Citrus Sinensis ID: 014956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MDTSSSSSASAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIPHFEGNNSSFKQPATKTSASTDSKRGE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHccHcHEEEEEEEHcccHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHcccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHcccHHcccccHHHcccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdtsssssasaaapsavtFYDFLdrmrnpasLDLVRSIKSFIVSFSfnnanpendgkRVQEFFTTMESaikdhplwANATIEAIESAMEGLEKYVMTKLFSrtfastsedvkiDQEISEKICLLQtflrpehldiptFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASIsenvelggaddflPVLIYIIIKanppqlhsnIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIeesttsngiktlgeqghperhdvtRIEASAMSNDRKSLEEQrrvgpsqriygnntitsggygypfmeaeasrlttgDVEKLLSVYKDVVRKYTNLCRavrhvsvpmtvapiphfegnnssfkqpatktsastdskrge
Flexible Loop (DISEMBL)
mdtsssssasaaapsaVTFYDFLDRMRNPASLDLVRSIKSFIVSFsfnnanpendgKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFAstsedvkidQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTlieesttsngiktlgeqghperhdVTRIeasamsndrksleeqrrvgpsqriygnntitsggygYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLcravrhvsvpMTVAPIPHfegnnssfkqpatktsastdskrge
Low Complexity Region (SEG)
MDTsssssasaaapsaVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVlcimnccriinnlllnASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIPHFEGNNSSFKQPATKTSASTDSKRGE
Disordered region (IsUnstruct)
***************AVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNA*******RVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNA***************************************************************************IYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIPH*************************
Disordered Region (DISOPRED)
********************DFLDRMRNPASLDLVRSIKSFIV****************QEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDL**********************************************************************************************EAEA***********LSVYKDVVRK***********************************************
Disordered Region (DISEMBL)
*************PSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASA**************GPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIPHFEGNNSS******************
Disordered Region (DISPRO)
***************AVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNAS********GADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAAR******************************************RKSLEEQRRVGPS*RIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSV**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTSSSSSASAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIPHFEGNNSSFKQPATKTSASTDSKRGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q9LT31	520	Vacuolar protein sorting-	yes	no	0.922	0.736	0.447	2e-95
O74396	572	Vacuolar protein sorting-	yes	no	0.6	0.435	0.313	6e-35
Q14C86	1478	GTPase-activating protein	yes	no	0.496	0.139	0.331	1e-26
A5D794	1413	GTPase-activating protein	yes	no	0.496	0.145	0.331	1e-26
P54787	451	Vacuolar protein sorting-	yes	no	0.585	0.538	0.318	2e-26
Q6PAR5	1458	GTPase-activating protein	yes	no	0.496	0.141	0.327	4e-26
A2RV61	1452	GTPase-activating protein	N/A	no	0.491	0.140	0.330	5e-26
Q9UJ41	708	Rab5 GDP/GTP exchange fac	no	no	0.421	0.247	0.367	3e-25
O18973	492	Rab5 GDP/GTP exchange fac	no	no	0.431	0.363	0.365	7e-25
Q9JM13	491	Rab5 GDP/GTP exchange fac	no	no	0.573	0.484	0.304	1e-24

>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/425 (44%), Positives = 275/425 (64%), Gaps = 42/425 (9%)

Query: 17  VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
           +  +DFL+RMR P++ D V+SIKSFIVSFS N  +PE D   VQEFF+ ME+A + HPLW
Sbjct: 8   LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 67

Query: 77  ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
           +  + E ++SA +GLEKYVMTKLF+R FAS +E+V  D+++ +K+ L+Q F+ PE+LDI 
Sbjct: 68  SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 127

Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADD 195
           PTF QNE+SWLLA+KELQKIN  KAPR+K++CI+NCC++INNLLLNASI+ N    GAD+
Sbjct: 128 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADE 186

Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 246

Query: 256 MEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSL 315
           ++E EFEK+M++AR   +++ ++  T   G  +      P R + T  +  +++  R++ 
Sbjct: 247 LDEAEFEKNMESARA--RISGLDSQTYQTGHGS----APPPRDESTLQKTQSLNPKRENT 300

Query: 316 EEQRRVGPSQRIYGNNTI-------------------TSGG------------YGYPFME 344
             Q +   S  + G N +                     G               YP++ 
Sbjct: 301 LFQSK--SSDSLSGTNELLNINSETPMKKAESISDLENKGATLLKDTEPSKVFQEYPYIF 358

Query: 345 AEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRH-VSVPMTVAPIPHFEGNNSSFKQPAT 403
           A A  L  GDVE LL+ YK +V KY  L + +    S+  + +P+    G N+S +    
Sbjct: 359 ASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSSPLQASSGFNTSKESEDH 418

Query: 404 KTSAS 408
           + S+S
Sbjct: 419 RRSSS 423

Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.
Arabidopsis thaliana (taxid: 3702)

>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps901 PE=1 SV=3

 Score =  149 bits (375), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 154/274 (56%), Gaps = 25/274 (9%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWAN 78
           F+ FL+++R+ ++  + + +KSF+  F+          K +++F   +   I+ +  WA+
Sbjct: 115 FHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWAS 174

Query: 79  ATIEAIESAMEGLEKYVMTKLFSRTFA------------STSEDVKIDQEISEKICLLQT 126
            +   I++A EG+EK V+ +L++  F+              S+DV+ D+ +SEK+ L Q 
Sbjct: 175 GSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ- 233

Query: 127 FLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISE 186
           ++  E+LDI     +   + LA  EL++IN   APR+K++C++NCC++I + L N     
Sbjct: 234 WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNV---- 289

Query: 187 NVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
            V+   AD F+P+LI+++++A P  L SNI++IQ +R    L  E  YY + L+ A +FI
Sbjct: 290 -VKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFI 348

Query: 247 LDLNAKSLSMEETEFE-------KSMQAARLANK 273
             L+  SL++ E EF        K M+  +L+ K
Sbjct: 349 ETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEK 382

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 8/214 (3%)

Query: 36   RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
            + I+ FI  F    A  ++   +V++F   +  A+    +W NA+ E ++ A   +E+ V
Sbjct: 1263 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSV 1321

Query: 96   MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
            M ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E+
Sbjct: 1322 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEI 1381

Query: 153  QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
            + I+A K PR+KV CI+  C  I NLL   S++    + GADDF+PVL++++IKANPP L
Sbjct: 1382 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1438

Query: 213  HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
             S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1439 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1471

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Homo sapiens (taxid: 9606)

>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 8/214 (3%)

Query: 36   RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
            + I+ FI  F    A  ++   +V++F   +  A+    +W NA+ E ++ A   +E+ V
Sbjct: 1198 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSV 1256

Query: 96   MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
            M ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E+
Sbjct: 1257 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSEI 1316

Query: 153  QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
            + I+A K PR+KV CI+  C  I NLL   S++    + GADDF+PVL++++IKANPP L
Sbjct: 1317 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1373

Query: 213  HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
             S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1374 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1406

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Bos taurus (taxid: 9913)

>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1 SV=2

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 143/270 (52%), Gaps = 27/270 (10%)

Query: 19  FYDF---LDRMRNPASLDLVRSIKSFIVSFSFNNA--NPENDGKRVQEFFTTMESAIKDH 73
           FYDF   + +++ P +  LV+  KSF+ +F           + K + +F T +      +
Sbjct: 60  FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLY 119

Query: 74  PLWANATIEAIESAMEGLEKYVMTKLFSRTFAST-------------SEDVKIDQEISEK 120
             + +     + +A EG+EK +M KL+SR F+ +              +D+  D  + EK
Sbjct: 120 EPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEK 179

Query: 121 ICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKVLCIMNCCRIINN 177
           I   + F+ P  LDIP  + N        LA KEL KIN  K+PR+K++C++N  ++I  
Sbjct: 180 IRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFG 238

Query: 178 LLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFT 237
           LL +  + +N    GAD F+PVLIY I+K     L SN+ +I+ +R    +  E  YY +
Sbjct: 239 LLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLS 294

Query: 238 NLVSAKTFILDLNAKSLSMEETE-FEKSMQ 266
           +L +A  FI++L  +SL++E+ E FE++ Q
Sbjct: 295 SLQAALNFIMNLTERSLTIEDHEDFEEAYQ 324

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors. May bind a Rab GTPase such as VPS21.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 36   RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV 95
            + I+ FI  F    A  ++   +V++F   +   +    +W NA+ E ++ A   +E+ V
Sbjct: 1243 KKIREFIQDFQKLTA-ADDKTAQVEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSV 1301

Query: 96   MTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKEL 152
            M ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E+
Sbjct: 1302 MNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEI 1361

Query: 153  QKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQL 212
            + I+A K PR+KV CI+  C  I NLL   S++    + GADDF+PVL++++IKANPP L
Sbjct: 1362 RTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCL 1418

Query: 213  HSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
             S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1419 LSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1451

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Mus musculus (taxid: 10090)

>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 8/212 (3%)

Query: 38   IKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMT 97
            I  FI  F    A  ++   +V+EF  ++  A+    +W NA+ E ++ A   +E+ +M 
Sbjct: 1239 IHEFIQDFQKLTA-ADDKTAQVEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMN 1297

Query: 98   KLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQK 154
            ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E++ 
Sbjct: 1298 RIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRT 1357

Query: 155  INALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHS 214
            I+A K PR+KV CI+  C  I NLL   S++    + GADDF+PVL++++IKANP  L S
Sbjct: 1358 ISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLS 1414

Query: 215  NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
             +++I  +     L+ E +Y++    +A  FI
Sbjct: 1415 TVQYISSFYSN-RLIGEESYWWMQFTAAVEFI 1445

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking.

Xenopus laevis (taxid: 8355)

>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 115/193 (59%), Gaps = 18/193 (9%)

Query: 82  EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLL-----QTFLRPEHLDI 135
           E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L     Q    P + DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478

Query: 136 PTFLQNEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
           P     E S ++ +   ++ ++++ + PR+K+ CI  C + I N +    I++N E   A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASA 529

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
           DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589

Query: 253 SLSMEETEFEKSM 265
           SL++ + +F++ M
Sbjct: 590 SLNLSQEDFDRYM 602

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Homo sapiens (taxid: 9606)

>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 117/189 (61%), Gaps = 10/189 (5%)

Query: 82  EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ 140
           E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P   +
Sbjct: 203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261

Query: 141 -NEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFL 197
             E S ++ +   ++ ++++ + PR+K+ CI  C + I N +    I++N E   ADDFL
Sbjct: 262 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFL 317

Query: 198 PVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSM 256
           P LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+SL++
Sbjct: 318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377

Query: 257 EETEFEKSM 265
            + +F++ M
Sbjct: 378 SQEDFDRYM 386

Rab effector protein acting as linker between gamma-adaptin and RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Bos taurus (taxid: 9913)

>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 140/253 (55%), Gaps = 15/253 (5%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
           F DFL         ++ +  K F+ +  +  + + E   +  Q+F+  +   ++      
Sbjct: 142 FIDFLKTFHKTGQ-EVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTR---G 197

Query: 78  NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
               E +E  M+ +EK++MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P
Sbjct: 198 KVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVP 256

Query: 137 TFLQ-NEASWLLAEK--ELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
              +  E S ++ +   ++ ++++ + PR+K+ CI  C + I N +    I++N E   A
Sbjct: 257 VNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKN-EPASA 312

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
           DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct: 313 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 372

Query: 253 SLSMEETEFEKSM 265
           SL++ + +F++ M
Sbjct: 373 SLNLSQEDFDRYM 385

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A (By similarity). Can act as a ubiquitin ligase.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
225459931	382	PREDICTED: vacuolar protein sorting-asso	0.915	0.994	0.637	1e-146
356510274	375	PREDICTED: vacuolar protein sorting-asso	0.836	0.925	0.592	1e-122
357455969	394	Rab5 GDP/GTP exchange factor [Medicago t	0.814	0.857	0.595	1e-119
224127949	277	predicted protein [Populus trichocarpa]	0.628	0.942	0.747	1e-115
219362927	350	hypothetical protein [Zea mays] gi|19469	0.809	0.96	0.545	1e-112
222626144	351	hypothetical protein OsJ_13323 [Oryza sa	0.797	0.943	0.527	1e-105
357114759	351	PREDICTED: vacuolar protein sorting-asso	0.795	0.940	0.525	1e-102
218194079	308	hypothetical protein OsI_14274 [Oryza sa	0.657	0.886	0.625	6e-99
224082206	396	predicted protein [Populus trichocarpa]	0.857	0.898	0.479	6e-97
225459441	463	PREDICTED: vacuolar protein sorting-asso	0.901	0.807	0.463	3e-96

>gi|225459931|ref|XP_002265083.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/417 (63%), Positives = 308/417 (73%), Gaps = 37/417 (8%)

Query: 1   MDTSSSSSASAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQ 60
           MD SSS          +TFYDFLDRMRNPASLDLVRSIKSFIVSFSF   +PENDGKR+Q
Sbjct: 1   MDASSSQ--------PLTFYDFLDRMRNPASLDLVRSIKSFIVSFSFYAPSPENDGKRLQ 52

Query: 61  EFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEK 120
           +F  TME +I+DHPLW  AT E I+SA+EGLEKYVMTKLFSRTFA++ ED K DQEISEK
Sbjct: 53  DFLLTMEDSIRDHPLWVGATEEEIDSAIEGLEKYVMTKLFSRTFAASPEDAKADQEISEK 112

Query: 121 ICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLL 180
           I LLQ FLRPEHLDIP  LQNEASWLLAEKELQK+NA KAPREK+LCI+NCCR+INNLLL
Sbjct: 113 ISLLQNFLRPEHLDIPAVLQNEASWLLAEKELQKVNAFKAPREKLLCILNCCRVINNLLL 172

Query: 181 NASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLV 240
           NA++SEN  L GADDFLPVLIY+ IKANPPQLHSN+KFIQLYRRQ  LVSE AYYFTNLV
Sbjct: 173 NAAMSENHILAGADDFLPVLIYVTIKANPPQLHSNLKFIQLYRRQEKLVSEVAYYFTNLV 232

Query: 241 SAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDV 300
           SAK+FI+DL+AKSLSM+  EF++SM+AAR A+K   ++ S + +   TL  Q  P     
Sbjct: 233 SAKSFIVDLDAKSLSMDAVEFQESMEAAREAHKAAGVKPSPSLDRTATLAGQMDP----- 287

Query: 301 TRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLS 360
                                GPS+R++   T T G   YPFMEAEA  LT GDVE LLS
Sbjct: 288 ---------------------GPSRRMWFRETDTRGTSNYPFMEAEAGELTVGDVETLLS 326

Query: 361 VYKDVVRKYTNLCRAVRHVSVPMTVAP--IPHFEGNNSSFKQPATKTSASTDSKRGE 415
           +YKDVV KYTNLCRAV+ +S+  T  P  +P  EG ++S  QP  +T+   D KRGE
Sbjct: 327 LYKDVVTKYTNLCRAVKRLSMSKTETPVLVPLSEGTHTSPPQPEGRTTNVND-KRGE 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510274|ref|XP_003523864.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/380 (59%), Positives = 278/380 (73%), Gaps = 33/380 (8%)

Query: 16  AVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPL 75
           + +F+DFL RMR+PASLDLVRSIKSFIVSFSF+   PENDGKRVQ+FF +ME+AI+DH L
Sbjct: 6   STSFHDFLYRMRHPASLDLVRSIKSFIVSFSFHQPKPENDGKRVQDFFVSMEAAIRDHSL 65

Query: 76  WANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI 135
           W  A+ E I+ AM+GLEKY+MTKLFSRTF++++ED KID EIS KICLLQTFL+PEHLDI
Sbjct: 66  WTTASEEDIDCAMQGLEKYIMTKLFSRTFSASAEDAKIDNEISSKICLLQTFLKPEHLDI 125

Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADD 195
           P  LQNEA WLLAEKEL KINA KAP EK+L IMNCCRIINNLLLNA++SE V   GAD 
Sbjct: 126 PPILQNEALWLLAEKELLKINAFKAPHEKLLSIMNCCRIINNLLLNAAMSEYVP-AGADG 184

Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           FLPVLIY+ IKANPP+LHSN+KFI+LY RQA L+SEA YYFTNLVSAKTFI+DLNAKSLS
Sbjct: 185 FLPVLIYVTIKANPPKLHSNLKFIKLYTRQAKLISEAEYYFTNLVSAKTFIVDLNAKSLS 244

Query: 256 MEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSL 315
           M+E ++++SMQAA+L NKVT                         + + A+     + S 
Sbjct: 245 MDEIKYKESMQAAKLTNKVT-------------------------SELSAAC----QMSQ 275

Query: 316 EEQRRVGPSQRIYG---NNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNL 372
           +E      S++++    +  +   G  YP+MEA++  LT GDV+ LLS YKD+V KYT L
Sbjct: 276 QETDDSSCSKKMHNKLDDTGVLLHGSNYPYMEAKSKELTVGDVDMLLSDYKDLVAKYTIL 335

Query: 373 CRAVRHVSVPMTVAPIPHFE 392
           C+A+  +S       + H E
Sbjct: 336 CKAIGCLSTAEREPLLRHLE 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455969|ref|XP_003598265.1| Rab5 GDP/GTP exchange factor [Medicago truncatula] gi|355487313|gb|AES68516.1| Rab5 GDP/GTP exchange factor [Medicago truncatula]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/366 (59%), Positives = 269/366 (73%), Gaps = 28/366 (7%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWAN 78
           F+DFL RMR+P+SLDLVR+IKSFIVSFSF    PENDG+RVQ+FF +ME AI++HPLWA 
Sbjct: 13  FHDFLHRMRHPSSLDLVRAIKSFIVSFSFYQPKPENDGRRVQDFFLSMEVAIRNHPLWAT 72

Query: 79  ATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTF 138
           AT E I+ AMEGLEKY+MTKLFSRTFA++ ED KID EISEKI LLQTFL+PEHLDIP  
Sbjct: 73  ATEEDIDCAMEGLEKYIMTKLFSRTFAASPEDAKIDHEISEKISLLQTFLKPEHLDIPPV 132

Query: 139 LQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLP 198
           L NEASWLLAEKELQKINA KAP+EK+  IMNCCR+INNLLLNA++SE V   GADDF+P
Sbjct: 133 LHNEASWLLAEKELQKINAFKAPQEKLSTIMNCCRVINNLLLNAAMSEYVP-AGADDFIP 191

Query: 199 VLIYIIIK---ANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           VLIY+ IK   ANPP LHSN+KFI+LYRRQ  L+SEA YYFTNLVSAKTFI++LN+KSLS
Sbjct: 192 VLIYVTIKARLANPPMLHSNLKFIKLYRRQTKLISEAEYYFTNLVSAKTFIIELNSKSLS 251

Query: 256 MEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSL 315
           ++E +FE+ MQAA+LA KVT                    E H   +I+    +    S 
Sbjct: 252 IDEIKFEECMQAAKLAKKVT-------------------SELHSACQIKQEVKNESNVSN 292

Query: 316 EEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRA 375
           +   ++   +       +   G  YP+MEAE+  L   DV+ LL+ YKD+V KYT +C+A
Sbjct: 293 KMHNKLDTREF-----HVLQHGTNYPYMEAESKDLAMEDVDILLNHYKDLVAKYTIICKA 347

Query: 376 VRHVSV 381
           + ++S+
Sbjct: 348 INYLSM 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127949|ref|XP_002329217.1| predicted protein [Populus trichocarpa] gi|222870998|gb|EEF08129.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/273 (74%), Positives = 234/273 (85%), Gaps = 12/273 (4%)

Query: 20  YDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANA 79
           YDFLD+MRNPASL+LV+SIKSFIVSF F++ANPEND KRVQEFF+TME+AI +HPLWA A
Sbjct: 1   YDFLDKMRNPASLNLVKSIKSFIVSFQFSSANPENDSKRVQEFFSTMEAAIMEHPLWAGA 60

Query: 80  TIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFL 139
           T +  + +MEGLEKY+MTKLFSRTFA + EDVKIDQEISEKI LLQ+FLRPEHLDIP FL
Sbjct: 61  TDDEFDCSMEGLEKYIMTKLFSRTFAISPEDVKIDQEISEKIHLLQSFLRPEHLDIPPFL 120

Query: 140 QNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPV 199
           QNEASWLLAEKELQKINA +APREK+ CIM+CCRIINNLLLNAS+SEN   GGADDFLPV
Sbjct: 121 QNEASWLLAEKELQKINAFRAPREKLHCIMSCCRIINNLLLNASMSENHVPGGADDFLPV 180

Query: 200 LIYIIIK------------ANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFIL 247
           LIY+ IK            ANPPQLHSN+K+IQLYRRQ  +VSE AYYFTNLVSAK+FI 
Sbjct: 181 LIYVTIKARSPWTNWFFQQANPPQLHSNLKYIQLYRRQEKMVSEPAYYFTNLVSAKSFIG 240

Query: 248 DLNAKSLSMEETEFEKSMQAARLANKVTLIEES 280
            L+AKSLSM+E EFE+SMQAA+L +KV+ +E S
Sbjct: 241 QLDAKSLSMDEIEFEESMQAAKLDSKVSQVEAS 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219362927|ref|NP_001136555.1| hypothetical protein [Zea mays] gi|194696158|gb|ACF82163.1| unknown [Zea mays] gi|414873855|tpg|DAA52412.1| TPA: hypothetical protein ZEAMMB73_530565 [Zea mays]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/376 (54%), Positives = 263/376 (69%), Gaps = 40/376 (10%)

Query: 6   SSSASAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTT 65
           S +++A+ P    FYDFLDRMR PA+ DL RSIKSF+VSFSF+  N E DG +VQ F   
Sbjct: 3   SPTSTASRPD---FYDFLDRMRRPAAADLFRSIKSFLVSFSFHAPNAEEDGSKVQAFLAE 59

Query: 66  MESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQ 125
           MESAI+DHPLWANAT + I+ A+EGLEKYV+TKLF RTF +++ED   D +ISEKI LLQ
Sbjct: 60  MESAIRDHPLWANATDQEIDHALEGLEKYVITKLFDRTFGTSTEDAVTDMDISEKIGLLQ 119

Query: 126 TFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASIS 185
            F++P HLDIP  L NEASWLLA KELQKIN+ KAPREK+LCIMNCC++INNLLLN S+S
Sbjct: 120 QFVKPHHLDIPKVLHNEASWLLAVKELQKINSFKAPREKLLCIMNCCQVINNLLLNISMS 179

Query: 186 ENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTF 245
            +  L GAD+FLP+LIY+ IKANPPQLHSN+KFIQL+RR+  L+SE  YY TNL+SAK F
Sbjct: 180 NDRTLSGADEFLPILIYVTIKANPPQLHSNLKFIQLFRRETKLISEVEYYLTNLISAKMF 239

Query: 246 ILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEA 305
           I+D++A SLSMEE+EF+K M++ARLA +V++   S++         QG P          
Sbjct: 240 IIDVSAHSLSMEESEFQKHMESARLATQVSVASPSSS---------QGLP---------T 281

Query: 306 SAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDV 365
           SA +N  ++                      G  +PFM++E   LT G+V++L  +YK V
Sbjct: 282 SARANQEET-------------------DMAGSRFPFMDSETESLTPGEVKQLHDLYKRV 322

Query: 366 VRKYTNLCRAVRHVSV 381
           V +YT L  A+R  S+
Sbjct: 323 VTRYTLLSEALRKSSI 338

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222626144|gb|EEE60276.1| hypothetical protein OsJ_13323 [Oryza sativa Japonica Group]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/368 (52%), Positives = 250/368 (67%), Gaps = 37/368 (10%)

Query: 15  SAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNN-ANPENDGKRVQEFFTTMESAIKDH 73
           S + FYDF+ RMR PA+ DL  SI+SF+ S S     N E DG RVQ FF  ME+AI+DH
Sbjct: 9   SRLDFYDFIGRMRRPAAADLFHSIRSFLASLSQGGEPNAEVDGGRVQTFFAEMETAIRDH 68

Query: 74  PLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHL 133
           PLWANAT + I++A+EGLEKY+MTKLF R FAS++EDVK D EISEKI LLQ F+RP HL
Sbjct: 69  PLWANATNQEIDNALEGLEKYIMTKLFDRAFASSAEDVKSDMEISEKIGLLQHFVRPHHL 128

Query: 134 DIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
           DIP  L NEA+WLLA KELQKIN+ K+PREK+ CIM+CC++INNLLLN S+S +  L GA
Sbjct: 129 DIPKLLHNEAAWLLAVKELQKINSFKSPREKLSCIMSCCQVINNLLLNVSMSNDRTLSGA 188

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKS 253
           DDFLP+LIYI IKANPPQLHSN+KFIQL+RR+  L+SE  YY TNL+SAK FI+++N  S
Sbjct: 189 DDFLPILIYITIKANPPQLHSNLKFIQLFRRETRLISEVEYYLTNLISAKMFIMNVNGHS 248

Query: 254 LSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRK 313
           LSMEE+ F+  M++ARL N ++ +  + +S G+ T                         
Sbjct: 249 LSMEESVFQTHMESARLGNHIS-VASTNSSQGLGT------------------------- 282

Query: 314 SLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLC 373
                    P Q     +T    G  +PFM++E   LT  +V++L  +Y+ VV +YT L 
Sbjct: 283 -------STPGQNEESGDT---EGLKFPFMDSETESLTPAEVKQLHELYRQVVTRYTLLS 332

Query: 374 RAVRHVSV 381
           +A+R +SV
Sbjct: 333 KALRKLSV 340

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114759|ref|XP_003559162.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Brachypodium distachyon]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/367 (52%), Positives = 253/367 (68%), Gaps = 37/367 (10%)

Query: 15  SAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHP 74
           S V FY FLDRMR PA+ DL RSIKSF+ S S +  + E DG RVQ FFT ME+ I++HP
Sbjct: 10  SRVDFYGFLDRMRRPAAADLFRSIKSFLASLSLDEPSAEEDGARVQAFFTAMETTIREHP 69

Query: 75  LWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLD 134
           LWANAT + I+ A+EGLEKY+MTKLF RTF S++ED   D E+SEKI LLQ FLRP HLD
Sbjct: 70  LWANATHQEIDHALEGLEKYIMTKLFDRTFVSSAEDAAADAEVSEKIGLLQQFLRPCHLD 129

Query: 135 IPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGAD 194
           IP  L NEASWLLA KELQKIN+ ++PR+K+LCIM+CC++INNLLLN S+S +    GAD
Sbjct: 130 IPKILHNEASWLLAVKELQKINSFRSPRDKLLCIMSCCQVINNLLLNVSMSNDRSPSGAD 189

Query: 195 DFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSL 254
           +FLP+LIYI IKANPPQLHSN+KF+QL+RR+A LVSE  YY TNL+SAK FI+++N  SL
Sbjct: 190 EFLPILIYITIKANPPQLHSNLKFVQLFRREAKLVSEVEYYLTNLISAKMFIVNVNGHSL 249

Query: 255 SMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKS 314
           SMEE+EF+K M++A+L  +++    S T  G+ T            TR            
Sbjct: 250 SMEESEFQKHMESAKLGTQISAASPS-TPQGLAT-----------STR------------ 285

Query: 315 LEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVEKLLSVYKDVVRKYTNLCR 374
                  GP ++     ++      +P+ME+E   LT  ++++L  +Y+ VV +YT L +
Sbjct: 286 -------GPQKQTDMEGSV------FPYMESETESLTAAELKQLHGLYRQVVTRYTLLSK 332

Query: 375 AVRHVSV 381
           A+R +SV
Sbjct: 333 ALRKLSV 339

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218194079|gb|EEC76506.1| hypothetical protein OsI_14274 [Oryza sativa Indica Group]

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 215/275 (78%), Gaps = 2/275 (0%)

Query: 15  SAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNN-ANPENDGKRVQEFFTTMESAIKDH 73
           S + FYDF+ RMR PA+ DL  SI+SF+ S S     N E DG RVQ FF  ME+AI+DH
Sbjct: 9   SRLDFYDFIGRMRRPAAADLFHSIRSFLASLSQGGEPNAEVDGGRVQTFFAEMETAIRDH 68

Query: 74  PLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHL 133
           PLWANAT + I++A+EGLEKY+MTKLF R FAS++EDVK D EISEKI LLQ F+RP HL
Sbjct: 69  PLWANATNQEIDNALEGLEKYIMTKLFDRAFASSAEDVKSDMEISEKIGLLQHFVRPHHL 128

Query: 134 DIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
           DIP  L NEA+WLLA KELQKIN+ K+PREK+ CIM+CC++INNLLLN S+S +  L GA
Sbjct: 129 DIPKLLHNEAAWLLAVKELQKINSFKSPREKLSCIMSCCQVINNLLLNVSMSNDRTLSGA 188

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKS 253
           DDFLP+LIYI IKANPPQLHSN+KFIQL+RR+  L+SE  YY TNL+SAK FI+++N  S
Sbjct: 189 DDFLPILIYITIKANPPQLHSNLKFIQLFRRETRLISEVEYYLTNLISAKMFIMNVNGHS 248

Query: 254 LSMEETEFEKSMQAARLANKVTLIEESTTSNGIKT 288
           LSMEE+ F+  M++ARL N ++ +  + +S G+ T
Sbjct: 249 LSMEESVFQTHMESARLGNHIS-VASTNSSQGLGT 282

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082206|ref|XP_002306602.1| predicted protein [Populus trichocarpa] gi|222856051|gb|EEE93598.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 189/394 (47%), Positives = 259/394 (65%), Gaps = 38/394 (9%)

Query: 16  AVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPL 75
           ++  +DFL+RMR+P++ D V+SIKSFIVSFS +  +PE D   VQEF   ME+A K HPL
Sbjct: 7   SLGLHDFLERMRHPSAADFVKSIKSFIVSFSNHAPDPERDSALVQEFLANMETAFKAHPL 66

Query: 76  WANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI 135
           WA  + E +ESA EGLEKYVMTKL SR FAS  +DV++D+++SEKI L+Q F+RPE+LDI
Sbjct: 67  WAGCSEEELESAGEGLEKYVMTKLSSRVFASVPDDVEVDKQLSEKISLIQQFIRPENLDI 126

Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADD 195
               QNE SWLLA+KELQK+N  +APR+K++CI+NCC++INNLL NAS++ N    GAD+
Sbjct: 127 KPAFQNETSWLLAQKELQKVNLYRAPRDKLVCILNCCKVINNLLFNASMASNENPPGADE 186

Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           FLPVLIY+ IKANPPQLHSN+ +IQ YR Q+ LV EAAY+ TN++SA++FI +++AKSLS
Sbjct: 187 FLPVLIYVTIKANPPQLHSNLLYIQRYRCQSRLVGEAAYFLTNILSAESFISNIDAKSLS 246

Query: 256 MEETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQ--GHPERHDVTRIEASAMSNDR- 312
           MEE+EFEK+M+ AR      L   ST  NG+ T  +Q  G+  R ++   +  A+S+ + 
Sbjct: 247 MEESEFEKNMELAR-----DLTGLSTDLNGLSTQSDQNAGNNSRAELMESKHRALSSKKE 301

Query: 313 ----------------KSLEEQRRVGPSQRIYGNNTITSGGYG--------------YPF 342
                           K L+  +   P ++I   + I + G                YP+
Sbjct: 302 RDLSIGSRSSEVTSMSKDLQYAKDESPMEKISSLSDIENKGATLLLKEDLTSQVLREYPY 361

Query: 343 MEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAV 376
           + A    LT  DVE LL+ YK +V KY  L + +
Sbjct: 362 LFASVGDLTINDVEDLLNNYKQLVFKYVCLSKGL 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459441|ref|XP_002285827.1| PREDICTED: vacuolar protein sorting-associated protein 9A isoform 1 [Vitis vinifera]

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 184/397 (46%), Positives = 265/397 (66%), Gaps = 23/397 (5%)

Query: 9   ASAAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMES 68
           AS+ AP  +T++DFL+RMR P++ D V++IKSFIVSFS N  +PE D   VQEF   ME 
Sbjct: 8   ASSTAP--LTWHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQEFLANMEM 65

Query: 69  AIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFL 128
           A + HPLWA  + E +ESA EGLEKYVMTKL++R FAS  +D K+D+++ EKI L+Q F+
Sbjct: 66  AFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGLVQQFI 125

Query: 129 RPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENV 188
           RPE LDI T  QNE SWLLA+KELQKIN  KAPR+K++CI+NCC++INNLLLNASI+ N 
Sbjct: 126 RPEQLDIKTTFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNE 185

Query: 189 ELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILD 248
           +  GAD+FLPVLIY+ +KANPPQLHSN+ +I  YRRQ+ +V+EAAY+FTN++SA++FI +
Sbjct: 186 DPPGADEFLPVLIYVTLKANPPQLHSNLLYILRYRRQSRMVAEAAYFFTNMLSAESFISN 245

Query: 249 LNAKSLSMEETEFEKSMQAAR-----LANKVTLIEESTTSNGIKTLGEQGHPERHDVTRI 303
           +NA+SLSM+E EFE +M++AR     L++ +  + +      + +  E+      D++ +
Sbjct: 246 INAESLSMDEREFEMNMESARALLSGLSSDLDGVLKEPQQKSLYSTKEKDPSIGSDLSLL 305

Query: 304 EASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYG--------------YPFMEAEASR 349
            + A S  +  LE   +     ++   + + + G                YP++ A    
Sbjct: 306 SSEATSGAK--LEPHAKDQLITKVPSISDLENKGAAMLLKEDQASLAFREYPYLYANVGD 363

Query: 350 LTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVA 386
           LT  DVE LL+ YK +V K+  L + +   + P+ ++
Sbjct: 364 LTVNDVEDLLNHYKQLVFKHVCLSKGLGVPAPPLPLS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2092211	520	VPS9A [Arabidopsis thaliana (t	0.768	0.613	0.474	1.7e-80
TAIR|locus:2184727	712	VPS9B "AT5G09320" [Arabidopsis	0.930	0.542	0.407	1.3e-66
DICTYBASE|DDB_G0285073	726	DDB_G0285073 "vacuolar sorting	0.575	0.329	0.342	2.4e-34
DICTYBASE|DDB_G0289495	1197	DDB_G0289495 "vacuolar sorting	0.722	0.250	0.301	3.1e-26
POMBASE|SPBC4F6.10	572	vps901 "guanyl-nucleotide exch	0.621	0.451	0.304	7.6e-26
ASPGD|ASPL0000018244	767	AN3678 [Emericella nidulans (t	0.412	0.222	0.353	1e-25
UNIPROTKB|E1C0P2	491	RABGEF1 "Uncharacterized prote	0.573	0.484	0.292	9.4e-24
ZFIN|ZDB-GENE-040426-813	470	rabgef1l "RAB guanine nucleoti	0.580	0.512	0.308	3.8e-23
UNIPROTKB|F6Y7P9	492	RABGEF1 "Uncharacterized prote	0.573	0.483	0.288	4.8e-23
UNIPROTKB|F1RJI2	492	LOC100516668 "Uncharacterized	0.573	0.483	0.288	4.8e-23

TAIR|locus:2092211 VPS9A [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 156/329 (47%), Positives = 225/329 (68%)

Query:    20 YDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANA 79
             +DFL+RMR P++ D V+SIKSFIVSFS N  +PE D   VQEFF+ ME+A + HPLW+  
Sbjct:    11 HDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGC 70

Query:    80 TIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI-PTF 138
             + E ++SA +GLEKYVMTKLF+R FAS +E+V  D+++ +K+ L+Q F+ PE+LDI PTF
Sbjct:    71 SEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTF 130

Query:   139 LQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLP 198
              QNE+SWLLA+KELQKIN  KAPR+K+                ASI+ N    GAD+FLP
Sbjct:   131 -QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLP 189

Query:   199 VLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEE 258
             VLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S++E
Sbjct:   190 VLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDE 249

Query:   259 TEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQ 318
              EFEK+M++AR   +++ ++  T   G  +      P R + T  +  +++  R++   Q
Sbjct:   250 AEFEKNMESARA--RISGLDSQTYQTGHGS----APPPRDESTLQKTQSLNPKRENTLFQ 303

Query:   319 RRVGPSQRIYGNNTITSGGYGYPFMEAEA 347
              +   S  + G N + +     P  +AE+
Sbjct:   304 SK--SSDSLSGTNELLNINSETPMKKAES 330

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0000919 "cell plate assembly" evidence=IMP

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0042546 "cell wall biogenesis" evidence=IMP

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2184727 VPS9B "AT5G09320" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 166/407 (40%), Positives = 237/407 (58%)

Query:    20 YDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANA 79
             ++FL +   P++ D ++SIKSFIVS      +PE D   VQ+FF  MESA + HPLW+  
Sbjct:    11 HNFLSK---PSAKDFIKSIKSFIVSILNTAPDPEKDCDAVQDFFYKMESAFRAHPLWSGC 67

Query:    80 TIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI-PTF 138
             + + +++A +GLEKYVMTKLF R FAS +EDV  D+++ +KI L+Q F+ PE+LDI PTF
Sbjct:    68 SDDELDNAGDGLEKYVMTKLFPRVFASNTEDVISDEKLFQKISLVQQFISPENLDIQPTF 127

Query:   139 LQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLP 198
              QN+ SWLLA+KELQKIN   APR+K+                ASI+ N    GAD FLP
Sbjct:   128 -QNQTSWLLAQKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIASNQNEPGADQFLP 186

Query:   199 VLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEE 258
             VLIY+ IKANPPQ HSN+ +IQ YRRQ+ LV EA Y FTN++SA++FI +++AKSLSM+E
Sbjct:   187 VLIYVTIKANPPQFHSNLLYIQRYRRQSKLVGEAGYLFTNILSAESFISNIDAKSLSMDE 246

Query:   259 TEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEAS--AMSNDRKSLE 316
              +FE  M++A         +   T +G   L    + +R ++     S  + S   ++L 
Sbjct:   247 ADFETKMKSAHARLSGPGSQSYQTDHGA-ALPTAHNTKRENMLLHTKSTDSFSGTNETLS 305

Query:   317 EQ--RRVGPSQRIY--GNNTI-------TSGGYGYPFMEAEASRLTTGDVEKLLSVYKDV 365
             E   ++  P   +   G  T+       T     YP+M A    L  GDVE LL+ YK +
Sbjct:   306 ETPIKKADPITDLENKGAATLLNDRSEATKIFQEYPYMFASVGDLKIGDVEDLLNNYKQL 365

Query:   366 VRKYTNLCRAVRHV-SVPMTVAPIPHFE-GNNSSFKQPATKTSASTD 410
             V KY  L + +    S+   ++P+   +   N +      +T + TD
Sbjct:   366 VFKYVCLSKGLGDATSLTPCISPLQASKVSENHTTLSSDFQTKSETD 412

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

DICTYBASE|DDB_G0285073 DDB_G0285073 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 350 (128.3 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 89/260 (34%), Positives = 139/260 (53%)

Query:    21 DFLDRMRNPASLDLVRSIKSFIVSFSFNNANP-ENDGKRVQEFFTTMESAIKDHPLWANA 79
             +F  ++++  ++D+ RS+ +F+  FS N  +  E  G  +  +   +E  +   PLWANA
Sbjct:   147 NFYTKLKHKNAIDIRRSLLNFVTQFSTNGPSLIEEQGHTIITYTRELEHWVLSLPLWANA 206

Query:    80 TIEAIESAMEGLEKYVMTKLFSRTFAST-------------SEDVKIDQEISEKI---CL 123
                 +E   +G+EKY+M KL+  TF                SE   I  E   K+     
Sbjct:   207 GEAEVEGIRDGIEKYIMGKLYHCTFPPARLGGLELTEGNIVSEGSLIPTEEDLKLFKHIT 266

Query:   124 LQTFLRPEHLDIPTFLQ-NEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXA 182
             +  FL P+HLDI  F+  NE    LA  EL+KIN  K PR+K+                 
Sbjct:   267 IHGFLEPQHLDIQQFINSNEQRQNLAISELRKINTYKTPRDKMVCVYNCCKVIFKLLK-- 324

Query:   183 SISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSA 242
             S++ N    GAD+FLP+LIY+++K+NP  L SNI ++  +R Q+ +++E A YFT+LVSA
Sbjct:   325 SVNPNGNPSGADEFLPILIYVVLKSNPIMLKSNITYVNTFRDQSRMMTEIACYFTHLVSA 384

Query:   243 KTFILDLNAK-SLSMEETEF 261
              +FI ++     L++EE+EF
Sbjct:   385 VSFIENITTPVDLTIEESEF 404

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0289495 DDB_G0289495 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 309 (113.8 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 98/325 (30%), Positives = 157/325 (48%)

Query:    18 TFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKR--VQEFFTTMESAIKDHPL 75
             ++  FL ++ N  +L +  SI SFI +    N    ND  R  + +F   M++ +   P 
Sbjct:   593 SYEHFLSKLEN--TLPIKSSIDSFIRTLK--NRKVANDDLREALLDFVDNMQNTLTLDPQ 648

Query:    76 WANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI 135
             W+ ++ E +  +   L++YV+ K++   F  + E+ K DQ++S  I  L +F+  EH++I
Sbjct:   649 WSQSSEEELNYSSHHLQQYVLEKIYDYVFQPSEEEAKKDQDLSMLIDKL-SFITLEHMEI 707

Query:   136 PTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADD 195
             P +  +EA W  A K L KIN  ++ R KV                   +   EL GAD 
Sbjct:   708 PIYGFSEAMWYKAGKYLLKINFTQSCRHKVMYIMKCCKTILKHFS----THLKELSGADF 763

Query:   196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
              LP LI++++K NPP LHSN+ FI  +   +   SEA YY T L+SA  FI +L  + L 
Sbjct:   764 LLPNLIWVLLKTNPPFLHSNVIFISKFSDSSD--SEAIYYLTQLISAIYFIENLKPELLK 821

Query:   256 MEETEFEKSMQAA-----RLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRIEASAMSN 310
             +++ E+ K M  +     R  +  +L   +  +NG               T I  +  +N
Sbjct:   822 IDKKEYYKLMGTSSPIISRSPSLQSLNNNNNNNNGNNNNNGNNTTTTTTTTTITTTNNNN 881

Query:   311 DRKSLEEQRRVGPSQRIYGNNTITS 335
             +  S+E      PS  I  NN +TS
Sbjct:   882 NNNSIE----ASPS--IKANN-LTS 899

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC4F6.10 vps901 "guanyl-nucleotide exchange factor Vps901 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 299 (110.3 bits), Expect = 7.6e-26, P = 7.6e-26
 Identities = 87/286 (30%), Positives = 148/286 (51%)

Query:    19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWAN 78
             F+ FL+++R+ ++  + + +KSF+  F+          K +++F   +   I+ +  WA+
Sbjct:   115 FHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWAS 174

Query:    79 ATIEAIESAMEGLEKYVM----TKLFSRTFAST--------SEDVKIDQEISEKICLLQT 126
              +   I++A EG+EK V+    T LFS   A +        S+DV+ D+ +SEK+ L Q 
Sbjct:   175 GSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ- 233

Query:   127 FLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISE 186
             ++  E+LDI     +   + LA  EL++IN   APR+K+                    E
Sbjct:   234 WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVVKEE 293

Query:   187 NVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 246
             +     AD F+P+LI+++++A P  L SNI++IQ +R    L  E  YY + L+ A +FI
Sbjct:   294 S-----ADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFI 348

Query:   247 LDLNAKSLSMEETEF----EKS---MQAARLANKV---TLIEESTT 282
               L+  SL++ E EF    EKS   M+  +L+ K    T + E+ T
Sbjct:   349 ETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEKSESKTAVNENAT 394

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006623 "protein targeting to vacuole" evidence=ISO

ASPGD|ASPL0000018244 AN3678 [Emericella nidulans (taxid:162425)]

 Score = 252 (93.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 64/181 (35%), Positives = 105/181 (58%)

Query:   109 EDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWL-LAEKELQKINALKAPREKVXX 167
             EDV+ D+ +++K+  + +++R EHLDI     +   +L LA++EL KIN  +APR+KV  
Sbjct:   407 EDVERDEVLAQKM-RIYSWVREEHLDIAPVSSSGRRFLNLAQQELLKINGYRAPRDKVIC 465

Query:   168 XXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAM 227
                           A  S+      AD F+P+LIY++++ANP  L SNI++I  +R Q  
Sbjct:   466 ILNCCKVIFGLLRNAKKSDT----SADSFIPLLIYVVLQANPEHLVSNIQYILRFRNQEK 521

Query:   228 LVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLA----NKVTLIEESTTS 283
             L  EA YY ++L  A  FI  L+  SL++ + EFE++++AA  A    N+ + + +  TS
Sbjct:   522 LGGEAGYYLSSLSGAIQFIETLDRTSLTVSDEEFERNVEAAVSAIAEQNRASEVADPRTS 581

Query:   284 N 284
             +
Sbjct:   582 S 582

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C0P2 RABGEF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 74/253 (29%), Positives = 135/253 (53%)

Query:    19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
             F +FL     P   D+ +  K F+ + +   + + E   +  Q+F+  +   ++    W 
Sbjct:   142 FIEFLKTYHKPGQ-DIYKQCKLFLDTMNHKRDLSIEEQSECAQDFYQNVAEKLQTR--W- 197

Query:    78 NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
                 E +E AM+ +EKY+MT+ +   F   T++D K D  + ++I  L  ++ P+ L +P
Sbjct:   198 KVPPEKVEKAMDQIEKYIMTRQYKYVFCPETTDDEKKDLAVQKRIRALH-WVTPQMLCVP 256

Query:   137 TFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
                +  E S ++ +   ++ ++++ + PR+K+                  I++N E   A
Sbjct:   257 VNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASA 312

Query:   194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
             DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct:   313 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 372

Query:   253 SLSMEETEFEKSM 265
             SL++ + +F++ M
Sbjct:   373 SLNLSQEDFDRFM 385

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-040426-813 rabgef1l "RAB guanine nucleotide exchange factor (GEF) 1, like" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 79/256 (30%), Positives = 131/256 (51%)

Query:    19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNA-NPENDGKRVQEFFTTMESAIKDHPLWA 77
             F DFL   + P   D+ +   +F  + +       E+    VQ+F+ +M   ++ +    
Sbjct:   135 FIDFLKPFQRPG-YDIFKQCHAFAENIAHKKVVGCEDLSDSVQDFYQSMSEYLQTN---F 190

Query:    78 NATIEAIESAMEGLEKYVMTKLFSRTFAST-SEDVKIDQEISEKICLLQTFLRPEHLDIP 136
               + E +E+ ME +E+YVM +L+ + F    ++D K D  + ++I  L  ++    L +P
Sbjct:   191 KGSPEVVETVMEEVERYVMGRLYEQLFCPDHTDDEKKDLTVQKRIRALH-WVSIAMLCVP 249

Query:   137 TFLQNEA---SWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
                Q      S   A+ +L  +++ K P+EK+                +  +       A
Sbjct:   250 LDEQIPKVSDSVERAKTDLINLDSKKVPKEKLACVTRCSKHILTAIQGSKKAA----ASA 305

Query:   194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
             DDFLP L+YII+KANPP+LHSNI++I  Y   + L+S E  YYFTNL  A +FI  L+A+
Sbjct:   306 DDFLPALVYIILKANPPRLHSNIQYITRYCNPSRLMSGEDGYYFTNLCCAVSFIEKLDAQ 365

Query:   253 SLSMEETEFEKSMQAA 268
             SL++   +FE+ M  A
Sbjct:   366 SLNLSPEDFERYMSGA 381

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F6Y7P9 RABGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 73/253 (28%), Positives = 134/253 (52%)

Query:    19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
             F DFL         ++ +  K F+ +  +  + + E   +  Q+F+  +   ++      
Sbjct:   143 FIDFLKTFHKTGQ-EIYKQTKMFLEAMHYKRDLSIEEQSECTQDFYQNVAERMQTR---G 198

Query:    78 NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
                 E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P
Sbjct:   199 KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVP 257

Query:   137 TFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
                + +E S ++ +   ++ ++++ + PR+K+                  I++N E   A
Sbjct:   258 VNEEISEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASA 313

Query:   194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
             DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct:   314 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 373

Query:   253 SLSMEETEFEKSM 265
             SL++ + +F++ M
Sbjct:   374 SLNLSQEDFDRYM 386

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RJI2 LOC100516668 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 279 (103.3 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 73/253 (28%), Positives = 134/253 (52%)

Query:    19 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
             F +FL         ++ +  K F+ S  +  + + E   +  Q+F+ T+   ++      
Sbjct:   143 FIEFLKTFHKTGQ-EIYKQTKMFLESMHYKRDLSIEEQSECTQDFYQTVAERMQTR---G 198

Query:    78 NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
                 E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P
Sbjct:   199 KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVP 257

Query:   137 TFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
                +  E S ++ +   ++ ++++ + PR+K+                  +++N E   A
Sbjct:   258 VNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KVTKN-EPASA 313

Query:   194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
             DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct:   314 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 373

Query:   253 SLSMEETEFEKSM 265
             SL++ + +F++ M
Sbjct:   374 SLNLSQEDFDRYM 386

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031972001 SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (355 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	2e-36
smart00167	117	smart00167, VPS9, Domain present in VPS9	8e-25

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score =  128 bits (324), Expect = 2e-36
 Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 3/106 (2%)

Query: 145 WLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYII 204
           W  A++EL+K+N  K+PREK+ C++  C++I   L  ++     E  GADD LP+LIY++
Sbjct: 1   WEKAQEELKKLNEAKSPREKLKCLLRTCKLITEALSKSN---PGEPLGADDLLPILIYVL 57

Query: 205 IKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLN 250
           IKANPP L+SN++FI L+R   +L  E  YY T L +A  FI +L+
Sbjct: 58  IKANPPNLYSNLQFISLFRDPDLLSGEEGYYLTTLEAALEFIENLD 103

Length = 104

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score = 97.9 bits (244), Expect = 8e-25
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 145 WLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYII 204
             + + EL+ +   K+P +K+ C++  C++I  LL   S     E+ GADDFLPVLIY+I
Sbjct: 2   VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSG----EVAGADDFLPVLIYVI 57

Query: 205 IKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDL---NAKSLSMEETE 260
           IK +P  L  N ++++ +   ++L  E  YY T+L +A   I  L   +A  LS E+  
Sbjct: 58  IKCDPRDLLLNAEYMEEFLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQEL 116

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	100.0
KOG2320	651	consensus RAS effector RIN1 (contains VPS domain)	99.97
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.92
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.63
cd01776	87	Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin	99.38
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.3

>smart00167 VPS9 Domain present in VPS9

Probab=100.00  E-value=1.8e-33  Score=242.24  Aligned_cols=114  Identities=32%  Similarity=0.579  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhh
Q 014956          144 SWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYR  223 (415)
Q Consensus       144 ~~~~Ai~eL~ki~~~~sP~dKL~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~  223 (415)
                      +|+.|+.+|++|+.++||+|||.||++||+.|++.+...    .+.++|||||||+||||||||+||+|+||++||++|+
T Consensus         1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~~----~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~   76 (117)
T smart00167        1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQ----SGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFL   76 (117)
T ss_pred             CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcc----cCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHC
Confidence            589999999999999999999999999999999988532    2457999999999999999999999999999999999


Q ss_pred             chhccCCchhHHHHhHHHHHHHHHhcCcCCCCcc-hHHH
Q 014956          224 RQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSME-ETEF  261 (415)
Q Consensus       224 ~~~~l~gE~gYylT~l~sAv~fI~~l~~~~Lsi~-~~ef  261 (415)
                      +++.+.||.|||||||++|++||++++.++|.+. +++|
T Consensus        77 ~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~~~~~~~  115 (117)
T smart00167       77 EPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQE  115 (117)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHCCHHhCCccCHHHh
Confidence            9999999999999999999999999999999865 4554

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-30  Score=264.15  Aligned_cols=336  Identities=16%  Similarity=0.203  Sum_probs=237.7

Q ss_pred             hHHHHHHHHH----------hcCCCchHHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHHHHHHHhcCcccccCCHH
Q 014956           16 AVTFYDFLDR----------MRNPASLDLVRSIKSFIVSFSFN---NANPENDGKRVQEFFTTMESAIKDHPLWANATIE   82 (415)
Q Consensus        16 ~~~f~~FL~~----------lk~p~a~~l~k~ik~Fi~~f~~~---~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~   82 (415)
                      ...|..|+..          |..+...-..-.++.||.-....   .-+..++-+-|+.|++.+.+.|..++--....+.
T Consensus       252 Ss~f~s~~~~e~q~~ke~a~L~qd~~tyfG~lvqD~vs~~~d~~~~~td~a~mL~~iRq~lt~~k~yL~qs~e~~~~v~~  331 (651)
T KOG2320|consen  252 SSSFKSFLGPERQHYKESAELEQDKMTYFGSLVQDYVSDYEDVWHRPTDSASMLQSIRQALTRRKNYLSQSPELDTPVQP  331 (651)
T ss_pred             hhhhHhhhhhHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhHHHHhhcCCCCCCccc
Confidence            4467777653          33444444555566666655553   2233455566777888888888776532211100


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhcCCCc--------cchHHHHHHH---HHHHHHhcCCCCCccccCCCCccchhHHHHHHH
Q 014956           83 AIESAMEGLEKYVMTKLFSRTFASTS--------EDVKIDQEIS---EKICLLQTFLRPEHLDIPTFLQNEASWLLAEKE  151 (415)
Q Consensus        83 ~ld~~~e~iEk~Im~~Ly~~lf~~~~--------~d~~~D~~L~---~kI~~Lq~~Itp~~L~I~~~~~~e~~~~~Ai~e  151 (415)
                      . ..-...+|..+-.-||+.+..+..        .....|-.++   +..... .--++..||+--.......++.....
T Consensus       332 ~-~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l~~~h~~dGsl~~l~en~~vv-r~~~~~~lG~~~~~Ps~~~mEqvk~k  409 (651)
T KOG2320|consen  332 S-LLSETPLEAVLESALHKSVLKPLKPNLSAQLPPVHSKDGSLQQLKENQDVV-RAANPTALGVFLSTPSDVLMEQVKQK  409 (651)
T ss_pred             c-ccCcchHHHHHHHHHHHhhccccchhHhhhcchhhhhccHHHHHhccccee-cccCccccceeccCCcHHHHHHHHHH
Confidence            0 000123444444556666665521        1112232221   111111 12356677874444444567778888


Q ss_pred             HHhcccCCChHHHHHHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhccCCc
Q 014956          152 LQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSE  231 (415)
Q Consensus       152 L~ki~~~~sP~dKL~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l~gE  231 (415)
                      +.+|.+.++|..||..++++||.|+..+.+   ...+.+.|||||||+|.||+.|++.+.+..+++|||+|++|+.+.||
T Consensus       410 ~~~m~r~YSP~kkl~~Llk~ckLly~~~~~---~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~~ge  486 (651)
T KOG2320|consen  410 FTAMQRRYSPSKKLHALLKACKLLYAGMGG---DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLLSGE  486 (651)
T ss_pred             HHHHHHhhChHHHHHHHHHHHHHHHHHhcc---CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhhcCc
Confidence            999999999999999999999999998853   23456899999999999999999999999999999999999999999


Q ss_pred             hhHHHHhHHHHHHHHHhcCcC-----CCCcchHHHHHHHHHhhhhcc------------cccccccCCCCCcccccCCCC
Q 014956          232 AAYYFTNLVSAKTFILDLNAK-----SLSMEETEFEKSMQAARLANK------------VTLIEESTTSNGIKTLGEQGH  294 (415)
Q Consensus       232 ~gYylT~l~sAv~fI~~l~~~-----~Lsi~~~ef~~~~~~~~~~~~------------~~~~~~~~~~~~~ktl~~~~~  294 (415)
                      +|||||++.+|+++|+++...     .++.+..+..+.|+++|+.++            ....+|..++|+.||++++|.
T Consensus       487 ggYYLTs~~~al~~iks~~~~~ra~r~l~~e~r~Slhqw~~rRl~~~~l~~~~c~q~~l~aa~qe~~~g~~~aT~~~~p~  566 (651)
T KOG2320|consen  487 GGYYLTSLYGALEHIKSLGRITRAPRGLSVERRDSLHQWERRRLPNRTLPAVRCVQPPLRAAYQEPVSGCTKATLASRPS  566 (651)
T ss_pred             cchhHHHHHHHHHHHhccccccccccccchhhhHHHHHHHhccCccccccchhhccchhheeccccccccccccccCCCc
Confidence            999999999999999999764     467788999999999998853            223778889999999999999


Q ss_pred             CChhhhHHHHHhhccCCchhhHHHhhcCCCccccccccccCCCCCcccccccccCCCc-----hhHHHHHHHHHHHHHH
Q 014956          295 PERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTT-----GDVEKLLSVYKDVVRK  368 (415)
Q Consensus       295 ~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~-----~~v~~ll~~Yk~l~~~  368 (415)
                      .++..+|++||+||+++            +|+-+|+|-..+++..=+-..+++.++.-     -+.+.|+|+||++..+
T Consensus       567 ~~t~~lc~lCa~kf~v~------------~p~~~~Lfl~~e~~~s~L~~~~lPh~i~t~~~~~~~~~~~~fayk~~d~~  633 (651)
T KOG2320|consen  567 AQTQILCRLCAEKFGVT------------SPQEHGLFLFVEGWDSQLADDALPHDIKTILSLTIHKSKFHFAYKRDDTI  633 (651)
T ss_pred             cchhhhhHhhHHhhcCC------------CccccCeEEEecCccccCCccccceecchhhccccccccccccccccccc
Confidence            99999999999999999            89999988555554443444444444441     3668899999998653

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.92  E-value=2.1e-25  Score=186.99  Aligned_cols=103  Identities=41%  Similarity=0.716  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhc
Q 014956          145 WLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRR  224 (415)
Q Consensus       145 ~~~Ai~eL~ki~~~~sP~dKL~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~  224 (415)
                      |++|+++|++|+..+||.+|+.||.+|++.|.+.+..   ...+..+||||+||+|+|||+||+++++++++.||++|+.
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~---~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~   77 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKT---SKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFID   77 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHH---HCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc---ccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcc
Confidence            7899999999999999999999999999999998822   2345689999999999999999999999999999999999


Q ss_pred             hhccCCchhHHHHhHHHHHHHHHhcC
Q 014956          225 QAMLVSEAAYYFTNLVSAKTFILDLN  250 (415)
Q Consensus       225 ~~~l~gE~gYylT~l~sAv~fI~~l~  250 (415)
                      ++.+.||.|||||||++|++||++++
T Consensus        78 ~~~~~~e~~y~ltt~~aA~~~i~~~~  103 (104)
T PF02204_consen   78 SSLLSGEEGYYLTTFEAAVEYIQNLE  103 (104)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHcc
Confidence            88899999999999999999999876

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=7.9e-17  Score=169.31  Aligned_cols=324  Identities=27%  Similarity=0.344  Sum_probs=240.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHhhHHhcCCCccchHHHHHHHHHHHHHhcCCCCCccc
Q 014956           55 DGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLD  134 (415)
Q Consensus        55 ~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e~iEk~Im~~Ly~~lf~~~~~d~~~D~~L~~kI~~Lq~~Itp~~L~  134 (415)
                      ....+++++..+......++.|+..++++.+....+.++++|+...+.+|....++...|.....+....+..+++...+
T Consensus         3 ~~~~~~~~~~~~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   82 (477)
T KOG2319|consen    3 DPDLVQSTVAKYSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFASDVEEVDADVLNEIDDSSLQTIISPEASG   82 (477)
T ss_pred             ccccccccccchhhhhccccccccchhhhhhhccccccchhcccccccCcchhhhhhhhHhhhccccchhhhhcCHhhcc
Confidence            34578888889999999999999999999999999999999999999999854455566666666666676778888888


Q ss_pred             cCCCCccchhHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhh
Q 014956          135 IPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHS  214 (415)
Q Consensus       135 I~~~~~~e~~~~~Ai~eL~ki~~~~sP~dKL~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~S  214 (415)
                      ..+.......|..|+.++..++..++|.+|+.|++.||+.++.........    +.-+|+++|.++|+..+++++++++
T Consensus        83 ~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  158 (477)
T KOG2319|consen   83 DQETFNQNTSIENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSIA----PNQASQFLPVLIFVTKKANPQQFHS  158 (477)
T ss_pred             CccchhhccchhhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhcc----cccccccccceeeeccccCchhhhh
Confidence            888877777899999999999999999999999999999999988654433    2339999999999999999999999


Q ss_pred             HHHHHHHhhchhccCCchhHHHHhHHHHHHHHHhcCcCCCCcchHHHHHHHHHhhhhcccccccccCCCCCccccc----
Q 014956          215 NIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSMQAARLANKVTLIEESTTSNGIKTLG----  290 (415)
Q Consensus       215 ni~YI~~F~~~~~l~gE~gYylT~l~sAv~fI~~l~~~~Lsi~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~ktl~----  290 (415)
                      ++.|..+++....+.++.+||++++..+..++-+....++.+++.+++..+....-..+-..++-+.-. ...+.+    
T Consensus       159 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i~-~~~~~~~~~~  237 (477)
T KOG2319|consen  159 NVLYEMRNRREGPLEGENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDIP-VLEQIPELSK  237 (477)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhcccc-ccccccchhH
Confidence            999999999999989999999999999999999999999999999999887764422111101100000 000000    


Q ss_pred             -----------CCCCCCh---hhhHHHHHhhccCCchhhHHHhhcCCCccccccccccCCCCCcccccccccCCCchhHH
Q 014956          291 -----------EQGHPER---HDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTGDVE  356 (415)
Q Consensus       291 -----------~~~~~~~---~~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~v~  356 (415)
                                 .+...+.   ..+|.+-..+.......+.+.+++++..-+-.+..-+-.+..+.|......+++...++
T Consensus       238 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e  317 (477)
T KOG2319|consen  238 RVALASQRLALIRELLTPRDKKEACALNCEKPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPE  317 (477)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHH
Confidence                       0111111   22333222222222223333333322211111111122457778888888888889999


Q ss_pred             HHHHHHHHHHHHHhHHHHHhcccCCCC
Q 014956          357 KLLSVYKDVVRKYTNLCRAVRHVSVPM  383 (415)
Q Consensus       357 ~ll~~Yk~l~~~~~~l~~~~~~~~~~~  383 (415)
                      .+.+.|+...++|.++...+.......
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (477)
T KOG2319|consen  318 RLSGEEKYYLFTYACASSDIFDATLLS  344 (477)
T ss_pred             hhhccchhhhhhhhhhhhhhhhhhhhh
Confidence            999999999999999999988765543

>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector

Probab=99.38  E-value=5.1e-14  Score=112.01  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=58.1

Q ss_pred             ccccCCCCCcccccCCCCCChhhhHHHHHhhccCCchhhHHHhhcCCCccccccccccCCCCCcccccccccCCCch---
Q 014956          277 IEESTTSNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPFMEAEASRLTTG---  353 (415)
Q Consensus       277 ~~~~~~~~~~ktl~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~---  353 (415)
                      .+|++++|++|||+|+|++|+++||++||+||+++            +|+.||+|         .|+++.+++|+.+   
T Consensus         6 ~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~------------qPe~y~LF---------l~vdg~~~qLadd~~P   64 (87)
T cd01776           6 FQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVT------------QPEEYSLF---------LFVEETWQQLAPDTYP   64 (87)
T ss_pred             eecCCCCceeeeeecCCCCcHHHHHHHHHHHhccC------------ChhheeEE---------EEECCcEEEcCccccc
Confidence            57789999999999999999999999999999999            99999999         5666666666654   


Q ss_pred             -----------hHHHHHHHHHHH
Q 014956          354 -----------DVEKLLSVYKDV  365 (415)
Q Consensus       354 -----------~v~~ll~~Yk~l  365 (415)
                                 ++.++||+||++
T Consensus        65 q~ika~L~~~~~~~~fhfvYrr~   87 (87)
T cd01776          65 QRIKAELHSRPQPNTFHFVYRRI   87 (87)
T ss_pred             ceechhhccCCCCcceEEEEecC
Confidence                       556888888863

Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.9e-11  Score=128.86  Aligned_cols=240  Identities=28%  Similarity=0.340  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCC----CChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHH
Q 014956           16 AVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNA----NPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGL   91 (415)
Q Consensus        16 ~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~~~~----~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e~i   91 (415)
                      ...|+.+|..+..-.........++++..+..-..    ..-......+.|+......++.-.   ..........+...
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~l~~~~~~~~~~  182 (477)
T KOG2319|consen  106 YKAPHDKLQCILSQCKLIFELLLKSSIAPNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRR---EGPLEGENKLYFTC  182 (477)
T ss_pred             ccCchhHHHHHHHHHhhhhHHHHHhhcccccccccccceeeeccccCchhhhhhHHHHHHHHH---hhhHHHHHHHHHHH
Confidence            45666666665554445555555555555551100    001223344557777665554311   11223345567778


Q ss_pred             HHHHHHHhhHHhcCC-CccchHHHHHHHHHHHHHhcCCCCCccccCCCCccc---hhHHHHHHHHHhcccCCChHH-HHH
Q 014956           92 EKYVMTKLFSRTFAS-TSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNE---ASWLLAEKELQKINALKAPRE-KVL  166 (415)
Q Consensus        92 Ek~Im~~Ly~~lf~~-~~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~e---~~~~~Ai~eL~ki~~~~sP~d-KL~  166 (415)
                      +...+..+|..++.. ...+.+.|..++.+++.+ +|+++..++|+......   .....+.+.+..|+....|++ |..
T Consensus       183 ~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  261 (477)
T KOG2319|consen  183 EDSAEAFISNILLDSETSDDAEFDLALSKAIRRL-QGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLTPRDKKEA  261 (477)
T ss_pred             hhHHHHHHhccccCcccCCHHHHhHHHHHHHHhh-cccchhhccccccccccchhHHHHHHHHHHHHHHHhhcchhhhHH
Confidence            888889999998887 446788999999999999 69999999998765432   245678889999999999999 799


Q ss_pred             HHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhccCCchhHHHHhHHHHHHHH
Q 014956          167 CIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI  246 (415)
Q Consensus       167 ~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l~gE~gYylT~l~sAv~fI  246 (415)
                      |.++|++.|+..+...    .....+||.|+|.++|.+++.+++++.++++|+.+|+.+..+.|+.+|++.++.++..++
T Consensus       262 ~~~~~~~~~f~~l~~~----~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  337 (477)
T KOG2319|consen  262 CALNCEKPIFSALKIT----DDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASSDI  337 (477)
T ss_pred             HHHHHHHHHHhhhhcc----chhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhhhh
Confidence            9999999999988543    335789999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcCCCCcch-HHHHH
Q 014956          247 LDLNAKSLSMEE-TEFEK  263 (415)
Q Consensus       247 ~~l~~~~Lsi~~-~ef~~  263 (415)
                      ......++.+.. +.|.+
T Consensus       338 ~~~~~~~~~i~~~q~~~~  355 (477)
T KOG2319|consen  338 FDATLLSLTISSLQDFAR  355 (477)
T ss_pred             hhhhhhhcccchhhhhhh
Confidence            998888888764 55554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
2efc_A	267	Ara7-GdpATVPS9A Length = 267		9e-80
2efh_A	267	Ara7-GdpATVPS9A(D185N) Length = 267		4e-79
2ot3_A	274	Crystal Structure Of Rabex-5 Vps9 Domain In Complex		7e-22
1txu_A	273	Crystal Structure Of The Vps9 Domain Of Rabex-5 Len		2e-19

>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A Length = 267

Iteration: 1
 Score =  293 bits (751), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 143/254 (56%), Positives = 194/254 (76%), Gaps = 2/254 (0%)
Query: 17  VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
           +  +DFL+RMR P++ D V+SIKSFIVSFS N  +PE D   VQEFF+ ME+A + HPLW
Sbjct: 10  LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 69
Query: 77  ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
           +  + E ++SA +GLEKYVMTKLF+R FAS +E+V  D+++ +K+ L+Q F+ PE+LDI 
Sbjct: 70  SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 129
Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADD 195
           PTF QNE+SWLLA+KELQKIN  KAPR+K+                ASI+ N    GAD+
Sbjct: 130 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADE 188
Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 189 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 248
Query: 256 MEETEFEKSMQAAR 269
           ++E EFEK+M++AR
Sbjct: 249 LDEAEFEKNMESAR 262

>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N) Length = 267

Iteration: 1
 Score =  291 bits (746), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/254 (55%), Positives = 194/254 (76%), Gaps = 2/254 (0%)
Query: 17  VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
           +  +DFL+RMR P++ D V+SIKSFIVSFS N  +PE D   VQEFF+ ME+A + HPLW
Sbjct: 10  LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 69
Query: 77  ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDI- 135
           +  + E ++SA +GLEKYVMTKLF+R FAS +E+V  D+++ +K+ L+Q F+ PE+LDI 
Sbjct: 70  SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 129
Query: 136 PTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADD 195
           PTF QNE+SWLLA+KELQKIN  KAPR+K+                ASI+ N    GA++
Sbjct: 130 PTF-QNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGANE 188
Query: 196 FLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLS 255
           FLPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S
Sbjct: 189 FLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSIS 248
Query: 256 MEETEFEKSMQAAR 269
           ++E EFEK+M++AR
Sbjct: 249 LDEAEFEKNMESAR 262

>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With Nucleotide Free Rab21 Length = 274

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 82  EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLL-----QTFLRPEHLDI 135
           E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L     Q    P + DI
Sbjct: 79  ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 138
Query: 136 PTFLQNEASWLL--AEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGA 193
           P     E S ++  A  ++ ++++ + PR+K+                  I++N E   A
Sbjct: 139 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNA---IKITKN-EPASA 189
Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
           DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct: 190 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 249
Query: 253 SLSMEETEFEKSM 265
           SL++ + +F++ M
Sbjct: 250 SLNLSQEDFDRYM 262

>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5 Length = 273

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 82  EAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ 140
           E +E   + +EKY+ T+L+   F   T++D K D  I ++I  L+ ++ P+ L +P    
Sbjct: 81  ERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQXLCVPV--- 136
Query: 141 NEASWLLAEKELQKINAL------KAPREKVXXXXXXXXXXXXXXXXASISENVELGGAD 194
           NE    +++  ++ I  +      + PR+K+                  I++N E   AD
Sbjct: 137 NEDIPEVSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIFNA---IKITKN-EPASAD 192
Query: 195 DFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKS 253
           DFLP LIYI++K NPP+L SNI++I  +   + L + E  YYFTNL  A  FI  L+A+S
Sbjct: 193 DFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDAQS 252
Query: 254 LSMEETEFEK 263
           L++ + +F++
Sbjct: 253 LNLSQEDFDR 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
2efe_A	267	Similarity to vacuolar protein sorting-associated	1e-82
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	4e-62
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  253 bits (647), Expect = 1e-82
 Identities = 152/253 (60%), Positives = 207/253 (81%)

Query: 17  VTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLW 76
           +  +DFL+RMR P++ D V+SIKSFIVSFS N  +PE D   VQEFF+ ME+A + HPLW
Sbjct: 10  LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLW 69

Query: 77  ANATIEAIESAMEGLEKYVMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
           +  + E ++SA +GLEKYVMTKLF+R FAS +E+V  D+++ +K+ L+Q F+ PE+LDI 
Sbjct: 70  SGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQ 129

Query: 137 TFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGADDF 196
              QNE+SWLLA+KELQKIN  KAPR+K++CI+NCC++INNLLLNASI+ N    GAD+F
Sbjct: 130 PTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEF 189

Query: 197 LPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSM 256
           LPVLIY+ IKANPPQLHSN+ +IQ YRR++ LV EAAY+FTN++SA++FI +++AKS+S+
Sbjct: 190 LPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISL 249

Query: 257 EETEFEKSMQAAR 269
           +E EFEK+M++AR
Sbjct: 250 DEAEFEKNMESAR 262

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  200 bits (510), Expect = 4e-62
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNA-NPENDGKRVQEFFTTMESAIKDHPLWA 77
           F +FL         ++ +  K F+    +    + E   +  Q+F+  +   ++      
Sbjct: 19  FIEFLKTFHKTGQ-EIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQT---RG 74

Query: 78  NATIEAIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
               E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L+ ++ P+ L +P
Sbjct: 75  KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVP 133

Query: 137 TFLQN---EASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
                       + A  ++ ++++ + PR+K+ CI  C + I     NA      E   A
Sbjct: 134 VNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI----FNAIKITKNEPASA 189

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
           DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct: 190 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 249

Query: 253 SLSMEETEFEKSMQAARLANK 273
           SL++ + +F++ M       K
Sbjct: 250 SLNLSQEDFDRYMSGQTSPRK 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 55/414 (13%), Positives = 118/414 (28%), Gaps = 121/414 (29%)

Query: 1   MDTSSSSSASAAAPSAVTFYDFLDRMRN-------PASL---DLVRSIKSFIVSFSFNNA 50
           +D + +S +  ++   +  +     +R           L     V++      +F+    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNL--- 264

Query: 51  NPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSED 110
                    +   TT    + D    A  T  +++     L    +  L  +      +D
Sbjct: 265 -------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 111 VKIDQEISE----KICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPRE--- 163
           +   +E+      ++ ++   +R + L      ++     L       +N L+ P E   
Sbjct: 318 LP--REVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRK 373

Query: 164 ----------------KVLCIM------NCCRIINNLLLNASISENVELGGADDFLPVL- 200
                            +L ++      +   ++ N L   S+ E        +    + 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISIP 429

Query: 201 -IYIIIKA---NPPQLHSNIKFIQLYRRQAMLVSEAA-------YYFTNLVSAKTFILD- 248
            IY+ +K    N   LH     +  Y       S+         Y++       + I   
Sbjct: 430 SIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFY-------SHIGHH 480

Query: 249 LNAKSLSMEETEFEKSMQAAR-LANKVTLIEESTTSNG----IKTLGE---------QGH 294
           L         T F       R L  K  +  +ST  N     + TL +            
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 295 PE--------------------RHDVTRIEASAMSNDRKSL--EEQRRVGPSQR 326
           P+                        T +   A+  + +++  E  ++V   QR
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV---QR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 63/450 (14%), Positives = 135/450 (30%), Gaps = 120/450 (26%)

Query: 13  APSAVT--FYDFLDRMRNPASL---------DLVRSIKSFIVSFSFNNANPEND------ 55
            PS +T  + +  DR+ N   +              ++      +     P  +      
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----ALLELRPAKNVLIDGV 158

Query: 56  ---GKRVQEFFTTM-ESAIKDHPL---------WAN-ATIEAIESAMEGLEK--YVMTKL 99
              GK      T +       + +         W N     + E+ +E L+K  Y +   
Sbjct: 159 LGSGK------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 100 F-SRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFL---QNEASW---------L 146
           + SR+  S++  ++I    +E   LL++      L +   L   QN  +W         L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAFNLSCKIL 269

Query: 147 LAEKELQKINALKAPREKVLCIMNCCRIIN-----NLL---LNASISENVELGGADDFLP 198
           L  +  Q  + L A     + + +    +      +LL   L+    +           P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNP 327

Query: 199 VLIYII--IKANPPQLHSNIKFIQLYR-RQAMLVS-------EAAYYFTNLVSAKTFILD 248
             + II     +      N K +   +    +  S       E    F  L     F   
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPS 384

Query: 249 LN--AKSLSM---EETEFEKSMQAARLANKVTLIEESTTSNGIKTLGEQGHPERHDVTRI 303
            +     LS+   +  + +  +   +L    +L+E+        ++          +   
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQ-PKESTISI--------PSIYLE 434

Query: 304 EASAMSNDR---KSLEEQRRVGPSQRIYGNNTITSG---GY-----GYPFMEAEASRLTT 352
               + N+    +S+ +   +    + + ++ +       Y     G+     E      
Sbjct: 435 LKVKLENEYALHRSIVDHYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----P 487

Query: 353 GDVEKLLSVYKDVVRKYTNLCRAVRHVSVP 382
             +     V+ D    +  L + +RH S  
Sbjct: 488 ERMTLFRMVFLD----FRFLEQKIRHDSTA 513

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 58/407 (14%), Positives = 116/407 (28%), Gaps = 143/407 (35%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKR------------VQEFFTTM 66
             D  D  ++  S + +  I          + +  +   R            VQ+F   +
Sbjct: 35  CKDVQDMPKSILSKEEIDHI--------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 67  ESAIKDHP-LWANATIEAIESAMEGLEKYVMT--KLFSRTFASTSEDVKIDQEISE-KIC 122
                ++  L +    E  + +M     Y+    +L++        +V   Q   + +  
Sbjct: 87  LR--INYKFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 123 LLQTFLRPEHLDIPTFLQNEA----SWLLAEKELQKINALKAPREKVLCIMN-------- 170
           LL+  LRP   ++   +        +W+  +          +   KV C M+        
Sbjct: 144 LLE--LRP-AKNV--LIDGVLGSGKTWVALD-------VCLS--YKVQCKMDFKIFWLNL 189

Query: 171 -CCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLV 229
             C     +L                 L  L+Y I     P   S        + +   +
Sbjct: 190 KNCNSPETVLEM---------------LQKLLYQI----DPNWTSRSDHSSNIKLR---I 227

Query: 230 SEAAYYFTNLVSAKTF-----ILD--LNAKSLSMEETEFEKSMQAARLANKVTLIEESTT 282
                    L+ +K +     +L    NAK+ +     F  S +         L+   TT
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCK--------ILL---TT 272

Query: 283 SNGIKTLGEQGHPERHDVTRIEASAMSNDRKSLEEQRRVGPSQRIYGNNTITSGGYGYPF 342
                            VT                             + +++    +  
Sbjct: 273 RF-------------KQVT-----------------------------DFLSAATTTHIS 290

Query: 343 MEAEASRLTTGDVEKLLSVYKDVVRKYTNLCRAVRHVSVPMTVAPIP 389
           ++  +  LT  +V+ LL  Y D   +  +L R V   + P  ++ I 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTN-PRRLSIIA 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=3.2e-60  Score=461.42  Aligned_cols=256  Identities=59%  Similarity=0.985  Sum_probs=232.9

Q ss_pred             ChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHH
Q 014956           15 SAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKY   94 (415)
Q Consensus        15 s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~~~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e~iEk~   94 (415)
                      ...+|++||++||+|+|.+++++|++||.+|....+++++++++||+||+.+.++|+.|++|++.++++++.+.++||+|
T Consensus         8 ~~~~f~~Fl~~l~~~~a~~~~~~i~~Fi~~f~~~~~~~~e~~~~v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~iEk~   87 (267)
T 2efe_A            8 VFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKY   87 (267)
T ss_dssp             -----------CCSGGGHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHSCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHH
Confidence            35999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHhcCCCccchHHHHHHHHHHHHHhcCCCCCccccCCCCccchhHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 014956           95 VMTKLFSRTFASTSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVLCIMNCCRI  174 (415)
Q Consensus        95 Im~~Ly~~lf~~~~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~e~~~~~Ai~eL~ki~~~~sP~dKL~~ll~~~k~  174 (415)
                      ||++||+++|++..++.++|..|++||+.|++||+|+||||+..+.++.+|..|+++|++|+.++||+|||.||++||+.
T Consensus        88 v~~~ly~~lf~~~~~d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~l~~~~k~  167 (267)
T 2efe_A           88 VMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKV  167 (267)
T ss_dssp             HHHHHHHHHSSCSHHHHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence            99999999999988889999999999999966999999999999888888999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhccCCchhHHHHhHHHHHHHHHhcCcCCC
Q 014956          175 INNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSL  254 (415)
Q Consensus       175 I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l~gE~gYylT~l~sAv~fI~~l~~~~L  254 (415)
                      |++++.+.+...++.++|||||||+|||||||||||+|+||++||++|++++.+.||.|||||||++|++||++++.++|
T Consensus       168 I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~~L  247 (267)
T 2efe_A          168 INNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSI  247 (267)
T ss_dssp             HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred             HHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHhhC
Confidence            99988653333345689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhhh
Q 014956          255 SMEETEFEKSMQAARL  270 (415)
Q Consensus       255 si~~~ef~~~~~~~~~  270 (415)
                      +|+++||++.|++++.
T Consensus       248 ~i~~~ef~~~~~~~~~  263 (267)
T 2efe_A          248 SLDEAEFEKNMESARA  263 (267)
T ss_dssp             TCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999874

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=1.1e-53  Score=416.81  Aligned_cols=251  Identities=29%  Similarity=0.550  Sum_probs=226.2

Q ss_pred             CCCCChHHHHHHHHHhcCCCchHHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHH
Q 014956           11 AAAPSAVTFYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAME   89 (415)
Q Consensus        11 ~~~~s~~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~~-~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e   89 (415)
                      .+.++..+|++||++|++| +.+|+++|++||.+|... .++++++++.|++||..+.++|..+  |+. ++++++.+++
T Consensus        11 ~~~~~~~df~~FL~~~~~~-~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~   86 (274)
T 2ot3_A           11 ETDRVSKEFIEFLKTFHKT-GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GKV-PPERVEKIMD   86 (274)
T ss_dssp             -----CHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TCC-CHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hcc-CHHHHHHHHH
Confidence            3456789999999999999 899999999999999974 5889999999999999999999987  876 5778999999


Q ss_pred             HHHHHHHHHhhHHhcCCC-ccchHHHHHHHHHHHHHhcCCCCCccccCCCCcc---chhHHHHHHHHHhcccCCChHHHH
Q 014956           90 GLEKYVMTKLFSRTFAST-SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKV  165 (415)
Q Consensus        90 ~iEk~Im~~Ly~~lf~~~-~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~---e~~~~~Ai~eL~ki~~~~sP~dKL  165 (415)
                      +||+|||++||+.+|++. ..+..+|..|++||+.| +||+|+||||+.....   ...|..|+++|++|+.++||+|||
T Consensus        87 ~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L-~~i~~~~L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL  165 (274)
T 2ot3_A           87 QIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKL  165 (274)
T ss_dssp             HHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH-cCCCHHHcCCCcccCCchHHHHHHHHHHHHHHccccCCHHHHH
Confidence            999999999999999985 45678999999999999 6999999999987543   246899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhcc-CCchhHHHHhHHHHHH
Q 014956          166 LCIMNCCRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAML-VSEAAYYFTNLVSAKT  244 (415)
Q Consensus       166 ~~ll~~~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l-~gE~gYylT~l~sAv~  244 (415)
                      .||++||+.|++++...    .+.++|||||||+|||||||||||+|+||++||++|++++.+ .||.|||||||++|++
T Consensus       166 ~~l~~~~k~I~~~l~~~----~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~  241 (274)
T 2ot3_A          166 ACITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVA  241 (274)
T ss_dssp             HHHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHH
Confidence            99999999999988642    235799999999999999999999999999999999999865 7999999999999999


Q ss_pred             HHHhcCcCCCCcchHHHHHHHHHhhh
Q 014956          245 FILDLNAKSLSMEETEFEKSMQAARL  270 (415)
Q Consensus       245 fI~~l~~~~Lsi~~~ef~~~~~~~~~  270 (415)
                      ||++++.++|+|+++||++.|.++..
T Consensus       242 fI~~l~~~~L~i~~~ef~~~~~~~~~  267 (274)
T 2ot3_A          242 FIEKLDAQSLNLSQEDFDRYMSGQTS  267 (274)
T ss_dssp             HHHHCCTGGGTCCHHHHHHHHTTSCC
T ss_pred             HHHhCCHHhcCCCHHHHHHHHhhccC
Confidence            99999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	4e-67

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  211 bits (539), Expect = 4e-67
 Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 15/253 (5%)

Query: 19  FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWA 77
           F +FL         ++ +  K F+    +  + + E   +  Q+F+  +   ++      
Sbjct: 4   FIEFLKTFHKTGQ-EIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQT---RG 59

Query: 78  NATIEAIESAMEGLEKYVMTKLFSRTFAS-TSEDVKIDQEISEKICLLQTFLRPEHLDIP 136
               E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L+ ++ P+ L +P
Sbjct: 60  KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVP 118

Query: 137 TFLQN---EASWLLAEKELQKINALKAPREKVLCIMNCCRIINNLLLNASISENVELGGA 193
                       + A  ++ ++++ + PR+K+ CI  C + I N +         E   A
Sbjct: 119 VNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNEPASA 174

Query: 194 DDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAK 252
           DDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+
Sbjct: 175 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 234

Query: 253 SLSMEETEFEKSM 265
           SL++ + +F++ M
Sbjct: 235 SLNLSQEDFDRYM 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=1.6e-52  Score=400.59  Aligned_cols=241  Identities=31%  Similarity=0.586  Sum_probs=220.6

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHH
Q 014956           17 VTFYDFLDRMRNPASLDLVRSIKSFIVSFSF-NNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYV   95 (415)
Q Consensus        17 ~~f~~FL~~lk~p~a~~l~k~ik~Fi~~f~~-~~~~~ee~~~~Vq~F~~~i~~~l~~~~~~~~~~~~~ld~~~e~iEk~I   95 (415)
                      .+|++||+.++ +.+.++.+.+++|+.+|.. ..++.++.++.|++||+.+.+++..   |.+.++++++.++++||+||
T Consensus         2 ~df~~fl~~~~-~~~~~~~k~~~~Fi~~~~~~~~~~~~e~~~~i~~f~~~~~~~l~~---~~~~~~~~~~~~~~~vEk~i   77 (249)
T d2ot3a1           2 KEFIEFLKTFH-KTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQT---RGKVPPERVEKIMDQIEKYI   77 (249)
T ss_dssp             HHHHHHHHTTH-HHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHS---TTCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHH
Confidence            58999999885 5689999999999999977 4678999999999999999999974   67788899999999999999


Q ss_pred             HHHhhHHhcCC-CccchHHHHHHHHHHHHHhcCCCCCccccCCCCcc---chhHHHHHHHHHhcccCCChHHHHHHHHHH
Q 014956           96 MTKLFSRTFAS-TSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKVLCIMNC  171 (415)
Q Consensus        96 m~~Ly~~lf~~-~~~d~~~D~~L~~kI~~Lq~~Itp~~L~I~~~~~~---e~~~~~Ai~eL~ki~~~~sP~dKL~~ll~~  171 (415)
                      |++||+++|.+ ...+..+|..|++||+.| +|++|+|||++.....   ..+|..|+.+|.+|+.++||+|||.||++|
T Consensus        78 ~~~ly~~~f~~~~~~~~~~D~~l~~~i~~l-~~i~~~~l~i~~~~~~~~~~~~~~~A~~~L~~i~~~~sP~dKl~~i~~~  156 (249)
T d2ot3a1          78 MTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKC  156 (249)
T ss_dssp             HHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCChhhHHHHHHHHHHHHHh-ccCCHHhcCCccccccchhhhHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence            99999999998 466789999999999999 6999999999876543   357999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccCcCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHhhchhcc-CCchhHHHHhHHHHHHHHHhcC
Q 014956          172 CRIINNLLLNASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAML-VSEAAYYFTNLVSAKTFILDLN  250 (415)
Q Consensus       172 ~k~I~~~l~~~s~s~~~~~~~ADdfLPlLIYVvikan~~~L~Sni~YI~~F~~~~~l-~gE~gYylT~l~sAv~fI~~l~  250 (415)
                      |+.|++++...    .+.++|||||||+|||||||||||+|+||++||++|++++.+ .||.|||||||+|||+||++++
T Consensus       157 ~~~I~~~~~~~----~~~~~~ADd~LP~liyviika~~~~l~S~i~yI~~F~~~~~l~~gE~~Y~lt~l~aAv~fI~~ld  232 (249)
T d2ot3a1         157 SKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD  232 (249)
T ss_dssp             HHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhh----cCCCCChhHHHHHHHHHHHHcChhhHHHHHHHHHHHhChhhccCcHHHHHHHHHHHHHHHHHhCC
Confidence            99999988542    235799999999999999999999999999999999998875 6999999999999999999999


Q ss_pred             cCCCCcchHHHHHHHH
Q 014956          251 AKSLSMEETEFEKSMQ  266 (415)
Q Consensus       251 ~~~Lsi~~~ef~~~~~  266 (415)
                      .++|+|+++||+++|.
T Consensus       233 ~~~L~i~~~~f~~~~~  248 (249)
T d2ot3a1         233 AQSLNLSQEDFDRYMS  248 (249)
T ss_dssp             TGGGTCCHHHHHHHHT
T ss_pred             HhhCCCCHHHHHhhcC
Confidence            9999999999999985