S  S    SF
Sbjct: 169 ENETAEGGEKIENEKAAGDEETE--NEKAVEGDKTETEEKKDNGSENVDPSAESKPLSSF 226

Query: 225 GQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASV-FGQVNNGNSSLFNTPAT 283
            QLSS+QNAFTGLAGTGFST++F FGS+ KDGS+  ST +   FG  NNG+SS+F TP +
Sbjct: 227 QQLSSSQNAFTGLAGTGFSTASFTFGSVSKDGSSGTSTGSLFGFGLSNNGSSSIFGTPGS 286

Query: 284 SIASKSEGTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNA 343
           SI SK+EGT FPSMQE+ VETGEENE V FSADSVLFEFL+G WKERGKGELKVNVST  
Sbjct: 287 SIVSKNEGTGFPSMQEIPVETGEENETVAFSADSVLFEFLNGGWKERGKGELKVNVSTTG 346

Query: 344 TGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRD 403
           T RARLLMRARGNYRLILNASLYPDMKLTNM+K+G+TFAC+NS +E K GLSTFALKF+D
Sbjct: 347 TERARLLMRARGNYRLILNASLYPDMKLTNMEKRGVTFACMNSTSENKDGLSTFALKFKD 406

Query: 404 ASIVEEFQTAVA 415
            S+VE+F+ AVA
Sbjct: 407 GSVVEDFRAAVA 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058811|ref|XP_002299634.1| predicted protein [Populus trichocarpa] gi|222846892|gb|EEE84439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224073815|ref|XP_002304181.1| predicted protein [Populus trichocarpa] gi|222841613|gb|EEE79160.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449491723|ref|XP_004158984.1| PREDICTED: uncharacterized protein LOC101224991 [Cucumis sativus] Back     alignment and taxonomy information
>gi|118487390|gb|ABK95523.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147789984|emb|CAN59845.1| hypothetical protein VITISV_004512 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482951|ref|XP_003632864.1| PREDICTED: uncharacterized protein LOC100265296 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550557|ref|XP_003543652.1| PREDICTED: uncharacterized protein LOC100816316 [Glycine max] Back     alignment and taxonomy information
>gi|356556006|ref|XP_003546318.1| PREDICTED: brefeldin A resistance protein-like [Glycine max] Back     alignment and taxonomy information
>gi|18403992|ref|NP_564606.1| nucleoporin 50 protein [Arabidopsis thaliana] gi|12323129|gb|AAG51549.1|AC037424_14 unknown protein; 23094-21772 [Arabidopsis thaliana] gi|14335002|gb|AAK59765.1| At1g52380/F19K6_4 [Arabidopsis thaliana] gi|16323322|gb|AAL15374.1| At1g52380/F19K6_4 [Arabidopsis thaliana] gi|332194676|gb|AEE32797.1| nucleoporin 50 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2018204440 AT1G52380 [Arabidopsis thalian 0.956 0.904 0.452 1.2e-83
TAIR|locus:2093372465 AT3G15970 [Arabidopsis thalian 0.730 0.653 0.470 1.8e-64
DICTYBASE|DDB_G0278271372 DDB_G0278271 "Ran-binding prot 0.706 0.790 0.264 2.8e-16
FB|FBgn0039110449 RanBP3 "Ran binding protein 3" 0.680 0.630 0.207 4.9e-13
POMBASE|SPCC18B5.07c549 nup61 "nucleoporin Nup61" [Sch 0.634 0.480 0.253 1.8e-12
ASPGD|ASPL0000004916493 AN10754 [Emericella nidulans ( 0.641 0.541 0.277 3.9e-12
UNIPROTKB|F5H4C2439 RANBP3 "Ran-binding protein 3" 0.668 0.633 0.250 4.2e-11
UNIPROTKB|Q9H6Z4567 RANBP3 "Ran-binding protein 3" 0.668 0.490 0.250 7.2e-11
UNIPROTKB|F1PS48557 RANBP3 "Uncharacterized protei 0.661 0.493 0.284 8.7e-11
ZFIN|ZDB-GENE-040426-1627525 zgc:66385 "zgc:66385" [Danio r 0.680 0.539 0.233 1.3e-10
TAIR|locus:2018204 AT1G52380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 192/424 (45%), Positives = 255/424 (60%)

Query:     1 MGDAESALPPSKKRAAGRELSRDNPGXXXXXXXXXXXXGTFKKATDEVLATRRIVKVRRN 60
             MGD+E+   PSKKR A ++LSRDNPG            GTFKKA+DEVLA+RRIV+V+R 
Sbjct:     1 MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query:    61 QTASTP--SSNPFAGIRLXXXXXXXXXXXXXXXXXXKTVSPAATELLESSENKVSVDANN 118
             + ++ P  +SNPFAGI+L                   T +P A   L  +E   +V  +N
Sbjct:    61 EPSAAPVAASNPFAGIQLVPTTAPASTPVG-------TNAPLAESKLAPAE---AVVEDN 110

Query:   119 DAGKEAEKGDGEDNKQSESKIDEPVAV-EAASSEPEKGEDESSKQTE---SKNEPXXXXX 174
                 + E+GD  D+K    K+D   AV E      +K ++   K  +   +  E      
Sbjct:   111 QKASDIEEGDEVDSK----KVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVS 166

Query:   175 XXXXXXXXXENGAEKSEVDNGKTAGVDKPENEDEK----ETSHETTDXXXXXXXXXXXXT 230
                        G ++++    K +G D+ E ++++    E + +  D             
Sbjct:   167 CDTNVCNNAVEGTDQTDFPLEKDSGGDQAEKKEKEGNGIEEADKNGDNGAFSSFQQHSSN 226

Query:   231 QNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPATSIASKSE 290
             +NAFTGLA T  S S+F+FG + +DGS     S   FG  ++ +SS+F    +SI  KSE
Sbjct:   227 KNAFTGLASTEASGSSFSFGLVSQDGSTGTG-SLFGFGLPSSNSSSIFGATGSSIIKKSE 285

Query:   291 GTTFPSMQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLL 350
             G+ FP  QEV  ETGEENEKV FSADS++FE+LDG WKERGKGELKVNVS+N  G+ARL+
Sbjct:   286 GSGFPPKQEVSTETGEENEKVAFSADSIMFEYLDGGWKERGKGELKVNVSSN-DGKARLV 344

Query:   351 MRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEF 410
             MRA+GNYRLILNASLYP+MKL NMDKKGITFAC+NS +EGK GLSTFALKF+D +IVEEF
Sbjct:   345 MRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEF 404

Query:   411 QTAV 414
             + A+
Sbjct:   405 RVAI 408
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005643 "nuclear pore" evidence=IEA
GO:0046907 "intracellular transport" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2093372 AT3G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278271 DDB_G0278271 "Ran-binding protein 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0039110 RanBP3 "Ran binding protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPCC18B5.07c nup61 "nucleoporin Nup61" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000004916 AN10754 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F5H4C2 RANBP3 "Ran-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6Z4 RANBP3 "Ran-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PS48 RANBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1627 zgc:66385 "zgc:66385" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I000474
hypothetical protein (469 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
cd13169112 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, 6e-53
cd00835111 cd00835, RanBD_family, Ran-binding domain 2e-25
smart00160130 smart00160, RanBD, Ran-binding domain 8e-22
cd13170109 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d 2e-16
cd13173110 cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr 2e-15
pfam00638122 pfam00638, Ran_BP1, RanBP1 domain 3e-15
cd13176116 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin 2e-14
pfam0891166 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa) 4e-13
cd13180113 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-b 1e-12
cd13171112 cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr 2e-12
cd13174113 cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr 3e-12
cd13179126 cd13179, RanBD_RanBP1, Ran-binding domain 2e-11
cd13172113 cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr 4e-11
cd13177117 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr 2e-09
cd13181111 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom 4e-07
cd13178117 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr 1e-06
COG5171211 COG5171, YRB1, Ran GTPase-activating protein (Ran- 2e-05
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 0.004
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1 Back     alignment and domain information 
 Score =  171 bits (436), Expect = 6e-53
 Identities = 72/108 (66%), Positives = 90/108 (83%), Gaps = 3/108 (2%)

Query: 309 EKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPD 368
           EK VFS D  LFEF+ G WKERG+GEL+VN+ST  TG+ARL+MRA+GNYRL+LNA+L+PD
Sbjct: 1   EKAVFSGDGALFEFITGGWKERGRGELRVNLST--TGKARLVMRAKGNYRLLLNANLFPD 58

Query: 369 MKLTN-MDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415
           MKLT  M  KG+TFAC+N+A   K+GLSTFALKF+D ++VEEF+ AV 
Sbjct: 59  MKLTKMMGGKGVTFACVNAAAGAKAGLSTFALKFKDPAVVEEFRAAVE 106

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy. Length = 112
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain Back     alignment and domain information
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3 Back     alignment and domain information
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain Back     alignment and domain information
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3 Back     alignment and domain information
>gnl|CDD|220068 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa) Back     alignment and domain information
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1 Back     alignment and domain information
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4 Back     alignment and domain information
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2 Back     alignment and domain information
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 Back     alignment and domain information
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4 Back     alignment and domain information
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 100.0
smart00160130 RanBD Ran-binding domain. Domain of apporximately 100.0
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 99.98
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 99.95
KOG2724487 consensus Nuclear pore complex component NPAP60L/N 99.86
KOG0864215 consensus Ran-binding protein RANBP1 and related R 99.63
PF0891172 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR01 99.62
KOG0866327 consensus Ran-binding protein RANBP3 [Intracellula 99.19
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 99.13
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 98.48
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 98.32
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 98.05
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 97.44
KOG2724487 consensus Nuclear pore complex component NPAP60L/N 96.97
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 92.31
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 91.67
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 84.58
KOG4590 409 consensus Signal transduction protein Enabled, con 82.75
KOG3671 569 consensus Actin regulatory protein (Wiskott-Aldric 82.0
>cd00835 RanBD Ran-binding domain Back     alignment and domain information 
Probab=100.00  E-value=3e-34  Score=247.73  Aligned_cols=114  Identities=43%  Similarity=0.718  Sum_probs=106.1

Q ss_pred             cccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC--
Q 014916          300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD--  375 (416)
Q Consensus       300 Vev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d--  375 (416)
                      |+|.||||+|++||++|||||+|++  ++|+|||+|+||||++++ ++++|||||+++++||||||+|+++|+++++.  
T Consensus         1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~-~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~   79 (122)
T cd00835           1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKD-TGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNS   79 (122)
T ss_pred             CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCC-CCcEEEEEEeCCccEEEEeeEecCCcEEeecCCC
Confidence            5799999999999999999999987  899999999999999986 89999999999999999999999999999987  


Q ss_pred             CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916          376 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA  415 (416)
Q Consensus       376 kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE  415 (416)
                      .++|+|+|++. .++++++++|+|||+++++|++|+.+|+
T Consensus        80 ~k~~~~~~~d~-~~~~~~~~~~~lrfk~~~~a~~f~~~~~  118 (122)
T cd00835          80 DKSIVWAAMDF-SDDEPKPETFAIRFKTEEIADEFKEAIE  118 (122)
T ss_pred             CcEEEEEeeec-CCCCCcEEEEEEEECCHHHHHHHHHHHH
Confidence            79999998864 4445779999999999999999999986

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex Back     alignment and domain information
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2crf_A150 Solution Structure Of The Ran_bp1 Domain Of Ran-Bin 6e-10
3m1i_B191 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 8e-09
4gpt_B140 Crystal Structure Of Kpt251 In Complex With Crm1-ra 2e-08
4hat_B140 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 5e-08
4gmx_B141 Crystal Structure Of Kpt185 In Complex With Crm1-Ra 5e-08
2y8f_A138 Structure Of The Ran-Binding Domain From Human Ranb 7e-08
1xke_A130 Solution Structure Of The Second Ran-Binding Domain 4e-07
1rrp_B134 Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 1e-06
2y8g_A138 Structure Of The Ran-Binding Domain From Human Ranb 2e-06
1k5d_B201 Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl 4e-05
3n7c_A130 Crystal Structure Of The Ran Binding Domain From Th 8e-05
3oan_A130 Crystal Structure Of The Ran Binding Domain From Th 9e-05
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding Protein-3 Length = 150 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 286 ASKSEGTTFPSMQEVV-VETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VS 340
           +S S GT    + E V V TGEE E  V      LF F     SW ERG+G L++N   S
Sbjct: 2   SSGSSGTARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAS 61
Query: 341 TN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 390
           T+  T ++RL+MR +G+ RLILN  L+  M++    +K I    +++  +G
Sbjct: 62  TDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQG 112
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191 Back     alignment and structure
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141 Back     alignment and structure
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (Wild Type) Length = 138 Back     alignment and structure
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130 Back     alignment and structure
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134 Back     alignment and structure
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (E352a-R353v Double Mutant) Length = 138 Back     alignment and structure
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201 Back     alignment and structure
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 4e-26
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 4e-26
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 2e-23
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 3e-23
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 2e-22
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 4e-19
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 8e-16
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 8e-16
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 3e-05
2c1m_B46 Nucleoporin 50 kDa; protein transport/membrane pro 4e-05
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure
 Score =  101 bits (253), Expect = 4e-26
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 298 QEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTN---ATGRARLLMR 352
            +V V TGEE E  V      LF F     SW   G+G L++N   +    T ++RL+MR
Sbjct: 3   MKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMR 62

Query: 353 ARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQT 412
            +G+ RLILN  L+  M++    +K I    +++  +   G+  F +        + +  
Sbjct: 63  TQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQ---GVKVFLISASSKDTGQLYAA 119
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130 Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Length = 112 Back     alignment and structure
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} Length = 46 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 100.0
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 100.0
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 100.0
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 100.0
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 100.0
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 100.0
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 100.0
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 100.0
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 100.0
2c1m_B46 Nucleoporin 50 kDa; protein transport/membrane pro 99.47
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 99.42
1un0_C51 Nucleoporin NUP2; nuclear import, armadillo repeat 99.41
3tj3_C114 Nuclear pore complex protein NUP50; armadillo repe 99.32
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 99.0
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 98.88
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 98.64
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 98.63
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 98.43
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 98.35
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 97.52
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 96.58
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 96.31
2oqb_A117 Histone-arginine methyltransferase CARM1; protein 84.1
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
Probab=100.00  E-value=1e-36  Score=270.30  Aligned_cols=119  Identities=29%  Similarity=0.533  Sum_probs=101.7

Q ss_pred             CCcccccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecc
Q 014916          296 SMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN  373 (416)
Q Consensus       296 ~l~eVev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~  373 (416)
                      .|++|++.||||+|++||++|||||+|+  +++|+|||+|+||||+|++ ++++|||||+|+++||||||+|+++|++++
T Consensus         9 ~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~-~~k~RllmR~d~~~kv~lN~~i~~~m~~~~   87 (140)
T 4hat_B            9 HLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLKP   87 (140)
T ss_dssp             ----------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCBC
T ss_pred             EcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCC-CCeEEEEEEecCcceEEEEeEecCCeEEeE
Confidence            4689999999999999999999999997  4789999999999999986 899999999999999999999999999998


Q ss_pred             c--CCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916          374 M--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA  415 (416)
Q Consensus       374 ~--dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE  415 (416)
                      +  ++++|+|+|..+++|+++++++|+|||++++.|++|+++|+
T Consensus        88 ~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~e  131 (140)
T 4hat_B           88 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFE  131 (140)
T ss_dssp             CTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence            7  35789999877777877889999999999999999999986
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C Back     alignment and structure
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens} Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 4e-27
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 9e-26
d1k5db_146 b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human 3e-25
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 2e-20
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 2e-09
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 9e-09
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 4e-27
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTN---ATGRARLLM 351
           +++V V TGEE E  V      LF F     SW ERG+G L++N   +    T ++RL+M
Sbjct: 7   LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 66

Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
           R +G+ RLILN  L+  M++    +K I    +++  +   G+  F +        + + 
Sbjct: 67  RTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ---GVKVFLISASSKDTGQLYA 123

Query: 412 TAV 414
              
Sbjct: 124 ALH 126
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 100.0
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 100.0
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 99.97
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 99.96
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 99.89
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 99.88
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 98.79
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 98.19
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 97.64
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=253.01  Aligned_cols=122  Identities=28%  Similarity=0.496  Sum_probs=111.1

Q ss_pred             CCCCCCcccccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCc
Q 014916          292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDM  369 (416)
Q Consensus       292 ~~~P~l~eVev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~M  369 (416)
                      |.+|.+++|++.||||+|++||++|||||+|+  +++|++||+|+||||++++ ++++|||||++++++|||||.|+++|
T Consensus         4 p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGvG~lkil~~~~-t~~~RlvmR~d~~~kv~lN~~i~~~~   82 (134)
T d1rrpb_           4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKT-SGKIRLLMRREQVLKICANHYISPDM   82 (134)
T ss_dssp             CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESS-SCCCEEEEECTTTCCEEECCBCCSSC
T ss_pred             CcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeEEEEEEEEcCC-CCcEEEEEEEcCCCcEEEEEEECCCc
Confidence            56776678999999999999999999999997  5799999999999999986 89999999999999999999999999


Q ss_pred             eecccC--CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916          370 KLTNMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA  415 (416)
Q Consensus       370 kv~~~d--kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE  415 (416)
                      +++.+.  .+.|+|+|.+. +++..++.+|+|||+++++|++|+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~d~-~~~~~k~~~~~lrfk~~e~a~~f~~~~~  129 (134)
T d1rrpb_          83 KLTPNAGSDRSFVWHALDY-ADELPKPEQLAIRFKTPEEAALFKCKFE  129 (134)
T ss_dssp             CCBCSTTCTTEEEEEEEEC-TTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred             EEeecCCCceEEEEEeecc-CCCCCcEEEEEEEECCHHHHHHHHHHHH
Confidence            999753  56799998764 5667889999999999999999999985
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure