Citrus Sinensis ID: 014922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
cHHHHHHcccccccccccccccEEEEEccEEEEcccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccEEEcccccccHHHHHHHHHcccEEEcEEEEEEEEcccccEEEEEEcccccEEEEccEEEEccccHHHHHccccccHHHHHHHcccccccEEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHccccHHcccccccccEEEEEcccEEcccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccEEEcHcHHHHHHHHHHHHccccEEEccEEEEEEEcccccEEEEEEcccccEEEEEcEEEEEccHHHHHHHHccccHHHHHHHHccccccEEEEEEEccHHHccccccccccccccEEEEEcccccEEEEEEEEccccccccccccEEEEEEEcccccHHHHcccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccc
MLKMVVDsglkddlvlgdpnaprfvlwngrlrpvpssptdlpifdlmSIGGKIRaglgalglrppppgheesVEEFVRRNLGDEVFERLIEpfcsgvyagdpsklsMKAAFGKVWKLeqtggsiigGTFKAIQeknkapkqprdprlpkpkgqtvgsfrkgltmlPEAISKRLGSKVKLSWklsgvkkldsgeysltyetpeglvslrsrsvvmTVPSYVAssllrplsvdaagalsqfyyppvaavsvsypkeairteclidgelkgfgqlhprsqgvetlgtiyssslfpnrapaGRVLLLNYIggatnlgilsKKESELVEAVDRDLRKMlinpnakdplvLGVRVWQQAIPQFLVGHLDLLDAAKsslrdngyqglflgGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
MLKMVVDsglkddlvlgdpNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKnkapkqprdprlpkpkgqtvgsfrkgltmlpeaiskrlgskvklswklsgvkkldsgeysltyetpeglvslrsRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAtnlgilskkeSELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVsnflsqyayk
MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIraglgalglrppppgHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
***********DDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGL*************FVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKA************************************AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS*****
MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTF***********************QTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS*****
MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQ*********************VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKN***************GQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYA**
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MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
P55826537 Protoporphyrinogen oxidas yes no 1.0 0.774 0.853 0.0
Q9AR38536 Protoporphyrinogen oxidas yes no 1.0 0.776 0.814 0.0
O24163548 Protoporphyrinogen oxidas N/A no 1.0 0.759 0.812 0.0
P56601471 Protoporphyrinogen oxidas yes no 0.887 0.783 0.324 2e-40
P32397470 Protoporphyrinogen oxidas yes no 0.925 0.819 0.290 1e-36
O24164504 Protoporphyrinogen oxidas N/A no 0.932 0.769 0.291 7e-35
Q94IG7531 Protoporphyrinogen oxidas N/A no 0.935 0.732 0.269 4e-34
P51175477 Protoporphyrinogen oxidas yes no 0.903 0.788 0.278 1e-19
P50336477 Protoporphyrinogen oxidas yes no 0.822 0.716 0.268 1e-18
Q54DT8532 Protoporphyrinogen oxidas yes no 0.925 0.723 0.211 1e-18
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1 Back     alignment and function desciption
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/416 (85%), Positives = 379/416 (91%)

Query: 1   MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
           ML MVVDSGLKDDLVLGDP APRFVLWNG+LRPVPS  TDLP FDLMSIGGKIRAG GAL
Sbjct: 122 MLTMVVDSGLKDDLVLGDPTAPRFVLWNGKLRPVPSKLTDLPFFDLMSIGGKIRAGFGAL 181

Query: 61  GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
           G+RP PPG EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ 
Sbjct: 182 GIRPSPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQN 241

Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
           GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLS
Sbjct: 242 GGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLS 301

Query: 181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
           WKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLRPLS  AA ALS+ Y
Sbjct: 302 WKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSESAANALSKLY 361

Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
           YPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIYSSSLFPNRAP GR+
Sbjct: 362 YPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIYSSSLFPNRAPPGRI 421

Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
           LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LGVRVW QAIPQFLVG
Sbjct: 422 LLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVG 481

Query: 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
           H D+LD AKSSL  +GY+GLFLGGNYVAGVALGRCVE AYE A EV+NF+S+YAYK
Sbjct: 482 HFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537
Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 4
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1 Back     alignment and function description
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1 Back     alignment and function description
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1 Back     alignment and function description
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1 Back     alignment and function description
>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1 Back     alignment and function description
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1 Back     alignment and function description
>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
225437762 549 PREDICTED: protoporphyrinogen oxidase, c 1.0 0.757 0.879 0.0
147768434 549 hypothetical protein VITISV_004031 [Viti 1.0 0.757 0.859 0.0
255548233 536 protoporphyrinogen oxidase, chloroplast 1.0 0.776 0.858 0.0
224068727 543 predicted protein [Populus trichocarpa] 1.0 0.766 0.850 0.0
15234278 537 protoporphyrinogen oxidase [Arabidopsis 1.0 0.774 0.853 0.0
356534933 543 PREDICTED: protoporphyrinogen oxidase, c 1.0 0.766 0.846 0.0
14423414 537 Unknown protein [Arabidopsis thaliana] 1.0 0.774 0.850 0.0
224128133 544 predicted protein [Populus trichocarpa] 1.0 0.764 0.843 0.0
3859604 545 Arabidopsis thaliana protoporphyrinogen 1.0 0.763 0.837 0.0
312283359 536 unnamed protein product [Thellungiella h 1.0 0.776 0.850 0.0
>gi|225437762|ref|XP_002273793.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic [Vitis vinifera] gi|297744080|emb|CBI37050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/416 (87%), Positives = 385/416 (92%)

Query: 1   MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
           ML M VDSGLKDDLVLGDPNAPRFVLWNG+LRPVPS PTDLP FDLMS  GK+RAG GAL
Sbjct: 134 MLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTDLPFFDLMSFPGKLRAGFGAL 193

Query: 61  GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
           G+RPPPP HEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ 
Sbjct: 194 GIRPPPPDHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQK 253

Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
           GGSIIGGTFKAIQEKN  PK  RDPRLPKPKGQTVGSF+KGL MLPEAISKRLG KVKLS
Sbjct: 254 GGSIIGGTFKAIQEKNNTPKPLRDPRLPKPKGQTVGSFKKGLIMLPEAISKRLGGKVKLS 313

Query: 181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
           WKLS + +LD G YSLTYETPEGLVSL+SRSVVMTVPS VASSLL PLS  AA ALS+FY
Sbjct: 314 WKLSSIIRLDDGGYSLTYETPEGLVSLQSRSVVMTVPSRVASSLLHPLSAVAADALSKFY 373

Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
           YPPVAAVS+SYPKEAIRTECLI+GELKGFGQLHPRSQGVETLGTIYSSSLFPNRAP GR+
Sbjct: 374 YPPVAAVSISYPKEAIRTECLIEGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPPGRI 433

Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
           LLLNYIGGATN GILSK ESELVEAVDRDLRKMLINPNAKDPLVLGVRVW QAIPQFL+G
Sbjct: 434 LLLNYIGGATNPGILSKTESELVEAVDRDLRKMLINPNAKDPLVLGVRVWPQAIPQFLIG 493

Query: 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
           HLDLLDAAKS+LRD G+QG+FLGGNYV+GVALGRCVE AYEVA+EV++FLSQY YK
Sbjct: 494 HLDLLDAAKSALRDGGFQGMFLGGNYVSGVALGRCVEGAYEVAAEVADFLSQYVYK 549

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147768434|emb|CAN69262.1| hypothetical protein VITISV_004031 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548233|ref|XP_002515173.1| protoporphyrinogen oxidase, chloroplast precursor, putative [Ricinus communis] gi|223545653|gb|EEF47157.1| protoporphyrinogen oxidase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068727|ref|XP_002302810.1| predicted protein [Populus trichocarpa] gi|222844536|gb|EEE82083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15234278|ref|NP_192078.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|2495184|sp|P55826.1|PPOC_ARATH RecName: Full=Protoporphyrinogen oxidase, chloroplastic; Short=PPO; Flags: Precursor gi|1877018|dbj|BAA11820.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|7268212|emb|CAB77739.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|56550711|gb|AAV97809.1| At4g01690 [Arabidopsis thaliana] gi|58331767|gb|AAW70381.1| At4g01690 [Arabidopsis thaliana] gi|332656665|gb|AEE82065.1| protoporphyrinogen oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356534933|ref|XP_003536005.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|14423414|gb|AAK62389.1|AF386944_1 Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224128133|ref|XP_002320252.1| predicted protein [Populus trichocarpa] gi|222861025|gb|EEE98567.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|3859604|gb|AAC72870.1| Arabidopsis thaliana protoporphyrinogen oxidase precursor (PPO) (SW:P55826) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312283359|dbj|BAJ34545.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2133397537 PPOX [Arabidopsis thaliana (ta 1.0 0.774 0.824 8.7e-182
TIGR_CMR|GSU_0012469 GSU_0012 "protoporphyrinogen o 0.937 0.831 0.303 4e-42
UNIPROTKB|Q94IG7531 POX2 "Protoporphyrinogen oxida 0.942 0.738 0.276 1.3e-34
TAIR|locus:2145603508 HEMG2 [Arabidopsis thaliana (t 0.937 0.767 0.272 6.7e-33
UNIPROTKB|F1S197477 PPOX "Uncharacterized protein" 0.923 0.805 0.278 2.4e-25
RGD|1310543477 Ppox "protoporphyrinogen oxida 0.925 0.807 0.291 1e-24
TIGR_CMR|CHY_0481461 CHY_0481 "protoporphyrinogen o 0.733 0.661 0.301 1e-23
MGI|MGI:104968477 Ppox "protoporphyrinogen oxida 0.923 0.805 0.273 2.5e-22
ZFIN|ZDB-GENE-051120-90477 ppox "protoporphyrinogen oxida 0.935 0.815 0.262 2.8e-20
UNIPROTKB|P50336477 PPOX "Protoporphyrinogen oxida 0.923 0.805 0.266 4.9e-20
TAIR|locus:2133397 PPOX [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1764 (626.0 bits), Expect = 8.7e-182, P = 8.7e-182
 Identities = 343/416 (82%), Positives = 366/416 (87%)

Query:     1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIXXXXXXX 60
             ML MVVDSGLKDDLVLGDP APRFVLWNG+LRPVPS  TDLP FDLMSIGGKI       
Sbjct:   122 MLTMVVDSGLKDDLVLGDPTAPRFVLWNGKLRPVPSKLTDLPFFDLMSIGGKIRAGFGAL 181

Query:    61 XXXXXXXXHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
                      EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ 
Sbjct:   182 GIRPSPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQN 241

Query:   121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
             GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLS
Sbjct:   242 GGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLS 301

Query:   181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
             WKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLRPLS  AA ALS+ Y
Sbjct:   302 WKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSESAANALSKLY 361

Query:   241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
             YPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIYSSSLFPNRAP GR+
Sbjct:   362 YPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIYSSSLFPNRAPPGRI 421

Query:   301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
             LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LGVRVW QAIPQFLVG
Sbjct:   422 LLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVG 481

Query:   361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
             H D+LD AKSSL  +GY+GLFLGGNYVAGVALGRCVE AYE A EV+NF+S+YAYK
Sbjct:   482 HFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537
GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA;IGI
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
TIGR_CMR|GSU_0012 GSU_0012 "protoporphyrinogen oxidase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q94IG7 POX2 "Protoporphyrinogen oxidase, chloroplastic/mitochondrial" [Spinacia oleracea (taxid:3562)] Back     alignment and assigned GO terms
TAIR|locus:2145603 HEMG2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1S197 PPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1310543 Ppox "protoporphyrinogen oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0481 CHY_0481 "protoporphyrinogen oxidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
MGI|MGI:104968 Ppox "protoporphyrinogen oxidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-90 ppox "protoporphyrinogen oxidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P50336 PPOX "Protoporphyrinogen oxidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P55826PPOC_ARATH1, ., 3, ., 3, ., 40.85331.00.7746yesno
Q9AR38PPOC_ORYSJ1, ., 3, ., 3, ., 40.81491.00.7761yesno
O24163PPOC_TOBAC1, ., 3, ., 3, ., 40.81251.00.7591N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3.40.991
3rd Layer1.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028229001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (549 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032163001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (422 aa)
• •  •• 0.976
GSVIVG00002992001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)
   • •• 0.975
GSVIVG00037523001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)
•  • •• 0.974
GSVIVG00019218001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (475 aa)
• •• •• 0.973
GSVIVG00022232001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa)
   • •• 0.971
CHLH
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)
   • •• 0.964
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
     •• 0.962
GSVIVG00027816001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)
• ••  • 0.875
GSVIVG00029410001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)
• ••  • 0.853
GSVIVG00020543001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (504 aa)
  •  •••0.503

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
PLN02576496 PLN02576, PLN02576, protoporphyrinogen oxidase 0.0
TIGR00562462 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase 1e-169
PRK11883451 PRK11883, PRK11883, protoporphyrinogen oxidase; Re 1e-58
COG1232444 COG1232, HemY, Protoporphyrinogen oxidase [Coenzym 3e-57
pfam01593444 pfam01593, Amino_oxidase, Flavin containing amine 7e-46
PRK12416463 PRK12416, PRK12416, protoporphyrinogen oxidase; Pr 6e-11
PRK07233434 PRK07233, PRK07233, hypothetical protein; Provisio 2e-05
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase Back     alignment and domain information 
 Score =  709 bits (1831), Expect = 0.0
 Identities = 290/419 (69%), Positives = 335/419 (79%), Gaps = 3/419 (0%)

Query: 1   MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
            L   VDSGL+DDLV  DP APR+V+WNG+LRP+PS+P DLP FDL+S  GKIRAGLGA 
Sbjct: 75  ELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAF 134

Query: 61  GL-RPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ 119
           G  RPPPPG EESV EFVRR+LGDEVFERLI+PF SGVYAGDPS LSMKAAF K+W LE+
Sbjct: 135 GWKRPPPPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEK 194

Query: 120 TGGSIIGGTFKAIQEKNKAPKQ-PRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKV 177
            GGSIIGG  KAIQE  K PK  PRDPRLPKPKGQTVGSFR GL  LP+A++KRLG  KV
Sbjct: 195 RGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKV 254

Query: 178 KLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALS 237
           KL+WK+  + K D G YSLTY+TPEG V++ +++VVMT P YV S +LRP S  AA AL 
Sbjct: 255 KLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSPAAADALP 314

Query: 238 QFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPA 297
           +FYYPPVAAV+ SYPKEA++ E LIDG L+GFGQLHPR QGV+TLGTIYSSSLFP+RAP 
Sbjct: 315 EFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPE 374

Query: 298 GRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQF 357
           GRVLLLNYIGG+ N GI S  E ELVEAVDRDLRK+L+ P A  P V+GVRVW +AIPQ+
Sbjct: 375 GRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQY 434

Query: 358 LVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
           L+GHLD+L+AA+   +D G  GLFLGGNY  GVALG+CVES YE A  V ++L   AYK
Sbjct: 435 LLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLESSAYK 493

Length = 496
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase Back     alignment and domain information
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase Back     alignment and domain information
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 100.0
PLN02576496 protoporphyrinogen oxidase 100.0
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 100.0
PRK12416463 protoporphyrinogen oxidase; Provisional 100.0
PRK11883451 protoporphyrinogen oxidase; Reviewed 100.0
PRK07233434 hypothetical protein; Provisional 100.0
PRK07208479 hypothetical protein; Provisional 100.0
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 100.0
PLN02487569 zeta-carotene desaturase 99.97
PLN02612567 phytoene desaturase 99.97
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 99.97
PLN02268435 probable polyamine oxidase 99.97
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 99.96
PLN03000 881 amine oxidase 99.96
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.96
PLN02568539 polyamine oxidase 99.96
PLN02529 738 lysine-specific histone demethylase 1 99.95
PLN02976 1713 amine oxidase 99.94
PLN02676487 polyamine oxidase 99.94
COG1231450 Monoamine oxidase [Amino acid transport and metabo 99.94
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 99.92
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 99.82
KOG0685498 consensus Flavin-containing amine oxidase [Coenzym 99.82
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 99.81
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.79
KOG0029501 consensus Amine oxidase [Secondary metabolites bio 99.75
COG2907447 Predicted NAD/FAD-binding protein [General functio 99.74
TIGR02730493 carot_isom carotene isomerase. Members of this fam 99.74
COG1233487 Phytoene dehydrogenase and related proteins [Secon 99.41
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 99.32
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 99.32
TIGR00031377 UDP-GALP_mutase UDP-galactopyranose mutase. The ge 99.31
COG3349485 Uncharacterized conserved protein [Function unknow 99.02
PF07156368 Prenylcys_lyase: Prenylcysteine lyase; InterPro: I 98.88
PF00996438 GDI: GDP dissociation inhibitor; InterPro: IPR0182 98.33
KOG1439440 consensus RAB proteins geranylgeranyltransferase c 98.02
PRK13977576 myosin-cross-reactive antigen; Provisional 97.82
COG0562374 Glf UDP-galactopyranose mutase [Cell envelope biog 97.13
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 97.05
COG5044434 MRS6 RAB proteins geranylgeranyltransferase compon 97.05
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 96.69
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 96.53
COG2081408 Predicted flavoproteins [General function predicti 96.25
PRK08132 547 FAD-dependent oxidoreductase; Provisional 96.05
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 96.03
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 95.96
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 95.84
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 95.83
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 95.72
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 95.63
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 95.46
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 95.41
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 95.37
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 95.2
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 95.08
PRK09126392 hypothetical protein; Provisional 95.08
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 94.85
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 94.85
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 94.77
COG0579429 Predicted dehydrogenase [General function predicti 94.59
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 94.27
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 94.15
PRK06185407 hypothetical protein; Provisional 94.12
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 94.11
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 93.91
PRK10015429 oxidoreductase; Provisional 93.74
PF06100500 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross 92.45
COG0665387 DadA Glycine/D-amino acid oxidases (deaminating) [ 92.44
PF06039488 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro 92.33
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 92.1
PRK11728393 hydroxyglutarate oxidase; Provisional 91.66
KOG4405547 consensus GDP dissociation inhibitor [Signal trans 91.56
PRK05329422 anaerobic glycerol-3-phosphate dehydrogenase subun 91.49
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 91.37
PTZ00383497 malate:quinone oxidoreductase; Provisional 91.0
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 90.5
PLN02172461 flavin-containing monooxygenase FMO GS-OX 90.47
COG2509486 Uncharacterized FAD-dependent dehydrogenases [Gene 90.43
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 90.08
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 90.07
PF00743 531 FMO-like: Flavin-binding monooxygenase-like; Inter 89.87
TIGR02485432 CobZ_N-term precorrin 3B synthase CobZ. CobZ is es 89.67
PRK05257494 malate:quinone oxidoreductase; Validated 89.59
PRK08244 493 hypothetical protein; Provisional 89.45
PRK13339497 malate:quinone oxidoreductase; Reviewed 89.41
TIGR03378419 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase 88.78
PRK12845564 3-ketosteroid-delta-1-dehydrogenase; Reviewed 88.62
PRK06134 581 putative FAD-binding dehydrogenase; Reviewed 88.61
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 88.52
PRK08274466 tricarballylate dehydrogenase; Validated 88.42
PF00890417 FAD_binding_2: FAD binding domain of the Pfam fami 88.41
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 88.35
PRK07236386 hypothetical protein; Provisional 88.28
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 88.12
TIGR00275400 flavoprotein, HI0933 family. The model when search 88.01
PRK11259376 solA N-methyltryptophan oxidase; Provisional 87.85
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 87.77
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 86.87
PRK06184 502 hypothetical protein; Provisional 86.74
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 86.56
PRK06175433 L-aspartate oxidase; Provisional 86.31
PRK06475400 salicylate hydroxylase; Provisional 86.15
PRK09897 534 hypothetical protein; Provisional 85.73
PRK07588391 hypothetical protein; Provisional 85.58
PRK06847375 hypothetical protein; Provisional 85.2
PRK06996398 hypothetical protein; Provisional 84.6
PRK07121492 hypothetical protein; Validated 84.18
PRK06753373 hypothetical protein; Provisional 84.15
PF13434341 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi 84.06
PRK06370463 mercuric reductase; Validated 83.68
PRK06416462 dihydrolipoamide dehydrogenase; Reviewed 83.52
PRK07045388 putative monooxygenase; Reviewed 83.28
TIGR02053463 MerA mercuric reductase. This model represents the 83.09
PRK12842 574 putative succinate dehydrogenase; Reviewed 82.94
PRK05868372 hypothetical protein; Validated 82.8
PRK06834 488 hypothetical protein; Provisional 82.51
PRK07190 487 hypothetical protein; Provisional 82.24
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 81.73
PRK06481506 fumarate reductase flavoprotein subunit; Validated 81.48
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 81.33
TIGR03364365 HpnW_proposed FAD dependent oxidoreductase TIGR033 80.9
PRK12835 584 3-ketosteroid-delta-1-dehydrogenase; Reviewed 80.58
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 80.44
TIGR03377 516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 80.28
KOG2404477 consensus Fumarate reductase, flavoprotein subunit 80.22
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-52  Score=374.52  Aligned_cols=397  Identities=42%  Similarity=0.633  Sum_probs=334.3

Q ss_pred             ChhHHHhcCCCCceeeCCCCC----CceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCCCC--CCCCCCCcHH
Q 014922            1 MLKMVVDSGLKDDLVLGDPNA----PRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRP--PPPGHEESVE   74 (416)
Q Consensus         1 ~~~l~~elGl~~~l~~~~~~~----~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~~--~~~~~~~s~~   74 (416)
                      +++|+.||||+++++..+.+.    ++++|+.|++..+|+++.+.+++.+.++...+...+..-.|++  ..+..|+||+
T Consensus        80 ~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~  159 (491)
T KOG1276|consen   80 TLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVE  159 (491)
T ss_pred             HHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHH
Confidence            478999999999999877653    4899999999999998876555555555544544332222554  3457899999


Q ss_pred             HHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCC-CCCCC
Q 014922           75 EFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP-KPKGQ  153 (416)
Q Consensus        75 ~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  153 (416)
                      +|++||||+++++++++|+++|+|++|++++|+..+|+.+++.|++|||++.|++..++.+++.++.+.+...+ ..++.
T Consensus       160 sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~  239 (491)
T KOG1276|consen  160 SFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKW  239 (491)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999888888777665554332 34456


Q ss_pred             ceeehhhhHhHHHHHHHHHhcc---ceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCH
Q 014922          154 TVGSFRKGLTMLPEAISKRLGS---KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSV  230 (416)
Q Consensus       154 ~~~~~~gG~~~l~~~L~~~lg~---~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~  230 (416)
                      .++.++||++.++++|.+.|+.   .|.++-++..+.....+.|.+++.+.++++.+..++++.|+|+..+++++++..+
T Consensus       240 ~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~  319 (491)
T KOG1276|consen  240 TMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQN  319 (491)
T ss_pred             chhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccch
Confidence            7899999999999999999974   5799999999988765559999988888767778888889999999999999888


Q ss_pred             HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEec--CCCCCceEEEEccCCCCCCCCCCCcEEEEEEecC
Q 014922          231 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHP--RSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGG  308 (416)
Q Consensus       231 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~  308 (416)
                      .+..++.++.|.++.+|++.|..+...      .++.|||+++|  ..++...+|++|+|..||.+.|.+  .+++++++
T Consensus       320 sls~~L~ei~y~~V~vVn~~yp~~~~~------~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg  391 (491)
T KOG1276|consen  320 SLSNALSEIPYVPVAVVNTYYPKEKID------LPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGG  391 (491)
T ss_pred             hhhhhhhcCCCCceEEEEEeccCcccc------cccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEEEEecc
Confidence            888999999999999999999886422      16799999999  778899999999999999887755  55666655


Q ss_pred             CCC--CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeecc
Q 014922          309 ATN--LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNY  386 (416)
Q Consensus       309 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~  386 (416)
                      .+.  ......+.+++++.+.++|++++++..  .|....++-|++++|+|++||.+.+..++..+.+.+..+|+++|+|
T Consensus       392 ~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~  469 (491)
T KOG1276|consen  392 GGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNH  469 (491)
T ss_pred             cccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccc
Confidence            443  335667899999999999999999864  6888888899999999999999999999888887444689999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHH
Q 014922          387 VAGVALGRCVESAYEVASEVS  407 (416)
Q Consensus       387 ~~g~~~~~ai~sg~~aA~~il  407 (416)
                      +.|.++++||.+|+.+|.+++
T Consensus       470 y~Gv~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  470 YGGVSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             cCCCChhHHHHhhHHHHHhhc
Confidence            999999999999999998875

>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 Back     alignment and domain information
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function Back     alignment and domain information
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13977 myosin-cross-reactive antigen; Provisional Back     alignment and domain information
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] Back     alignment and domain information
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>PLN02172 flavin-containing monooxygenase FMO GS-OX Back     alignment and domain information
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] Back     alignment and domain information
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Back     alignment and domain information
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PRK06134 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PRK08274 tricarballylate dehydrogenase; Validated Back     alignment and domain information
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK06175 L-aspartate oxidase; Provisional Back     alignment and domain information
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK09897 hypothetical protein; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK07121 hypothetical protein; Validated Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B Back     alignment and domain information
>PRK06370 mercuric reductase; Validated Back     alignment and domain information
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>TIGR02053 MerA mercuric reductase Back     alignment and domain information
>PRK12842 putative succinate dehydrogenase; Reviewed Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK06481 fumarate reductase flavoprotein subunit; Validated Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 Back     alignment and domain information
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2ivd_A478 Structure Of Protoporphyrinogen Oxidase From Myxoco 8e-38
3i6d_A470 Crystal Structure Of Ppo From Bacillus Subtilis Wit 2e-35
1sez_A504 Crystal Structure Of Protoporphyrinogen Ix Oxidase 6e-33
3nks_A477 Structure Of Human Protoporphyrinogen Ix Oxidase Le 1e-19
3lov_A475 Crystal Structure Of Putative Protoporphyrinogen Ox 2e-13
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus Xanthus With Acifluorfen Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (389), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 187/388 (48%), Gaps = 19/388 (4%)
Query: 18  DPNAPR-FVLWNGRLRPVPSSPTDLPIFDLMSIGGKIXXXXXXXXXXXXXXXHEESVEEF 76
           DP A R +V   GRLR VP+SP      D++ +G ++                +ES+  F
Sbjct: 96  DPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGV-DESLAAF 154
Query: 77  VRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKN 136
            RR+LG    + L++   +G+YAGD  +LS+ A F  + K+E+   S+I G  +A     
Sbjct: 155 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRA----Q 210
Query: 137 KAPKQPRDPRLPKPK-GQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYS 195
           KA +Q   P    PK    + +F  GL +L +A++  LG    +  ++ G+ + D G + 
Sbjct: 211 KAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGG-WR 269
Query: 196 LTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEA 255
           L  E       L    VV+  P++  + LLRPL    A  ++   Y P+A V + +    
Sbjct: 270 LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGT 329
Query: 256 IRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGIL 315
           +           GFG L P  +    LG I++S+ FP RA  GRVL    +GGA   G++
Sbjct: 330 LPAP-------DGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLV 382
Query: 316 SKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDN 375
            + E  L  A+ R+  K L    A+ P    V  W   IPQ+ +GHL+ + A  ++L+  
Sbjct: 383 EQDEDALA-ALAREELKALAGVTAR-PSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR- 439
Query: 376 GYQGLFLGGNYVAGVALGRCVESAYEVA 403
              GL L GN   GV L  C+ +A ++A
Sbjct: 440 -LPGLHLIGNAYKGVGLNDCIRNAAQLA 466
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af Length = 470 Back     alignment and structure
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504 Back     alignment and structure
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase Length = 477 Back     alignment and structure
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase (Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06 A Resolution Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 1e-104
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 9e-94
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 2e-90
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 4e-88
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 1e-82
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 2e-26
3utf_A513 UDP-galactopyranose mutase; nucleotide binding, fl 6e-23
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 3e-09
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 1e-08
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 5e-05
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 7e-05
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 8e-05
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 9e-04
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 Back     alignment and structure
 Score =  315 bits (808), Expect = e-104
 Identities = 119/415 (28%), Positives = 193/415 (46%), Gaps = 17/415 (4%)

Query: 1   MLKMVVDSGLKDDLVLGDPNAP-RFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGA 59
              +     L+  +   DP A  R+V   GRLR VP+SP      D++ +G ++R   G 
Sbjct: 79  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRV-AGE 137

Query: 60  LGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ 119
           L  R  P G +ES+  F RR+LG    + L++   +G+YAGD  +LS+ A F  + K+E+
Sbjct: 138 LFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMER 197

Query: 120 TGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKL 179
              S+I G   AI+ +    +              + +F  GL +L +A++  LG    +
Sbjct: 198 EHRSLILG---AIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHV 254

Query: 180 SWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQF 239
             ++ G+ + D G + L  E       L    VV+  P++  + LLRPL    A  ++  
Sbjct: 255 GARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGI 313

Query: 240 YYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGR 299
            Y P+A V + +    +           GFG L P  +    LG I++S+ FP RA  GR
Sbjct: 314 AYAPIAVVHLGFDAGTLP-------APDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGR 366

Query: 300 VLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLV 359
           VL    +GGA   G++ + E  L      +L+ +        P    V  W   IPQ+ +
Sbjct: 367 VLYSCMVGGARQPGLVEQDEDALAALAREELKALA--GVTARPSFTRVFRWPLGIPQYNL 424

Query: 360 GHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYA 414
           GHL+ + A  ++L+     GL L GN   GV L  C+ +A ++A  +    + +A
Sbjct: 425 GHLERVAAIDAALQR--LPGLHLIGNAYKGVGLNDCIRNAAQLADALVAGNTSHA 477
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 Back     alignment and structure
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 100.0
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 100.0
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 100.0
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 100.0
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 100.0
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 100.0
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 100.0
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 100.0
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 99.98
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.97
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.97
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 99.96
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 99.95
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.94
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 99.94
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 99.93
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.93
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 99.92
4gut_A776 Lysine-specific histone demethylase 1B; histone de 99.9
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 99.88
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 99.87
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 99.86
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 99.85
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 99.84
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 99.84
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 99.83
3ayj_A721 Pro-enzyme of L-phenylalanine oxidase; amino acid 99.83
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.81
3hdq_A397 UDP-galactopyranose mutase; substrate and inhibito 99.78
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 99.45
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 99.42
1vg0_A650 RAB proteins geranylgeranyltransferase component A 99.3
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 99.27
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 99.11
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 98.21
2e1m_A376 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 97.75
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 97.64
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 96.38
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 95.46
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 94.56
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 93.58
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 93.41
3dme_A369 Conserved exported protein; structural genomics, P 93.22
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 93.14
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 93.0
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 92.7
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 92.16
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 92.01
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 91.9
4hb9_A412 Similarities with probable monooxygenase; flavin, 91.84
4at0_A510 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore 91.75
2qa2_A 499 CABE, polyketide oxygenase CABE; FAD, angucycline, 91.65
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 91.43
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 91.24
2qa1_A 500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 91.09
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 91.01
4a9w_A357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 90.65
2ywl_A180 Thioredoxin reductase related protein; uncharacter 90.49
2gqf_A401 Hypothetical protein HI0933; structural genomics, 90.37
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 90.19
3lad_A476 Dihydrolipoamide dehydrogenase; oxidoreductase; HE 90.1
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 90.05
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 89.85
1xdi_A499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 89.47
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 89.43
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 89.38
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 88.98
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 88.97
3d1c_A369 Flavin-containing putative monooxygenase; NP_37310 88.92
3fg2_P404 Putative rubredoxin reductase; ferredoxin reductas 88.58
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 88.46
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 88.29
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 88.14
2gv8_A447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 88.08
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 87.82
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 87.81
3oc4_A452 Oxidoreductase, pyridine nucleotide-disulfide FAM; 87.25
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 87.15
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 87.14
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 87.05
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 87.0
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 86.79
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 86.6
3r9u_A315 Thioredoxin reductase; structural genomics, center 86.48
2qae_A468 Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin 86.41
1fec_A490 Trypanothione reductase; redox-active center, oxid 86.24
2yqu_A455 2-oxoglutarate dehydrogenase E3 component; lipoami 85.95
2wpf_A495 Trypanothione reductase; oxidoreductase, trypanoso 85.71
1ges_A450 Glutathione reductase; oxidoreductase(flavoenzyme) 85.1
1m6i_A493 Programmed cell death protein 8; apoptosis, AIF, o 85.05
3gwf_A 540 Cyclohexanone monooxygenase; flavoprotein biocatal 84.98
2a8x_A464 Dihydrolipoyl dehydrogenase, E3 component of alpha 84.98
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 84.86
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 84.79
3e1t_A 512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 84.66
1trb_A320 Thioredoxin reductase; oxidoreductase(flavoenzyme) 83.79
2xve_A 464 Flavin-containing monooxygenase; oxidoreductase; H 83.7
3c4n_A405 Uncharacterized protein DR_0571; alpha-beta protei 83.61
3itj_A338 Thioredoxin reductase 1; disulfide B flavoprotein, 83.42
1mo9_A523 ORF3; nucleotide binding motifs, nucleotide bindin 83.34
1zmd_A474 Dihydrolipoyl dehydrogenase; lipoamide dehydrogena 83.24
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 83.21
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 83.21
4ap3_A 549 Steroid monooxygenase; oxidoreductase, baeyer-vill 83.06
3ab1_A360 Ferredoxin--NADP reductase; oxidoreductase, electr 82.99
1q1r_A431 Putidaredoxin reductase; glutathione reductase fol 82.92
2zbw_A335 Thioredoxin reductase; redox protein, oxidoreducta 82.9
4a5l_A314 Thioredoxin reductase; oxidoreductase, redox metab 82.86
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 82.76
2eq6_A464 Pyruvate dehydrogenase complex, dihydrolipoamide d 82.48
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 82.38
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 82.34
3atr_A453 Conserved archaeal protein; saturating double bond 82.34
3lzw_A332 Ferredoxin--NADP reductase 2; ferredoxin reductase 82.26
1ebd_A455 E3BD, dihydrolipoamide dehydrogenase; redox-active 82.24
1dxl_A470 Dihydrolipoamide dehydrogenase; oxidoreductase, mu 81.99
3l8k_A466 Dihydrolipoyl dehydrogenase; redox-active center, 81.87
4dna_A463 Probable glutathione reductase; structural genomic 81.83
1onf_A500 GR, grase, glutathione reductase; oxidoreductase; 81.67
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 81.16
2hqm_A479 GR, grase, glutathione reductase; glutathione redu 80.88
2r9z_A463 Glutathione amide reductase; NAD, FAD, substrate s 80.78
2cdu_A452 NADPH oxidase; flavoenzyme, oxidoreductase; HET: F 80.74
2e4g_A 550 Tryptophan halogenase; flavin-binding, rebeccamyci 80.39
3ic9_A492 Dihydrolipoamide dehydrogenase; APC62701, colwelli 80.32
2r0c_A 549 REBC; flavin adenine dinucleotide, monooxygenase, 80.2
2qcu_A501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 80.06
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
Probab=100.00  E-value=1.2e-43  Score=352.06  Aligned_cols=401  Identities=28%  Similarity=0.475  Sum_probs=305.0

Q ss_pred             hhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCCCCC----CCCCCCcHHHHH
Q 014922            2 LKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPP----PPGHEESVEEFV   77 (416)
Q Consensus         2 ~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~~~----~~~~~~s~~~~l   77 (416)
                      ++++++||+.+++.+......++++.+|+.+++|.++..++...+++..++++.+...+.....    ...+++|+++|+
T Consensus        77 ~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  156 (504)
T 1sez_A           77 TFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFF  156 (504)
T ss_dssp             HHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHH
T ss_pred             HHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHH
Confidence            5799999998877665443346778899999998764444444567777777765443211110    124679999999


Q ss_pred             HHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCC-CCCCCcee
Q 014922           78 RRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP-KPKGQTVG  156 (416)
Q Consensus        78 ~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  156 (416)
                      +++++++.++++++|++.++|+.+++++|+.++++.++.+++.+|+++.+++.................+. ......++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (504)
T 1sez_A          157 QRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSF  236 (504)
T ss_dssp             HHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCB
T ss_pred             HHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceE
Confidence            99999999999999999999999999999999999999888888888777765332111000000000000 00122468


Q ss_pred             ehhhhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCc-----eEEEEeCCCCc--eEEecCEEEEcCChHHHHhccC--
Q 014922          157 SFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGE-----YSLTYETPEGL--VSLRSRSVVMTVPSYVASSLLR--  226 (416)
Q Consensus       157 ~~~gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~-----v~v~~~~~~g~--~~~~ad~VI~a~p~~~~~~ll~--  226 (416)
                      +++||+++|+++|++.++ ++|++|++|++|+.++++.     |.|++.+.+|.  ++++||+||+|+|+..+.+++.  
T Consensus       237 ~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~  316 (504)
T 1sez_A          237 SFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAK  316 (504)
T ss_dssp             EETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEES
T ss_pred             eeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcc
Confidence            899999999999999997 7999999999999887753     67776544552  2689999999999999999872  


Q ss_pred             ---CCCHHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCC---CCceEEEEccCCCCCCCCCCCcE
Q 014922          227 ---PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQ---GVETLGTIYSSSLFPNRAPAGRV  300 (416)
Q Consensus       227 ---~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~s~~~~~~~p~g~~  300 (416)
                         +..+   ..+.++.+.++.+|++.|++++|+.      +..++++++|..+   +..+.+++|.|..+|..+|+|..
T Consensus       317 ~~~~~~~---~~l~~~~~~~~~~v~l~~~~~~~~~------~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~  387 (504)
T 1sez_A          317 RGNPFLL---NFIPEVDYVPLSVVITTFKRENVKY------PLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVY  387 (504)
T ss_dssp             SSSBCCC---TTSCCCCEEEEEEEEEEEEGGGBSS------CCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEE
T ss_pred             cCCcccH---HHHhcCCCCceEEEEEEEchhhcCC------CCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCE
Confidence               2222   2367788889999999999998864      3467788887544   23567788888888888888888


Q ss_pred             EEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCE
Q 014922          301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGL  380 (416)
Q Consensus       301 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l  380 (416)
                      ++++|+++..+..+..++++++++.++++|++++|..  .+|..+.+++|.+++|+|.+|+......+.....  +++||
T Consensus       388 ~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~--~~~~l  463 (504)
T 1sez_A          388 LYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEK--NLPGL  463 (504)
T ss_dssp             EEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHH--HSTTE
T ss_pred             EEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHH--hCCCE
Confidence            8999998877666778899999999999999999864  4688889999999999999999876665544433  57899


Q ss_pred             EEeeccCCCCchhHHHHHHHHHHHHHHHHhhhccc
Q 014922          381 FLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAY  415 (416)
Q Consensus       381 ~~aG~~~~g~~~~~ai~sg~~aA~~il~~l~~~~~  415 (416)
                      ||||+++.|.++++|+.||++||++|+..+.+...
T Consensus       464 ~~aG~~~~g~~v~gai~sG~~aA~~il~~l~~~~~  498 (504)
T 1sez_A          464 FYAGNHRGGLSVGKALSSGCNAADLVISYLESVST  498 (504)
T ss_dssp             EECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC-
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999889999999999999999999877654
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Back     alignment and structure
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Back     alignment and structure
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Back     alignment and structure
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Back     alignment and structure
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Back     alignment and structure
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Back     alignment and structure
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Back     alignment and structure
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Back     alignment and structure
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Back     alignment and structure
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Back     alignment and structure
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Back     alignment and structure
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2ivda2108 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {M 2e-26
d1seza2112 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {T 5e-23
d2ivda1347 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox 5e-17
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 108 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score =  100 bits (250), Expect = 2e-26
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
           Y P+A V + +    +           GFG L P  +    LG I++S+ FP RA  GRV
Sbjct: 2   YAPIAVVHLGFDAGTLPA-------PDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRV 54

Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKML-INPNAKDPLVLGVRVWQQAIPQ 356
           L    +GGA   G++ + E  L      +L+ +  +      P    V  W   IPQ
Sbjct: 55  LYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTA---RPSFTRVFRWPLGIPQ 108
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 112 Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.75
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.68
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.52
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.25
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 99.07
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 98.88
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.69
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 98.63
d2dw4a3109 Lysine-specific histone demethylase 1, LSD1 {Human 98.35
d2iida2113 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.29
d1b5qa2112 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 98.26
d1vg0a1491 Rab escort protein 1 {Rat (Rattus norvegicus) [Tax 98.16
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 98.05
d2bi7a1314 UDP-galactopyranose mutase, N-terminal domain {Kle 97.96
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 97.23
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 97.02
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 96.86
d1i8ta1298 UDP-galactopyranose mutase, N-terminal domain {Esc 96.82
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 96.48
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 96.46
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 96.32
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 96.32
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 96.25
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 96.2
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 96.04
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 95.96
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 95.69
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 95.69
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 95.64
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 95.37
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 95.37
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 95.32
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 95.15
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 94.55
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 94.35
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 94.32
d1lvla2115 Dihydrolipoamide dehydrogenase {Pseudomonas putida 94.09
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 93.84
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 93.72
d3grsa2125 Glutathione reductase {Human (Homo sapiens) [TaxId 93.03
d1h6va2122 Mammalian thioredoxin reductase {Rat (Rattus norve 91.54
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 91.47
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 91.13
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 91.01
d1y0pa2308 Flavocytochrome c3 (respiratory fumarate reductase 90.5
d1d4ca2322 Flavocytochrome c3 (respiratory fumarate reductase 88.02
d1qo8a2317 Flavocytochrome c3 (respiratory fumarate reductase 87.22
d1nhpa1198 NADH peroxidase {Enterococcus faecalis [TaxId: 135 86.59
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 86.56
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 85.43
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 84.87
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 81.9
d1xhca2122 NADH oxidase /nitrite reductase {Pyrococcus furios 81.51
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 80.87
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.75  E-value=2e-18  Score=129.99  Aligned_cols=107  Identities=32%  Similarity=0.546  Sum_probs=97.4

Q ss_pred             CCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHH
Q 014922          241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKES  320 (416)
Q Consensus       241 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~  320 (416)
                      |.++++|+++|+++.+.       ...|||+|+|..++..++|++|+|++||+++|+|+.++++|+||..+..+...+|+
T Consensus         2 Ya~vavV~l~~~~~~~~-------~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~   74 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLP-------APDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDED   74 (108)
T ss_dssp             BCCEEEEEEEECTTSSC-------CCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHH
T ss_pred             CCCEEEEEEEEcHHHCC-------CCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHH
Confidence            78999999999987553       23789999999999999999999999999999999999999999888778889999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCC
Q 014922          321 ELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQ  356 (416)
Q Consensus       321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~  356 (416)
                      ++++.++++|++++|..  .+|....++||++++||
T Consensus        75 ~l~~~a~~dL~~~lgi~--~~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          75 ALAALAREELKALAGVT--ARPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             HHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCBC
T ss_pred             HHHHHHHHHHHHHhCCC--CCCcEEEeeECCCCcCc
Confidence            99999999999999975  47999999999999986
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure