Citrus Sinensis ID: 014920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcHHccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHcHHHHHccccccccHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcEEccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccHHHHHHHHHHccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccHHHHcccccccccccHHHccHHccccccccccccccccccccHHcHHHHHHHcccccEEccccHHHHHHHHHHHcHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcEEccccccHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHccccccccHHHEEEccccccc
Coil and Loop (DISEMBL)
MDLLKQELLRKRQGlaeetggrrvfkrSEIEQKQIQKLREQEKREQEAKLLRqnnshnstassansnsvssartttattasgasatatktltneqnidnlnlpkQEVIRRLRLLKqpitlfgeddDARLERLKYVLKAGLfevdsdmtegqtNDFLRDIVELRKRQktgilserkrkdreegggedgeggggdeelsadggssgvdmDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLfkfcrkkvlpDDIRQALMLMVNCCMKRDYLAAMDHYIRLAignapwpigvTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCqrryptmpskavefnslangsdLQSLLAEEtisgsnqsseerlrlmpapkes
Flexible Loop (DISEMBL)
mdllkqellrkrqglaeetggrrvfkrseieqKQIQKLREQEKREQEAKLlrqnnshnstassansnsvssaRTTTAttasgasatatktltneqnidnlnlpkqEVIRRLRLLKQpitlfgedddarLERLKYVLKAGLfevdsdmtegqtndFLRDIVElrkrqktgilserkrkdreegggedgeggggdeelsadggssgvDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEEtisgsnqsseerlrlmpapkes
Low Complexity Region (SEG)
MDLLKQELLRKRQGLAEETGGRRVFKRSeieqkqiqklreqekreqeaklLRQnnshnstassansnsvssartttattasgasatatktltNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDReegggedgeggggdeelsadggssgVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES
Disordered region (IsUnstruct)
****************************************************************************************************NLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVE*******************************************************NFDELCEEDKILVFFKRLLNEWNQ*****************MVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPT**********************************************
Disordered Region (DISOPRED)
MDLLKQE*************************************************************************************************QEVIRRLRLLKQPITLFGEDDDARLERLK**************************************************************************************ELCEEDKILVFFKRLLNEWNQELNEM*********GKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHE**************IMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNS*****************************MP*****
Disordered Region (DISEMBL)
MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQN*******************************TATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSE*****************************SGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEM************MVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE**********************
Disordered Region (DISPRO)
MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQE***************************************************NLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILS*********************************DMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETI********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLLKQELLRKRQGLAEETGGRRVFKRxxxxxxxxxxxxxxxxxxxxxKLLRQNNSHNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q99633	342	Pre-mRNA-splicing factor	yes	no	0.75	0.912	0.360	1e-53
Q5RE03	342	Pre-mRNA-splicing factor	yes	no	0.75	0.912	0.360	1e-53
Q8BM39	342	Pre-mRNA-splicing factor	yes	no	0.75	0.912	0.360	4e-53
Q9JKB8	342	Pre-mRNA-splicing factor	yes	no	0.75	0.912	0.357	4e-53
Q2HJ41	342	Pre-mRNA-splicing factor	yes	no	0.75	0.912	0.357	4e-53
Q6GMH0	342	Pre-mRNA-splicing factor	yes	no	0.814	0.991	0.338	6e-51
Q5EAV6	342	Pre-mRNA-splicing factor	N/A	no	0.807	0.982	0.351	2e-49
O94406	343	Pre-mRNA-splicing factor	yes	no	0.293	0.355	0.353	5e-24
P33411	251	Pre-mRNA-splicing factor	yes	no	0.197	0.326	0.433	7e-12

>sp|Q99633|PRP18_HUMAN Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)

Query: 1   MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
           MD+LK E+LRKRQ L E+       ++ FKRSE+            K+E+EA   R    
Sbjct: 1   MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46

Query: 57  HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +       +   ++S+        +      T             L +QEVIRRLR   +
Sbjct: 47  YKIQPKEEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93

Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
           PI LFGE D    +RL+ +              LKA L ++D          +L +IV  
Sbjct: 94  PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143

Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
                              GG E GE    +           EEL A G S G  D  KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184

Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
           +             D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL 
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231

Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
           PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291

Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           + REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.
Homo sapiens (taxid: 9606)

>sp|Q5RE03|PRP18_PONAB Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)

Query: 1   MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
           MD+LK E+LRKRQ L E+       ++ FKRSE+            K+E+EA   R    
Sbjct: 1   MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46

Query: 57  HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +       +   ++S+        +      T             L +QEVIRRLR   +
Sbjct: 47  YRIQPKEEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93

Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
           PI LFGE D    +RL+ +              LKA L ++D          +L +IV  
Sbjct: 94  PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143

Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
                              GG E GE    +           EEL A G S G  D  KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184

Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
           +             D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL 
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231

Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
           PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291

Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           + REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q8BM39|PRP18_MOUSE Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prpf18 PE=1 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)

Query: 1   MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
           MD+LK E+LRKRQ L E+       ++ FKRSE+ +K           E+EA   R    
Sbjct: 1   MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELARK-----------EEEAYYER--CG 46

Query: 57  HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +       +   ++S+        +      T             L +QEVIRRLR   +
Sbjct: 47  YKIQPKEDDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93

Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
           PI LFGE D    +RL+ +              LKA L ++D          +L +IV  
Sbjct: 94  PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143

Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
                              GG E GE    +           EEL A G S G  D  KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184

Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
           +             D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL 
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231

Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
           PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291

Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           + REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9JKB8|PRP18_RAT Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 203/411 (49%), Gaps = 99/411 (24%)

Query: 1   MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
           MD+LK E+LRKRQ L E+       ++ FKRSE+            K+E+EA   R    
Sbjct: 1   MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46

Query: 57  HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +       +   ++S+        +      T             L +QEVIRRLR   +
Sbjct: 47  YKVQPKEDDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93

Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
           P+ LFGE D    +RL+ +              LKA L ++D          +L +IV  
Sbjct: 94  PMRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143

Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
                              GG E GE    +           EEL A G S G  D  KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184

Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
           +             D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL 
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLR 231

Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
           PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291

Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           + REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing (By similarity). Down-regulates the expression of potassium channel subunits.

Rattus norvegicus (taxid: 10116)

>sp|Q2HJ41|PRP18_BOVIN Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 203/411 (49%), Gaps = 99/411 (24%)

Query: 1   MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
           MD+LK E+LRKRQ L E+       ++ FKRSE+            K+E+EA   R    
Sbjct: 1   MDVLKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46

Query: 57  HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +       +   ++S+        +      T             L +QEVIRRLR   +
Sbjct: 47  YKIQPKDEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93

Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
           PI LFGE D    +RL+ +              LKA L ++D          +L ++V  
Sbjct: 94  PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNELV-- 143

Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
                              GG E GE    +           EEL A G S G  D  KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184

Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
           +             D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL 
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231

Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
           PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291

Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           + REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 202/384 (52%), Gaps = 45/384 (11%)

Query: 1   MDLLKQELLRKRQGLAEE---TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSH 57
           MD+LK E+ RKR+ + E+      ++ FKR+E+ +K+     E   R    K+   +   
Sbjct: 1   MDILKAEIARKRKLIEEKELIDDSKKYFKRAELARKE----EEDYYRRCGYKM---DKPE 53

Query: 58  NSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQP 117
                S ++N V     T                        + L +QEVIRRLR   +P
Sbjct: 54  EEAPQSTSANPVLELELTEEKLP-------------------MTLSRQEVIRRLRERGEP 94

Query: 118 ITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRK 177
           I LFGE D    +RL+ +          ++ +G  ND    + ++ ++    I+      
Sbjct: 95  IRLFGESDYDAFQRLRKIEILA-----PEVNKGLRNDLKAAMDKIDQQYLNEIV------ 143

Query: 178 DREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNE 237
                GG +G       +L     ++ ++  + L     N +++ + D I    + LL  
Sbjct: 144 -----GGAEGAELDTQHDLKVHEENTTIEELEALGASLGNGNDVRDMDIINKVLRFLLGV 198

Query: 238 WNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCM 297
           W ++LN   +  KR+ +GK   AT KQ   YL PLF+  RKK LP DI++++  ++   +
Sbjct: 199 WAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFML 258

Query: 298 KRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSV 357
           +R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +
Sbjct: 259 EREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGL 318

Query: 358 KRLMTFCQRRYPTMPSKAVEFNSL 381
           KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 319 KRLMTICQKHFPTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q5EAV6|PRP18_XENLA Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=prpf18 PE=2 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 206/387 (53%), Gaps = 51/387 (13%)

Query: 1   MDLLKQELLRKRQGLAEET---GGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSH 57
           MD+LK E+ RKR+ L E+    G ++ FKRSE+  K+ ++  E+          +     
Sbjct: 1   MDILKAEIARKRKQLEEKALVGGEKKYFKRSELTAKEKEEYFERCG-------YKMQKEE 53

Query: 58  NSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQP 117
                S++SN V                              + L +QEVIRRLR   +P
Sbjct: 54  EEEKPSSSSNPVLELELAEEKLP-------------------MTLSRQEVIRRLRERGEP 94

Query: 118 ITLFGEDDDARLERLKYVLKAGLFEV-DSDMTEGQTNDFLRDIVELRKRQKTGILSERKR 176
           I LFGE D    +RL+ +      E+   ++ +G  ND    + ++ ++    +++ ++ 
Sbjct: 95  IRLFGETDYETFQRLRKI------EILAPEVNKGLRNDLKAALDKIDQQYFNELVAGQET 148

Query: 177 KDRE-EGGGEDGEGGGGDEELSADGGSSGV-DMDKDLKRMKANFDELCEEDKILVFFKRL 234
            D + +   +  E     EEL   G   G  D +KD+  +          +K+L F   L
Sbjct: 149 TDEDTQNDLKVHEENTTIEELEVLGECLGQGDDNKDMDTI----------NKVLKF---L 195

Query: 235 LNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVN 294
           L  W +ELN   +  KR+  GK   AT KQ   YL PLF+  RKK LP DI++++  ++ 
Sbjct: 196 LGVWAKELNAREDYVKRSVHGKLASATQKQTESYLKPLFRKLRKKNLPADIKESITDIIK 255

Query: 295 CCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 354
             ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+
Sbjct: 256 FMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYI 315

Query: 355 QSVKRLMTFCQRRYPTMPSKAVEFNSL 381
           Q +KRLMT CQ+ + T PSK VE+N+L
Sbjct: 316 QGLKRLMTICQKYFSTDPSKCVEYNAL 342

Participates in the second step of pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|O94406|PRP18_SCHPO Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp18 PE=3 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 88/147 (59%)

Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
           +++ F +  +  W+  L+        +++ +  +  F+Q  + L+ L +    + L DDI
Sbjct: 193 QVVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDI 252

Query: 286 RQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIM 345
            +++  +   C K +++ A D Y+RL IGNAPWPIGVTMVGIHERSA +++  N  ++I+
Sbjct: 253 FKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNIL 312

Query: 346 NDETTRKYLQSVKRLMTFCQRRYPTMP 372
            DE  RK LQ++KR +TF +R    +P
Sbjct: 313 KDEKKRKCLQALKRFITFQERESSNLP 339

Participates in the second step of pre-mRNA splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33411|PRP18_YEAST Pre-mRNA-splicing factor 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP18 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 282 PDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN-S 340
           PD +     ++ +    ++   A+  Y++L+IGN  WPIGVT VGIH RSA  KI    +
Sbjct: 157 PDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRN 216

Query: 341 VAHIMNDETTRKYLQSVKRLMTF 363
            A+IM DE TR ++ S+KRL+TF
Sbjct: 217 AANIMIDERTRLWITSIKRLITF 239

Component of the U4/U5/U6 snRNP, binding principally to the u5 snRNP. It is not absolutely required for the second step of pre-mRNA splicing at low temperatures but is required at higher temperatures. It may stabilize a particular conformation of the U5 snRNP or orient the U5 snRNP within the U4/U5/U6 snRNP or within the spliceosome.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
356504933	413	PREDICTED: pre-mRNA-splicing factor 18-l	0.990	0.997	0.791	0.0
356572194	411	PREDICTED: pre-mRNA-splicing factor 18-l	0.985	0.997	0.787	0.0
449458490	420	PREDICTED: pre-mRNA-splicing factor 18-l	0.997	0.988	0.798	0.0
255559412	417	potassium channel regulatory factor, put	1.0	0.997	0.810	0.0
225437026	412	PREDICTED: pre-mRNA-splicing factor 18-l	0.990	1.0	0.800	1e-174
224085475	420	predicted protein [Populus trichocarpa]	1.0	0.990	0.802	1e-173
297848536	417	splicing factor Prp18 family protein [Ar	0.990	0.988	0.695	1e-157
18379060	420	splicing factor Prp18-like protein [Arab	0.990	0.980	0.686	1e-157
413918959	387	hypothetical protein ZEAMMB73_476784 [Ze	0.918	0.987	0.640	1e-140
413918954	387	hypothetical protein ZEAMMB73_832665 [Ze	0.908	0.976	0.620	1e-139

>gi|356504933|ref|XP_003521247.1| PREDICTED: pre-mRNA-splicing factor 18-like [Glycine max]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/417 (79%), Positives = 370/417 (88%), Gaps = 5/417 (1%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA++TGG++ FKRSEI+QK+IQKLREQEKRE EAK    +    +T
Sbjct: 1   MDLLKQELLKKRQSLAQDTGGKKFFKRSEIQQKEIQKLREQEKRELEAK----SQKRLAT 56

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
           +S   + + SS+ T +A+ +S  ++++  +LTNEQNIDNL LPK EVIRRLR LKQP+TL
Sbjct: 57  SSDNAATAPSSSSTASASASSTIASSSAASLTNEQNIDNLVLPKPEVIRRLRFLKQPVTL 116

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE 180
           FGEDDDARL+RLKYVLKAG+FEVDSDMTEGQTNDFLRDI ELRKRQKTGIL ERKR+  +
Sbjct: 117 FGEDDDARLDRLKYVLKAGVFEVDSDMTEGQTNDFLRDIAELRKRQKTGILGERKRQKAD 176

Query: 181 EGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQ 240
           +G  ED EGG GD++LS  GGS G D DKDLKRMKANF+ELC+EDKILVFFK+LLNEW Q
Sbjct: 177 DGAAEDREGGAGDDDLSDCGGSDGADADKDLKRMKANFEELCDEDKILVFFKKLLNEWKQ 236

Query: 241 ELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRD 300
           EL EMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQAL+LMV CCM+RD
Sbjct: 237 ELREMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALLLMVECCMRRD 296

Query: 301 YLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 360
           YLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL
Sbjct: 297 YLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 356

Query: 361 MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQ-SSEERLRLMPAPKES 416
           MTFCQRRYPT+PSKAVEFNSLANGSDL SLLAEE  SG NQ +SEERLR+MPAP++S
Sbjct: 357 MTFCQRRYPTLPSKAVEFNSLANGSDLHSLLAEERFSGGNQAASEERLRIMPAPRDS 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572194|ref|XP_003554255.1| PREDICTED: pre-mRNA-splicing factor 18-like [Glycine max]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/415 (78%), Positives = 368/415 (88%), Gaps = 5/415 (1%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA++TGG++ FKRSEI+QK+IQKLR+QEKRE EAK L++       
Sbjct: 1   MDLLKQELLKKRQSLAQDTGGKKFFKRSEIQQKEIQKLRQQEKRELEAKSLKR-----LA 55

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
            SS  + +  S+ +T +++AS   A+A+ +LT+EQNIDNL LPK EVIRRLR LKQP+TL
Sbjct: 56  TSSDTAATAPSSSSTASSSASSTIASASASLTDEQNIDNLVLPKPEVIRRLRFLKQPVTL 115

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE 180
           FGEDDDARL+RLKYVLKAG+FEVDSDMTEGQTNDFLRDI ELRKRQKTGIL ERKR+  +
Sbjct: 116 FGEDDDARLDRLKYVLKAGVFEVDSDMTEGQTNDFLRDIAELRKRQKTGILGERKRQKAD 175

Query: 181 EGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQ 240
           +G  +D EGG GD++LS  G S G + DKDLKRMKANF+ELC+EDKILVFFK+LLNEW Q
Sbjct: 176 DGAAQDREGGAGDDDLSDCGSSEGAEADKDLKRMKANFEELCDEDKILVFFKKLLNEWKQ 235

Query: 241 ELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRD 300
           EL EMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQAL+LMV CCMKRD
Sbjct: 236 ELREMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALLLMVECCMKRD 295

Query: 301 YLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 360
           YLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL
Sbjct: 296 YLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 355

Query: 361 MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKE 415
           MTFCQRRYPT+PSKAVEFNSLANGSDL SLLAEE  SG NQ+SEERLR+MPAP++
Sbjct: 356 MTFCQRRYPTLPSKAVEFNSLANGSDLHSLLAEERFSGGNQASEERLRIMPAPRD 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458490|ref|XP_004146980.1| PREDICTED: pre-mRNA-splicing factor 18-like [Cucumis sativus] gi|449491488|ref|XP_004158914.1| PREDICTED: pre-mRNA-splicing factor 18-like [Cucumis sativus]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/421 (79%), Positives = 381/421 (90%), Gaps = 6/421 (1%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA ETGG+RVFKRSEIEQ+QIQ+LRE+EKRE EAK LRQ+ +  + 
Sbjct: 1   MDLLKQELLKKRQALATETGGKRVFKRSEIEQRQIQQLREKEKRELEAKALRQSTTSATA 60

Query: 61  A----SSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           A    +S+ SN ++SA TT+++ A+ ++ T +K+LT+EQNIDNL LP+QEVIRRLR LKQ
Sbjct: 61  AEAVSTSSKSNPLASASTTSSSVATNSTTTTSKSLTDEQNIDNLVLPRQEVIRRLRFLKQ 120

Query: 117 PITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKR 176
           PITLFGEDDDARL+RLK+VLKAGLFEVDSD+TEGQTNDFLRDI ELRKRQKTGILSERKR
Sbjct: 121 PITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGILSERKR 180

Query: 177 KDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLN 236
           + ++E G  +   GGG +E SADGGSSGV+ DKDLKRMKANFDELCEEDKILVFFKRLLN
Sbjct: 181 Q-KKEDGAGEEGDGGGADEESADGGSSGVETDKDLKRMKANFDELCEEDKILVFFKRLLN 239

Query: 237 EWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCC 296
           EW QEL+EMPEAEKRTAKGKSMVATFKQCARYL+PLFKFCRKKVLPDDIRQAL+++V CC
Sbjct: 240 EWKQELDEMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECC 299

Query: 297 MKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS 356
           MKRDYLAAMD YI++AIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS
Sbjct: 300 MKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS 359

Query: 357 VKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQ-SSEERLRLMPAPKE 415
           +KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE +SG  +  S+ERLR+MPAP++
Sbjct: 360 IKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVSGGGKLGSDERLRIMPAPED 419

Query: 416 S 416
           S
Sbjct: 420 S 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559412|ref|XP_002520726.1| potassium channel regulatory factor, putative [Ricinus communis] gi|223540111|gb|EEF41688.1| potassium channel regulatory factor, putative [Ricinus communis]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/417 (81%), Positives = 379/417 (90%), Gaps = 1/417 (0%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA++TGG+RVFKRSEI+QK+IQKLREQEK+E EAK  RQ++S  + 
Sbjct: 1   MDLLKQELLKKRQSLAQDTGGKRVFKRSEIQQKEIQKLREQEKQELEAKAKRQSSSTETA 60

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
            ++ +++S ++  +TT TT + A+AT +K+LTNEQNIDNL LPKQEVIRRLR LKQPITL
Sbjct: 61  TTTTSTSSTANTPSTTTTTTTSAAATTSKSLTNEQNIDNLILPKQEVIRRLRFLKQPITL 120

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE 180
           FGEDDDARL+RLK+VLKAG+FEVDSDMTEGQTNDFLRDI ELRKRQK+GI+SERKRKDRE
Sbjct: 121 FGEDDDARLDRLKHVLKAGIFEVDSDMTEGQTNDFLRDIAELRKRQKSGIVSERKRKDRE 180

Query: 181 EGGGEDGEGGGGDEELSADGGSSG-VDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWN 239
           EG GEDGEGG G+ E+S DG SSG VD DKDLKRMKANF+ELC+EDKILVFFKRLL EW 
Sbjct: 181 EGAGEDGEGGEGEREMSGDGDSSGGVDADKDLKRMKANFEELCDEDKILVFFKRLLIEWK 240

Query: 240 QELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKR 299
           QEL+EM EAEKRTAKGKSMVATFKQCARYL+PLFKFCRKKVLPDDIRQAL+++V CCMKR
Sbjct: 241 QELDEMAEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALLVVVECCMKR 300

Query: 300 DYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKR 359
           DYLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKR
Sbjct: 301 DYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKR 360

Query: 360 LMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES 416
           LMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE +   NQ SE RL+LM  P+E+
Sbjct: 361 LMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVHSGNQPSEGRLQLMAGPEEN 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437026|ref|XP_002278267.1| PREDICTED: pre-mRNA-splicing factor 18-like [Vitis vinifera]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 333/416 (80%), Positives = 365/416 (87%), Gaps = 4/416 (0%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA+E GG+R FKRSEIEQ+ IQKLREQEKRE EAK LR NN   S+
Sbjct: 1   MDLLKQELLKKRQSLAQEAGGKRFFKRSEIEQRNIQKLREQEKRELEAKALRHNNGTASS 60

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
           +++A +++ S+  +      + +S   +K +T+EQ ID + LPKQEVIRRLR LKQPITL
Sbjct: 61  STAAAASATSTPSSDAKPDLTSSS---SKAITDEQKIDEMVLPKQEVIRRLRFLKQPITL 117

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE 180
           FGEDD ARL+RLKYVLKAG+FEVDSDMTEGQTNDFLRDI ELRKRQKTGILS+RKRK   
Sbjct: 118 FGEDDTARLDRLKYVLKAGIFEVDSDMTEGQTNDFLRDIAELRKRQKTGILSDRKRKS-P 176

Query: 181 EGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQ 240
           E G EDGEGGGGD++LS DGGSSGVD DKDLKRMKANF+ELC+EDKILVFFKRLL EWNQ
Sbjct: 177 EDGVEDGEGGGGDDDLSGDGGSSGVDADKDLKRMKANFEELCDEDKILVFFKRLLIEWNQ 236

Query: 241 ELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRD 300
           ELNE  E EKRTAKGKSMVATFKQCARYLNPLFKFCRKKVL DDIRQAL+++V CCMKRD
Sbjct: 237 ELNEKQEGEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLQDDIRQALLVVVECCMKRD 296

Query: 301 YLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 360
           YLAAMD YI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS+KRL
Sbjct: 297 YLAAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRL 356

Query: 361 MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES 416
           MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE  SG NQ+SEERL LM  PKES
Sbjct: 357 MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFSGGNQASEERLHLMAPPKES 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085475|ref|XP_002307588.1| predicted protein [Populus trichocarpa] gi|222857037|gb|EEE94584.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 337/420 (80%), Positives = 368/420 (87%), Gaps = 4/420 (0%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLKQELL+KRQ LA++TGG++ FKRSEI+QK+IQKLREQEKRE EAK  RQ++S + T
Sbjct: 1   MDLLKQELLKKRQTLAQDTGGKKFFKRSEIQQKEIQKLREQEKRELEAKSKRQSSSSSIT 60

Query: 61  ASSANSNSVSSARTTTATTASGASATAT----KTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
           +SS  +   SS   +TATT +  ++++T    K LT EQNIDNL LPKQEVIRR R LKQ
Sbjct: 61  SSSTTTTPNSSVAASTATTTTTKNSSSTATTSKPLTVEQNIDNLVLPKQEVIRRFRFLKQ 120

Query: 117 PITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKR 176
           PITLFGEDDDARL+RLKYVLKAGLFEVDSDMTEGQTNDFLRDI ELRKRQK+GI+S RKR
Sbjct: 121 PITLFGEDDDARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKSGIVSGRKR 180

Query: 177 KDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLN 236
           KDRE+GGGEDGEGG GD EL  + G+ G D D D KRMKANF+ELCEEDKILVFFKRLLN
Sbjct: 181 KDREDGGGEDGEGGEGDGELGGECGAGGGDNDLDSKRMKANFEELCEEDKILVFFKRLLN 240

Query: 237 EWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCC 296
           EWNQEL+EM EAEKRTAKGKSMVATFKQCARYLNPLF F RKK+LP DIRQ L+LMV CC
Sbjct: 241 EWNQELDEMAEAEKRTAKGKSMVATFKQCARYLNPLFDFSRKKILPSDIRQGLLLMVECC 300

Query: 297 MKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS 356
           M+RDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS
Sbjct: 301 MRRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS 360

Query: 357 VKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES 416
           VKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE +   NQ SE RLRLMPAP E+
Sbjct: 361 VKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVFDGNQPSEGRLRLMPAPDEN 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848536|ref|XP_002892149.1| splicing factor Prp18 family protein [Arabidopsis lyrata subsp. lyrata] gi|297337991|gb|EFH68408.1| splicing factor Prp18 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/421 (69%), Positives = 349/421 (82%), Gaps = 9/421 (2%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNS- 59
           MDLL++E+L+KR+ LAEE+GG++ FKRSEIEQK+IQKLRE+E+RE E K  R+  S    
Sbjct: 1   MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAASGGDG 60

Query: 60  --TASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQP 117
             + S+  S++ S++ ++ ++ +  A+   +K+LT+E    NL LP+QEVIRRLR LKQP
Sbjct: 61  KLSGSAPGSSNASASASSKSSASDAAAIADSKSLTDE----NLILPRQEVIRRLRFLKQP 116

Query: 118 ITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRK 177
           +TLFGEDD +RL+RLKYVLK GLFEVDSDMTEGQTNDFLRDI EL+KRQK+GI+ +RKRK
Sbjct: 117 MTLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGIMGDRKRK 176

Query: 178 DREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNE 237
            R+E   ++G+ G   E+  + G SS VD DKD+KR+KANF++LC+EDKILVF+K+LL E
Sbjct: 177 SRDERARDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKLLIE 236

Query: 238 WNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCM 297
           W QEL+ M   E+RTAKGK MVATFKQCARYL PLF  CRKK LP DIRQALM+MVN C+
Sbjct: 237 WKQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNYCI 296

Query: 298 KRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSV 357
           KRDYLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSV
Sbjct: 297 KRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSV 356

Query: 358 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQS--SEERLRLMPAPKE 415
           KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE   G ++   SEERLRLMP+  E
Sbjct: 357 KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGDRERVSEERLRLMPSQSE 416

Query: 416 S 416
           S
Sbjct: 417 S 417

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379060|ref|NP_563676.1| splicing factor Prp18-like protein [Arabidopsis thaliana] gi|4587563|gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gi|13430636|gb|AAK25940.1|AF360230_1 unknown protein [Arabidopsis thaliana] gi|15293173|gb|AAK93697.1| unknown protein [Arabidopsis thaliana] gi|332189414|gb|AEE27535.1| splicing factor Prp18-like protein [Arabidopsis thaliana]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/424 (68%), Positives = 346/424 (81%), Gaps = 12/424 (2%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQE------KREQEAKLLRQN 54
           MDLL++E+L+KR+ LAEE+GG++ FKRSEIEQK+IQKLRE+E      K ++ A      
Sbjct: 1   MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAAAAASG 60

Query: 55  NSHNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLL 114
               S+ S+  S++ +++ ++ ++ +  A+   +K LT+E    NL LP+QEVIRRLR L
Sbjct: 61  GDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDE----NLILPRQEVIRRLRFL 116

Query: 115 KQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSER 174
           KQP+TLFGEDD +RL+RLKYVLK GLFEVDSDMTEGQTNDFLRDI EL+KRQK+G++ +R
Sbjct: 117 KQPMTLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGMMGDR 176

Query: 175 KRKDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRL 234
           KRK R+E G ++G+ G   E+  + G SS VD DKD+KR+KANF++LC+EDKILVF+K+L
Sbjct: 177 KRKSRDERGRDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKL 236

Query: 235 LNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVN 294
           L EW QEL+ M   E+RTAKGK MVATFKQCARYL PLF  CRKK LP DIRQALM+MVN
Sbjct: 237 LIEWKQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVN 296

Query: 295 CCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 354
            C+KRDYLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL
Sbjct: 297 HCIKRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 356

Query: 355 QSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSN--QSSEERLRLMPA 412
           QSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE   G N  Q SEERLRLMP+
Sbjct: 357 QSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGNREQVSEERLRLMPS 416

Query: 413 PKES 416
             ES
Sbjct: 417 QSES 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918959|gb|AFW58891.1| hypothetical protein ZEAMMB73_476784 [Zea mays]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/412 (64%), Positives = 315/412 (76%), Gaps = 30/412 (7%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLK+EL +KR+    + GG+   +RSE+EQKQ+QK R  E R+  AK           
Sbjct: 1   MDLLKRELEKKRKAATADFGGKSFVRRSELEQKQLQK-RRDEHRQLLAK----------- 48

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
                            T+A  A++ A  T + E+ ID L+LP+ EV+RRLR+L++P+TL
Sbjct: 49  ---------------AGTSAPSANSAAAATGSEERRIDELDLPRHEVVRRLRVLREPVTL 93

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE 180
           FGEDDDARL R K VLK+G+ + D DMTEGQTNDFLRD++E+RKRQK G  +  K K + 
Sbjct: 94  FGEDDDARLARFKLVLKSGVID-DIDMTEGQTNDFLRDMIEMRKRQKAGRDTYAKGKSKR 152

Query: 181 EGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQ 240
             GG+ G  GG  ++  A G    VD DKD KRM+  F+ELC EDKILVFFK+LLNEWNQ
Sbjct: 153 VDGGDWGAAGGSADDGDAKGSGDDVDADKDSKRMRTKFEELCNEDKILVFFKKLLNEWNQ 212

Query: 241 ELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRD 300
           EL+EM E EKRTAKGKSMVATFKQCARYL+PLF+FCRKKVLPDDIR+AL+++V CCMKRD
Sbjct: 213 ELDEMTELEKRTAKGKSMVATFKQCARYLSPLFEFCRKKVLPDDIRRALLVIVECCMKRD 272

Query: 301 YLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL 360
           YLAAMD YI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS+KRL
Sbjct: 273 YLAAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRL 332

Query: 361 MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPA 412
           MT  QRRYP +PSK+VEFNSLANGSDLQ+LL+EE  +GS ++SEERLR MPA
Sbjct: 333 MTLSQRRYPALPSKSVEFNSLANGSDLQALLSEE--NGSAKASEERLRFMPA 382

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918954|gb|AFW58886.1| hypothetical protein ZEAMMB73_832665 [Zea mays]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/414 (62%), Positives = 310/414 (74%), Gaps = 36/414 (8%)

Query: 1   MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST 60
           MDLLK+EL +KR+    + GG+   +RSE+EQKQ+QK R  E R+  AK           
Sbjct: 1   MDLLKRELEKKRKAATADFGGKSFVRRSELEQKQLQK-RRDEHRQLLAK----------- 48

Query: 61  ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL 120
                            T+A  A++ A  T + E+ ID L+LP+ EV+RRLR+L++P+TL
Sbjct: 49  ---------------AGTSAPSANSAAAATGSEERRIDELDLPRHEVVRRLRVLREPVTL 93

Query: 121 FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTG--ILSERKRKD 178
           FGEDDDARL R K VLK+G+ + D DM EGQTNDFLRD++E+RKRQK G    ++ K K 
Sbjct: 94  FGEDDDARLARFKLVLKSGIID-DIDMIEGQTNDFLRDMIEMRKRQKAGRDTYAKGKSKR 152

Query: 179 REEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEW 238
            ++GG   G    GD    A G     + DKD KRM+  F+ELC EDKILVFFK+LLNEW
Sbjct: 153 VDDGGAAGGSADDGD----AKGSGDDANADKDSKRMRTKFEELCNEDKILVFFKKLLNEW 208

Query: 239 NQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK 298
           NQEL+EM E EKRTAKGKSMVATFKQCARYL+PLF+FCRKKVLP DIR+AL+++V CCMK
Sbjct: 209 NQELDEMTELEKRTAKGKSMVATFKQCARYLSPLFEFCRKKVLPHDIRRALLVIVECCMK 268

Query: 299 RDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK 358
           RDYLAAMD YI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQS+K
Sbjct: 269 RDYLAAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIK 328

Query: 359 RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPA 412
           RLMT  QRRYP +PSK+VEFNSL+NGSDLQ+LL+ E  +GS ++SEERLR MP+
Sbjct: 329 RLMTLSQRRYPALPSKSVEFNSLSNGSDLQALLSAE--NGSAKASEERLRFMPS 380

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2007589	420	AT1G03140 [Arabidopsis thalian	1.0	0.990	0.623	2.1e-132
UNIPROTKB|E1C1V4	342	PRPF18 "Uncharacterized protei	0.391	0.476	0.515	1.6e-54
UNIPROTKB|Q99633	342	PRPF18 "Pre-mRNA-splicing fact	0.391	0.476	0.515	5.4e-54
MGI|MGI:1914479	342	Prpf18 "PRP18 pre-mRNA process	0.391	0.476	0.515	5.4e-54
UNIPROTKB|Q2HJ41	342	PRPF18 "Pre-mRNA-splicing fact	0.391	0.476	0.515	6.9e-54
UNIPROTKB|E2RP50	342	PRPF18 "Uncharacterized protei	0.391	0.476	0.515	6.9e-54
RGD|708550	342	Prpf18 "PRP18 pre-mRNA process	0.391	0.476	0.515	8.7e-54
ZFIN|ZDB-GENE-040704-45	342	prpf18 "PRP18 pre-mRNA process	0.396	0.482	0.496	5.2e-52
DICTYBASE|DDB_G0274555	389	prp18 "putative RNA splicing f	0.629	0.673	0.409	6.7e-49
UNIPROTKB|E2RGL1	343	PRPF18 "Uncharacterized protei	0.391	0.475	0.515	1.1e-48

TAIR|locus:2007589 AT1G03140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 262/420 (62%), Positives = 297/420 (70%)

Query:     1 MDLLKQELLRKRQGLAEETGGRRVFKRSXXXXXXXXXXXXXXXXXXXXXXLRQXXXXXXX 60
             MDLL++E+L+KR+ LAEE+GG++ FKRS                       R+       
Sbjct:     1 MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAAAAASG 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEQNI--DNLNLPKQEVIRRLRLLKQPI 118
                                             + + +  +NL LP+QEVIRRLR LKQP+
Sbjct:    61 GDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDENLILPRQEVIRRLRFLKQPM 120

Query:   119 TLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKD 178
             TLFGEDD +RL+RLKYVLK GLFEVDSDMTEGQTNDFLRDI EL+KRQK+G++ +RKRK 
Sbjct:   121 TLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGMMGDRKRKS 180

Query:   179 RXXXXXXXXXXXXXXXXXXXXXXXXXVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEW 238
             R                         VD DKD+KR+KANF++LC+EDKILVF+K+LL EW
Sbjct:   181 RDERGRDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKLLIEW 240

Query:   239 NQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK 298
              QEL+ M   E+RTAKGK MVATFKQCARYL PLF  CRKK LP DIRQALM+MVN C+K
Sbjct:   241 KQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIK 300

Query:   299 RDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK 358
             RDYLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK
Sbjct:   301 RDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK 360

Query:   359 RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSN--QSSEERLRLMPAPKES 416
             RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE   G N  Q SEERLRLMP+  ES
Sbjct:   361 RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGNREQVSEERLRLMPSQSES 420

GO:0005634 "nucleus" evidence=ISM

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0008380 "RNA splicing" evidence=IEA;ISS

UNIPROTKB|E1C1V4 PRPF18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 443 (161.0 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
 Identities = 84/163 (51%), Positives = 115/163 (70%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR  +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHYDMDIITKFLKFLLGVWAKELNAREDYVKRGVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RTLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q99633 PRPF18 "Pre-mRNA-splicing factor 18" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

MGI|MGI:1914479 Prpf18 "PRP18 pre-mRNA processing factor 18 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 442 (160.7 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0019870 "potassium channel inhibitor activity" evidence=ISO

UNIPROTKB|Q2HJ41 PRPF18 "Pre-mRNA-splicing factor 18" [Bos taurus (taxid:9913)]

 Score = 442 (160.7 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0016607 "nuclear speck" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|E2RP50 PRPF18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 442 (160.7 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

RGD|708550 Prpf18 "PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   180 DDHKDMDIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0019870 "potassium channel inhibitor activity" evidence=IMP

ZFIN|ZDB-GENE-040704-45 prpf18 "PRP18 pre-mRNA processing factor 18 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 433 (157.5 bits), Expect = 5.2e-52, Sum P(3) = 5.2e-52
 Identities = 82/165 (49%), Positives = 117/165 (70%)

Query:   217 NFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFC 276
             N +++ + D I    + LL  W ++LN   +  KR+ +GK   AT KQ   YL PLF+  
Sbjct:   178 NGNDVRDMDIINKVLRFLLGVWAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKL 237

Query:   277 RKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKI 336
             RKK LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI
Sbjct:   238 RKKNLPADIKESITDIIKFMLEREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKI 297

Query:   337 YTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
             ++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   298 FSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

DICTYBASE|DDB_G0274555 prp18 "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 113/276 (40%), Positives = 162/276 (58%)

Query:   102 LPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDS-DMTEGQTNDFLRDIV 160
             LP   VI+RLR   QPIT FGE    R  RLK      L E D  + T+G  N+F   + 
Sbjct:   126 LPDIVVIQRLRERSQPITYFGETSIDRAMRLKK-----LEENDPIEYTQGD-NEFANILK 179

Query:   161 ELRKRQKTGILSERKRKDRXXXXXXXXXXXXXXXXXXXXXXXXXVDMDKDLKRMKANFDE 220
             ++ +R+       +K +D                             +++L+R++ +  +
Sbjct:   180 QIEQRKM------KKHQDSADNEKEKEENENNDKKKQQQQQENEESEEQELERLRIDSSK 233

Query:   221 LCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKV 280
              C+E KIL F K LLN+W   L    + EK++ +GK   AT+ QC  ++ PLF   R+K 
Sbjct:   234 -CKESKILYFLKGLLNDWITNLENRSDDEKKSRQGKIAEATYYQCKSHIQPLFTSLREKT 292

Query:   281 LPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNS 340
             L  DI + +  +V  C  R+Y+ A D Y+++AIGNAPWP+GVTMVGIHERS+REKI++N 
Sbjct:   293 LSIDILEHINEIVEFCKSREYVRANDEYLQMAIGNAPWPMGVTMVGIHERSSREKIFSNQ 352

Query:   341 VAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAV 376
             VAH++NDE  RKY+Q+VKRLMTFCQ +YPT PS+++
Sbjct:   353 VAHVLNDEMQRKYIQAVKRLMTFCQTQYPTAPSRSI 388

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=ISS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISS

UNIPROTKB|E2RGL1 PRPF18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 442 (160.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 84/163 (51%), Positives = 116/163 (71%)

Query:   219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
             D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK
Sbjct:   181 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 240

Query:   279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
             + LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct:   241 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 300

Query:   339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
               VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:   301 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 343

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GMH0	PRP18_DANRE	No assigned EC number	0.3385	0.8149	0.9912	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023725001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (398 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020268001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (552 aa)				•			•		0.595

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
pfam02840	144	pfam02840, Prp18, Prp18 domain	1e-80
smart00500	44	smart00500, SFM, Splicing Factor Motif, present in	7e-10
pfam08799	30	pfam08799, PRP4, pre-mRNA processing factor 4 (PRP	4e-09

>gnl|CDD|217249 pfam02840, Prp18, Prp18 domain

 Score =  244 bits (625), Expect = 1e-80
 Identities = 86/143 (60%), Positives = 107/143 (74%)

Query: 228 LVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQ 287
           L + K LL EW +EL   P  EK++A+GK   ATF Q  +YL PL +  RK  LPDDI +
Sbjct: 1   LSYLKMLLREWEEELEARPNEEKKSAQGKQAYATFVQTKKYLKPLLRKLRKNKLPDDILE 60

Query: 288 ALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMND 347
           +L  +V    +R+Y+ A D Y++LAIGNA WPIGVTMVGIHERSAREKI+ ++VAHI+ND
Sbjct: 61  SLAEIVYHLQQREYVKANDAYLKLAIGNAAWPIGVTMVGIHERSAREKIFASNVAHILND 120

Query: 348 ETTRKYLQSVKRLMTFCQRRYPT 370
           ETTRKY+QS+KRLMTF QRRYP 
Sbjct: 121 ETTRKYIQSIKRLMTFAQRRYPN 143

The splicing factor Prp18 is required for the second step of pre-mRNA splicing. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles. Length = 144

>gnl|CDD|128776 smart00500, SFM, Splicing Factor Motif, present in Prp18 and Pr04

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 102 LPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSD 146
           LP  EVIRRLR L +PITLFGEDD  R +RL+ +L     E+D  
Sbjct: 1   LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIVQ-DELDKG 44

Length = 44

>gnl|CDD|204069 pfam08799, PRP4, pre-mRNA processing factor 4 (PRP4) like

 Score = 51.2 bits (124), Expect = 4e-09
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query: 107 VIRRLRLLKQPITLFGEDDDARLERLKYVL 136
           VIRRLR L +PITLFGE D  R ERL+ +L
Sbjct: 1   VIRRLRELGEPITLFGETDADRRERLRKLL 30

This small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
KOG2808	341	consensus U5 snRNP-associated RNA splicing factor	100.0
PF02840	144	Prp18: Prp18 domain; InterPro: IPR004098 The splic	100.0
smart00500	44	SFM Splicing Factor Motif, present in Prp18 and Pr	99.39
PF08799	30	PRP4: pre-mRNA processing factor 4 (PRP4) like; In	99.3
PF07304	157	SRA1: Steroid receptor RNA activator (SRA1); Inter	97.76
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.52
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	95.58

>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.6e-104  Score=776.84  Aligned_cols=333  Identities=47%  Similarity=0.767  Sum_probs=276.5

Q ss_pred             ChhhHHHHHHHHhhhhhc---cCCcceeehhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCCCcccccCCCc
Q 014920            1 MDLLKQELLRKRQGLAEE---TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNSTASSANSNSVSSARTTTA   77 (416)
Q Consensus         1 MD~LKaEI~rKRK~le~~---~~~KKyfkRgdLe~ke~E~~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (416)
                      ||+||+||+||||++++.   .++|||||||||+++++|+|.++++.    ..+  .....+            +  +.+
T Consensus         1 MD~Lk~Ei~rKRk~~e~~~~~~~~kK~fkr~d~e~k~~e~y~q~~~k----~~q--~~~~~~------------~--~~t   60 (341)
T KOG2808|consen    1 MDFLKAEIARKRKLLEGRTSELENKKYFKRGDLEKKREEEYLQKQGK----DEQ--EELEKQ------------K--LET   60 (341)
T ss_pred             CchHHHHHHHHHHHhhcchhhhhHHHHHhhhHHHHHHHHHHHHHhcc----ccc--hhhhhc------------c--ccc
Confidence            999999999999999984   68999999999999999999877542    111  111000            0  000


Q ss_pred             ccccccccccccccccccccCCCCCCHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHccccccC-cccccCccchHH
Q 014920           78 TTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVD-SDMTEGQTNDFL  156 (416)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~~~~~~~Lp~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~~~~~e~~-~e~~~G~~Ndf~  156 (416)
                      +..+    ..+....      ...||+.|||+|||++|+||+||||++.+++.||+++      ++. |++++|++|||+
T Consensus        61 ~~~~----~~~~~~~------~~~l~~sev~~rLre~~~Pi~lfGEtd~~~k~rl~~~------e~~~Pe~~eg~~nd~~  124 (341)
T KOG2808|consen   61 SRLP----YEEKSLA------IEKLPRSEVIRRLRERGEPIILFGETDKSAKDRLRQK------EILQPEMNEGFRNDFQ  124 (341)
T ss_pred             ccCc----cchHHHH------HhhcchHHHHHHHHHcCCCccccCCCCHHHHHHHHHh------ccCCcccccccchhHH
Confidence            0000    0111111      2348999999999999999999999999999999996      445 999999999999


Q ss_pred             HHHHHHHHHHhh-hhhhhhhhcccccCCCCCCCCCCCCccccccCCCCCCCchhHHHHhh---hhhhhhhchhHHHHHHH
Q 014920          157 RDIVELRKRQKT-GILSERKRKDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMK---ANFDELCEEDKILVFFK  232 (416)
Q Consensus       157 ~a~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~k---~~~~~l~d~d~I~~~~k  232 (416)
                      .+|+++++++.. ++.+.......++.    +       +....   ...+.+++++.+.   ..+.++||+|+|..|++
T Consensus       125 ~~i~e~~k~~~~~~~~~~~~s~~q~d~----~-------d~~~~---~E~~~~e~ie~~~~~~a~~~d~kd~diI~tf~k  190 (341)
T KOG2808|consen  125 AAIKEIDKQELQEEMMGDRESTTQDDD----S-------DLKSG---EENDRWEDIETLIAQLATFDDLKDSDIILTFLK  190 (341)
T ss_pred             HHHHHHHHHHHHHHhhcCCcccccchh----h-------hhhhh---hhccChhHHHHHHHhhcccCccchHHHHHHHHH
Confidence            999999999987 44332221111110    0       11100   0113455666665   46778999999999999


Q ss_pred             HHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q 014920          233 RLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLA  312 (416)
Q Consensus       233 ~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~La  312 (416)
                      +||.+|...|++++..+++|++|++..++|+||++||+|||.+|+++.||+||+.||+.||+|||+|+|+.|||+||+||
T Consensus       191 ~LL~~W~~~l~~~~~~~kkss~~k~~~a~fkQtk~yL~pLf~~lr~~~Lp~DI~~sLa~Ic~~~~~reyl~AndaYlklA  270 (341)
T KOG2808|consen  191 FLLSEWANELNARELTEKKSSQGKMMLATFKQTKRYLKPLFRLLRRKNLPADIRQSLADICYLCQKREYLKANDAYLKLA  270 (341)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCccceeeeeeechhhhhhhcccCccccccchHHHHHHHHhHHHHHHHHhhCCCCCCcceeeccCCC
Q 014920          313 IGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLAN  383 (416)
Q Consensus       313 IGNa~WPIGVTmVGIHeRs~reKI~~~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~ptdPSk~Ve~~~~~~  383 (416)
                      ||||||||||||||||+|+||+||++++|||||||||||||||+|||||||||++|||||||||||++++|
T Consensus       271 IGNAPWPIGVTmVGIH~Rs~reKi~~~~vahvLndEtqRKyiQ~lKRlmT~cq~~~pt~Psk~vEy~~~~~  341 (341)
T KOG2808|consen  271 IGNAPWPIGVTMVGIHERSGREKIFSNNVAHVLNDETQRKYIQALKRLMTFCQRYFPTDPSKSVEYNSLAN  341 (341)
T ss_pred             ccCCCCccceeeeeehhhhhHHHHhcccHHHHhccHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing

Probab=100.00  E-value=2.7e-69  Score=482.66  Aligned_cols=144  Identities=62%  Similarity=1.015  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHH
Q 014920          227 ILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMD  306 (416)
Q Consensus       227 I~~~~k~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And  306 (416)
                      |+.||+++|++|+.+|+++|+++|+|++|+.+.++|.||++||+|||++|++++||+||+.+|++||+|||+|+|++|||
T Consensus         1 i~~~~k~lL~eW~~~l~~r~~~~k~s~~gk~~~~~~~qtk~~l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And   80 (144)
T PF02840_consen    1 IRSYIKFLLKEWEEELNSRPEEEKRSAQGKQASATYKQTKRYLKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKAND   80 (144)
T ss_dssp             -HHHHHHHHHHHHHCCCCS-CC------------CHHHHHHHHHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCChhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCccceeeeeeechhhhhhhcccCccccccchHHHHHHHHhHHHHHHHHhhCCC
Q 014920          307 HYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPT  370 (416)
Q Consensus       307 ~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~pt  370 (416)
                      +||+||||||||||||||||||+|+|||||++++||||||||+||||||+|||||||||++|||
T Consensus        81 ~Yl~LsIGna~WPIGVt~vGIHeRsareki~~~~vAhimnDE~tRk~iq~iKRLitf~q~~~p~  144 (144)
T PF02840_consen   81 AYLKLSIGNAAWPIGVTMVGIHERSAREKIFSSNVAHIMNDETTRKYIQSIKRLITFAQRKYPT  144 (144)
T ss_dssp             HHHHHHTTB----SS---------------------B----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCcceeeeechhhhhHHHHHhccchhHHhccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999997

PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.

>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04

Probab=99.39  E-value=3.2e-13  Score=99.80  Aligned_cols=36  Identities=64%  Similarity=0.984  Sum_probs=33.8

Q ss_pred             CCHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHH
Q 014920          102 LPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLK  137 (416)
Q Consensus       102 Lp~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~  137 (416)
                      +|+.+|+++||++|||||||||++.+|++||++|+.
T Consensus         1 ~~d~eV~~~LR~lgePi~lFGE~~~~Rr~RL~~ll~   36 (44)
T smart00500        1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLI   36 (44)
T ss_pred             CCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHH
Confidence            478899999999999999999999999999999864

>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins

Probab=99.30  E-value=1.9e-12  Score=88.59  Aligned_cols=30  Identities=63%  Similarity=0.908  Sum_probs=24.5

Q ss_pred             HHHHHHhcCCCccccCCCHHHHHHHHHHHH
Q 014920          107 VIRRLRLLKQPITLFGEDDDARLERLKYVL  136 (416)
Q Consensus       107 vi~rLR~lgePi~LFGE~~~~R~~RLr~l~  136 (416)
                      |+++||++|||||||||++.+|+.||++|+
T Consensus         1 V~~~LR~lgePi~lFGE~~~~R~~RLr~l~   30 (30)
T PF08799_consen    1 VRRRLRELGEPITLFGETDADRRERLRRLL   30 (30)
T ss_dssp             HHHHHHHCT--SCETT--HHHHHHHHHHHH
T ss_pred             ChHHHHhcCCChhhhCCChHHHHHHHHHhC
Confidence            789999999999999999999999999873

PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.

>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins

Probab=97.76  E-value=0.00012  Score=67.00  Aligned_cols=75  Identities=23%  Similarity=0.351  Sum_probs=62.6

Q ss_pred             HHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcccCc
Q 014920          262 FKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSV  341 (416)
Q Consensus       262 ~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~~v  341 (416)
                      ...+.+-|.-||.+|+++.|+..+...|..|+..|+.|+|..|++..+.|..-                           
T Consensus        67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~---------------------------  119 (157)
T PF07304_consen   67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD---------------------------  119 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS---------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------------
Confidence            46788899999999999999999999999999999999999999999988642                           


Q ss_pred             cccccchHHHHHHHHhHHHHHHHHhh
Q 014920          342 AHIMNDETTRKYLQSVKRLMTFCQRR  367 (416)
Q Consensus       342 AHVmnDE~tRkyiqsiKRLmTf~Q~~  367 (416)
                       |+   +....|+.+|||||+.+...
T Consensus       120 -h~---~E~~~WmvGVKRLI~~~r~~  141 (157)
T PF07304_consen  120 -HV---DECGNWMVGVKRLIAMARNL  141 (157)
T ss_dssp             -SH---HHHTTTHHHHHHHHHHHHHH
T ss_pred             -cH---HHhhhHHHHHHHHHHHHHhc
Confidence             22   23678999999999998754

The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.52  E-value=8.1e-05  Score=77.43  Aligned_cols=34  Identities=56%  Similarity=0.760  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHH
Q 014920          104 KQEVIRRLRLLKQPITLFGEDDDARLERLKYVLK  137 (416)
Q Consensus       104 ~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~  137 (416)
                      +.||+..||.+|+||++|||+..+|++||++||.
T Consensus        50 D~evr~~Lr~l~ePi~~fgE~~~~RR~RL~~lL~   83 (459)
T KOG0272|consen   50 DSEVRSPLRALKEPITLFGEDALARRQRLRELLS   83 (459)
T ss_pred             HHHHHHHHHHhCCCCcccCCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=0.099  Score=60.17  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=61.0

Q ss_pred             HHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhccc
Q 014920          260 ATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN  339 (416)
Q Consensus       260 ~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~  339 (416)
                      ..++.+.+.|.=||.+|++++|.+.+.+.|..|++++..|+|..|...--.|+ ++                        
T Consensus       972 rkl~d~~kRL~~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia-tt------------------------ 1026 (1049)
T KOG0307|consen  972 RKLKDVTKRLEILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA-TT------------------------ 1026 (1049)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh-hc------------------------
Confidence            34667788899999999999999999999999999999999999987655554 11                        


Q ss_pred             CccccccchHHHHHHHHhHHHHHHHH
Q 014920          340 SVAHIMNDETTRKYLQSVKRLMTFCQ  365 (416)
Q Consensus       340 ~vAHVmnDE~tRkyiqsiKRLmTf~Q  365 (416)
                      +     -|| .+-|+.+|||||+.+-
T Consensus      1027 ~-----~~E-~s~wmp~lK~ll~~a~ 1046 (1049)
T KOG0307|consen 1027 E-----FDE-CSSWMPGLKRLLQIAS 1046 (1049)
T ss_pred             c-----hhh-hhhHHHHHHHHHHHHh
Confidence            1     122 3449999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
1dvk_A	173	Crystal Structure Of The Functional Domain Of The S		9e-13

>pdb|1DVK|A Chain A, Crystal Structure Of The Functional Domain Of The Splicing Factor Prp18 Length = 173

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 304 AMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN-SVAHIMNDETTRKYLQSVKRLMT 362
           A+  Y++L+IGN  WPIGVT VGIH RSA  KI    + A+IM DE TR ++ S+KRL+T
Sbjct: 101 AVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLIT 160
Query: 363 F 363
           F
Sbjct: 161 F 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
1dvk_A	173	PRP18; PRE-mRNA splicing factor, X-RAY crystallogr	4e-61
2dk4_A	76	PRE-mRNA-splicing factor 18; SFM domain, HPRP18, s	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1mzw_B	31	U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-p	2e-05

>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1 Length = 173

 Score =  194 bits (495), Expect = 4e-61
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 205 VDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQ 264
           + +  D  ++ +   +     K  ++   +L+ W   L                   F  
Sbjct: 13  ISVIIDPSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPE------------LFLD 60

Query: 265 CARYLNPLFKFCRKKVLPDDIRQALMLMV-NCCMKRDYLAAMDHYIRLAIGNAPWPIGVT 323
             + L PL    R+  L  D+  +L  ++ +    ++   A+  Y++L+IGN  WPIGVT
Sbjct: 61  TKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVT 120

Query: 324 MVGIHERSAREKIYT-NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKA 375
            VGIH RSA  KI    + A+IM DE TR ++ S+KRL+TF +       S A
Sbjct: 121 SVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITFEEWYTSNHDSLA 173

>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1 Length = 76

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 77  ATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLK 133
           ++ +SG S+     L   +    + L +QEVIRRLR   +PI LFGE D    +RL+
Sbjct: 2   SSGSSGTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLR 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 54/411 (13%), Positives = 108/411 (26%), Gaps = 124/411 (30%)

Query: 22  RRVFKRSEIEQKQIQKLREQ----------EKREQEAK-----LLRQNNSHNSTASSANS 66
           + +  + EI+   + K               K+E+  +     +LR N     +      
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 67  NSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLR--LLK-QP---ITL 120
              S                  +   + Q     N+ + +   +LR  LL+ +P   + +
Sbjct: 103 RQPSMMTRMYIEQRD-------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 121 -----FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDI--VELRKRQKTGILSE 173
                 G          K  +     +V          DF   I  + L+       + E
Sbjct: 156 DGVLGSG----------KTWVAL---DVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLE 200

Query: 174 RKRKDREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKR 233
                               ++L      +          +K     +  E + L+  K 
Sbjct: 201 ML------------------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 234 ----LL---NEWNQELNEMPEAEKRTAKG-----KSMVAT-FKQCARYLNPLFKFCRKKV 280
               LL   N  N           +         K ++ T FKQ   +L+         +
Sbjct: 243 YENCLLVLLNVQN----------AKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHI 289

Query: 281 LPDDIR------QALMLMVNCC-MKRDYLAAMDHYIRLAIGNAPWPIGVTMVG--IHERS 331
             D         +   L++     +   L       R  +   P  +   ++   I +  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPRRLS--IIAESIRDGL 341

Query: 332 AREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLA 382
           A    +     H+  D+ T     S+  L     R+          F+ L+
Sbjct: 342 ATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKM---------FDRLS 379

>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} Length = 31

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 106 EVIRRLRLLKQPITLFGEDDDARLERLKYVL 136
           EV   LR L +PITLFGE    R ERL+ +L
Sbjct: 1   EVKASLRALGEPITLFGEGPAERRERLRNIL 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
1dvk_A	173	PRP18; PRE-mRNA splicing factor, X-RAY crystallogr	100.0
2dk4_A	76	PRE-mRNA-splicing factor 18; SFM domain, HPRP18, s	99.45
1mzw_B	31	U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-p	99.32
2yru_A	118	Steroid receptor RNA activator 1; SRAP, structural	98.09

>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1

Probab=100.00  E-value=1.2e-67  Score=481.72  Aligned_cols=140  Identities=34%  Similarity=0.519  Sum_probs=113.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh-chH
Q 014920          223 EEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK-RDY  301 (416)
Q Consensus       223 d~d~I~~~~k~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~-rey  301 (416)
                      +..+|..||+++|++|+.+|++++            .++|.||++||+|||++|++++||+||+.+|++||+|||+ |+|
T Consensus        31 l~~~~~~y~~~lL~eWe~~L~~~~------------~~~~~Qtk~~l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y   98 (173)
T 1dvk_A           31 LSMKCNLYIHEILSRWKASLEAYH------------PELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEI   98 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGSC------------HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhH
Confidence            456789999999999999999875            3579999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcc-cCccccccchHHHHHHHHhHHHHHHHHhhCCCCCCc
Q 014920          302 LAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT-NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSK  374 (416)
Q Consensus       302 ~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~-~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~ptdPSk  374 (416)
                      ++|||+||+||||||||||||||||||+|||||||++ ++||||||||+||||||||||||||||++||++||+
T Consensus        99 ~~And~Yl~LaIGNA~WPIGVTmVGIHeRsareKI~~~~~vAHImnDE~tRKyiqsiKRLmTf~Q~~~p~~~s~  172 (173)
T 1dvk_A           99 NLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITFEEWYTSNHDSL  172 (173)
T ss_dssp             HHHHHHHHHHHHTBCCCCSCC--------------------CBCCCCHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHhhcCCCCCceeeeeeeehhhHHHHHhccchhhHHhccHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            9999999999999999999999999999999999996 699999999999999999999999999999999986

>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1

Probab=99.45  E-value=8.3e-14  Score=112.32  Aligned_cols=49  Identities=39%  Similarity=0.651  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHccccccCcccccCcc
Q 014920           99 NLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQT  152 (416)
Q Consensus        99 ~~~Lp~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~~~~~e~~~e~~~G~~  152 (416)
                      ..++|+.||+++||++|||||||||++++|+.|||+|+.     ..+++++|+.
T Consensus        24 ~v~~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RLr~l~~-----~~~~~~~g~~   72 (76)
T 2dk4_A           24 PMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEI-----LTPEVNKGSG   72 (76)
T ss_dssp             SCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHH-----HCSSSCCCCC
T ss_pred             CCCCCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHh-----cCcccccCCC
Confidence            467999999999999999999999999999999999853     2366776663

>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}

Probab=99.32  E-value=4.9e-13  Score=91.15  Aligned_cols=30  Identities=53%  Similarity=0.775  Sum_probs=28.9

Q ss_pred             HHHHHHHhcCCCccccCCCHHHHHHHHHHH
Q 014920          106 EVIRRLRLLKQPITLFGEDDDARLERLKYV  135 (416)
Q Consensus       106 Evi~rLR~lgePi~LFGE~~~~R~~RLr~l  135 (416)
                      ||+++||++|||||||||++.+|+.||+++
T Consensus         1 eV~~~LR~lgePi~lFGE~~~~Rr~RLr~l   30 (31)
T 1mzw_B            1 EVKASLRALGEPITLFGEGPAERRERLRNI   30 (31)
T ss_dssp             CHHHHHHHTTCCSEETTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCeeecCCChHHHHHHHHHh
Confidence            599999999999999999999999999986

>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.09  E-value=8.7e-06  Score=70.39  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             HHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcccCc
Q 014920          262 FKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSV  341 (416)
Q Consensus       262 ~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~~v  341 (416)
                      ...+.+-|.-||.+|++++|++.+...|..|+.+++.++|..|+..++.|+-.                           
T Consensus        38 ~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~---------------------------   90 (118)
T 2yru_A           38 CDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD---------------------------   90 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS---------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------
Confidence            45677789999999999999999999999999999999999999999988641                           


Q ss_pred             cccccchHHHHHHHHhHHHHHHHHhhCCCCCC
Q 014920          342 AHIMNDETTRKYLQSVKRLMTFCQRRYPTMPS  373 (416)
Q Consensus       342 AHVmnDE~tRkyiqsiKRLmTf~Q~~~ptdPS  373 (416)
                       |  -+| ...|+.+|||||+.++. .|..||
T Consensus        91 -~--~~E-~~~Wm~GlKrLI~~a~~-~~~~~~  117 (118)
T 2yru_A           91 -H--VTE-VSQWMVGVKRLIAEKKS-LSGPSS  117 (118)
T ss_dssp             -T--HHH-HTTTHHHHHHHHHHHHH-HHSCCC
T ss_pred             -c--HHH-HHhHHHHHHHHHHHHHH-cCCCCC
Confidence             2  234 35899999999999875 444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	416
d1dvka_	169	a.72.1.1 (A:) Functional domain of the splicing fa	2e-58
d2dk4a1	63	a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Hu	4e-09

>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: All alpha proteins
fold: Functional domain of the splicing factor Prp18
superfamily: Functional domain of the splicing factor Prp18
family: Functional domain of the splicing factor Prp18
domain: Functional domain of the splicing factor Prp18
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  186 bits (474), Expect = 2e-58
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
           K  ++   +L+ W   L                   F    + L PL    R+  L  D+
Sbjct: 34  KCNLYIHEILSRWKASLEAYHPE------------LFLDTKKALFPLLLQLRRNQLAPDL 81

Query: 286 RQAL-MLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN-SVAH 343
             +L  ++ +    ++   A+  Y++L+IGN  WPIGVT VGIH RSA  KI    + A+
Sbjct: 82  LISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAAN 141

Query: 344 IMNDETTRKYLQSVKRLMTFCQRRYPT 370
           IM DE TR ++ S+KRL+TF +  Y +
Sbjct: 142 IMIDERTRLWITSIKRLITFEE-WYTS 167

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 83  ASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVL 136
            S+     L   +    + L +QEVIRRLR   +PI LFGE D    +RL+ + 
Sbjct: 1   TSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIE 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1dvka_	169	Functional domain of the splicing factor Prp18 {Ba	100.0
d2dk4a1	63	Pre-mRNA-splicing factor 18 {Human (Homo sapiens)	99.52

>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Functional domain of the splicing factor Prp18
superfamily: Functional domain of the splicing factor Prp18
family: Functional domain of the splicing factor Prp18
domain: Functional domain of the splicing factor Prp18
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-62  Score=440.03  Aligned_cols=133  Identities=35%  Similarity=0.594  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh-chHHHH
Q 014920          226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK-RDYLAA  304 (416)
Q Consensus       226 ~I~~~~k~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~-rey~~A  304 (416)
                      ++..||++||++|+.+|+++++            ++|.||++||+|||++|++++||+|||.+|++||+||++ |+|++|
T Consensus        34 ql~~y~k~lL~eW~~~l~~~~~------------~~~~qtk~~l~PL~~~l~~~~l~~dil~~L~~Iv~~~~~~r~y~~A  101 (169)
T d1dvka_          34 KCNLYIHEILSRWKASLEAYHP------------ELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLA  101 (169)
T ss_dssp             HHHHHHHHHHHHHHHTGGGSCH------------HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcch------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHH
Confidence            4579999999999999999875            379999999999999999999999999999999999986 899999


Q ss_pred             HHHHHHhhhcCCCCccceeeeeeechhhhhhhcc-cCccccccchHHHHHHHHhHHHHHHHHhhCCCC
Q 014920          305 MDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT-NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTM  371 (416)
Q Consensus       305 nd~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~-~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~ptd  371 (416)
                      ||+||+||||||||||||||||||+|||||||+. ++||||||||+||||||+|||||||||+ ||+|
T Consensus       102 ~d~Yl~LaIGNA~WPIGVT~VGIHeRsareKi~~s~~vAHImnDE~tRkyiqsiKRLiTf~q~-~~t~  168 (169)
T d1dvka_         102 VQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITFEEW-YTSN  168 (169)
T ss_dssp             HHHHHHHHHTBCCCCSCC--------------------CBCCCCHHHHHHHHHHHHHHHHHHH-HHHC
T ss_pred             HHHHHHHHccCCCCccceeeeeeehhhHHHHHhhcchhhHHhccHHHHHHHHHHHHHHHHHhh-cCCC
Confidence            9999999999999999999999999999999975 5899999999999999999999999995 8876

>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: PRP4-like
family: PRP4-like
domain: Pre-mRNA-splicing factor 18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-15  Score=114.05  Aligned_cols=47  Identities=40%  Similarity=0.652  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHccccccC-cccccC
Q 014920           98 DNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVD-SDMTEG  150 (416)
Q Consensus        98 ~~~~Lp~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~~~~~e~~-~e~~~G  150 (416)
                      .+.++|+.||+++||++|||||||||++++|+.|||+|+      +. |++++|
T Consensus        16 ~~v~l~~~eV~~~LR~lgePI~lFGE~~~~rr~RLr~le------~~~pe~n~g   63 (63)
T d2dk4a1          16 LPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIE------ILTPEVNKG   63 (63)
T ss_dssp             SSCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHH------HHCSSSCCC
T ss_pred             CCCCCCHHHHHHHHHHcCCCeehhcCChHHHHHHHHHHH------hcCccccCC
Confidence            357899999999999999999999999999999999983      34 888877