Citrus Sinensis ID: 014969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHHT
Secondary Structure (PSIPRED)
cccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MYLFSEEMKksgvnnnnnnnntsaeehsdtfpspgapkgwsservphptsssrrhisaasltpfysgralpskwedaerwicspvsgyglgltnknslhsqfqrrpksksgpivpppprmhnsiyspstgmqvldggrvknfvagspfstgVLVADRisgnfygqgfllhngsyaarsrtsnvpgsgwsdlasddsspssqdeklddipdaEAVVSRVVSrrdmatqmspesstnssprgkssfspaVRSVAElqndhpaklevrevqidkgsttiswskrhrsrriksgfpdvdkfyqnvtgtcapsldLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISakqgqqlpktaHKAAffhkhgpmssfrscftchht
Flexible Loop (DISEMBL)
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHptsssrrhisaasltpfySGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSqfqrrpksksgpivpppprMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSpssqdeklddipdaEAVVSRVVsrrdmatqmspesstnssprgkSSFSPAVRSVAelqndhpaklevrevqidkgsttiswskrhrsrriksgfpdvdkfyQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMklekersystdkiLNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHHT
Low Complexity Region (SEG)
MYLFSEEMKKSGVnnnnnnnnTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWsdlasddsspssqdEKLDDIPDAEAvvsrvvsrrDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHHT
Disordered region (IsUnstruct)
*************************************************************TPFYSGRALPSKWEDAERWICSPVSGYGLGLT**************************************QVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYA******************************************************************************************************************GFPDVDKFYQNVTGTCAPSLDLSEVAASI*******AKITAWENL*************************************************************FF***********CF*****
Disordered Region (DISOPRED)
*YL***********************************************************************ED*************************************************************************************************************************************************************************************************************************************APSLDLSEVAAS**KLQREEAKITAWEN*******************************************************************GPMSSFRSCFTCHH*
Disordered Region (DISEMBL)
*********KSGVNNNNNNNN***********************************SAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNS**************PIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGW******************DIPDAEAVVSRVVSRR************************AVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISA***********KAAFFHKHGPMSSFRSCFTCHHT
Disordered Region (DISPRO)
*Y******KKS******************************************************SGRALPSKWEDAERWICSPV*****************************************PSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQ***********************************************************************************************KLEVREVQIDKGSTTISWSKRHRS*******PDVDKF*******CAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKH******RSC******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLFSEEMKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQxxxxxxxxxxxxxxxxxxxxxSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCHHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.216	0.454	0.377	3e-07
Q9M2D8	212	Uncharacterized protein A	no	no	0.236	0.462	0.316	3e-05

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query: 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371
           SE + + +K Q++ + I AWEN ++A  EA ++K+E +LEK+++  T+K+ NK+ L   +
Sbjct: 99  SEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKE 158

Query: 372 AQEMRISISAKQGQQLPKTAHKAAFFHKHG 401
           A+E R  I AK+G+ L K    AA +   G
Sbjct: 159 AEEKRAMIEAKRGEDLLKAEELAAKYRATG 188

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371
           SE + + +K +++ A + AWEN ++A  EA ++K+E +LEK+++   +++ NK+     +
Sbjct: 113 SEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKE 172

Query: 372 AQEMRISISAKQGQQLPKTAHKAAFFHKHG--PMSSFRSCF 410
           A+E R  I AK+G+ + K    AA +   G  P ++   CF
Sbjct: 173 AEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATC-GCF 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
255565198	386	DNA binding protein, putative [Ricinus c	0.884	0.950	0.612	1e-106
224081653	391	predicted protein [Populus trichocarpa]	0.891	0.946	0.570	1e-106
225438720	402	PREDICTED: uncharacterized protein LOC10	0.920	0.950	0.525	1e-100
359492027	570	PREDICTED: uncharacterized protein LOC10	0.893	0.650	0.512	5e-94
224136784	409	predicted protein [Populus trichocarpa]	0.901	0.914	0.503	2e-91
255538278	601	DNA binding protein, putative [Ricinus c	0.915	0.632	0.497	4e-87
441481995	565	remorin-1 protein [Dimocarpus longan]	0.925	0.679	0.484	7e-87
296082419	441	unnamed protein product [Vitis vinifera]	0.821	0.773	0.534	6e-84
224067258	578	predicted protein [Populus trichocarpa]	0.865	0.621	0.472	2e-80
449450229	589	PREDICTED: uncharacterized protein LOC10	0.901	0.634	0.468	4e-78

>gi|255565198|ref|XP_002523591.1| DNA binding protein, putative [Ricinus communis] gi|223537153|gb|EEF38786.1| DNA binding protein, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 280/387 (72%), Gaps = 20/387 (5%)

Query: 30  TFPSPGA----PKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWICSPV 85
           TFPSPGA     KGW SERVPHP+ SSRRHISA  LTPFYSGR +PSKWEDAERWICSPV
Sbjct: 13  TFPSPGAGNFQEKGWCSERVPHPSGSSRRHISA--LTPFYSGRTMPSKWEDAERWICSPV 70

Query: 86  SGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVAG 145
            GYG+    K S     QRRPKSKSGPIV P    +++  SPS  MQV+D   V+NF+A 
Sbjct: 71  LGYGV---TKYSQCLHHQRRPKSKSGPIVSPGIAYYSNC-SPS--MQVVDSSSVRNFIAN 124

Query: 146 SPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKL 205
           SPFSTGVL+   +  ++ G G  +   +  ARS    V G GWSDL S+ SSPSSQDEK+
Sbjct: 125 SPFSTGVLMPKGLVPHYNGGG--IGGQTIVARS----VSGPGWSDLPSESSSPSSQDEKV 178

Query: 206 DDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVR 265
           D I DAE  V+RV+SRRDMATQMSPE ST SSPR +SS  P++  V   Q+DHPAKLE+R
Sbjct: 179 DGINDAENTVTRVISRRDMATQMSPEGSTCSSPRERSSSPPSIPPVE--QSDHPAKLEIR 236

Query: 266 EVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREE 325
           EVQ+DK +T +S + RH SRR K G PDV    QN + +     ++SE ++  SKLQREE
Sbjct: 237 EVQVDKRATLVSRTTRHGSRRSKKGLPDVQDINQNASDSRISLWNVSEASSEFSKLQREE 296

Query: 326 AKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQ 385
           AKITAWENLQ+AKAEAAIRKLEMKLEK+RS S DKILNKL+ AQ+KAQEMR SI   Q  
Sbjct: 297 AKITAWENLQKAKAEAAIRKLEMKLEKKRSLSMDKILNKLRTAQIKAQEMRSSIPTTQDP 356

Query: 386 QLPKTAHKAAFFHKHGPMSSFRSCFTC 412
           Q PK +HKA+FFH+H  ++S  SCFTC
Sbjct: 357 QTPKISHKASFFHRHTRLTSVSSCFTC 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081653|ref|XP_002306470.1| predicted protein [Populus trichocarpa] gi|222855919|gb|EEE93466.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/389 (57%), Positives = 267/389 (68%), Gaps = 19/389 (4%)

Query: 31  FPSPGAP-----KGWSSERVPHPTSSS-RRHISAASLTPFYSGRALPSKWEDAERWICSP 84
           FPSPG       KGWSSER+PHP+S S RRHISA  LTPFYSGRALPSKWEDAERWICSP
Sbjct: 14  FPSPGGARYQENKGWSSERIPHPSSGSGRRHISA--LTPFYSGRALPSKWEDAERWICSP 71

Query: 85  VSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKNFVA 144
           V GYG+      S      RR KSKSGPI  PP   +    SPS G  V+DGG  +NF+ 
Sbjct: 72  VLGYGVA----KSSQCHPLRRAKSKSGPINLPPGIGYYHNCSPSMG--VIDGGIGRNFMV 125

Query: 145 GSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEK 204
            SPFSTGVL+ + + G             +  R  ++       SDLAS+ SS SSQDE+
Sbjct: 126 NSPFSTGVLMPNGV-GAHCSGSGGGGGQGHVERLASA----LSRSDLASEPSSSSSQDER 180

Query: 205 LDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEV 264
            + + D    V R++SRRDMATQMSPE ST+SS RG+SS  P+   V E Q+DHPAKLE+
Sbjct: 181 PEGVDDGNNTVDRIISRRDMATQMSPEGSTHSSCRGRSSSPPSTDPVLEPQSDHPAKLEI 240

Query: 265 REVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQRE 324
           REVQ+DK +T I WSKR  SRRIK G PDV++F  N     + S D+SE  +  SKLQRE
Sbjct: 241 REVQVDKRATVIRWSKRPGSRRIKRGQPDVEEFNPNAADAHSSSWDISEEVSDFSKLQRE 300

Query: 325 EAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQG 384
           EAKITAWENLQ+A+AEAAIRKLEMKLEK+RS S DKI+NKL++AQMKA+EMR S+S +Q 
Sbjct: 301 EAKITAWENLQKARAEAAIRKLEMKLEKKRSSSMDKIMNKLRIAQMKAEEMRSSMSIRQD 360

Query: 385 QQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           QQ+ + +HK   FHK   ++S  SCFTCH
Sbjct: 361 QQVSQKSHKIKLFHKRARLTSLGSCFTCH 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438720|ref|XP_002282548.1| PREDICTED: uncharacterized protein LOC100252502 [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/424 (52%), Positives = 280/424 (66%), Gaps = 42/424 (9%)

Query: 8   MKKSGVNNNNNNNNTSAEEHSDTFPSPG----------APKGWSSERVPHPTSSSRRHIS 57
           MKKS V ++N            +FPSPG           PKGWSSERVP   +S RR+I 
Sbjct: 1   MKKSAVTSHNLG----------SFPSPGTSNYGDGSGGVPKGWSSERVPPSVNSGRRYIG 50

Query: 58  AASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPP 117
            ++L PF SGRALPSKWEDAERWI SPVSGY +   NK+SL +Q QRRPKSKSGP+  P 
Sbjct: 51  GSTLMPFNSGRALPSKWEDAERWISSPVSGYSV---NKSSL-AQPQRRPKSKSGPLGLPG 106

Query: 118 PRMHNSIYSPSTGMQVLDGGRVKNFVA-GSPFSTGVLVADRISGNFYGQGFLLHNGSYA- 175
              +N  YSP+  M V DGG V+NF+   SPFSTGV+VA+ +S + YG G    NG    
Sbjct: 107 -VAYNPNYSPA--MPVFDGGGVRNFMGPSSPFSTGVMVAEGLSLH-YGAG----NGGQPH 158

Query: 176 ------ARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMS 229
                 +  R+ ++PG  WSD  S+ SSP+SQDEKL    DAE +VS VVSRRD+ATQMS
Sbjct: 159 PVPNEHSMERSISIPG--WSDFLSESSSPNSQDEKLGGSKDAETMVSPVVSRRDIATQMS 216

Query: 230 PESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKS 289
           P+S+T+SSP+ + SF P+       Q  H  K EVR+VQ+DKG T I WSK+H ++    
Sbjct: 217 PDSNTHSSPKDRFSFPPSPLLPTLEQQTHSVKSEVRDVQVDKGVTMIRWSKKHGAKTTMR 276

Query: 290 GFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMK 349
             PDV++  +N     A S D++E + +I KL+REEAKITAWENLQ+AKAEAAI+KLEMK
Sbjct: 277 APPDVEETDKNAAEAQASSWDIAEPSKNILKLKREEAKITAWENLQKAKAEAAIQKLEMK 336

Query: 350 LEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSC 409
           LEK+R+ S DKIL+KL++A+MKA+EMR SIS  Q  Q  KT+HK A F K+    S   C
Sbjct: 337 LEKKRAASMDKILSKLRMAEMKAEEMRSSISESQANQDSKTSHKVASFRKNVQKGSLGGC 396

Query: 410 FTCH 413
           FTCH
Sbjct: 397 FTCH 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492027|ref|XP_002282806.2| PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera] gi|302142306|emb|CBI19509.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 205/400 (51%), Positives = 260/400 (65%), Gaps = 29/400 (7%)

Query: 30  TFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAER 79
           TFPSPG P          KGWSSERVP  T+ +RRH+SAA L PF +GR LPSKWEDAER
Sbjct: 182 TFPSPGTPNYRHSNFGIQKGWSSERVPSHTNVNRRHVSAA-LLPFNNGRTLPSKWEDAER 240

Query: 80  WICSPVSGYGLGLTNKNSLHSQF---QRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDG 136
           WI SPV+G G+       +   F   QRRPKSKSGP+  PP   + S+YSP+  M   +G
Sbjct: 241 WIFSPVAGDGV-------VKPSFPPPQRRPKSKSGPL-GPPGIAYYSLYSPAIPM--FEG 290

Query: 137 GRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDS 196
           G   NF+AGSPFS GV+  D ++ +  G+G ++   +     R+++V   G S+L +  S
Sbjct: 291 GNAGNFMAGSPFSAGVIAPDGLAIHCGGRGGVMPVRTEPCMGRSASV--HGCSELLNQSS 348

Query: 197 SPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPA---VRSVAE 253
              S+DEK D + DA   +SR VSRRD+ATQMSPE S  SSP  K SFSP+   V  + E
Sbjct: 349 LRDSRDEKFDGVKDAATDISRTVSRRDIATQMSPEGSIFSSPERKPSFSPSSPTVLPIVE 408

Query: 254 LQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSE 313
           LQ+ + +KLE+R+VQ+D+  T   WSK+HR R    G  +VD + +      + + ++SE
Sbjct: 409 LQSVNSSKLEIRDVQVDERVTMTRWSKKHRGRIPGKGSENVDGWKKKAVEAHSSAWEVSE 468

Query: 314 VAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQ 373
            A SISK++REEAKITAWENLQ+AKAEAAIRKLEMKLEK+RS S DKI+NKL+ AQ KAQ
Sbjct: 469 TAKSISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQRKAQ 528

Query: 374 EMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           EMR S+ A    Q+   AHKA  F K   MSS   CFTCH
Sbjct: 529 EMRSSVLANHAHQVSGNAHKAVSFCKTRQMSSLSGCFTCH 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136784|ref|XP_002326944.1| predicted protein [Populus trichocarpa] gi|222835259|gb|EEE73694.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/409 (50%), Positives = 257/409 (62%), Gaps = 35/409 (8%)

Query: 28  SDTFPSPGAP-------------KGWSSERVPHPTSSSRRHI---SAASLTPFYS-GRAL 70
           S TFPSPG P             KGWSSERVP P +S+RR +   + A++ P+ + GR L
Sbjct: 12  SGTFPSPGTPNYLNQYHSSVGMQKGWSSERVPLPNNSNRRQVMNTTGAAVLPYNNNGRTL 71

Query: 71  PSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTG 130
           PSKWEDAERWI SPVSG G+    ++S+    QRRPKSKSGP+  PP   + S+YSP  G
Sbjct: 72  PSKWEDAERWIFSPVSGDGV---VRSSIQPA-QRRPKSKSGPL-GPPGVAYYSLYSP--G 124

Query: 131 MQVLDGGRVKNFVAGSPFSTGVLVADRI---SGNFYGQGFLLHNGSYAARSRTSNVPGSG 187
           MQV DGG   NFVAGSPFS GV+ AD +   S   +G  F +      ARS    V   G
Sbjct: 125 MQVFDGGNAGNFVAGSPFSAGVIAADGLGIRSHGSHGVSFPMRTEPCMARS----VSVHG 180

Query: 188 WSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS-- 245
            S++ +  S PS QDEKLD + DA   +SRVVSRRDMATQMSP  S +SSP  K SFS  
Sbjct: 181 CSEMVAQSSLPS-QDEKLDGVKDAATDISRVVSRRDMATQMSPVGSNHSSPTRKPSFSTS 239

Query: 246 -PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGT 304
            P+V  + ELQ+   ++ E R+VQ+D+  T   WSK+HR+R        VD + +    T
Sbjct: 240 TPSVLPIVELQSVPSSRSETRDVQVDERVTVTRWSKKHRARNHGKSSQVVDDWRKKAADT 299

Query: 305 CAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNK 364
            +   D+SE   SISK++REEAKITAWENLQ+AKAEA IRKLEMKLEK+RS S D+I+NK
Sbjct: 300 LSSGWDVSEAGKSISKVKREEAKITAWENLQKAKAEAEIRKLEMKLEKKRSSSMDRIMNK 359

Query: 365 LKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           L+ AQ +AQEMR S+ A Q  Q+   +HK   F +     S   CFTCH
Sbjct: 360 LRSAQKRAQEMRSSVLANQAHQVSTNSHKVISFRRTRQKGSLSGCFTCH 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538278|ref|XP_002510204.1| DNA binding protein, putative [Ricinus communis] gi|223550905|gb|EEF52391.1| DNA binding protein, putative [Ricinus communis]

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 204/410 (49%), Positives = 260/410 (63%), Gaps = 30/410 (7%)

Query: 22  TSAEEHSDTFPSPGAP----------KGWSSERVP-HPTSSSRRHISAASLTPFY-SGRA 69
           T++   S TFPSPG P          KGWSSERVP H  S++RR  + A+ +    +GR 
Sbjct: 202 TTSSRKSGTFPSPGTPNYRHASVGMQKGWSSERVPLHNLSNNRRQQANANASLLLPNGRT 261

Query: 70  LPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPST 129
           LPSKWEDAERWI SPVSG G G+  + S++   QRRPKSKSGP+ PP    + S+YSP+ 
Sbjct: 262 LPSKWEDAERWIFSPVSGDG-GM--RTSINQVPQRRPKSKSGPLGPPGIAYY-SLYSPA- 316

Query: 130 GMQVLDGGRVKNFV-AGSPFSTGVLVADRIS--GNFYGQGFLLHNGSYAARSRTSNVPGS 186
            M V DGG + NF+ A SPFS GV+ AD +    N  G  F +      ARS    V   
Sbjct: 317 -MPVFDGGNMGNFMSASSPFSAGVIAADGLGMRSNGNGVAFPVRTEPCMARS----VSVH 371

Query: 187 GWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS- 245
           G S++    SS +SQDEKLD + DA   +S V SRRDMATQMSPE S +SSP  ++SFS 
Sbjct: 372 GCSEVLPQSSS-ASQDEKLDGVKDAATDLSSV-SRRDMATQMSPEGSNHSSPSMRTSFSA 429

Query: 246 --PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTG 303
             P++  + E+Q+ H +K +VR+VQ+D+  T   WSK+HRSR        VD + +    
Sbjct: 430 STPSILPIVEVQSVHTSKSQVRDVQVDERVTVTRWSKKHRSRNQGKNSEIVDDWRKKSVD 489

Query: 304 TCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILN 363
             +   D+SE A  ISK +REEAKITAWENLQ+AKAEAAIRKLEMKLE++RS S DKI+N
Sbjct: 490 ARSSPWDVSEAAKCISKAKREEAKITAWENLQKAKAEAAIRKLEMKLERKRSSSMDKIMN 549

Query: 364 KLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           KL+ AQ +AQEMR S+   Q  Q+ +T+HKA  F +   M S   CFTCH
Sbjct: 550 KLRSAQKRAQEMRSSVLTNQANQVSRTSHKAISFRRTRQMGSLSGCFTCH 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441481995|gb|AGC39092.1| remorin-1 protein [Dimocarpus longan]

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 199/411 (48%), Positives = 252/411 (61%), Gaps = 27/411 (6%)

Query: 17  NNNNNTSAEEHSDTFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYS 66
           N   +++    S TFPSPG P          KGWSSERVP  T+ +RR + AA L P  +
Sbjct: 166 NMKKSSNLSRKSSTFPSPGTPNYRQANVGMQKGWSSERVPLQTAGNRRQVGAA-LLPLNN 224

Query: 67  GRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYS 126
           GR LPSKWEDAERWI SPV+G G G+      +   QRRPKSKSGP+ PP    + S+YS
Sbjct: 225 GRTLPSKWEDAERWILSPVAGDG-GVRQS---YVAPQRRPKSKSGPLGPPGVAYY-SLYS 279

Query: 127 PSTGMQVLDGGRVKNFVAGSPFSTGVLVADRISGNF--YGQGFLLHNGSYAARSRTSNVP 184
           P+  M   DGG V NF+ GSPF+ GVL  D +  N   +G  F L      ARS + +  
Sbjct: 280 PAVPM--FDGGNVGNFMVGSPFTAGVLAPDGLGINSGDHGGAFPLRMEPCMARSASVH-- 335

Query: 185 GSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSP--RGKS 242
             G S++ +  S PS  DEK+D   DA   +SR +SRRDMATQMSPE ST+SSP  R  S
Sbjct: 336 --GCSEVLNQPSLPS-HDEKIDGSRDAATDISRTISRRDMATQMSPEGSTHSSPERRPFS 392

Query: 243 SFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVT 302
             +P+   + ELQ    +K EVR+VQ+D   T   WSK+HRSR        VD + +   
Sbjct: 393 VSTPSALPIVELQGVQSSKSEVRDVQVDDRVTMTRWSKKHRSRISGKSSEIVDDWRKKAL 452

Query: 303 GTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKIL 362
            T   S D+++   +ISK++REE +ITAWENLQ+AKAEAAIRKLEMKLEK+RS S DKI+
Sbjct: 453 DTRTSSWDITDSTKTISKVKREELRITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIM 512

Query: 363 NKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           NKL+ AQ +AQEMR S+ A Q  Q+ +T +KA    +   M S   CFTCH
Sbjct: 513 NKLRSAQKRAQEMRSSVLANQDNQVARTQYKAVSIRRTRQMGSLSGCFTCH 563

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082419|emb|CBI21424.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 194/363 (53%), Positives = 245/363 (67%), Gaps = 22/363 (6%)

Query: 8   MKKSGVNNNNNNNNTSAEEHSDTFPSPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSG 67
           MKKS V ++N  +  S    +    S G PKGWSSERVP   +S RR+I  ++L PF SG
Sbjct: 57  MKKSAVTSHNLGSFPSPGTSNYGDGSGGVPKGWSSERVPPSVNSGRRYIGGSTLMPFNSG 116

Query: 68  RALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSP 127
           RALPSKWEDAERWI SPVSGY +   NK+SL +Q QRRPKSKSGP+  P    +N  YSP
Sbjct: 117 RALPSKWEDAERWISSPVSGYSV---NKSSL-AQPQRRPKSKSGPLGLPG-VAYNPNYSP 171

Query: 128 STGMQVLDGGRVKNFVA-GSPFSTGVLVADRISGNFYGQGFLLHNGSYA-------ARSR 179
           +  M V DGG V+NF+   SPFSTGV+VA+ +S + YG G    NG          +  R
Sbjct: 172 A--MPVFDGGGVRNFMGPSSPFSTGVMVAEGLSLH-YGAG----NGGQPHPVPNEHSMER 224

Query: 180 TSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPR 239
           + ++PG  WSD  S+ SSP+SQDEKL    DAE +VS VVSRRD+ATQMSP+S+T+SSP+
Sbjct: 225 SISIPG--WSDFLSESSSPNSQDEKLGGSKDAETMVSPVVSRRDIATQMSPDSNTHSSPK 282

Query: 240 GKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQ 299
            + SF P+       Q  H  K EVR+VQ+DKG T I WSK+H ++      PDV++  +
Sbjct: 283 DRFSFPPSPLLPTLEQQTHSVKSEVRDVQVDKGVTMIRWSKKHGAKTTMRAPPDVEETDK 342

Query: 300 NVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTD 359
           N     A S D++E + +I KL+REEAKITAWENLQ+AKAEAAI+KLEMKLEK+R+ S D
Sbjct: 343 NAAEAQASSWDIAEPSKNILKLKREEAKITAWENLQKAKAEAAIQKLEMKLEKKRAASMD 402

Query: 360 KIL 362
           KIL
Sbjct: 403 KIL 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067258|ref|XP_002302434.1| predicted protein [Populus trichocarpa] gi|222844160|gb|EEE81707.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/419 (47%), Positives = 251/419 (59%), Gaps = 60/419 (14%)

Query: 28  SDTFPSPGAP---------KGWSSERVPHPTSSSRRHI---SAASLTPFYS-------GR 68
           S TFPSPG P         KGWSSERVP P +S+RR +   +AA+++PF +       GR
Sbjct: 185 SGTFPSPGTPNYHSSAGMQKGWSSERVPLPNNSNRRQVMNATAAAVSPFNNNTNNNNNGR 244

Query: 69  ALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPS 128
            LPSKWEDAERWI SPVSG G     ++S+    QRRPKSKSGP+ PP    + S+YSP+
Sbjct: 245 PLPSKWEDAERWIFSPVSGDGFV---RSSIQPA-QRRPKSKSGPLGPPGVAYY-SLYSPA 299

Query: 129 TGMQVLDGGRVKNFVAGSPFSTGVLVADRI---SGNFYGQGFLLHNGSYAARSRTSNVPG 185
             +QV DG  + NF+AGSPFS  V+ AD +   S   +G  F +      ARS    V  
Sbjct: 300 --IQVFDGRNMGNFIAGSPFSASVIAADGLAVKSNGSHGVAFPMRTEPCMARS----VSV 353

Query: 186 SGWSDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFS 245
            G S++ +  S PS QDEKLD + DA   +SR VSRRDMATQMSPE S +SSP  + SFS
Sbjct: 354 HGCSEMLAQSSLPS-QDEKLDGVKDAATDISRAVSRRDMATQMSPEGSNHSSPTRQPSFS 412

Query: 246 ---PAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVT 302
              P+  ++ ELQ  + +K EVR+VQ+D+  T   WSK+HR+R        VD       
Sbjct: 413 VSTPSSLAIVELQGFNSSKSEVRDVQVDERVTVTRWSKKHRARNHGKSSEIVD------- 465

Query: 303 GTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLE--------MKLEKER 354
                  D  E AA  + ++REEAKITAWENLQ+AKAEA +RKLE        MKLEK+R
Sbjct: 466 -------DWREEAAD-ALVKREEAKITAWENLQKAKAEAELRKLEVLFFPTCFMKLEKKR 517

Query: 355 SYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           S S D+I+NKL+ AQ +AQEMR S+ A Q  Q+   + KA  F +     S   CFTCH
Sbjct: 518 SSSMDRIMNKLRSAQKRAQEMRSSVLANQAHQVSTNSRKAISFRRTCQKGSLSGCFTCH 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450229|ref|XP_004142866.1| PREDICTED: uncharacterized protein LOC101202771 [Cucumis sativus] gi|449518785|ref|XP_004166416.1| PREDICTED: uncharacterized LOC101202771 [Cucumis sativus]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 188/401 (46%), Positives = 245/401 (61%), Gaps = 27/401 (6%)

Query: 30  TFPSPGAP----------KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAER 79
           TFPSPG P          KGWSSERVP   +  R+H +  +L    SGR LPSKWEDAER
Sbjct: 197 TFPSPGTPNYRHNSFGMQKGWSSERVPLHNNGGRKHANNPALLTLNSGRTLPSKWEDAER 256

Query: 80  WICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRV 139
           WI SP+SG G+ + N   L    QRRPKSKSGP+ PP    + S+YSP+  +   +GG  
Sbjct: 257 WIFSPISGDGV-VRNSVPLP---QRRPKSKSGPLGPPGSAYY-SLYSPA--VPAYEGGSF 309

Query: 140 KNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPS 199
            NF+ GSPFS GV+ A+ +  +  G     H  +  + +R+ +V   G S++    SS +
Sbjct: 310 GNFITGSPFSAGVISANSLGIHSGGHEVAFHGQTEPSMARSLSV--HGCSEMLGQLSSTT 367

Query: 200 SQDEKLDDI----PDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAEL- 254
              E+  DI     D+   VSRVVSRRDMATQMSPESS +SSP+ + S S +  S   + 
Sbjct: 368 GLQEESGDILTRVKDSGTDVSRVVSRRDMATQMSPESSVHSSPKTRPSISASSSSAMHMF 427

Query: 255 -QNDHPAKLEVREVQIDKGSTTISWSKRHR-SRRIKSGFPDVDKFYQNVTGTCAPSLDLS 312
                 +KLE+R+VQ+D   T   WSK+H+ S   K    D  K   +    C+  LD+ 
Sbjct: 428 ELGAVTSKLEIRDVQVDNQVTMTRWSKKHKGSFPWKDSLDDRRKKDVDAVSRCS-DLDIP 486

Query: 313 EVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKA 372
            +  SISK++REEAKITAWENLQ+AKA+AAIRKLEMKLEK+R+ S DKI+NKLK AQ +A
Sbjct: 487 HIGKSISKVKREEAKITAWENLQKAKADAAIRKLEMKLEKKRATSMDKIMNKLKSAQKRA 546

Query: 373 QEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413
           QEMR S+ A Q  Q  +T+ K+  F++  PM S   CFTCH
Sbjct: 547 QEMRSSVMANQSPQDNRTSIKSLSFYRARPMGSLSGCFTCH 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2115085	427	AT4G36970 "AT4G36970" [Arabido	0.893	0.868	0.466	2.1e-68
TAIR|locus:1005716683	555	AT1G45207 "AT1G45207" [Arabido	0.857	0.641	0.357	6.1e-39
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.440	0.376	0.301	2.2e-17
TAIR|locus:2008625	347	AT1G67590 "AT1G67590" [Arabido	0.445	0.533	0.287	4.4e-17
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.433	0.353	0.269	1.4e-15
TAIR|locus:2197081	442	AT1G53860 "AT1G53860" [Arabido	0.344	0.323	0.309	1e-12
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.216	0.454	0.377	4.1e-11
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.395	0.863	0.273	1.9e-10
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.2	0.474	0.313	1.3e-08
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.236	0.462	0.316	5.3e-08

TAIR|locus:2115085 AT4G36970 "AT4G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 200/429 (46%), Positives = 243/429 (56%)

Query:    22 TSAEEHS-DTFPSPGAP-----KGWSSERVPHP---TSSS-----RRHI--SAASLTPFY 65
             TS   +S   F SPGAP     KGWSSERVPHP   TSSS     RRHI  S+A  TPFY
Sbjct:     4 TSVSSNSFGGFLSPGAPSYADNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFY 63

Query:    66 SGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPP-PRMHNSI 124
             SGRA+PSKWEDAERWICSPVS Y  G+   +S+ S+ QRR KSKSGPIVPP  P  H + 
Sbjct:    64 SGRAIPSKWEDAERWICSPVSTYPQGVCLNSSVSSE-QRRQKSKSGPIVPPTLPHPHPTS 122

Query:   125 YSPSTG---------MQVLDGGRVKNFVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYA 175
              S +TG         M+ +D       VAGSPFSTGVL ADR+   F G    +  G   
Sbjct:   123 SSSATGCYHYSPRMMMRSMDAPPKGLMVAGSPFSTGVLEADRV---FRGS---VGGGGCD 176

Query:   176 ARSRTSNVPGSGWXXX--XXXXXXXXXXXEKLDDIPDAE---AXXXXXXXXXDMATQMSP 230
                R    PG G                  K D    AE   A         DMATQMSP
Sbjct:   177 GYGRG---PGHGHSRSWVDLMSEETSSLSSKTDTEEKAEMTTAMQSPVVSRRDMATQMSP 233

Query:   231 ESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRH--RSRRIK 288
             E +   SP   +   P V SV E     P + EVREV++DKG+  I   KR    SR I+
Sbjct:   234 EET---SPNNNNQSPPLVVSVIE---PPPCRGEVREVKMDKGARMIKRPKRRVMSSRIIR 287

Query:   289 SGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEM 348
                P+V+    +     + S D+SE A ++SKLQREEAKI AWENLQ+AKAEAAIRKLE+
Sbjct:   288 REQPEVED--NSEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAAIRKLEV 345

Query:   349 KLEKERSYSTDKILNKLKLAQMKAQEMR-ISISAK----QGQ-QLPKTAHKAAFF-HKHG 401
             KLEK++S S DKILNKL+ A++KAQEMR  S+S++    QG  Q+ + + K      +H 
Sbjct:   346 KLEKKKSASMDKILNKLQTAKIKAQEMRRSSVSSEHEQQQGNHQISRNSVKITHLVRRHT 405

Query:   402 PMSSFRSCF 410
              M+ F +CF
Sbjct:   406 FMTPFMTCF 414

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:1005716683 AT1G45207 "AT1G45207" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 144/403 (35%), Positives = 193/403 (47%)

Query:    28 SDTFPSPGAPKGWSSERVPHPTSSSRRHI-SAASLTPFYSGRALP--SKWEDAERWICSP 84
             S  FPSPG P    S  +    SS R  + S    +P  +G  LP  S      +W  + 
Sbjct:   181 SSVFPSPGTPTYLHS--MQKGWSSERVPLRSNGGRSPPNAG-FLPLYSGRTVPSKWEDAE 237

Query:    85 ---VSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGGRVKN 141
                VS        + S  +  +RRPK+KSGP+  PP   + S+YSP+  M  + GG +  
Sbjct:   238 RWIVSPLAKEGAARTSFGASHERRPKAKSGPL-GPPGFAYYSLYSPAVPM--VHGGNMGG 294

Query:   142 FVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSGWXXXXXXXXXXXXX 201
               A SPFS GVL     S       F        ARS    V   G              
Sbjct:   295 LTASSPFSAGVLPETVSSRGSTTAAFPQRIDPSMARS----VSIHGCSETLASSSQDDIH 350

Query:   202 XEKLDDIPDAEAXXXXXXXXXDMATQMSPESSTNSSPRGKSSFSPAVRS---VAELQNDH 258
                 D   DA+A         DMATQMSPE S   SP  + SFSP+  S   ++EL N H
Sbjct:   351 ESMKDAATDAQAVSRR-----DMATQMSPEGSIRFSPERQCSFSPSSPSPLPISELLNAH 405

Query:   259 PAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASI 318
               + EV+++Q+D+  T   WSK+HR     +G     K   +V G      DL+   A+ 
Sbjct:   406 SNRAEVKDLQVDEKVTVTRWSKKHRGLYHGNG----SKMRDHVHGKATNHEDLT--CAT- 458

Query:   319 SKLQREEAKITAWENLQRAKAEAAIRKLE-----MKLEKERSYSTDKILNKLKLAQMKAQ 373
                  EEA+I +WENLQ+AKAEAAIRKLE     MKLEK+RS S +KI+ K+K A+ +A+
Sbjct:   459 -----EEARIISWENLQKAKAEAAIRKLEKYFPQMKLEKKRSSSMEKIMRKVKSAEKRAE 513

Query:   374 EMRISISAKQGQQLPKTAH-KAAFFHKHGP--MSSFRSCFTCH 413
             EMR S+      ++   +H KA+ F + G   + S   CFTCH
Sbjct:   514 EMRRSVL---DNRVSTASHGKASSFKRSGKKKIPSLSGCFTCH 553

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
 Identities = 57/189 (30%), Positives = 100/189 (52%)

Query:   229 SPESSTNSSPRGKSSFSP-AVRSVAELQNDHPAKLEVREVQIDKGSTTIS-W-SKRHRSR 285
             SP SS  SSP  ++S SP + + ++E +     + E+  +    G   I+ W SK    +
Sbjct:   295 SPISSEPSSPGRQASASPMSNKELSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDK 354

Query:   286 RIKSGFPDVDKFY--QNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAI 343
                +           ++V+   A + + +E A  +++ +REE KI AWEN Q+AK+EA +
Sbjct:   355 DASTSLKTKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEM 414

Query:   344 RKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPM 403
             +K E+K+E+ +  + D+++ KL   + KA+E R +  AK+  Q  KT  +A    + G +
Sbjct:   415 KKTEVKVERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKV 474

Query:   404 SSFR-SCFT 411
              S   SCF+
Sbjct:   475 PSLLFSCFS 483

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008625 AT1G67590 "AT1G67590" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
 Identities = 55/191 (28%), Positives = 95/191 (49%)

Query:   223 DMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRH 282
             DM T+M+P  S    P   ++   A   V       P +   R   +     T++  +R 
Sbjct:   151 DMGTEMTPIGS--QEPSRTATPVRATTPVGRSPVTSPVRASQRGEAVGVVMETVTEVRRV 208

Query:   283 RSRRIK--SGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAE 340
              S   +  +GF +  K    +    A + D +E A  +++ +REE KI AWEN ++ KAE
Sbjct:   209 ESNNSEKVNGFVESKKAMSAMEAR-AMAWDEAERAKFMARYKREEVKIQAWENHEKRKAE 267

Query:   341 AAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKH 400
               ++K+E+K E+ ++ + +K+ NKL   +  A+E R +  AK  ++  KT+ KA +  + 
Sbjct:   268 MEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRS 327

Query:   401 GPM-SSFRSCF 410
             G + SSF   F
Sbjct:   328 GHLPSSFSFSF 338

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 51/189 (26%), Positives = 100/189 (52%)

Query:   229 SPESSTNSSPRG----KSSFSPAVR-SVAELQNDHPAKLEVREVQIDKGSTTIS-WSKRH 282
             SP SS  S+PRG    +SS S   R  ++E +     + E+  + +  G   I+ W+ + 
Sbjct:   317 SPTSSLPSTPRGGQPEESSMSKNTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKE 376

Query:   283 RSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAA 342
                  K+   D ++  +      A + + +E +   ++ +REE +I AWE+ ++AK EA 
Sbjct:   377 EEENKKNN-GDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAE 435

Query:   343 IRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHG- 401
             +R++E K+E+ ++ +  KI+ K+ LA+ +++E R    A++ +   K   +A +  + G 
Sbjct:   436 MRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGR 495

Query:   402 -PMSSFRSC 409
              P SS++ C
Sbjct:   496 IPASSYKIC 504

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2197081 AT1G53860 "AT1G53860" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 47/152 (30%), Positives = 78/152 (51%)

Query:   273 STTISWSKRHRSRR-IKSGFPDVD---KFYQNVTGTCAPSLDLSEVAASI-SKLQREEAK 327
             S T  W+ R      I       D   +  ++V+ + AP  D  +       + QREEAK
Sbjct:   289 SVTSHWNSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAK 348

Query:   328 ITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQL 387
             I AW NL+ AKAEA  RKLE+K++K RS   +K++ ++ +   +A++ R +   +  +Q+
Sbjct:   349 IQAWVNLENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDMVHRRAEDWRATARQQHVEQM 408

Query:   388 PKTAHKAA-FFHKHGPMSSFRS---CFTCHHT 415
              K A  A    ++ G + + RS   C  C++T
Sbjct:   409 QKAAETARKLTNRRGYLVTGRSSCGCLPCNNT 440

GO:0003677 "DNA binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 160 (61.4 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query:   312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371
             SE + + +K Q++ + I AWEN ++A  EA ++K+E +LEK+++  T+K+ NK+ L   +
Sbjct:    99 SEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKE 158

Query:   372 AQEMRISISAKQGQQLPKTAHKAAFFHKHG 401
             A+E R  I AK+G+ L K    AA +   G
Sbjct:   159 AEEKRAMIEAKRGEDLLKAEELAAKYRATG 188

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 49/179 (27%), Positives = 86/179 (48%)

Query:   245 SPAVRSVAELQNDHPAKLEVREVQI-------DKGSTTISWS-KRHRSRRIKSGFPDVDK 296
             SPAV  +A  +   PA +EV + +I        K    +    + H  ++  SG  D D 
Sbjct:    14 SPAV--LAPAKEPTPAPVEVADEKIHNPPPVESKALAVVEKPIEEHTPKKASSGSADRDV 71

Query:   297 FYQNVTGTCAPSL----DLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEK 352
                ++      S     + SE + + ++ Q++ + + AWEN ++A  EA +RK+E KLEK
Sbjct:    72 ILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEK 131

Query:   353 ERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFR-SCF 410
             +++   +K+ NK+      A+E R  + AK+G++L K     A +   G +      CF
Sbjct:   132 KKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 26/83 (31%), Positives = 51/83 (61%)

Query:   319 SKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRIS 378
             +K Q++ + + AWEN ++A  EA ++K+E +L K++++ T+++ NK+     +A+E R  
Sbjct:    83 NKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAM 142

Query:   379 ISAKQGQQLPKTAHKAAFFHKHG 401
               AK+G+ + K    AA +   G
Sbjct:   143 TEAKRGEDVLKAEEMAAKYRATG 165

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 32/101 (31%), Positives = 60/101 (59%)

Query:   312 SEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMK 371
             SE + + +K +++ A + AWEN ++A  EA ++K+E +LEK+++   +++ NK+     +
Sbjct:   113 SEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKE 172

Query:   372 AQEMRISISAKQGQQLPKTAHKAAFFHKHG--PMSSFRSCF 410
             A+E R  I AK+G+ + K    AA +   G  P ++   CF
Sbjct:   173 AEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATC-GCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000520 hypothetical protein (391 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	9e-29

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  108 bits (272), Expect = 9e-29
 Identities = 45/103 (43%), Positives = 66/103 (64%)

Query: 306 APSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKL 365
           A + + +E A   +K QREEAKI AWEN ++AKAEA ++K+E KLEK+++ + +K+ NKL
Sbjct: 10  ADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKL 69

Query: 366 KLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRS 408
             A  KA+E R +  AK+G++  K   KAA     G + S  S
Sbjct: 70  AAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKLS 112

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	97.69
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	88.83
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	83.57

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=1.5e-35  Score=255.07  Aligned_cols=110  Identities=42%  Similarity=0.593  Sum_probs=106.1

Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014969          299 QNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRIS  378 (415)
Q Consensus       299 k~~~eaka~AWEeaEkaK~~~R~qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~  378 (415)
                      ++.+++++++||++|++|+.+||+|++++|++|||+||+|||++|+|+|++||+||++++|||+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchhhHHHHHHHhhccCCCCCCcccc
Q 014969          379 ISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCF  410 (415)
Q Consensus       379 AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~~gCF  410 (415)
                      +++++++++++++++|++||+||++|+  .||
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~--~~f  111 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPS--KCF  111 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCc--ccC
Confidence            999999999999999999999999994  454

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=97.69  E-value=0.00037  Score=60.79  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhcc
Q 014969          322 QREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKH  400 (415)
Q Consensus       322 qREEaKI~AWEN~QKAKAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~T  400 (415)
                      +..+++|.+||..+++|+....++.|.+|.-+=..--.|..-+|..++.+.|.+|+.+.++-.+.+..+..+|...|..
T Consensus         3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999988888888888889999999999999999999999999999999988864

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=88.83  E-value=6.3  Score=37.70  Aligned_cols=45  Identities=27%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969          338 KAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAK  382 (415)
Q Consensus       338 KAEA~mrKlE~KLEkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk  382 (415)
                      +|+..+...|.+|++-|.++.+.+.+-...++..+++.+..+++.
T Consensus       102 eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~e  146 (204)
T PRK09174        102 EADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEAS  146 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444445555554444444444444444444444444333

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=83.57  E-value=8.4  Score=35.92  Aligned_cols=32  Identities=13%  Similarity=0.123  Sum_probs=13.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014969          351 EKERSYSTDKILNKLKLAQMKAQEMRISISAK  382 (415)
Q Consensus       351 EkkRA~a~EKm~NKLa~a~rkAEekRA~AeAk  382 (415)
                      +..+..+.+.....++.++..-+..|..+...
T Consensus       115 ~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~  146 (181)
T PRK13454        115 DVAIAKADAEIAAKAAESEKRIAEIRAGALES  146 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 64/467 (13%), Positives = 128/467 (27%), Gaps = 156/467 (33%)

Query: 23  SAEEHSDTFPSPGAPKG-----WSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDA 77
           S EE      S  A  G     W+           ++ +    L   Y    L S  +  
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLS--KQEEMVQKFVEEV-LRINYK--FLMSPIKTE 101

Query: 78  ERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYS--PSTGMQVLD 135
           +R    P     + +  ++ L++  Q   K  +   + P  ++  ++    P+  + ++D
Sbjct: 102 QR---QPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNV-LID 156

Query: 136 GGRVKNFVAGSPFSTG--VLVAD-----RISGNFYGQGFLLHNGSYAARSRTSNVPGSGW 188
           G      V GS    G   +  D     ++      + F                    W
Sbjct: 157 G------VLGS----GKTWVALDVCLSYKVQCKMDFKIF--------------------W 186

Query: 189 SDLASDDSSPSSQDEKLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAV 248
            +L + +S P +  E L                + +  Q+ P    N + R   S +  +
Sbjct: 187 LNLKNCNS-PETVLEML----------------QKLLYQIDP----NWTSRSDHSSNIKL 225

Query: 249 RSVAE--------LQNDHPAKL----EVREVQI---------------DKGSTTISWSKR 281
           R  +             +   L     V+  +                 K  T    +  
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 282 HRSRRI---KSGF--PDVDKFYQNVTGTCAPSLDLSEVA--------ASISKLQREEAKI 328
                +          +V          C P  DL            + I++  R+   +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQ-DLPREVLTTNPRRLSIIAESIRDG--L 341

Query: 329 TAWENLQRAKAEAAIRKLEMKLE-------KER--------------------------S 355
             W+N +    +     +E  L        ++                            
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 356 YSTDKILNKLK---LAQMKAQEMRISISAKQGQQLPKTAHKAAFFHK 399
                ++NKL    L + + +E  ISI +   +   K  ++ A  H+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LHR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.0

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.00  E-value=5.6  Score=40.35  Aligned_cols=49  Identities=8%  Similarity=-0.010  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhccCCCCCC
Q 014969          358 TDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSF  406 (415)
Q Consensus       358 ~EKm~NKLa~a~rkAEekRA~AeAkr~eq~~Ka~eKA~~iR~TGk~Ps~  406 (415)
                      .+++.+++..++++-++++...++-+++-....++.-....++.+-|+.
T Consensus       539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~  587 (597)
T 3oja_B          539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT  587 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4455566777777777777666555544433334445555566555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00