Citrus Sinensis ID: 014925

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDESP
cccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHccccccHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHccccccc
cccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcEEHccccccEEEEEccccccccHHcccccEEccccccEEEEEccccEEEEEEEccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccHHHHHcccccc
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCnfssrkypskssvftpircGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEqlqlddidvpltnirpvkKVAIVIITgdrglcggfNKAVIKKAENRMVELKDMGLDCVVISvgkkgnayfrhrSNVSVIRciegegfytvkEAQTIADNVFSLFVSEEVDKVELVYTKFVSlvksdpvihtllplsmkgvicnengmcvDAVEDELFRLTTNEGKMIVErdsvtfnkgelsplmlfeqdPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRlrvpsfhghvSFLHIIWLNHCldcvncrtmwdvlqldesp
MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSrkypskssvftpircGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQeavissrpfVEKLVEFLYVINEQlqlddidvpltnirpVKKVAIVIItgdrglcggfNKAVIKKAENRMVELKDMGLDCVVISVGkkgnayfrhrsnvsVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFvslvksdpvihTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDESP
MSCSYLTTWVssksnlsshllhlnqnsVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDESP
****YLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQE****************************VAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQL****
**************************************************CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQ**DI***LTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNE**************GELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLD***
***********SKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDESP
**CSYL**W************************************FTPI*CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDE**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
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MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLCNFSSRKYPSKSSVFTPIRCGxxxxxxxxxxxxxxxxxxxxxKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAxxxxxxxxxxxxxxxxxxxxxERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVSFLHIIWLNHCLDCVNCRTMWDVLQLDESP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
P29790377 ATP synthase gamma chain, N/A no 0.894 0.986 0.670 1e-139
Q01908373 ATP synthase gamma chain yes no 0.889 0.991 0.658 1e-138
Q01909386 ATP synthase gamma chain no no 0.805 0.867 0.712 1e-138
P28552376 ATP synthase gamma chain, N/A no 0.870 0.962 0.642 1e-134
P05435364 ATP synthase gamma chain, N/A no 0.810 0.925 0.674 1e-133
P0C1M0359 ATP synthase subunit gamm N/A no 0.802 0.930 0.666 1e-130
P12113358 ATP synthase gamma chain, N/A no 0.776 0.902 0.541 1e-103
Q3M9W1315 ATP synthase gamma chain yes no 0.75 0.990 0.548 1e-96
P12408315 ATP synthase gamma chain yes no 0.75 0.990 0.545 7e-96
B2J059315 ATP synthase gamma chain yes no 0.752 0.993 0.515 8e-92
>sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1 Back     alignment and function desciption
 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/376 (67%), Positives = 299/376 (79%), Gaps = 4/376 (1%)

Query: 1   MSCSYLTTWVSSKSNLSSHLLHLNQNSVDYLC----NFSSRKYPSKSSVFTPIRCGLREL 56
           MSCS LT  VSSK +LS       ++SV        N S    PS+SS  TP+ CGLR+L
Sbjct: 1   MSCSNLTMLVSSKPSLSDSSALSFRSSVSPFQLPNHNTSGPSNPSRSSSVTPVHCGLRDL 60

Query: 57  KERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDV 116
           ++R+ +VKNTQKITEAMKLVAAA+VR+AQEAV+ +RPF E LVE LY INEQLQ DDIDV
Sbjct: 61  RDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDV 120

Query: 117 PLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAY 176
           PLT +RPVKKVA+V++TGDRGLCGGFN  +IKKAE R+ +LK +G+D  +ISVGKKGN+Y
Sbjct: 121 PLTKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIRDLKALGIDYTIISVGKKGNSY 180

Query: 177 FRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVI 236
           F  R  + V + +EG    T K+AQ IAD+VFSLFVSEEVDKVEL+YTKFVSLVKS+PVI
Sbjct: 181 FIRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVI 240

Query: 237 HTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQD 296
           HTLLPLS KG IC+ NG CVDA  DE FRLTT EGK+ VERD +     + SP++ FEQD
Sbjct: 241 HTLLPLSPKGEICDINGNCVDAANDEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQD 300

Query: 297 PAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQA 356
           P QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA ELKKNLS  YN++RQA
Sbjct: 301 PVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQA 360

Query: 357 KITGELLEIVAGAEAL 372
           KITGE+LEIVAGA+AL
Sbjct: 361 KITGEILEIVAGADAL 376
Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
Nicotiana tabacum (taxid: 4097)
>sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1 Back     alignment and function description
>sp|Q01909|ATPG2_ARATH ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1 Back     alignment and function description
>sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1 Back     alignment and function description
>sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2 Back     alignment and function description
>sp|P0C1M0|ATPG_MAIZE ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|P12113|ATPG_CHLRE ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1 Back     alignment and function description
>sp|Q3M9W1|ATPG_ANAVT ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|P12408|ATPG_NOSS1 ATP synthase gamma chain OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=atpG PE=3 SV=2 Back     alignment and function description
>sp|B2J059|ATPG_NOSP7 ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
255569659381 ATP synthase gamma chain 2, chloroplast, 0.901 0.984 0.681 1e-145
449454742373 PREDICTED: ATP synthase gamma chain, chl 0.896 1.0 0.680 1e-144
307136215373 ATP synthase [Cucumis melo subsp. melo] 0.896 1.0 0.675 1e-143
225444525372 PREDICTED: ATP synthase gamma chain, chl 0.891 0.997 0.698 1e-142
224078604375 predicted protein [Populus trichocarpa] 0.896 0.994 0.666 1e-140
356548953375 PREDICTED: ATP synthase gamma chain, chl 0.889 0.986 0.683 1e-139
255554879376 ATP synthase gamma chain 2, chloroplast, 0.879 0.973 0.658 1e-138
388519673374 unknown [Medicago truncatula] 0.879 0.978 0.656 1e-138
449433954371 PREDICTED: ATP synthase gamma chain, chl 0.786 0.881 0.721 1e-138
356555666368 PREDICTED: ATP synthase gamma chain, chl 0.798 0.902 0.723 1e-137
>gi|255569659|ref|XP_002525795.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] gi|223534945|gb|EEF36631.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/380 (68%), Positives = 308/380 (81%), Gaps = 5/380 (1%)

Query: 1   MSCSYLTTWVS---SKSNLSSHLLHLNQNSVDYLCNFSS--RKYPSKSSVFTPIRCGLRE 55
           MS S LT WV+   SK   SS       N   +L   S     +    S  +PI CGLRE
Sbjct: 1   MSSSNLTMWVNPKPSKFETSSLSFRFQANPFRHLARISHLYNTFSQSYSYSSPIHCGLRE 60

Query: 56  LKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDID 115
           L+ER++TVKNTQKITEAMKLVAAA++R+AQEAVI+ RPF E L+E LY INEQLQL+DID
Sbjct: 61  LRERISTVKNTQKITEAMKLVAAAKIRRAQEAVINGRPFAESLLEVLYHINEQLQLEDID 120

Query: 116 VPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNA 175
           VPLTN+RPVK+VA+V++TGDRGLCGGFN AV++KAE RM+EL++MGLDC VISVGKKGNA
Sbjct: 121 VPLTNVRPVKRVALVVVTGDRGLCGGFNNAVLRKAETRMMELENMGLDCSVISVGKKGNA 180

Query: 176 YFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPV 235
           YF+ R N  V + IEG+ F T KEAQ IAD+VFSLFVSEEVDKVEL+YTKFVSLVKSDPV
Sbjct: 181 YFKRRGNACVDKFIEGDSFPTAKEAQLIADDVFSLFVSEEVDKVELMYTKFVSLVKSDPV 240

Query: 236 IHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQ 295
           I TLLPLS +G +C+ NG CVDA +DE FRLT+ EGK+ VER+S   N+  + PLM FEQ
Sbjct: 241 IRTLLPLSPRGGVCDVNGKCVDAADDEFFRLTSKEGKLAVERESGKANREGILPLMQFEQ 300

Query: 296 DPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQ 355
           DP QILDAMMPLY+NSQILRALQES ASE+AARM+AMS ATDNA +L+K+LS+AYN+ERQ
Sbjct: 301 DPIQILDAMMPLYLNSQILRALQESLASELAARMNAMSNATDNAVDLQKSLSIAYNRERQ 360

Query: 356 AKITGELLEIVAGAEALTQI 375
           +KITGE+LEIVAGAEALT++
Sbjct: 361 SKITGEILEIVAGAEALTEL 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454742|ref|XP_004145113.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449474626|ref|XP_004154236.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449488358|ref|XP_004158011.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136215|gb|ADN34052.1| ATP synthase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|225444525|ref|XP_002275015.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078604|ref|XP_002305572.1| predicted protein [Populus trichocarpa] gi|118489494|gb|ABK96549.1| unknown [Populus trichocarpa x Populus deltoides] gi|222848536|gb|EEE86083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548953|ref|XP_003542863.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Glycine max] gi|356548955|ref|XP_003542864.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 2 [Glycine max] gi|356548957|ref|XP_003542865.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 3 [Glycine max] gi|356548959|ref|XP_003542866.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|255554879|ref|XP_002518477.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] gi|223542322|gb|EEF43864.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388519673|gb|AFK47898.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449433954|ref|XP_004134761.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449479457|ref|XP_004155604.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356555666|ref|XP_003546151.1| PREDICTED: ATP synthase gamma chain, chloroplastic [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2036149386 ATPC2 [Arabidopsis thaliana (t 0.783 0.844 0.733 2.4e-122
TAIR|locus:2135054373 ATPC1 [Arabidopsis thaliana (t 0.889 0.991 0.639 4.6e-121
UNIPROTKB|P17253314 atpG "ATP synthase gamma chain 0.747 0.990 0.496 9.3e-75
TIGR_CMR|CHY_2546282 CHY_2546 "ATP synthase F1, gam 0.439 0.648 0.382 7.6e-44
TIGR_CMR|GSU_0112287 GSU_0112 "ATP synthase F1, gam 0.468 0.679 0.33 7.6e-44
TIGR_CMR|DET_0563285 DET_0563 "ATP synthase F1, gam 0.439 0.642 0.355 2.2e-42
UNIPROTKB|P0ABA6287 atpG [Escherichia coli K-12 (t 0.449 0.651 0.310 3.7e-41
UNIPROTKB|Q9KNH4288 atpG "ATP synthase gamma chain 0.449 0.649 0.331 8.7e-41
TIGR_CMR|VC_2765288 VC_2765 "ATP synthase F1, gamm 0.449 0.649 0.331 8.7e-41
TIGR_CMR|SPO_3163291 SPO_3163 "ATP synthase F1, gam 0.459 0.656 0.323 1.3e-39
TAIR|locus:2036149 ATPC2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 240/327 (73%), Positives = 277/327 (84%)

Query:    49 IRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQ 108
             IR G+REL+ER+++VKNTQKITEAM+LVAAARVR+AQ+AVI  RPF E LVE LY IN+ 
Sbjct:    59 IRAGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQS 118

Query:   109 LQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVIS 168
              QL+DID PL+ +RPVK+VA+V++TGD+GLCGGFN AV KKA  R+ ELK  G+DCVVIS
Sbjct:   119 AQLEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVIS 178

Query:   169 VGKKGNAYFRHRSNVSVIRCIEGEG-FYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFV 227
             VGKKGNAYF  R    V +CIEG G F T KEAQ IAD+VFSLFVSEEVDKVELVYTKFV
Sbjct:   179 VGKKGNAYFSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFV 238

Query:   228 SLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287
             SLVKSDPVIHTLLPLSMKG  C+  G CVDA+EDE+FRLT+ +GK+ VER  +   K E+
Sbjct:   239 SLVKSDPVIHTLLPLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPEI 298

Query:   288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
             SPLM FEQDP QILDAMMPLY+NSQILRALQES ASE+A+RM+AMS ATDNA ELKKNL+
Sbjct:   299 SPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLT 358

Query:   348 VAYNQERQAKITGELLEIVAGAEALTQ 374
             +AYN+ RQAKITGELLEIVAGAEAL +
Sbjct:   359 MAYNRARQAKITGELLEIVAGAEALRE 385
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;TAS
GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0009544 "chloroplast ATP synthase complex" evidence=TAS
GO:0030234 "enzyme regulator activity" evidence=TAS
GO:2000067 "regulation of root morphogenesis" evidence=IMP
TAIR|locus:2135054 ATPC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P17253 atpG "ATP synthase gamma chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2546 CHY_2546 "ATP synthase F1, gamma subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0112 GSU_0112 "ATP synthase F1, gamma subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0563 DET_0563 "ATP synthase F1, gamma subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABA6 atpG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNH4 atpG "ATP synthase gamma chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2765 VC_2765 "ATP synthase F1, gamma subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3163 SPO_3163 "ATP synthase F1, gamma subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29790ATPG_TOBACNo assigned EC number0.67020.89420.9867N/Ano
B0BZL3ATPG_ACAM1No assigned EC number0.50770.74510.9779yesno
Q8DLU1ATPG_THEEBNo assigned EC number0.50150.750.9904yesno
P08450ATPG_SYNP6No assigned EC number0.50760.74510.9810yesno
P0C1M0ATPG_MAIZENo assigned EC number0.66660.80280.9303N/Ano
B1XHY7ATPG_SYNP2No assigned EC number0.50460.74510.9872yesno
B0JWV2ATPG_MICANNo assigned EC number0.50150.74750.9873yesno
P12408ATPG_NOSS1No assigned EC number0.54510.750.9904yesno
B1WUI3ATPG_CYAA5No assigned EC number0.50620.74750.9904yesno
B8HPK2ATPG_CYAP4No assigned EC number0.51860.75240.9936yesno
Q3M9W1ATPG_ANAVTNo assigned EC number0.54820.750.9904yesno
B2J059ATPG_NOSP7No assigned EC number0.51540.75240.9936yesno
B7KKR3ATPG_CYAP7No assigned EC number0.50930.74750.9904yesno
P05435ATPG_SPIOLNo assigned EC number0.67440.81000.9258N/Ano
Q01909ATPG2_ARATHNo assigned EC number0.71260.80520.8678nono
Q01908ATPG1_ARATHNo assigned EC number0.65860.88940.9919yesno
Q31RF0ATPG_SYNE7No assigned EC number0.50760.74510.9810yesno
P28552ATPG_PEANo assigned EC number0.64260.87010.9627N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040033
SubName- Full=Putative uncharacterized protein;; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (By similarity) (376 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PtrAtpB_1
RecName- Full=ATP synthase subunit beta; EC=3.6.3.14;; Produces ATP from ADP in the presence of [...] (560 aa)
• ••••• 0.927
estExt_Genewise1_v1.C_LG_VIII1306
hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the mem [...] (560 aa)
• ••••• 0.927
atpA
RecName- Full=ATP synthase subunit alpha; Short=ATPase subunit alpha; EC=3.6.3.14; AltName- Ful [...] (287 aa)
• ••• • 0.911
fgenesh4_pg.C_scaffold_12167000001
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across th [...] (310 aa)
• ••• • 0.901
grail3.0023015401
SubName- Full=Putative uncharacterized protein; (216 aa)
     •  0.899
fgenesh4_pm.C_LG_II000842
inorganic pyrophosphatase (EC-3.6.1.1) (215 aa)
     •  0.899
fgenesh4_pg.C_LG_VII001101
SubName- Full=Putative uncharacterized protein; (213 aa)
     •  0.899
eugene3.00090843
inorganic pyrophosphatase (EC-3.6.1.1) (298 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_XIV0223
SubName- Full=Putative uncharacterized protein; (216 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_XIII0040
vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 1e-113
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 1e-112
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 1e-107
pfam00231288 pfam00231, ATP-synt, ATP synthase 1e-104
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 1e-97
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 7e-72
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 1e-63
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 4e-63
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 2e-62
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 4e-59
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 9e-57
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 2e-51
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 4e-38
TIGR03323285 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, 3e-18
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information 
 Score =  333 bits (856), Expect = e-113
 Identities = 127/322 (39%), Positives = 187/322 (58%), Gaps = 41/322 (12%)

Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQL 111
            L+E++ R+ +VKNTQKIT+AM++VAA+++RKAQE   +SRP+ EK+ +   VI+     
Sbjct: 3   SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRK---VISHLASA 59

Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
            + D PL   R VK+V  +++T DRGLCGG+N  +IKK    + EL+  G +  +I +G+
Sbjct: 60  SEYDHPLLVEREVKRVGYIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGR 119

Query: 172 KGNAYFRHRSNVSVIRCIEGEGFY-TVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
           KG  +F+ R  ++V+    G G   T +EA  IA  +   + + E D++ +VY KFV+ +
Sbjct: 120 KGVDFFKRR-GINVVAEYTGLGDQPTFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTL 178

Query: 231 KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290
             +P +  LLPL                 E+E                     + E S  
Sbjct: 179 SQEPTVEQLLPLE---------------KEEE---------------------EEETSWD 202

Query: 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAY 350
             +E D  +ILDA++P Y+ SQI +AL E+ ASE AARM+AM  ATDNA +L K L++ Y
Sbjct: 203 YEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVY 262

Query: 351 NQERQAKITGELLEIVAGAEAL 372
           N+ RQA IT E+ EIV GAEAL
Sbjct: 263 NRARQAAITQEITEIVGGAEAL 284

Length = 284
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 100.0
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 100.0
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 100.0
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 100.0
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 100.0
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 100.0
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 100.0
KOG1531304 consensus F0F1-type ATP synthase, gamma subunit [E 100.0
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-84  Score=634.30  Aligned_cols=286  Identities=43%  Similarity=0.642  Sum_probs=262.2

Q ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccC-CCCceEEEEEE
Q 014925           54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNI-RPVKKVAIVII  132 (416)
Q Consensus        54 keIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~-~~~k~~~lIVI  132 (416)
                      ++||+||+||++|+|||+||||||+||+||+|+++.+.+||++++.+++.++...  ..+.+||++.. +++|++++|||
T Consensus         1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi   78 (287)
T COG0224           1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI   78 (287)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence            5899999999999999999999999999999999999999999999999999875  22357898776 78999999999


Q ss_pred             eCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHhhhh
Q 014925          133 TGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV  212 (416)
Q Consensus       133 tSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~~~~  212 (416)
                      |||||||||||+||+|.+...++++.++|.++.+++||+||.+||++++..++..+.++++.|+++.+..|++.+++.|.
T Consensus        79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~  158 (287)
T COG0224          79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL  158 (287)
T ss_pred             ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999899999999999999999887777777788888999999999999999999


Q ss_pred             cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCCcc
Q 014925          213 SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML  292 (416)
Q Consensus       213 ~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (416)
                      +|++|+|+|+||+|+|+++|+|++++|||+++.+.           ..+.                 .  ++.  ..+|+
T Consensus       159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~-----------~~~~-----------------~--~~~--~~~~e  206 (287)
T COG0224         159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED-----------EAEE-----------------E--EPG--LWDYE  206 (287)
T ss_pred             CCCCceEEEEecccccceeeeeeeEEEecCCcccc-----------hhhh-----------------c--ccc--cccee
Confidence            99999999999999999999999999999986220           0000                 0  000  14789


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Q 014925          293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL  372 (416)
Q Consensus       293 fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAeAL  372 (416)
                      ||||+++||+.|+|+|+.++||+|++||.||||+|||+||++|||||+|||++|++.|||+||++|||||+|||+||+||
T Consensus       207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL  286 (287)
T COG0224         207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL  286 (287)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 014925          373 T  373 (416)
Q Consensus       373 ~  373 (416)
                      +
T Consensus       287 ~  287 (287)
T COG0224         287 E  287 (287)
T ss_pred             C
Confidence            4

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
2qe7_G286 Crystal Structure Of The F1-Atpase From The Thermoa 1e-46
3oaa_G286 Structure Of The E.Coli F1-Atp Synthase Inhibited B 2e-39
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 3e-24
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 1e-23
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 4e-23
1fs0_G230 Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le 5e-23
2f43_G273 Rat Liver F1-atpase Length = 273 2e-20
1mab_G270 Rat Liver F1-Atpase Length = 270 2e-20
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 2e-20
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 4e-20
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 4e-20
1ohh_G100 Bovine Mitochondrial F1-Atpase Complexed With The I 2e-07
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 173/322 (53%), Gaps = 40/322 (12%)
Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQL 111
           G+RE+K R+ +VKNT++IT+AMK+VAAA++R+AQE   ++RP+ +K+ E +  I    + 
Sbjct: 3   GMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTK- 61
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
            D   P+   RPVKK   ++IT DRGL G +N  +++     + E      + V+ +VG+
Sbjct: 62  -DFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGR 120
Query: 172 KGNAYFRHRSNVSVIRCIEG-EGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
           KG  +F+ R    V+  + G     ++ E Q IA +   +F  E  DK+ + Y +FVS +
Sbjct: 121 KGRDFFKKR-GYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPI 179
Query: 231 KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290
              PV   LLPL+ + V+       V A E                              
Sbjct: 180 VQRPVEKQLLPLTSEEVLDG----PVSAYE------------------------------ 205
Query: 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAY 350
             +E D   +L+ ++P Y  + I  AL ++ ASE  ARM+AM  ATDNA E+ + L++ +
Sbjct: 206 --YEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQF 263
Query: 351 NQERQAKITGELLEIVAGAEAL 372
           N+ RQA IT E+ EIVAGA AL
Sbjct: 264 NRARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 1e-111
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 1e-108
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 1e-98
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 2e-98
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 4e-98
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 1e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
 Score =  325 bits (837), Expect = e-111
 Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 44/325 (13%)

Query: 52  GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQ- 110
           G +E++ ++ +V+NTQKIT+AM++VAA+++RK+Q+ + +SRP+ E + +   VI      
Sbjct: 2   GAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRK---VIGHLAHG 58

Query: 111 LDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVG 170
             +   P    R VK+V  ++++ DRGLCGG N  + KK    M    D G+ C +  +G
Sbjct: 59  NLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIG 118

Query: 171 KKGNAYFRHRSNVSVIRCIEGEGFY---TVKEAQTIADNVFSLFVSEEVDKVELVYTKFV 227
            KG ++F      +V+   +  G     ++ E       +   +    +DK+ +V  KF+
Sbjct: 119 SKGVSFFN-SVGGNVV--AQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFI 175

Query: 228 SLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287
           + +   P I  LLPL               A +D+                    +    
Sbjct: 176 NTMSQVPTISQLLPLP--------------ASDDD--------------------DLKHK 201

Query: 288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
           S   L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L 
Sbjct: 202 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261

Query: 348 VAYNQERQAKITGELLEIVAGAEAL 372
           + YN+ RQA IT EL EIV+GA A+
Sbjct: 262 LVYNKARQASITQELTEIVSGAAAV 286
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 100.0
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 100.0
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 100.0
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 100.0
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 100.0
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
Probab=100.00  E-value=2.8e-85  Score=643.92  Aligned_cols=286  Identities=35%  Similarity=0.555  Sum_probs=259.7

Q ss_pred             ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEEE
Q 014925           51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIV  130 (416)
Q Consensus        51 a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~lI  130 (416)
                      |+|+|||+||+||+||+|||+||||||+||+||||+++.+.|||++++.+++.++.....  +.+||++..++.+++++|
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~I   78 (286)
T 3oaa_G            1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNL--EYKHPYLEDRDVKRVGYL   78 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT--TTCCSSCSCCCCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCc--cccCcccccCCCCcEEEE
Confidence            589999999999999999999999999999999999999999999999999999987532  346899888888999999


Q ss_pred             EEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHhh
Q 014925          131 IITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSL  210 (416)
Q Consensus       131 VItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~~  210 (416)
                      |||||||||||||+||+|.+.+.++++...|.++.+++||+||.+||++++...+..+.+.++.|++.++..|++.+++.
T Consensus        79 vitSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~  158 (286)
T 3oaa_G           79 VVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQA  158 (286)
T ss_dssp             EECCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHHHHHH
T ss_pred             EEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988777777899999999999999988766566665777889999999999999999


Q ss_pred             hhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 014925          211 FVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL  290 (416)
Q Consensus       211 ~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (416)
                      |.+|++|+|+|+||+|+|+++|+|+.++|||+++.+             .++   .                  ...+.+
T Consensus       159 ~~~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~-------------~~~---~------------------~~~~~~  204 (286)
T 3oaa_G          159 YDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD-------------DDD---L------------------KHKSWD  204 (286)
T ss_dssp             HHTTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCH-------------HHH---S------------------CCCSCC
T ss_pred             HhcCCCCEEEEEEcccccccccceeEEEecCCCccc-------------ccc---c------------------ccCCCC
Confidence            999999999999999999999999999999998621             000   0                  001235


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Q 014925          291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE  370 (416)
Q Consensus       291 ~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAe  370 (416)
                      |+|||+++++|+.|+|.||+++||+|++||.||||+|||+||++|||||+|||++|+++|||+||++||+||+|||+||+
T Consensus       205 ~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~  284 (286)
T 3oaa_G          205 YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAA  284 (286)
T ss_dssp             CEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 014925          371 AL  372 (416)
Q Consensus       371 AL  372 (416)
                      ||
T Consensus       285 Al  286 (286)
T 3oaa_G          285 AV  286 (286)
T ss_dssp             --
T ss_pred             hC
Confidence            86
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 2e-60
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 6e-50
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  195 bits (496), Expect = 2e-60
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 50/320 (15%)

Query: 53  LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLD 112
           L+++  RL ++KN QKIT++MK+VAAA+  +A+  +  +R +    +             
Sbjct: 3   LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALY---------- 52

Query: 113 DIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK 172
                +      KK  I+ ++ DRGLCG  + +V K+ ++    L   G +  +I VG K
Sbjct: 53  -EKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 111

Query: 173 GNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKS 232
             +      +   +   +  G             +  L    E D+  +++ +F S++  
Sbjct: 112 IRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISY 171

Query: 233 DPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML 292
                                                      +             + +
Sbjct: 172 KTE---------------------------------------EKPIFSLDTISSAESMSI 192

Query: 293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQ 352
           ++   A +L       + + I  +L+ES  SE +ARM+AM  A+ NA E+   L++ +N+
Sbjct: 193 YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 252

Query: 353 ERQAKITGELLEIVAGAEAL 372
            RQA IT EL+EI++GA AL
Sbjct: 253 TRQAVITKELIEIISGAAAL 272
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 100.0
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 100.0
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.8e-75  Score=559.30  Aligned_cols=270  Identities=28%  Similarity=0.417  Sum_probs=170.9

Q ss_pred             ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEEE
Q 014925           51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIV  130 (416)
Q Consensus        51 a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~lI  130 (416)
                      |+|+|||+||+||++|+|||+||||||+||+||||+++.+.|||+.....++.+.           ++..+++.+++++|
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~-----------~~~~~~~~~~~l~I   69 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKA-----------DIKTPEDKKKHLII   69 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------------------CCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHhhccc-----------cchhccccccceeE
Confidence            6899999999999999999999999999999999999999999987655443321           22333456778999


Q ss_pred             EEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceee-eeecC-CCCCHHHHHHHHHHHH
Q 014925          131 IITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIR-CIEGE-GFYTVKEAQTIADNVF  208 (416)
Q Consensus       131 VItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~-~~~~~-~~p~~~~a~~I~~~li  208 (416)
                      |||||||||||||++|+|++.+.+.++..+|.++.++++|+||.+++.+.+...+.. +...+ ..+++..+..+...+.
T Consensus        70 vitSDrGLcG~fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  149 (272)
T d2jdig1          70 GVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELL  149 (272)
T ss_dssp             CBCCSCCCSTTHHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-
T ss_pred             EEecCCCCCCCccccHHHHHHHHHHHhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHH
Confidence            999999999999999999999999888877888889999999999998755333333 33333 4577888777766665


Q ss_pred             hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 014925          209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS  288 (416)
Q Consensus       209 ~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  288 (416)
                      ..  .+++|+|+|+||+|+|.++|.|..++|+|+++.+.                                       ..
T Consensus       150 ~~--~~~~d~v~i~y~~f~~~~~q~p~~~~l~p~~~~~~---------------------------------------~~  188 (272)
T d2jdig1         150 NS--GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISS---------------------------------------AE  188 (272)
T ss_dssp             -----------CCCCCEECSSSCEECC-----------------------------------------------------
T ss_pred             Hh--hhhcceeEEEeecccccccccceeecccccccccc---------------------------------------cc
Confidence            43  47899999999999999999999999999876210                                       01


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 014925          289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG  368 (416)
Q Consensus       289 ~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsG  368 (416)
                      ..+.|||+++++|+.|+|.||+++||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus       189 ~~~~~~~~~~~vl~~l~~~yl~~~ly~a~~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~G  268 (272)
T d2jdig1         189 SMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG  268 (272)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 014925          369 AEAL  372 (416)
Q Consensus       369 AeAL  372 (416)
                      ||||
T Consensus       269 aeAl  272 (272)
T d2jdig1         269 AAAL  272 (272)
T ss_dssp             HHTC
T ss_pred             HhhC
Confidence            9996
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure