Citrus Sinensis ID: 014978
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY07 | 532 | Pentatricopeptide repeat- | yes | no | 0.925 | 0.721 | 0.604 | 1e-141 | |
| O22714 | 491 | Pentatricopeptide repeat- | no | no | 0.920 | 0.778 | 0.339 | 1e-63 | |
| Q8LPS6 | 524 | Pentatricopeptide repeat- | no | no | 0.809 | 0.641 | 0.35 | 1e-61 | |
| Q3E911 | 491 | Pentatricopeptide repeat- | no | no | 0.816 | 0.690 | 0.361 | 6e-58 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.896 | 0.756 | 0.309 | 7e-51 | |
| Q9SKU6 | 490 | Pentatricopeptide repeat- | no | no | 0.836 | 0.708 | 0.356 | 3e-48 | |
| Q93WC5 | 502 | Pentatricopeptide repeat- | no | no | 0.910 | 0.752 | 0.292 | 2e-46 | |
| Q9FZ24 | 537 | Pentatricopeptide repeat- | no | no | 0.893 | 0.690 | 0.296 | 2e-43 | |
| Q94B59 | 409 | Pentatricopeptide repeat- | no | no | 0.607 | 0.616 | 0.334 | 2e-31 | |
| Q9C7F1 | 566 | Putative pentatricopeptid | no | no | 0.872 | 0.639 | 0.305 | 8e-29 |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/384 (60%), Positives = 305/384 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE++PD+MRG C++LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML++YI
Sbjct: 149 EKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYI 208
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S GQ +KVP +++ELK TSPD+VTYNLWL A AS ND E AEK +L+ K+ K++PDW++
Sbjct: 209 SRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVT 268
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS LT+LY K + EKA LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+
Sbjct: 269 YSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVK 328
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++
Sbjct: 329 SSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVL 388
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
+ E FY R+V KGI P Y+TWE+LTW YLK+ MEKVL+CF KAI SV+KW + RL+
Sbjct: 389 LGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKG 448
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
A +LEEQG++ GAE L+ L+ AG+V+T++YNSLLRTYAKAG+M LI+ ERM KDNV++
Sbjct: 449 ACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVEL 508
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET++++++TS+M V+E+SS S
Sbjct: 509 DEETKELIRLTSQMRVTEISSTIS 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 217/389 (55%), Gaps = 7/389 (1%)
Query: 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82
A+A + A EN+F +LP+ + T +LL+ Y + + +AE L+ KM E +
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMS 160
Query: 83 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
YN ++ LY G+ +KVP M+QELK +N PD TYN+W+ A A+ ND E+ E+
Sbjct: 161 YNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMN 220
Query: 142 KT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200
+ ++ PDW +YS + S+Y+ L +KA L+E+E + +++ AY L++LY +G
Sbjct: 221 RDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
Query: 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
EV RIW+ + K ++ Y +I LVKL + AE ++ EW++ T D R+ N+L
Sbjct: 281 TEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVL 340
Query: 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---- 316
+ AY ++ A + +G K TWE+ Y+K G M + LEC KA+
Sbjct: 341 IGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGK 400
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGK 375
G KW+P + A + E++ D++GAE+LL L+N ++ EI+ L+RTYA AGK
Sbjct: 401 GDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGK 460
Query: 376 MPLIIVERMQKDNVQMDAETQKVLKITSE 404
+ R++ +NV+++ T+K+L S+
Sbjct: 461 SHPAMRRRLKMENVEVNEATKKLLDEVSQ 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 200/340 (58%), Gaps = 4/340 (1%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FF LP+ + +LL++YV+ K +AEAL+ M + G+ PLP+N M+ LY+
Sbjct: 156 EEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYM 215
Query: 92 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDW 149
+ + DKV M+ E+K K+ D+ +YN+WL++C S E E + ++K I P+W
Sbjct: 216 NLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNW 275
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++ST+ ++YIKM EKA L+++E R +NR+ Y LLSLY ++G K E+ R+W
Sbjct: 276 TTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHV 335
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
S+ + + Y ++SSLV++G+ E AE +Y+EW + + DPR+PN+L+ AY+ +Q
Sbjct: 336 YKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQ 395
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPDHR 327
LE AE ++ +V G KP +TWE+L G+ +K + + L C + A + W P
Sbjct: 396 LETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVL 455
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367
+++ + EE+ D+ E +L LR +G + + Y +L+
Sbjct: 456 MLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 4/343 (1%)
Query: 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT 110
LL +YV+NK EAEALMEK++ GFL P P+N M+ LY ++GQ +KV ++ +K N
Sbjct: 149 LLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNK 208
Query: 111 SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168
P +V++YNLW+ AC + E + E+ K ++ W S TL ++YIK EKA
Sbjct: 209 IPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKA 268
Query: 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 228
L++ EK R NR+ Y L++LY ++G K+ V+R+W+ S+ +++ Y CV+SS
Sbjct: 269 RLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSS 328
Query: 229 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288
LVK G+ E+AE ++ EWE+ D RV N+LL AY+ ++ AES + ++ +G P
Sbjct: 329 LVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPN 388
Query: 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAE 346
Y TWE+L G++K MEK ++ + +R+ W P H ++ A E++ I+ A
Sbjct: 389 YKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEAT 448
Query: 347 HLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNV 389
+ L G S +Y LLR + A + I E M+ D +
Sbjct: 449 AYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 204/378 (53%), Gaps = 6/378 (1%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E +FENL ++ + T ALL+ YV+ + ++ EKM E GF+ L YN+++ LY
Sbjct: 113 EEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYT 172
Query: 92 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDW 149
+ GQ +KVP++L+E+K+ N +PD +Y + + A + D E ++ ++ I DW
Sbjct: 173 NIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDW 232
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y+ YI ++A LK E R +K+ Y+ L++LY +G K EVLR+W
Sbjct: 233 NTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDL 292
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
+ + + +Y V+ SLVK+ +AE + EW+S D RVPN ++ YI ++
Sbjct: 293 EKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSM 352
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRKWVPDH 326
E AE+ L +G +WEL+ Y +KG +E +C K A+G RKW P
Sbjct: 353 EEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGL 412
Query: 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-IIVERMQ 385
L+T+ + + ++G + E + +LRN V+ ++Y++L++ + G + +++RM+
Sbjct: 413 TLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMK 472
Query: 386 KDNVQMDAETQKVLKITS 403
D +++D ET +L S
Sbjct: 473 DDKIEIDEETTVILSTRS 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 195/362 (53%), Gaps = 15/362 (4%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE +P + R ALL+ Y K +AE + ++M E GFLK LPYN MLNLY+
Sbjct: 126 EKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYV 185
Query: 92 SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDW 149
G+ V ++L+E++ T PD+ T N L A + +D E EK + + + + DW
Sbjct: 186 RTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDW 245
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+Y+ + YIK L EKA L++ E+ +K + AY L+S Y G K+EV R+W
Sbjct: 246 RTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLW- 304
Query: 209 KMMSLFAKMN---DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 265
SL+ +++ + Y VIS+L+K+ + E+ E I +EWE+ D R+P++L+ Y
Sbjct: 305 ---SLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYC 361
Query: 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG-SVRKWVP 324
+ +E AE N LV K +TWE L GY G+MEK +E +K+AI S W P
Sbjct: 362 KKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRP 421
Query: 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 384
++ + + LE Q D++G +L L GH+S Y+ LL AG + IV+ M
Sbjct: 422 HQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS---YDQLLYDMNGAG-LSWKIVDAM 477
Query: 385 QK 386
K
Sbjct: 478 GK 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 206/383 (53%), Gaps = 5/383 (1%)
Query: 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79
+A+++ L+ A E +F +L D ++ T +LL+ Y K+ +A+A E M + +
Sbjct: 117 IAKSKGLE--AAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSN 174
Query: 80 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 138
LP+N+++ +Y+ GQ +KVP ++ +K K+ +P +TY++W+ +C S D + EK
Sbjct: 175 SLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLD 234
Query: 139 ELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197
E+K + + W +++ L ++YIK+ L KA LK +E R Y L++LYT +
Sbjct: 235 EMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGI 294
Query: 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257
EV R+W + + +N++ Y ++ +L KL + + + ++ EWES T D R+
Sbjct: 295 ANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMA 354
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI- 316
N+ +++Y+ +N E AE+ +N + K +LL LK Q + L+ F+ A+
Sbjct: 355 NVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVL 414
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ W LI++ + EE D+DGAE TL +S+E Y L++TY AGK
Sbjct: 415 DQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKA 474
Query: 377 PLIIVERMQKDNVQMDAETQKVL 399
+ +R+++ + +D E + +L
Sbjct: 475 CPDMKKRLEEQGILVDEEQECLL 497
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 193/378 (51%), Gaps = 7/378 (1%)
Query: 30 ARENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 88
A EN+F NL P T AL++ Y + +A+A E M E F+ LP+N+M++
Sbjct: 156 AAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMS 215
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKID 146
+Y+ Q +KVP ++ +K + SP VTY++W+ +C S ND + EK E+ K ++
Sbjct: 216 MYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAK 275
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206
W ++S L ++Y K L EKA + LK ME++ NR ++ L+SLY + EV R+
Sbjct: 276 TTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRV 335
Query: 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266
W+ + ++N+ Y ++ ++ KLG+ + + I+ EWES D R+ NI + Y+
Sbjct: 336 WESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLK 395
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV----RKW 322
N E AE + + K P +LL L+ + + ++ + A+ +W
Sbjct: 396 GNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEW 455
Query: 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVE 382
L++ + E+ D+DGAE L N + +E L++TYA A K + E
Sbjct: 456 GWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRE 515
Query: 383 RMQKDNVQMDAETQKVLK 400
R+ + +++ E Q +LK
Sbjct: 516 RLSQQQIEVSEEIQDLLK 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 141/257 (54%), Gaps = 5/257 (1%)
Query: 30 ARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLN 88
A E +FE L + +T ++LLH+Y +K++ AEAL +++ E L + YN M+
Sbjct: 141 AAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMT 200
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKID 146
LY+S GQ++KVP++++ LK K SPD+ TYNLWL++CA+ + + K E++ +
Sbjct: 201 LYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSN 260
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLK-EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
W+ Y LTS+YI A +TL E EK ++ + Y L+ L+T +G K + +
Sbjct: 261 EGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQ 320
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAY 264
IWK + + ++ Y CV+SS + LG +AE I +W ES + D +L A+
Sbjct: 321 IWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASACLRILNAF 380
Query: 265 INRNQLEMAESFYNRLV 281
+ +A F+ LV
Sbjct: 381 RDVGLEGIASGFHLILV 397
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 191/400 (47%), Gaps = 38/400 (9%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKCPLPYNHMLNLY 90
E FFE++P RG ++LL+SY ++ K+ +AEA +KM + G L P+PYN M++LY
Sbjct: 124 EKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLY 183
Query: 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPD 148
+ +KV ++L E+K N D VT N L ++ D EK + + I +
Sbjct: 184 SALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLE 243
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIW 207
W + + Y++ KA L+ E+ +K+ + AY L+ LY G ++EVLR+W
Sbjct: 244 WHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVW 303
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267
K S + ++ Y VI SL+K+ + AE IY WES+ D R+P +L + Y +R
Sbjct: 304 KLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDR 363
Query: 268 NQLEMAESFYN------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVL-------ECFKK 314
E AE N R + K + P L WG K K L + F K
Sbjct: 364 GMTEKAEKLMNSKTIKDRRMNKPVTPL-----LEQWGDQMKPSDLKCLIKNLRDSKQFSK 418
Query: 315 AIGSVRKWVPDHRLIT------AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE--IYNSL 366
A+ V +W+ + ++ AA L E ++ G E N + +Y +L
Sbjct: 419 AL-QVSEWMGEKQVCNLYLEDYAARLYLTE--NVLGLEEAEKYFENIPENMKDYSVYVAL 475
Query: 367 LRTYAKA----GKMPLIIVERMQKDNVQMDAET-QKVLKI 401
L +YAK+ G M I+ M+++NV D T VLK+
Sbjct: 476 LSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKV 515
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| 359490027 | 642 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.596 | 0.733 | 1e-167 | |
| 297737393 | 529 | unnamed protein product [Vitis vinifera] | 0.922 | 0.724 | 0.733 | 1e-167 | |
| 147804811 | 1111 | hypothetical protein VITISV_037299 [Viti | 0.840 | 0.314 | 0.732 | 1e-163 | |
| 224085447 | 513 | predicted protein [Populus trichocarpa] | 0.920 | 0.744 | 0.712 | 1e-158 | |
| 356536769 | 516 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.744 | 0.666 | 1e-152 | |
| 255559466 | 551 | pentatricopeptide repeat-containing prot | 0.925 | 0.696 | 0.668 | 1e-148 | |
| 449462348 | 531 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.721 | 0.657 | 1e-145 | |
| 357440753 | 562 | WD repeat-containing protein [Medicago t | 0.918 | 0.677 | 0.622 | 1e-141 | |
| 297814019 | 525 | pentatricopeptide repeat-containing prot | 0.925 | 0.731 | 0.601 | 1e-140 | |
| 15235508 | 532 | pentatricopeptide repeat-containing prot | 0.925 | 0.721 | 0.604 | 1e-139 |
| >gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/383 (73%), Positives = 328/383 (85%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+L DKM+G TC+ALLH+YVQNK S +AEALMEKMSECGFLKCPLPYNHM++LYI
Sbjct: 257 EKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYI 316
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQND ETAEK LE+KK KIDPDW++
Sbjct: 317 SDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVT 376
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS+LT+LYIK L +KAATTL EMEKRT RK R+AYSSL+SL+TNM KD V RIWKK+
Sbjct: 377 YSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLK 436
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+S TGD RVPNILLAAYIN+N++E
Sbjct: 437 SIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEME 496
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
MAE FYN++V +GI P YTTWELLTWGYLKK QMEKVL+ F+KA+GSV+KW PD +L+
Sbjct: 497 MAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLVRE 556
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR YAKAGKMPLI+ E M+KD V+M
Sbjct: 557 VYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEM 616
Query: 392 DAETQKVLKITSEMPVSEVSSIF 414
D ET +++K TS+M VSEVSS F
Sbjct: 617 DEETHRLIKETSKMCVSEVSSKF 639
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/383 (73%), Positives = 328/383 (85%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+L DKM+G TC+ALLH+YVQNK S +AEALMEKMSECGFLKCPLPYNHM++LYI
Sbjct: 144 EKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYI 203
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQND ETAEK LE+KK KIDPDW++
Sbjct: 204 SDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVT 263
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS+LT+LYIK L +KAATTL EMEKRT RK R+AYSSL+SL+TNM KD V RIWKK+
Sbjct: 264 YSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLK 323
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+S TGD RVPNILLAAYIN+N++E
Sbjct: 324 SIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEME 383
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
MAE FYN++V +GI P YTTWELLTWGYLKK QMEKVL+ F+KA+GSV+KW PD +L+
Sbjct: 384 MAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLVRE 443
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR YAKAGKMPLI+ E M+KD V+M
Sbjct: 444 VYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEM 503
Query: 392 DAETQKVLKITSEMPVSEVSSIF 414
D ET +++K TS+M VSEVSS F
Sbjct: 504 DEETHRLIKETSKMCVSEVSSKF 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/374 (73%), Positives = 321/374 (85%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+L DKM+G TC+ALLH+YVQNK S +AEALMEKMSECGFLKCPLPYNHM++LYI
Sbjct: 144 EKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYI 203
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQND ETAEK LE+KK KIDPDW++
Sbjct: 204 SDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVT 263
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS+LT+LYIK L +KAATTL EMEKRT RK R+AYSSL+SL+TNM KD V RIWKK+
Sbjct: 264 YSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTNMQDKDGVHRIWKKLK 323
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+S TGD RVPNILLAAYIN+N++E
Sbjct: 324 SIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSRVPNILLAAYINKNEME 383
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
MAE FYN++V +GI P YTTWELLTWGYLKK QMEKVL+ F+KA+GSV+KW PD +L+
Sbjct: 384 MAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKAVGSVKKWNPDEKLVRE 443
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR YAKAGKMPLI+ E M+KD V+M
Sbjct: 444 VYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEM 503
Query: 392 DAETQKVLKITSEM 405
D ET +++K TS+M
Sbjct: 504 DEETHRLIKETSKM 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa] gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/382 (71%), Positives = 318/382 (83%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE++PDKMR CSALLH YVQNK ++AEALMEKMSECGFLK LPYNHML++Y+
Sbjct: 128 EKFFEDIPDKMRDYQACSALLHVYVQNKSISKAEALMEKMSECGFLKNALPYNHMLSVYV 187
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
+NGQL+KV +++QELKK TSPDVVTYN+WL ACASQND ETAEK F+ELKK+K+DPDW++
Sbjct: 188 ANGQLEKVAEIIQELKKKTSPDVVTYNMWLTACASQNDVETAEKVFMELKKSKLDPDWVT 247
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YSTLT+LYIK E EKAA TLKE+EKR +KNRV YSSLLSL+ NM KD + R W KM
Sbjct: 248 YSTLTNLYIKKECLEKAAYTLKEVEKRASKKNRVTYSSLLSLHANMKDKDGLHRTWNKMK 307
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S+F KMNDAEY C+ISSLVKLGEF AEN+Y+EWES+S T D RV NI+LA+YINRNQ+E
Sbjct: 308 SVFNKMNDAEYNCMISSLVKLGEFGGAENLYNEWESVSATRDSRVSNIVLASYINRNQME 367
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
AE+F R+V KGI PCYTTWELLT G+LK QMEKVLE FKKA+ SVRKW PD RLI
Sbjct: 368 DAENFCQRMVQKGITPCYTTWELLTCGHLKTEQMEKVLENFKKALCSVRKWTPDKRLIGD 427
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
+ LEE+GDI+GAE LLV LR+AGHVST IYNSLLRTYAKAGKMP+II ERMQKDNV++
Sbjct: 428 IFKNLEERGDIEGAEKLLVILRDAGHVSTMIYNSLLRTYAKAGKMPVIIEERMQKDNVEL 487
Query: 392 DAETQKVLKITSEMPVSEVSSI 413
D ET K+++ TS M VSEVSS+
Sbjct: 488 DDETHKLIQTTSTMCVSEVSSL 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/384 (66%), Positives = 310/384 (80%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+LPD+MRG TCSALLH+YVQN +AEALM KMSEC L PLPYNHM++LYI
Sbjct: 133 EKFFEDLPDRMRGKQTCSALLHAYVQNNLVDKAEALMLKMSECDLLINPLPYNHMISLYI 192
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
SNG+L+KVP+++QELK NTSPD+VT+NLWLAACASQND ETAE+ LELKK KIDPDW++
Sbjct: 193 SNGKLEKVPKIIQELKMNTSPDIVTFNLWLAACASQNDVETAERVLLELKKAKIDPDWVT 252
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YSTLT+LYIK EKA T+KEME RT RK RVAYSSLLSL+TNMG KD+V RIW+KM
Sbjct: 253 YSTLTNLYIKNASLEKAGATVKEMENRTSRKTRVAYSSLLSLHTNMGNKDDVNRIWEKMK 312
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
+ F KMND EY C+ISSL+KLG+F AE++Y EWES+SGT D RV NILL +YIN++Q+E
Sbjct: 313 ASFRKMNDNEYICMISSLLKLGDFAGAEDLYREWESVSGTNDVRVSNILLGSYINQDQME 372
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
MAE F N++V KG+ PCYTTWEL TWGYLK+ +EK L+ F KAI SV KW PD RL+
Sbjct: 373 MAEDFCNQIVQKGVIPCYTTWELFTWGYLKRKDVEKFLDYFSKAISSVTKWSPDQRLVQE 432
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
A+ +EEQ GAE LLV LRNAGHV+T IYN L+TYA AGKMP+I+ ERM+KDNV++
Sbjct: 433 AFKIIEEQAHTKGAEQLLVILRNAGHVNTNIYNLFLKTYATAGKMPMIVAERMRKDNVKL 492
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET+++L +TS+M VS+VS I S
Sbjct: 493 DEETRRLLDLTSKMCVSDVSRILS 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/386 (66%), Positives = 318/386 (82%), Gaps = 2/386 (0%)
Query: 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79
VA+ + L + E FFE+LPD+MRG TC+ALLH+YV+ K +AEALMEKM +C F+K
Sbjct: 114 VAKVRGLTSA--EKFFEDLPDEMRGWQTCTALLHTYVKCKDVVKAEALMEKMRDCSFVKN 171
Query: 80 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 139
PLPYNHM++LYI++G+ DK ++++ELKK+T+PDVVT+NLWL+ CAS ND E+A+K LE
Sbjct: 172 PLPYNHMISLYIADGEFDKAKRIVEELKKSTTPDVVTFNLWLSMCASLNDVESAKKVLLE 231
Query: 140 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199
LKK KI+ DWI+YSTLT+LY+K +L E A +TLKEMEKR RKNR+AYSSLLSLYTNMG
Sbjct: 232 LKKLKIEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKRASRKNRLAYSSLLSLYTNMGD 291
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
KD V RIW KM SLF KMNDAEYTC++SSL+KL E EKAEN+Y EWES+SGTGDP+V NI
Sbjct: 292 KDAVHRIWNKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGDPQVANI 351
Query: 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319
LLAAYINRNQ+E +E+FY R+V KG+ PCYTTWELLTWG+LK QMEKVL+CFKKAI V
Sbjct: 352 LLAAYINRNQIEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQMEKVLDCFKKAITIV 411
Query: 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 379
+ W PD RL+ + LEE+G+ +GAE LV LRNAG+VSTEIYNSLLRTYAKAGKMPLI
Sbjct: 412 KTWSPDKRLVREVFKILEEKGNAEGAEEFLVMLRNAGYVSTEIYNSLLRTYAKAGKMPLI 471
Query: 380 IVERMQKDNVQMDAETQKVLKITSEM 405
+ ERM+KD V++D ET +++K TS M
Sbjct: 472 VTERMKKDGVELDEETHRLIKTTSSM 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Cucumis sativus] gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/383 (65%), Positives = 306/383 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+LPDK+R C++LLH+YVQN S +AEALMEKMSECGFLK PL +NHML+L+I
Sbjct: 136 EKFFEDLPDKIREQSVCTSLLHAYVQNNLSEKAEALMEKMSECGFLKSPLSFNHMLSLHI 195
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
SN QL+KVP +++ LKKNT PDVVTYNL L C QND E AE FLE+KKTKI PDW+S
Sbjct: 196 SNKQLEKVPALIEGLKKNTKPDVVTYNLLLNVCTLQNDTEAAENIFLEMKKTKIQPDWVS 255
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
+STL +LY K +L EKAA TLKEMEK + NR++ SSLLSLYTN+G K+EV RIWKK+
Sbjct: 256 FSTLANLYCKNQLTEKAAATLKEMEKMAFKSNRLSLSSLLSLYTNLGDKNEVYRIWKKLK 315
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KM+D EY C+ISSLVKL E E+AE +Y EWES+SGT D RV N++L AYI +NQ+E
Sbjct: 316 SSFRKMSDREYMCMISSLVKLNELEEAEKLYTEWESVSGTRDTRVSNVMLGAYIKKNQIE 375
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
AESFYNR++ KG P YTTWELLTWGYLK+ QMEKVL F+KA+ V+KW D RL+
Sbjct: 376 QAESFYNRMLQKGTVPSYTTWELLTWGYLKENQMEKVLHFFRKAVNRVKKWNADERLVKG 435
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
KLEEQG+I+G E LL+ LRNAGHV TEIYNSLLRTYAKAGKMPLI+ ERM++DNVQ+
Sbjct: 436 VCKKLEEQGNINGVEQLLLILRNAGHVDTEIYNSLLRTYAKAGKMPLIVAERMERDNVQL 495
Query: 392 DAETQKVLKITSEMPVSEVSSIF 414
+ ET+++L++TS+M VSEVSS
Sbjct: 496 NDETRELLRLTSKMCVSEVSSTL 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula] gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/387 (62%), Positives = 308/387 (79%), Gaps = 6/387 (1%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+LPDKMRG TC+ALLH+YVQN + +AEALM KMSECGFL+ P+PYN M++LYI
Sbjct: 125 EKFFEDLPDKMRGQPTCTALLHAYVQNNLTNKAEALMSKMSECGFLRSPVPYNRMMSLYI 184
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
SNG+L+KVP++ +ELK NTSPDVVT+NL L ACAS+ND ETAE+ L+LKK K+DPDW++
Sbjct: 185 SNGKLEKVPKLFEELKVNTSPDVVTFNLLLTACASENDVETAERVLLQLKKAKVDPDWVT 244
Query: 152 YSTLTSLYIKM----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 207
YSTLT+LYI+ + EKAA+TLKEMEKRT R+ RVAYSSLLSL+ NMG DEV RIW
Sbjct: 245 YSTLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGNVDEVNRIW 304
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267
KM + F KM+D EY C+ISSLVKLG+F EN+Y EWES+SGT D RV N+LL +Y+++
Sbjct: 305 GKMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKEWESVSGTNDVRVSNLLLTSYVDQ 364
Query: 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 327
Q+EMAE F N+LV KG+ Y++WELLT GYLKK ++K L F KAI SV++W+PD R
Sbjct: 365 GQMEMAEIFCNQLVEKGVCLSYSSWELLTRGYLKKKDVKKFLHYFGKAISSVKQWIPDPR 424
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKD 387
L+ A+ ++EQ I+GAE LLV LRNAGHV+T IYN L+TYA AGKMPL++ ERM+KD
Sbjct: 425 LVQEAFTVIQEQAHIEGAEQLLVILRNAGHVNTNIYNLFLKTYAAAGKMPLVVAERMKKD 484
Query: 388 NVQMDAETQKVLKITSEMPVSEVSSIF 414
NVQ+D ET ++L +TS+M V +S+++
Sbjct: 485 NVQLDKETHRLLDLTSKMCV--ISAVY 509
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 305/384 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE+LPD+MRG C++LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML+++I
Sbjct: 142 EKFFEDLPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMFI 201
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S GQ +KV +++ELK TSPD+VTYNLWL A AS ND E AEK +L+ K++K++PDW++
Sbjct: 202 SKGQFEKVSVLIKELKMKTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKESKLNPDWVT 261
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS LT+LY K + EKA LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+
Sbjct: 262 YSVLTNLYAKTDNLEKAKLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVR 321
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++
Sbjct: 322 SSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEIL 381
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
+ E FY R+V KGI P Y+TWE+LTW YLK+ +EKVL+CF+KAI SV+KW + RL+ A
Sbjct: 382 LGEKFYERIVEKGINPSYSTWEILTWAYLKRKDLEKVLDCFEKAIDSVKKWTVNVRLVKA 441
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
+LEEQG++ GAE L+ L+ AGHV+T++YNSLLRTYAKAG+M LI+ ERM KDNV++
Sbjct: 442 VCKELEEQGNVKGAEKLMTLLQKAGHVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVEL 501
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET++++++TS M V+E+SS S
Sbjct: 502 DEETKELIRLTSRMRVTEISSTIS 525
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02820, mitochondrial; Flags: Precursor gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana] gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana] gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/384 (60%), Positives = 305/384 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE++PD+MRG C++LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML++YI
Sbjct: 149 EKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYI 208
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S GQ +KVP +++ELK TSPD+VTYNLWL A AS ND E AEK +L+ K+ K++PDW++
Sbjct: 209 SRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVT 268
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS LT+LY K + EKA LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+
Sbjct: 269 YSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVK 328
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++
Sbjct: 329 SSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVL 388
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
+ E FY R+V KGI P Y+TWE+LTW YLK+ MEKVL+CF KAI SV+KW + RL+
Sbjct: 389 LGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKG 448
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
A +LEEQG++ GAE L+ L+ AG+V+T++YNSLLRTYAKAG+M LI+ ERM KDNV++
Sbjct: 449 ACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVEL 508
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET++++++TS+M V+E+SS S
Sbjct: 509 DEETKELIRLTSQMRVTEISSTIS 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.925 | 0.721 | 0.604 | 1.7e-128 | |
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.920 | 0.778 | 0.339 | 8.8e-63 | |
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.809 | 0.641 | 0.35 | 3.5e-59 | |
| TAIR|locus:2146390 | 491 | AT5G27460 "AT5G27460" [Arabido | 0.862 | 0.729 | 0.355 | 1.7e-57 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.896 | 0.756 | 0.309 | 2.4e-51 | |
| TAIR|locus:2051379 | 490 | AT2G20710 [Arabidopsis thalian | 0.865 | 0.732 | 0.354 | 2.5e-49 | |
| TAIR|locus:2141360 | 502 | AT4G01990 [Arabidopsis thalian | 0.910 | 0.752 | 0.292 | 2.9e-48 | |
| TAIR|locus:2204808 | 537 | AT1G02370 "AT1G02370" [Arabido | 0.893 | 0.690 | 0.296 | 3.4e-45 | |
| TAIR|locus:2184807 | 409 | AT5G09450 "AT5G09450" [Arabido | 0.534 | 0.542 | 0.345 | 1.5e-33 | |
| TAIR|locus:2010459 | 566 | AT1G28020 "AT1G28020" [Arabido | 0.821 | 0.602 | 0.302 | 1.3e-31 |
| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 232/384 (60%), Positives = 305/384 (79%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE++PD+MRG C++LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML++YI
Sbjct: 149 EKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYI 208
Query: 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151
S GQ +KVP +++ELK TSPD+VTYNLWL A AS ND E AEK +L+ K+ K++PDW++
Sbjct: 209 SRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVT 268
Query: 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211
YS LT+LY K + EKA LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+
Sbjct: 269 YSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVK 328
Query: 212 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271
S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++
Sbjct: 329 SSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVL 388
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
+ E FY R+V KGI P Y+TWE+LTW YLK+ MEKVL+CF KAI SV+KW + RL+
Sbjct: 389 LGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKG 448
Query: 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQM 391
A +LEEQG++ GAE L+ L+ AG+V+T++YNSLLRTYAKAG+M LI+ ERM KDNV++
Sbjct: 449 ACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVEL 508
Query: 392 DAETQKVLKITSEMPVSEVSSIFS 415
D ET++++++TS+M V+E+SS S
Sbjct: 509 DEETKELIRLTSQMRVTEISSTIS 532
|
|
| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 132/389 (33%), Positives = 217/389 (55%)
Query: 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82
A+A + A EN+F +LP+ + T +LL+ Y + + +AE L+ KM E +
Sbjct: 101 AKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMS 160
Query: 83 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
YN ++ LY G+ +KVP M+QELK +N PD TYN+W+ A A+ ND E+ E+
Sbjct: 161 YNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMN 220
Query: 142 KT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200
+ ++ PDW +YS + S+Y+ L +KA L+E+E + +++ AY L++LY +G
Sbjct: 221 RDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
Query: 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
EV RIW+ + K ++ Y +I LVKL + AE ++ EW++ T D R+ N+L
Sbjct: 281 TEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVL 340
Query: 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI---- 316
+ AY ++ A + +G K TWE+ Y+K G M + LEC KA+
Sbjct: 341 IGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGK 400
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGK 375
G KW+P + A + E++ D++GAE+LL L+N ++ EI+ L+RTYA AGK
Sbjct: 401 GDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGK 460
Query: 376 MPLIIVERMQKDNVQMDAETQKVLKITSE 404
+ R++ +NV+++ T+K+L S+
Sbjct: 461 SHPAMRRRLKMENVEVNEATKKLLDEVSQ 489
|
|
| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 119/340 (35%), Positives = 200/340 (58%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FF LP+ + +LL++YV+ K +AEAL+ M + G+ PLP+N M+ LY+
Sbjct: 156 EEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYM 215
Query: 92 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDW 149
+ + DKV M+ E+K K+ D+ +YN+WL++C S E E + ++K I P+W
Sbjct: 216 NLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNW 275
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
++ST+ ++YIKM EKA L+++E R +NR+ Y LLSLY ++G K E+ R+W
Sbjct: 276 TTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHV 335
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
S+ + + Y ++SSLV++G+ E AE +Y+EW + + DPR+PN+L+ AY+ +Q
Sbjct: 336 YKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQ 395
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV--RKWVPDHR 327
LE AE ++ +V G KP +TWE+L G+ +K + + L C + A + W P
Sbjct: 396 LETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVL 455
Query: 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367
+++ + EE+ D+ E +L LR +G + + Y +L+
Sbjct: 456 MLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
|
|
| TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 130/366 (35%), Positives = 202/366 (55%)
Query: 32 ENFFENLPDK---MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87
E +FE L MR LL +YV+NK EAEALMEK++ GFL P P+N M+
Sbjct: 126 EEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMM 185
Query: 88 NLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-I 145
LY ++GQ +KV ++ +K N P +V++YNLW+ AC + E + E+ K +
Sbjct: 186 KLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSV 245
Query: 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
+ W S TL ++YIK EKA L++ EK R NR+ Y L++LY ++G K+ V+R
Sbjct: 246 EVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVR 305
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 265
+W+ S+ +++ Y CV+SSLVK G+ E+AE ++ EWE+ D RV N+LL AY+
Sbjct: 306 LWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYV 365
Query: 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WV 323
++ AES + ++ +G P Y TWE+L G++K MEK ++ + +R+ W
Sbjct: 366 RNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWR 425
Query: 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVER 383
P H ++ A E++ I+ A + L G S +Y LLR + A + I E
Sbjct: 426 PSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEM 485
Query: 384 MQKDNV 389
M+ D +
Sbjct: 486 MKLDKL 491
|
|
| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 117/378 (30%), Positives = 205/378 (54%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E +FENL ++ + T ALL+ YV+ + ++ EKM E GF+ L YN+++ LY
Sbjct: 113 EEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYT 172
Query: 92 SNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDW 149
+ GQ +KVP++L+E+K+ N +PD +Y + + A + D E ++++ + I DW
Sbjct: 173 NIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDW 232
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y+ YI ++A LK E R +K+ Y+ L++LY +G K EVLR+W
Sbjct: 233 NTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDL 292
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269
+ + + +Y V+ SLVK+ +AE + EW+S D RVPN ++ YI ++
Sbjct: 293 EKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSM 352
Query: 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRKWVPDH 326
E AE+ L +G +WEL+ Y +KG +E +C K A+G RKW P
Sbjct: 353 EEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGL 412
Query: 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-IIVERMQ 385
L+T+ + + ++G + E + +LRN V+ ++Y++L++ + G + +++RM+
Sbjct: 413 TLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMK 472
Query: 386 KDNVQMDAETQKVLKITS 403
D +++D ET +L S
Sbjct: 473 DDKIEIDEETTVILSTRS 490
|
|
| TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 131/370 (35%), Positives = 194/370 (52%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91
E FFE +P + R ALL+ Y K +AE + ++M E GFLK LPYN MLNLY+
Sbjct: 126 EKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYV 185
Query: 92 SNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDW 149
G+ V ++L+E++ T PD+ T N L A + +D E EK + + + + DW
Sbjct: 186 RTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDW 245
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+Y+ + YIK L EKA L++ E+ +K + AY L+S Y G K+EV R+W
Sbjct: 246 RTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWS 305
Query: 209 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268
L N Y VIS+L+K+ + E+ E I +EWE+ D R+P++L+ Y +
Sbjct: 306 LYKELDGFYNTG-YISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKG 364
Query: 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDH 326
+E AE N LV K +TWE L GY G+MEK +E +K+AI V K W P
Sbjct: 365 MMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAI-EVSKPGWRPHQ 423
Query: 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 386
++ + + LE Q D++G +L L GH+S Y+ LL AG + IV+ M K
Sbjct: 424 VVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS---YDQLLYDMNGAG-LSWKIVDAMGK 479
Query: 387 DNVQMDAETQ 396
+ E +
Sbjct: 480 GRYVEEREVR 489
|
|
| TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 112/383 (29%), Positives = 204/383 (53%)
Query: 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79
+A+++ L+ A E +F +L D ++ T +LL+ Y K+ +A+A E M + +
Sbjct: 117 IAKSKGLE--AAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSN 174
Query: 80 PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFL 138
LP+N+++ +Y+ GQ +KVP ++ +K K+ +P +TY++W+ +C S D + EK
Sbjct: 175 SLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLD 234
Query: 139 ELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197
E+K W +++ L ++YIK+ L KA LK +E R Y L++LYT +
Sbjct: 235 EMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGI 294
Query: 198 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257
EV R+W + + +N++ Y ++ +L KL + + + ++ EWES T D R+
Sbjct: 295 ANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMA 354
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI- 316
N+ +++Y+ +N E AE+ +N + K +LL LK Q + L+ F+ A+
Sbjct: 355 NVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVL 414
Query: 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376
+ W LI++ + EE D+DGAE TL +S+E Y L++TY AGK
Sbjct: 415 DQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKA 474
Query: 377 PLIIVERMQKDNVQMDAETQKVL 399
+ +R+++ + +D E + +L
Sbjct: 475 CPDMKKRLEEQGILVDEEQECLL 497
|
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| TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 112/378 (29%), Positives = 193/378 (51%)
Query: 30 ARENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 88
A EN+F NL P T AL++ Y + +A+A E M E F+ LP+N+M++
Sbjct: 156 AAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMS 215
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKID 146
+Y+ Q +KVP ++ +K + SP VTY++W+ +C S ND + EK E+ K ++
Sbjct: 216 MYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAK 275
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206
W ++S L ++Y K L EKA + LK ME++ NR ++ L+SLY + EV R+
Sbjct: 276 TTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRV 335
Query: 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266
W+ + ++N+ Y ++ ++ KLG+ + + I+ EWES D R+ NI + Y+
Sbjct: 336 WESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLK 395
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK----W 322
N E AE + + K P +LL L+ + + ++ + A+ + W
Sbjct: 396 GNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEW 455
Query: 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVE 382
L++ + E+ D+DGAE L N + +E L++TYA A K + E
Sbjct: 456 GWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRE 515
Query: 383 RMQKDNVQMDAETQKVLK 400
R+ + +++ E Q +LK
Sbjct: 516 RLSQQQIEVSEEIQDLLK 533
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| TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 78/226 (34%), Positives = 128/226 (56%)
Query: 30 ARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLN 88
A E +FE L + +T ++LLH+Y +K++ AEAL +++ E L + YN M+
Sbjct: 141 AAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMT 200
Query: 89 LYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-TKID 146
LY+S GQ++KVP++++ LK K SPD+ TYNLWL++CA+ + + K E++ +
Sbjct: 201 LYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSN 260
Query: 147 PDWISYSTLTSLYIKMELPEKAATTLK-EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
W+ Y LTS+YI A +TL E EK ++ + Y L+ L+T +G K + +
Sbjct: 261 EGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQ 320
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251
IWK + + ++ Y CV+SS + LG +AE I +W+ T
Sbjct: 321 IWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTT 366
|
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| TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 110/364 (30%), Positives = 178/364 (48%)
Query: 32 ENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSECGFLKCPLPYNHMLNLY 90
E FFE++P RG ++LL+SY ++ K+ +AEA +KM + G L P+PYN M++LY
Sbjct: 124 EKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLY 183
Query: 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPD 148
+ +KV ++L E+K N D VT N L ++ D EK + + I +
Sbjct: 184 SALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLE 243
Query: 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIW 207
W + + Y++ KA L+ E+ +K+ + AY L+ LY G ++EVLR+W
Sbjct: 244 WHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVW 303
Query: 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267
K S + ++ Y VI SL+K+ + AE IY WES+ D R+P +L + Y +R
Sbjct: 304 KLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDR 363
Query: 268 NQLEMAESFYNRLVTKGIKPCYTTWELLT-WG-YLKKGQMEKVLEC------FKKAIGSV 319
E AE N K + LL WG +K ++ +++ F KA+ V
Sbjct: 364 GMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQMKPSDLKCLIKNLRDSKQFSKAL-QV 422
Query: 320 RKWVPDHRLIT------AAYNKLEEQG-DIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYA 371
+W+ + ++ AA L E ++ AE + N S +Y +LL +YA
Sbjct: 423 SEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYS--VYVALLSSYA 480
Query: 372 KAGK 375
K+ K
Sbjct: 481 KSDK 484
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY07 | PP302_ARATH | No assigned EC number | 0.6041 | 0.9253 | 0.7218 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00051160 | hypothetical protein (514 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 415 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 15/272 (5%)
Query: 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 107
C++L+ Y+ EAE + +M E K + + M++ Y NG DK + ++
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRM-ET---KDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 108 -KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166
N SPD +T L+ACA D + ++L + ISY + + I+M
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVG----VKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226
K E+ K+ ++++S+++ E L +++M+ L K N +
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286
S+ ++G + I+ D +PN LL Y+ ++ A + +N K +
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDV- 554
Query: 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318
+W +L GY+ G+ +E F + + S
Sbjct: 555 ---VSWNILLTGYVAHGKGSMAVELFNRMVES 583
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 15/202 (7%)
Query: 94 GQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150
GQ+D+ V QM+ E +P+V Y + + +C+ + D + A + ++KK + PD +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210
+S L + +KA L++ K+ + V+YSSL+ +N + L +++ +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-----ILLAAYI 265
S+ + + +I++L + + KA + E + + PN ILL A
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-----LCPNTITYSILLVASE 765
Query: 266 NRNQLEMAESFYNRLVTKGIKP 287
++ ++ ++ GIKP
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKP 787
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 18/345 (5%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 107
+A+L +V+ + A + KM E + +N ++ Y G D+ + L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 108 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167
PDV T+ L C D + + + + D + L ++Y+K
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227
A M +R C +++++++S Y G E L ++ M L + T VIS
Sbjct: 241 ARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287
+ LG+ ++ D V N L+ Y++ AE ++R+ TK
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA-- 354
Query: 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347
+W + GY K G +K LE + A+ PD I + + GD+D
Sbjct: 355 --VSWTAMISGYEKNGLPDKALETY--ALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 348 LLVTLRNAGHVSTEIY-NSLLRTYAKAGKM--PLIIVERMQKDNV 389
L G +S + N+L+ Y+K + L + + + +V
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
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Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 155
PDVVTYN + + E A K F E+KK I P+ +YS L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 118
YN +++ Y G++++ ++ E+KK P+V TY+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 2e-05
Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 3/212 (1%)
Query: 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-VAYS 188
E E L+ L +K+ E+A L++ + N A
Sbjct: 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL 99
Query: 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248
+L L +G +E L + +K ++L + AE + +L +LG++E+A +Y++ +
Sbjct: 100 NLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL 159
Query: 249 SGTGDPRVPNILLAA--YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306
+ +L + E A + + L YLK G+ E
Sbjct: 160 DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219
Query: 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338
+ LE ++KA+ + +L
Sbjct: 220 EALEYYEKALELDPDNAEALYNLALLLLELGR 251
|
Length = 291 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 109
AL+ Y + +A + + M E K + +N ML Y +G ++ + E++ +
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 110 -TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168
S D T+++ + + E A++A L +T D ++ + L LY K E A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 228
M RKN +++++L++ Y N G + + ++++M++ N + V+S+
Sbjct: 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 229 LVKLGEFEKAENIY 242
G E+ I+
Sbjct: 436 CRYSGLSEQGWEIF 449
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Length = 697 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 41/245 (16%)
Query: 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 149
Y+ +GQ DK ++L+K + +NL A + D A +AF K I+PD+
Sbjct: 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF--EKALSIEPDF 498
Query: 150 I-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208
+ + L + I+ P+ A +++ KN A +L LY G ++E + +
Sbjct: 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLE 557
Query: 209 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268
K L + + + G+ +KA I +E AA +
Sbjct: 558 KAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE-----------------AADAAPD 599
Query: 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328
E W +L L G + K + FKK + L
Sbjct: 600 SPEA-------------------WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640
Query: 329 ITAAY 333
+ AY
Sbjct: 641 LADAY 645
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 21/194 (10%)
Query: 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214
L +Y K E A M K VA++S+L+ Y GY +E L ++ +M
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNI-LLAAYINRNQLE 271
++ ++ +I +L E A+ + + TG P V N L+ Y ++E
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAH---AGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331
A + ++R+ K + +W L GY G+ K +E F++ I P+H A
Sbjct: 378 DARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLA 431
Query: 332 -----AYNKLEEQG 340
Y+ L EQG
Sbjct: 432 VLSACRYSGLSEQG 445
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 95 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 153
QL K ++L E+K+ P+ +TY++ L A ++D + + K+ I P+ +
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
Query: 154 TLTSLYIKM 162
+T L ++
Sbjct: 794 CITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 258 NILLAAYINRNQLEMAESFYNRLVTKGIKP 287
N L+ Y + ++E A +N + +GIKP
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.003
Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 5/255 (1%)
Query: 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL--KKNTSPDV 114
+ + E L E + + + G+L++ ++L++ +
Sbjct: 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA 95
Query: 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174
+ E A + + DPD ++ E+A ++
Sbjct: 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155
Query: 175 MEKRTCRKNR--VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232
+ N A +L +L +G +E L + +K + L + + +KL
Sbjct: 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215
Query: 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 292
G++E+A Y++ + + L + + E A + +
Sbjct: 216 GKYEEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGL 274
Query: 293 ELLTWGYLKKGQMEK 307
LL +EK
Sbjct: 275 ALLLLLAEALELLEK 289
|
Length = 291 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (88), Expect = 0.004
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 3/217 (1%)
Query: 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221
++ A L E + + + L+L +G E L + ++ + L + A
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 222 -YTCVISSLVKLGEFEKAENIYDEW-ESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279
+ +L+KLG E+A + ++ E L + E A +
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339
+ P L + G E+ LE ++KA+ + + A LE
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 340 GDIDGA-EHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375
G + A E L L+ E +L Y K GK
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.62 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.07 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.0 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.83 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.65 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.23 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.15 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.13 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.05 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.01 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.99 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.99 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.99 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.95 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.94 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.9 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.89 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.63 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.45 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.57 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.57 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.53 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.51 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.5 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.37 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.34 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.22 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.15 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.09 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.93 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.22 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.73 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.31 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.31 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.91 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.74 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.12 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.91 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.11 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.03 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.81 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.52 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.26 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.21 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.16 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.16 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.12 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.93 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.3 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 88.75 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.35 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.91 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.78 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.6 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.11 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.82 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.63 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.43 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.43 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.3 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.82 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.66 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.34 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 85.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.79 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.64 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 84.41 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 83.89 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.58 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.23 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.19 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.04 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.96 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.68 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.39 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 82.31 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 81.8 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.66 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 81.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.19 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.04 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=460.69 Aligned_cols=378 Identities=16% Similarity=0.222 Sum_probs=358.1
Q ss_pred HHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 22 QAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
+.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 416 ~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4566777777777777766 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--c
Q 014978 102 MLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK--R 178 (415)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 178 (415)
+|++|.+. ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999877 88999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .++.||..+|+.||.+|++
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~--~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS--IKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 014978 339 QGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKITS 403 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~l~~~~ 403 (415)
.|++++|.++|++|.+.|.. +..+|+.++.+|++.|++ +..++..|.+.|+.||..+++.|..++
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999887 568999999999999998 699999999999999999997555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=455.18 Aligned_cols=390 Identities=13% Similarity=0.201 Sum_probs=370.3
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCC---CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 19 RVAQAQALQTRARENFFENLPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
...+.+.|++++|+++|+.|...+ ++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 346678999999999999999864 4566778899999999999999999999975 899999999999999999
Q ss_pred cCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++.|.++|+.|.+. ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999887 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH--cccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS--LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+ .++.||..+|+.|
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k--~G~~pd~~tynsL 690 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK--QGIKLGTVSYSSL 690 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-c
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-V 407 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~ 407 (415)
+.+|++.|++++|.++|++|.+.+.. +..+||.||.+|++.|++ |..+|++|...|+.||..|| .++.+|++.+ .
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998877 568999999999999999 69999999999999999999 6888888877 6
Q ss_pred ccccccc
Q 014978 408 SEVSSIF 414 (415)
Q Consensus 408 ~~~~~~~ 414 (415)
+++.++|
T Consensus 771 e~A~~l~ 777 (1060)
T PLN03218 771 DVGLDLL 777 (1060)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=425.26 Aligned_cols=378 Identities=19% Similarity=0.150 Sum_probs=315.7
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
..+++.|++++|.++|+.|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 367899999999999999987 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 100 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+++..+.+. ..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999887 89999999999999999999999999999986 478899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
|+.||..+|+.++.+|++.|+++.|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999885 46788999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 338 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 338 (415)
.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+ .++.+|..+++.|+.+|++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~--~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR--TGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH--hCCCccceechHHHHHHHH
Confidence 999999999999999999999986 4889999998888888888888777777777776 5666655555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-cccccccc
Q 014978 339 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-VSEVSSIF 414 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~~~~~~~~ 414 (415)
.|++++|.++|+.+ .++..+||++|.+|++.|+. |..+|++|.+.|+.||..|| .+|.+|++.+ ++++.++|
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 55555555555554 23445555555555555555 35555555555555555555 3455555544 44444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=412.29 Aligned_cols=357 Identities=17% Similarity=0.258 Sum_probs=216.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH-------------
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM------------- 86 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 86 (415)
..+++.|++++|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 367899999999999999987 89999999999999999999999999999888777766655554
Q ss_pred ----------------------HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 87 ----------------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 87 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+|++.|++++|.++|+.|. ++|..+||.++.+|++.|++++|.++|++|.+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 455555555555555555553 3455555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHH
Q 014978 145 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224 (415)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (415)
+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555552 244555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCCCHhHHHHHHHHHHhcC
Q 014978 225 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKPCYTTWELLTWGYLKKG 303 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~ 303 (415)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 5555555555555555555555555555555555555555555555555555555543 355555555555555555555
Q ss_pred CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHH
Q 014978 304 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIV 381 (415)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~ 381 (415)
++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+|.+..+|+.|+++|++.|++ |.+++
T Consensus 477 ~~~eA~~~~~~~-----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA-----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 555555555442 34455555555555555555555555555555554444445555555555555555 35555
Q ss_pred HHHHhCCCC
Q 014978 382 ERMQKDNVQ 390 (415)
Q Consensus 382 ~~m~~~~~~ 390 (415)
+.|++.|++
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=412.28 Aligned_cols=371 Identities=17% Similarity=0.228 Sum_probs=336.0
Q ss_pred HHHHHhhhhHHHHHHHHhcCcC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 20 VAQAQALQTRARENFFENLPDK---MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
..+.+.|++++|+++|+.|... .|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 3568899999999999999764 3688999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--------------------------
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------------------------- 150 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------------------------- 150 (415)
++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 175 ~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 175 IDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999996 5799999999999999999999999999998777666544
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh
Q 014978 151 ---------SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221 (415)
Q Consensus 151 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (415)
+|+.|+++|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55778888999999999999999986 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
|+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 688999999999999
Q ss_pred cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCC--c
Q 014978 302 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVS-TEIYNSLLRTYAKAGKM--P 377 (415)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~--a 377 (415)
.|+.++|.++|++|.+ .++.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.| ..+|+.++.+|++.|++ |
T Consensus 404 ~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999998 79999999999999999999999999999999986 46654 48899999999999998 4
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 378 LIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 378 ~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
.++++ +.++.|+..+| .++.+|...+
T Consensus 482 ~~~~~---~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 482 YAMIR---RAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHH---HCCCCCCHHHHHHHHHHHHHcC
Confidence 55554 45789999999 5888887766
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=414.59 Aligned_cols=370 Identities=14% Similarity=0.123 Sum_probs=347.0
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 21 AQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 46899999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 101 QMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
+++..+.+. ..||..+|+.++.+|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999998877 89999999999999999999999999999986 4688999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
+.||..||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 578899999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ .++.|+..+++.|+.+|++.
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~--~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER--KGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP 406 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~ 406 (415)
|++++|.++|++|.+. +..+|+.++.+|++.|+. |..+|.+|.. +++||..|+ .+|.+|++.+
T Consensus 438 g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 438 KCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred CCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 9999999999998653 456799999999999998 6889999975 699999999 6888888776
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-27 Score=234.10 Aligned_cols=381 Identities=15% Similarity=0.088 Sum_probs=228.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.+...|++++|.+.|+.+....| +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 33444455555555554444333 33444455555555555555555555554433 23344444555555555556666
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+++.+.+..+.+..+|..++.++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+..
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666655555555555566666666666666666666666665543 3344455556666666666666666666665542
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
+.+..++..++..+...|++++|..+++.+.+..+ .+...+..+...+...|++++|...++.+.... |+..++..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 33455566666666666666666666666655532 244555666666666777777777777666543 33355566
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
++.++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+ ..+++...+..+...+...
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 6667777777777777777766643 23556666777777777777777777777766 2345566677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhccCC-ccccccc
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~~~-~~~~~~~ 413 (415)
|+ .+|+..++++.+..+.++..+..+...+.+.|++ |...++.+.+.+-. +..++ .+...+...+ .+++.++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 77 6677777777777666666777777777777777 56777777776543 55555 4555555555 5455443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-27 Score=232.99 Aligned_cols=360 Identities=13% Similarity=0.089 Sum_probs=243.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+..+.+.|++++|+++++.+....| ++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 34455666777777777776665544 55667777777777777777777777776653 33455566666777777777
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|.+.|+++.+..|.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..|.+.|++++|.++++.+.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777766666677777777777777777777777777776653 4455566667777777777777777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
+.. +.+...|..+..++...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..+
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 552 45566777777777777777777777777766532 244556667777777777777777777776653 335566
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.. ..|+..++..++.++
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK----RAPSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCchHHHHHHHHH
Confidence 6677777777777777777777776654 23555666666677777777777777777665 234445666666667
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.+.|++++|.+.++.+.+..+.+...+..+...|.+.|++ |...|+.+.+.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777777777777766666666677777777777766 45566666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=196.64 Aligned_cols=292 Identities=15% Similarity=0.084 Sum_probs=131.3
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC----HhHHHHHHHHHHhcCCHH
Q 014978 56 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD----VVTYNLWLAACASQNDKE 131 (415)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 131 (415)
...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+....+.+ ..++..++..+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 1223334444444444444444444444443321000 123444444444555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN----RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544431 23334444455555555555555555554444321111 112333444444555555555555
Q ss_pred HHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 287 (415)
+++.+..+. +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 555443211 233444444555555555555555555544322211233444555555555555555555555443 23
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcC
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 356 (415)
+...+..++..+.+.|++++|..+++++++ ..|+..++..++..+.. .|+.+++..+++++.+.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 334444555555555555555555555544 23555555544444432 235555555555555433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=187.04 Aligned_cols=304 Identities=15% Similarity=0.123 Sum_probs=253.4
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYI 160 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~ 160 (415)
......+...|++++|+..|.++.+..|.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445667889999999999999988888888999999999999999999999999987642222 246788999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh----hhHHHHHHHHHhcCChH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND----AEYTCVISSLVKLGEFE 236 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 236 (415)
+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998763 456788999999999999999999999999887544322 23556777888999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
+|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 335667888899999999999999999999976433234578889999999999999999999998
Q ss_pred hcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---cCCC--cHHHHHHHHhCCCCC
Q 014978 317 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK---AGKM--PLIIVERMQKDNVQM 391 (415)
Q Consensus 317 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~--a~~~~~~m~~~~~~p 391 (415)
+ ..|+...+..++..+.+.|++++|..+++++.+..|. ...++.++..+.. .|+. +..+++.|.+.+++|
T Consensus 277 ~----~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 E----EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred H----hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 7 3577777788999999999999999999999987554 4467777777765 3455 588899999988888
Q ss_pred CHH
Q 014978 392 DAE 394 (415)
Q Consensus 392 ~~~ 394 (415)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 876
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=181.57 Aligned_cols=365 Identities=16% Similarity=0.176 Sum_probs=314.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYISNGQ 95 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 95 (415)
.+..+-..|++++|+.+++.+.+..| ..++|..+..++...|+.+.|.+.|.+.++.+ |+.... ..+...+...|+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc
Confidence 56677889999999999999999877 57899999999999999999999999998864 654443 445566667899
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+++|...|.+..+..|.-...|..|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.+++|...|.+
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 999999999988877777889999999999999999999999999987 444 45899999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 254 (415)
..... +.....+..+...|...|..+-|+..|++.++..+. -...|+.+..++-..|++.+|.+.+++..... +...
T Consensus 278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 88762 345677888999999999999999999999985432 34589999999999999999999999998875 3367
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAA 332 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l 332 (415)
...+.|...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|+..++++++ +.|+. ..++.+
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fAda~~Nm 428 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchHHHHHHhc
Confidence 78889999999999999999999999874 454 35788999999999999999999999987 77875 689999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t 395 (415)
...|-..|+.+.|.+.+.+.+..+|.-.++++.|...|-.+|+...++-..-....++||...
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999999999998888899999999999999996666555555667777554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-22 Score=187.89 Aligned_cols=333 Identities=11% Similarity=0.026 Sum_probs=276.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
....+.+.+.|++++|+.+++......| ++..+..++.+....|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3445677899999999999999888877 56777888888889999999999999999875 446677888889999999
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++++|...++++.+..|.+...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999887664 2333344333 347889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH----HHHHHHHHHhccC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK----AENIYDEWESISG 250 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 250 (415)
+.+....++...+..+..++...|++++|+..++++.+..+. +...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 887643344455566678889999999999999999987543 56678889999999999986 899999998865
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHH
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLI 329 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~ 329 (415)
+.+...+..+...+...|++++|...+++...... .+...+..+...+.+.|++++|+..++.+.. ..|+. ..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~----~~P~~~~~~ 355 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAR----EKGVTSKWN 355 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccchHHH
Confidence 34677889999999999999999999999998642 2456777888999999999999999999987 34554 334
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 330 TAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..+..++...|++++|...|+++.+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 44567789999999999999999988776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-22 Score=186.30 Aligned_cols=368 Identities=13% Similarity=0.043 Sum_probs=289.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
....|..+.+.|++++|+..|+.+....|++..|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4466788899999999999999999988998999999999999999999999999999875 345678888999999999
Q ss_pred CcCcHHHHHHHHhhc------------------------------CCCCHhHHHHHHHHH--------------------
Q 014978 95 QLDKVPQMLQELKKN------------------------------TSPDVVTYNLWLAAC-------------------- 124 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~-------------------- 124 (415)
++++|+..|..+... .+++...+..+...+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998766543211 111111111111100
Q ss_pred ----------------HhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 125 ----------------ASQNDKETAEKAFLELKKTK-I-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 125 ----------------~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +.+...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 12357889999999998765 2 3345678888999999999999999999998863 334668
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888999999999999999999999886433 56788889999999999999999999998875 3366778888999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCC---CHH-HHHHHHHHHHHcCCh
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP---DHR-LITAAYNKLEEQGDI 342 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p---~~~-~~~~l~~~~~~~g~~ 342 (415)
.|++++|...|++.++.. +.+...++.+...+...|++++|+..|++++.......+ +.. .+...+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999999998753 225678899999999999999999999999873211111 111 122222334457999
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 343 DGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
++|..++++....++.+..++..+...+.+.|++ |...|++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998888888999999999999999 56667766554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-21 Score=177.99 Aligned_cols=358 Identities=11% Similarity=0.068 Sum_probs=292.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 21 AQAQALQTRARENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+.+..+|+.-.-+|...++... +......++..+.+.|++++|..+++...... +-+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 45677888888888888777633 23344566778889999999999999998864 33455666777788889999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|...|+++....|.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999873 4566788899999999999999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 663 2334444343 3478899999999999998876544445555666778899999999999999998875 446778
Q ss_pred HHHHHHHHHhcCcHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 257 PNILLAAYINRNQLEM----AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..+...+...|++++ |...|++..+..+ .+...+..+...+...|++++|+..+++++.. -+.+...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 8889999999999986 8999999988642 25678899999999999999999999999882 23345677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
..++...|++++|...++++...++.+...+..+..++...|+. |...+....+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999998887666666677889999998 46667766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-20 Score=186.89 Aligned_cols=357 Identities=14% Similarity=0.099 Sum_probs=238.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---cHH--------
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYN-------- 84 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~-------- 84 (415)
..+..+...|++++|+..|+.+....| ++.++..+...+.+.|++++|+..|++..+.. |+.. .|.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhH
Confidence 346778889999999999999988877 77899999999999999999999999998764 3321 121
Q ss_pred ----HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 85 ----HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 85 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
.....+.+.|++++|+..|+++.+..|.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 224467789999999999999998888888999999999999999999999999998763 334445555555443
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 161 KMELPEKAATTLKEMEKRTCR--------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
.++.++|..+++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...+.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23445555444433211000 00112233334444445555555555554443222 233344444445555
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHH--------------------------------------------HHHHHHHhcC
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPN--------------------------------------------ILLAAYINRN 268 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~g 268 (415)
|++++|...++++.+.. +.+...+. .+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555444322 11222211 2334455556
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
+.++|..+++. .+++...+..+...+.+.|++++|+..|+++++ .-+.+...+..++..+...|++++|+..
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666665551 123455666777888888888888888888887 2344567788888888888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 349 LVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
++.+.+..+.+...+..+..++...|++ |.++++.....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8888877777777778888888888888 56677776654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=167.78 Aligned_cols=350 Identities=16% Similarity=0.142 Sum_probs=299.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+.++...|+.+.|.+.|..+.+..|+.... +-+...+-..|+.++|...|.+..+.. +-=...|..|...+-.+
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQ 231 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhc
Confidence 4566778899999999999999999987765443 344555566899999999999998864 22367899999999999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
|+...|+..|++..+..|.-...|-.|...|...+.++.|...|.+..... +.....+..+...|...|.++.|+..|+
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHH
Confidence 999999999999998878888999999999999999999999999988763 4456688889999999999999999999
Q ss_pred HHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 174 EMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 174 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
+..+. .|+ ...|+.|..++-..|+..+|...|.+.....+. .....+.|...+...|.+++|..+|....+.. +.
T Consensus 311 ral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~ 386 (966)
T KOG4626|consen 311 RALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PE 386 (966)
T ss_pred HHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hh
Confidence 99986 454 678999999999999999999999999886433 45678889999999999999999999988754 22
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLIT 330 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~ 330 (415)
-...++.|...|-+.|++++|...+++.+. +.|+. ..|+.+...|...|+.+.|++.+.+++. +.|.. +.++
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~AeAhs 460 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTFAEAHS 460 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHHHHHHh
Confidence 466789999999999999999999999988 56764 5899999999999999999999999987 56654 6789
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 331 AAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.|...|...|++.+|++-|++..+..|..+.+|..++.+..--.+|
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999999999999777777777666544444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-19 Score=171.94 Aligned_cols=376 Identities=11% Similarity=-0.021 Sum_probs=253.3
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
..++........-.|+.++|+++++......| +...+..+...+...|++++|.++|++..+.. +.+...+..+..++
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455556667788888888888888775323 44567888888888888888888888887753 34455666777778
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
...|++++|+..++++.+..|.+.. +..+..++...|++++|+..++++.+.. +.+...+..+..++...+..++|++
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 8888888888888888777777777 8888888888888888888888888763 3344555556666666666555554
Q ss_pred HHH----------------------------------------------HHHhc-CCCCCHH-HHH----HHHHHHHcCC
Q 014978 171 TLK----------------------------------------------EMEKR-TCRKNRV-AYS----SLLSLYTNMG 198 (415)
Q Consensus 171 ~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~ 198 (415)
.++ .+.+. ...|+.. .+. ..+.++...|
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 444 33321 0112111 111 1122345667
Q ss_pred ChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCcHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
++++|+..|+++.+.+.+ |+. ....+..++...|++++|...|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 888888888888776532 222 22224667788888888888888876543211 1233455666777888888888
Q ss_pred HHHHHHHhCCC-----------CCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 275 SFYNRLVTKGI-----------KPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 275 ~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.+++.+..... .|+. ..+..+...+...|++++|++.++++.. ..+.+...+..+...+...|
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 88888776421 1221 2345566677788888888888888876 34455677777888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 396 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 396 (415)
++++|++.++++....|.+...+..+...+...|++ +..+++.+.+ ..|+....
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 888888888888888877777777777788888887 4666776665 34555544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-20 Score=183.06 Aligned_cols=366 Identities=10% Similarity=-0.008 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcc---hHH------------HHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGPD---TCS------------ALLHSYVQNKKSAEAEALMEKMSECGFL 77 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (415)
...+..+..+.+.|++++|+..|+.+.+..|+.. .|. .....+.+.|++++|++.|+++.+.. +
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-N 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3456677788899999999999999887766432 121 22446778999999999999998874 3
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH--------------------------------
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA-------------------------------- 125 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------- 125 (415)
.+...+..+..++...|++++|++.|+++.+..|.+...+..+...+.
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 456677778889999999999999999988776777766666655543
Q ss_pred ----------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014978 126 ----------SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195 (415)
Q Consensus 126 ----------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (415)
..|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3344444444444444432 2223334444444444444444444444444321 122222323333333
Q ss_pred cCCChHHHHHHHHHHHHcccccCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMND---------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
..++.++|+..++.+......++. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 444444444444433211111000 0112234456667777777777662 24566778889999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
.|++++|...|++..+..+ .+...+..++..+...|++++|++.++.+.. .-+.+...+..+..++...|++++|.
T Consensus 616 ~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998642 3677899999999999999999999998876 22335566777888899999999999
Q ss_pred HHHHHHHHcCCC-CH-----HHHHHHHHHHHhcCCC--cHHHHHHH-HhCCCC
Q 014978 347 HLLVTLRNAGHV-ST-----EIYNSLLRTYAKAGKM--PLIIVERM-QKDNVQ 390 (415)
Q Consensus 347 ~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~--a~~~~~~m-~~~~~~ 390 (415)
++++.+....+. ++ .++..+...+...|++ |...++.- ...|+.
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 999999886554 22 4567778889999998 45555544 444554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-19 Score=166.05 Aligned_cols=356 Identities=15% Similarity=0.070 Sum_probs=269.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+..|.+...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456678889999999999999999875 478888999999999999999999999999988888999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHHHH---------------------
Q 014978 128 NDKETAEKAFLELKKTKI-----------------------------DPDWISYSTLTS--------------------- 157 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~-----------------------------~~~~~~~~~l~~--------------------- 157 (415)
|++++|+..|......+- +++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432210 000000000000
Q ss_pred ---------HH------HhcCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh
Q 014978 158 ---------LY------IKMELPEKAATTLKEMEKRT-CRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 220 (415)
Q Consensus 158 ---------~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (415)
.+ ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..+++..+..+. ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 00 11257889999999988764 223 4566888888999999999999999999886432 355
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.++... .+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 78888889999999999999999998875 44678899999999999999999999999998642 25667888888999
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhc
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE-------IYNSLLRTYAKA 373 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 373 (415)
+.|++++|+..|++++. ..+.+...+..+..++...|++++|...|++.....+.... .++..+..+...
T Consensus 445 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999987 34456788899999999999999999999999987765221 122233334445
Q ss_pred CCC--cHHHHHHHHhCCCCCCHHH-H-HHHHHhccCC-ccccccc
Q 014978 374 GKM--PLIIVERMQKDNVQMDAET-Q-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 374 g~~--a~~~~~~m~~~~~~p~~~t-~-~~l~~~~~~~-~~~~~~~ 413 (415)
|++ |..+++..... .|+... + .+...+...+ .+++.+.
T Consensus 522 ~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 522 QDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 777 46666665554 455543 2 3444444444 4555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-17 Score=157.60 Aligned_cols=374 Identities=13% Similarity=0.041 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH--HHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM--LNL 89 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~ 89 (415)
..+..++..++.|+++.|+..|+++.+..|+. ..+ .++..+...|+.++|+..+++.... -+...+..+ ...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHH
Confidence 46778888999999999999999999887764 244 8888888999999999999998831 123333333 557
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
+...|++++|+++|+++.+..|.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 888899999999999999988888889989999999999999999999999877 566666655555555567776799
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHH-----------------------------------------------
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE----------------------------------------------- 202 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------------- 202 (415)
+.++++.+.. +.+...+..+..++.+.|-...
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998873 3345555555555544443322
Q ss_pred -HHHHHHHHHHc-ccccChhh-----HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 203 -VLRIWKKMMSL-FAKMNDAE-----YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 203 -a~~~~~~~~~~-~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
|+.-++.+... +..|.... ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 23333333331 12232211 223345677788888888888888876654445566778888888888888888
Q ss_pred HHHHHHhCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc-----------CCCCCHH-HHHHHHHHHHH
Q 014978 276 FYNRLVTKG-----IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR-----------KWVPDHR-LITAAYNKLEE 338 (415)
Q Consensus 276 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~p~~~-~~~~l~~~~~~ 338 (415)
++..+.... ..++......|..++...+++++|..+++.+.+... ...||-. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 888876532 122334456778888888888888888888876211 1122333 33445666778
Q ss_pred cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH
Q 014978 339 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ 396 (415)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 396 (415)
.|+..+|++.++.+....|.+......+...+...|.+ |...++..... .|+....
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~ 486 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLIL 486 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHH
Confidence 88888888888888888888888888888888888887 46566443333 5665554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-17 Score=159.23 Aligned_cols=340 Identities=11% Similarity=0.005 Sum_probs=261.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+..+...|++++|.++|+.+....| ++..+..++..+...|++++|+..+++..+.. +.+.. +..+..++...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHC
Confidence 45667788999999999999999888766 56778888999999999999999999998874 44555 88888899999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH-----------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL----------------------------------- 138 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------- 138 (415)
|+.++|+..++++.+..|.+...+..+..++...+..+.|+..++
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 999999999999998888888888888887777776665554443
Q ss_pred -----------HHHhC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCCh
Q 014978 139 -----------ELKKT-KIDPDWI-SYS----TLTSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 139 -----------~~~~~-g~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 200 (415)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. .-..+..++...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 33322 1122211 111 1133456779999999999999887522 332 222357789999999
Q ss_pred HHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC-----------CCC---CchHHHHHHH
Q 014978 201 DEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----------TGD---PRVPNILLAA 263 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 263 (415)
++|+..|+++.+..... .......+..++...|++++|...++.+....+ .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 99999999987754221 123456667788999999999999999887532 112 1244567788
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCCh
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDI 342 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 342 (415)
+...|+.++|.++++++.... +.+...+..+...+...|++++|++.+++++. ..|+ ...+...+..+...|++
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCH
Confidence 899999999999999998763 23677888999999999999999999999987 3454 67777778889999999
Q ss_pred hHHHHHHHHHHHcCCCCHHH
Q 014978 343 DGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~ 362 (415)
++|+.+++++.+..|.+..+
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 99999999999998886543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-15 Score=144.03 Aligned_cols=365 Identities=12% Similarity=0.037 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..|..+..+...|++++|+..|+.+.+..| ++.++..|...|.+.|++++|+..+++..+.. |+...|..++..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i-- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh--
Confidence 355666666777999999999999999877 56788899999999999999999999999864 5444444433222
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHH---------------------------------------HH-HHHHHhcCCHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYN---------------------------------------LW-LAACASQNDKET 132 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------------------------~l-~~~~~~~~~~~~ 132 (415)
+++++|..+++++.+..|.+..++. .. ..+|.+.+++++
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 7788888888877665444433332 22 556677888888
Q ss_pred HHHHHHHHHhCCCCC------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 133 AEKAFLELKKTKIDP------------------------------DWISYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 133 a~~~~~~~~~~g~~~------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
|+.++.++.+.+... +...+..+...|.+.|+.++|.+++.++...
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999887764211 1222234555566666666666666554321
Q ss_pred --------------------------------------------------------CC----------------------
Q 014978 179 --------------------------------------------------------TC---------------------- 180 (415)
Q Consensus 179 --------------------------------------------------------~~---------------------- 180 (415)
++
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 014978 181 -------------------------------------------------------------------------------- 180 (415)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (415)
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence
Q ss_pred -------------------------------CC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 181 -------------------------------RK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 181 -------------------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
++ +...|..+..++.. +++++|+..+.+..... |+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 00 11111111111111 22233333333333221 22222222233
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 307 (415)
.+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+... ++...+..+.....+.|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHH
Confidence 334667777777777665443 33334455556666677777777777777766431 122223333334445588888
Q ss_pred HHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIVERMQ 385 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a--~~~~~~m~ 385 (415)
|...++++++ ..|+...+..+..++.+.|++++|...+++.....|.+...++.+...+...|+++ ...+++..
T Consensus 595 Al~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888776 45677778888888888888888888888888888888888888888888888873 44555444
Q ss_pred hCCCCCCHHH
Q 014978 386 KDNVQMDAET 395 (415)
Q Consensus 386 ~~~~~p~~~t 395 (415)
+ ..|+...
T Consensus 671 ~--l~P~~~~ 678 (987)
T PRK09782 671 K--GLPDDPA 678 (987)
T ss_pred H--hCCCCHH
Confidence 4 3455443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-16 Score=138.71 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHH-HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHH--HHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSAL-LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN--HMLNLYIS 92 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 92 (415)
+..|+...-.|+++.|.+.+....+..+++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+..
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 334444444455555555555444432223222222 22224555555555555555443 23332221 12334445
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.|+++.|...++++.+..|.+......+...|.+.|++++|..++..+.+.+..++. ....+-
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------- 228 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------- 228 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------
Confidence 555555555555555444555555555555555555555555555555544322111 111000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
..+|..++.......+.+...++++..... .+.+......+...+...|+.++|.+++++..+. ++
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 011222222222223333333333333221 1123334444444555555555555555444442 22
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+... .++.+....++.+++.+..+...+..+ -|...+..+...|.+.+++++|.+.|+.+.+ ..|+...+..+
T Consensus 295 ~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~L 367 (398)
T PRK10747 295 DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWL 367 (398)
T ss_pred CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 2211 112222233455555555555444321 1333444445555555555555555555544 34555555555
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..++.+.|+.++|.+++++..
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-16 Score=137.12 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch-HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CH--hHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGIKP-CY--TTWE 293 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~--~~~~ 293 (415)
+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+. .| |+ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHH
Confidence 334444445555555555555555555544321111100 011111112234455555555555543 22 22 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
++...+.+.|++++|.+.|+.+.. ....|+...+..+...+.+.|+.++|.+++++..
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555566666666666666663222 2245566555566666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-15 Score=144.42 Aligned_cols=339 Identities=14% Similarity=0.039 Sum_probs=229.6
Q ss_pred hhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-CCCCcccHHHHHHHHHhcCC------
Q 014978 25 ALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-G-FLKCPLPYNHMLNLYISNGQ------ 95 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~------ 95 (415)
.+...+|...+..+....| +......+.-...+.|+.++|.++|+..... + -.++......++..|.+.+.
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 3455555555555555433 5555555555556677777777777766542 1 11122223345555555444
Q ss_pred -------------------cCcHHHHHHHHhh---cCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 014978 96 -------------------LDKVPQMLQELKK---NTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 151 (415)
Q Consensus 96 -------------------~~~a~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 151 (415)
+.++...+..... ..|+ +...|..+..++.. +++++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222222222222 2355 77788888888876 7888899988887766 466554
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
...+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+..+. +...+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444555567889999999999887654 455555667778888899999999999988876422 22233333444455
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 232 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
.|++++|...+++..+.. |+...+..+..++.+.|+.++|...+++.....+ .+...++.+...+...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999999999888754 4577888888899999999999999999888642 2556777888888899999999999
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
++++++ ..+-+...+..+..++...|++++|+..++++.+..|.+..+.-.......+..+
T Consensus 666 l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 666 LERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 999887 2344667888888899999999999999999988887765554444444444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-15 Score=122.69 Aligned_cols=350 Identities=13% Similarity=0.141 Sum_probs=251.4
Q ss_pred HHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CC
Q 014978 33 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TS 111 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 111 (415)
-+|+..++ ...+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-+-... .+++.+|... ..
T Consensus 198 L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 44444433 7789999999999999999999999999887778899999999876544322 7888888877 99
Q ss_pred CCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC
Q 014978 112 PDVVTYNLWLAACASQNDKET----AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEMEK----RTCRK 182 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 182 (415)
||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998865 56788999999999999999999999999888754 5555555543 22222
Q ss_pred ----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc----ccccChh---hHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 183 ----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 183 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
|...|...+..|.+..+.+-|.++..-.... .+.|+.. -|..+....|.....+.....|+.+.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 4455777888888889998888877665432 1233322 3566777788889999999999999877778
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CH--------HH-----HHHHHH---H
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QM--------EK-----VLECFK---K 314 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~---~ 314 (415)
|+..+...++++....|.++-.-++|..+...|...+...-..++..+++.+ .. .. |..+++ .
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999988775444444444444444433 11 10 111111 1
Q ss_pred hHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-HHHHHHH---HHHHHhcCCC--cHHHHHHHHhC
Q 014978 315 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-S-TEIYNSL---LRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 315 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l---~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.....+.........+.+...+.+.|..++|.+++..+.+.+-. | ....|++ ++.-.+.... |...++-|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 11111223445566777788899999999999999999665433 2 2344544 4444444444 56666767655
Q ss_pred CC
Q 014978 388 NV 389 (415)
Q Consensus 388 ~~ 389 (415)
++
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 54
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=138.79 Aligned_cols=363 Identities=13% Similarity=0.116 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
..|..|-++-..|++++|...|.......++. ..+-.|.+.+.+.|+++.+...|+...+.. +.+..+...+...|.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHH
Confidence 45666777788888888888888877776654 344567788888888888888888888763 345566666666666
Q ss_pred hcC----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcC
Q 014978 92 SNG----QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK----KTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 92 ~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..+ ..++|..++.+..+..+.|...|-.+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 654 45667777777766677888888888887766555544 66655443 4455577788888888888889
Q ss_pred CHHHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh-hHHHHHHHHHhcC
Q 014978 164 LPEKAATTLKEMEKR---TCRKNR------VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLG 233 (415)
Q Consensus 164 ~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 233 (415)
++++|...|...... ...++. .+-..+...+-..++++.|.+.|..+.... |.-. .|..++......+
T Consensus 467 ~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 467 NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhcc
Confidence 988888888887654 111222 223345555666677777778777776643 2222 2333332223345
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHh-----------
Q 014978 234 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLK----------- 301 (415)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~----------- 301 (415)
...+|...++.+...+ ..++..++.+...+.....+..|.+-|....+.- ..+|..+...|...|.+
T Consensus 545 ~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 5566666666555433 2244444444444444444444444333333211 11233333333332221
Q ss_pred -cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cH
Q 014978 302 -KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PL 378 (415)
Q Consensus 302 -~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~ 378 (415)
.+..++|+++|.+++. .-+-|...-+.+.-.++..|++..|..+|.++++.......+|..+.++|..+|+| |.
T Consensus 624 ~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 1223444444444443 12223344444444444444444444444444444333334444444444444444 34
Q ss_pred HHHHHH
Q 014978 379 IIVERM 384 (415)
Q Consensus 379 ~~~~~m 384 (415)
++|+..
T Consensus 701 qmYe~~ 706 (1018)
T KOG2002|consen 701 QMYENC 706 (1018)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-15 Score=138.91 Aligned_cols=361 Identities=13% Similarity=0.030 Sum_probs=266.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-hHHHH--HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPD-TCSAL--LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
..+..+...|+.++|+..+++... |++. .+..+ ...+...|++++|+++|+++.+.. +.++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 445556677999999999998884 5333 33333 557778899999999999998875 34566677777888888
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL- 172 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~- 172 (415)
++.++|++.++++.+..+ +...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|+++.
T Consensus 150 ~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999988877644 34445555555555666666999999998874 445556666666666655444333332
Q ss_pred -----------------------------------------------HHHHhc-CCCCC-HHHH----HHHHHHHHcCCC
Q 014978 173 -----------------------------------------------KEMEKR-TCRKN-RVAY----SSLLSLYTNMGY 199 (415)
Q Consensus 173 -----------------------------------------------~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~ 199 (415)
+.+... +..|. ...| .-.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 332221 11132 1222 234567788899
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHhcCcHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----TGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
+.++++.|+.+...+.+....+-..+..+|...+++++|..++..+..... +++......|..+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888665667888999999999999999999999876432 223344578999999999999999
Q ss_pred HHHHHHHhCCC-------------CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 275 SFYNRLVTKGI-------------KPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 275 ~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.+++.+.+..+ .||-. .+..++..+...|++.+|++.++++.. .-+-|......+...+...|
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 99999987322 22333 344566778899999999999999987 45668899999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ 385 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~ 385 (415)
.+.+|+..++......|.+..+.......+...|++ +..+.+...
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999888888888999999999999998 445554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-15 Score=134.79 Aligned_cols=359 Identities=14% Similarity=0.078 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+.++..+.-.|++++|.+++.++.++.| ++.+|..|...|-+.|+.+++...+-..-... +.|...|..+.....+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 456666666666999999999999999876 78899999999999999999998877665543 4577889999999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS----YSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~l~~~~~~~~~~~~a 168 (415)
.|.++.|.-+|.+..+..|++...+-.-+..|-+.|+...|...|.++.....+.|..- --.+++.+...++.+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999899999888899999999999999999999998743222222 23356667778888999
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc----------------------ChhhHH--
Q 014978 169 ATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----------------------NDAEYT-- 223 (415)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~~-- 223 (415)
.+.++.....+ -..+...++.++..+.+...++.+......+......+ +...|.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887632 23455678889999999999999998888776611111 111111
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 014978 224 --CVISSLVKLGEFEKAENIYDEWESIS--GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 299 (415)
Q Consensus 224 --~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 299 (415)
.+.-++.+....+....+.....+.+ +.-+...|..+..+|.+.|++.+|..+|..+......-+...|-.+..+|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 22234455555555555555555555 33456788899999999999999999999999865555677999999999
Q ss_pred HhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---------CHHHHHHHHHHH
Q 014978 300 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---------STEIYNSLLRTY 370 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~ 370 (415)
...|.++.|++.|..++.. .+-+...-..|...+.+.|+.++|.+.++.+...+.. .....-.....+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999882 2334456667777899999999999999997644421 123344555666
Q ss_pred HhcCCC
Q 014978 371 AKAGKM 376 (415)
Q Consensus 371 ~~~g~~ 376 (415)
...|+.
T Consensus 537 ~~~gk~ 542 (895)
T KOG2076|consen 537 FQVGKR 542 (895)
T ss_pred HHhhhH
Confidence 667765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=144.71 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
......++++.|.+.++++....+.+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.+++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHH
Confidence 333344444444444444443333333334444443 3444444444444433332 1233333444444444444444
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 168 AATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 168 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+.++++.+.... .+++...|..+...+.+.|++++|++.+++..+..+. +......++..+...|+.+++..++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 444444433211 1223334444444444444444444444444443221 23334444444444444444444444443
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
+.. +.++..+..+..+|...|+.++|..+|++..... +.|+.....+..++...|+.++|.++.+++
T Consensus 208 ~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 208 KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 332 2333444444444444444444444444444321 113344444444444444444444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-15 Score=128.56 Aligned_cols=351 Identities=16% Similarity=0.073 Sum_probs=241.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc--------HHHHHHH
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP--------YNHMLNL 89 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~ 89 (415)
.|+.+.+.|++++|+.-|+...+..|+..+-..|+-++..-|+-++..+.|.+|...-..||..- ...|+.-
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 34556789999999999998888778876655555566667899999999999976432333221 1122221
Q ss_pred HHhc--------CCcCcHHHHHHHHhhc----CCCCHhH-------------HH--------HHHHHHHhcCCHHHHHHH
Q 014978 90 YISN--------GQLDKVPQMLQELKKN----TSPDVVT-------------YN--------LWLAACASQNDKETAEKA 136 (415)
Q Consensus 90 ~~~~--------~~~~~a~~~~~~~~~~----~~~~~~~-------------~~--------~l~~~~~~~~~~~~a~~~ 136 (415)
..+. .+-..|.+..-...+. +.|+-.. +. .-..-+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 1111 1112222222221111 2222110 00 112357888999998888
Q ss_pred HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 137 FLELKKTKIDPDWISYSTLT------------------------------------SLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
+.-+.+..-+.-...-+.|. +.....|++++|.+.|.+....+-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88776553221111111111 111224788999999988886532
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
......| .+.-.+-..|+.++|++.|-++... ..-+..+...+.+.|....+..+|++++.+.... ++.|+.+..-|
T Consensus 522 sc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 2222223 3344566789999999999887654 2336667788888999999999999999887654 46678889999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH-HHHc
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK-LEEQ 339 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 339 (415)
...|-+.|+-..|.+.+-+--.. ++.+..+...|..-|....-+++++.+|+++.- ++|+..-|..++.. +.+.
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal----iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHhc
Confidence 99999999999998876655443 344778888888889999999999999999854 89999999988865 5678
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
|+++.|..+|+...+.-|.+..+...|++.+...|-.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999888999999999999888855
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-18 Score=142.86 Aligned_cols=264 Identities=15% Similarity=0.140 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhc-CcC-CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENL-PDK-MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (415)
...+..+..+.+.|++++|+++++.. ... +| ++..|..+.......++++.|++.++++...+. -++..+..++..
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 34456677888999999999999654 443 24 566677777788889999999999999998762 356677777777
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
...+++++|.+++...-+. .++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|
T Consensus 88 -~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred -ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7899999999999876544 4667788889999999999999999999987543 356778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.+.+++..+.. |.|......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|...+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999873 4467888899999999999999999999887764 346667888999999999999999999999887
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
. +.|+.....+..++...|+.++|.++..++..
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp S-TT-HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccccc
Confidence 5 55888899999999999999999999887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-14 Score=128.06 Aligned_cols=279 Identities=11% Similarity=0.061 Sum_probs=209.0
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS--TLTSLYIKMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~ 170 (415)
.|+++.|.+.+....+..+.....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 689999988877765432222333444455668899999999999998876 55554332 34678888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-------hhHHHHHHHHHhcCChHHHHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-------AEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998874 456777888889999999999999999999887654222 134444544455566677777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 244 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCC
Confidence 76543 2457778889999999999999999999999884 4455322 33444566999999999999887 345
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc--HHHHHH
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP--LIIVER 383 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a--~~~~~~ 383 (415)
-|...+..+...|.+.|++++|.+.|+.+.+..|. ...+..+...+.+.|+.+ ..++.+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677889999999999999999999999988655 455778999999999984 444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-14 Score=127.43 Aligned_cols=299 Identities=10% Similarity=0.056 Sum_probs=209.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTC-SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYI 91 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 91 (415)
.+..|+.....|+++.|.+.+....+..|++..+ -....+..+.|+++.|.+.+.+..+.. |+.. ........+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 4566777788889999999988887776665443 344566778899999999998887643 5543 3333467788
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH---HhcCCHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY-STLTSLY---IKMELPEK 167 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~---~~~~~~~~ 167 (415)
..|+++.|...++.+.+..|.+...+..+...+...|++++|.+.+..+.+.+.. +...+ ..-..++ ...+..++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999888887888888888889999999999999999988888643 33333 2222222 33333344
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhH-HHHHHHHHhcCChHHHHHHHH
Q 014978 168 AATTLKEMEKRTC---RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-TCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 168 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 243 (415)
+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+..++.....+ ..........++.+.+.+.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 4445555554421 136777888888888999999999999888886443221111 111122234577788888888
Q ss_pred HHHhccCCCCC--chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 244 EWESISGTGDP--RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 244 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 324 ~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777653 3344 556678888888999999999888543333467888888888888899999999988888765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-14 Score=112.07 Aligned_cols=287 Identities=14% Similarity=0.081 Sum_probs=133.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCC--HhHHHHHHHHHHhcCCHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD--VVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~ 134 (415)
.++++|.++|-+|.+.+ +.+..+.-+|.+.|-+.|..++|+++.+.+.++ .+.+ ..+...|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44455555555555432 222333344445555555555555555554432 0000 112334444555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555555443 222334445555555555555555555555544322221 23444555555555555555555555
Q ss_pred HHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 290 (415)
.+.+.+ .+..-..+.+.....|++..|.+.++.+.+.++..-+.+...|..+|...|+.++...++..+.+.. ++..
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 554322 2223333444555555555555555555555444344445555555555555555555555555432 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRN 354 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 354 (415)
.-..+...-....-.+.|..++.+-+. -+|+...+..++..-.. .|...+....++.|..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~----r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR----RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh----hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 222222222233334444444433333 24555555555554332 2334444445555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=130.08 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=228.5
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
+..+|+..|.++.+...........+..+|...+++++|+++|+.+.+.. ...+..+|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788999999766666666788889999999999999999999998763 123667888877766432 223333
Q ss_pred -HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 173 -KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 173 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
+.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+....++|.|...|+...... +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 233333 2456889999999999999999999999999985432 67789999888999999999999999887653 2
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
.+-..|-.+...|.+.++++.|.-.|+...+-++. +.+....+...+-+.|+.++|+.+++++... -+-|+-.-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHH
Confidence 24455666788999999999999999999985432 5667777888889999999999999999872 2234444445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t 395 (415)
-+..+...+++++|+..++++++.-|....++-.+...|.+.|+..+++...-...++.|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5666778899999999999999998888899999999999999998887777777777776554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-13 Score=114.02 Aligned_cols=372 Identities=16% Similarity=0.104 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHH--HHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--MLNLY 90 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~ 90 (415)
..+..|+..-+.|....|+..|.......| .-.+|..|..... +. +....... |.+.+...... +..++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DI----EILSILVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hH----HHHHHHHh-cCcccchHHHHHHHHHHH
Confidence 356778888889999999999988776534 4445544443332 22 22222222 22222111111 23455
Q ss_pred HhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 014978 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
....+.+++.+-...+... .+.+...-+..+.+.....+++.|+.+|+++.+... -.|..+|+.++-. +..+-.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk- 314 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH-
Confidence 5556777777777777666 555555555566666777888888888888887631 1245566665533 222211
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+.++.+-...--+--+.|...+.+-|.-.++.++|..+|++..+.++. ....|+.+.+-|....+...|..-++...+
T Consensus 315 -Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 -LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred -HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111111000223345666777777788888888888888876543 455788888888888888888888888887
Q ss_pred ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 248 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
.+ +.|-..|-.|.++|.-.+.+.=|+-.|++.... +| |...|.+|..+|.+.++.++|++.|+++.. .-..+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~ 466 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEG 466 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccch
Confidence 75 447788888888888888888888888888774 34 677888888888888888888888888877 234466
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH-HH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHVST---EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ-KV 398 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t~-~~ 398 (415)
..+..|...|-+.++.++|...|++.++. |..++ .+..-|...+.+.+++..+-.-.+......+...-- .+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence 77888888888888888888888776662 23322 333446667777788765554444444335555544 45
Q ss_pred HHHhcc
Q 014978 399 LKITSE 404 (415)
Q Consensus 399 l~~~~~ 404 (415)
++.+..
T Consensus 547 lReir~ 552 (559)
T KOG1155|consen 547 LREIRK 552 (559)
T ss_pred HHHHHH
Confidence 555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-13 Score=123.82 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=257.4
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
....|++++|.+++.+.++.. +.....|..|...|-+.|+.+++...+-......|.|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444599999999999999875 5678899999999999999999999988877778889999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
-+|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.|. .....+++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999885 666666677788999999999999999999987422222 22334566777788889999999888
Q ss_pred HHcc-cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC---------------------------CCchHHHHHH
Q 014978 211 MSLF-AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---------------------------DPRVPNILLA 262 (415)
Q Consensus 211 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~ 262 (415)
...+ -..+...++.++..+.+...++.+.............+ +..+ .-++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7732 23355578888899999999999988887766521111 1222 12233
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
++.+....+....+...+.+.++.| +...|.-+..+|...|++.+|+.+|..+.. ....-+...|..+..+|...|
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHHHHh
Confidence 3444455555555555555555333 556888999999999999999999999988 344456779999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ 385 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~ 385 (415)
.+++|.+.|+.++...|.+..+-.+|...+.+.|+. |++.++.+.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999998 466666543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-14 Score=128.32 Aligned_cols=362 Identities=14% Similarity=0.076 Sum_probs=244.5
Q ss_pred HHHHhhhhHHHHHHHHhcCcCC----CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcC
Q 014978 21 AQAQALQTRARENFFENLPDKM----RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNG 94 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 94 (415)
-+.-.|+++.+..+.+.+.... --..+|-.+.++|-..|++++|...|.+..+.. ++. ..+--+.+.+.+.|
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhc
Confidence 3445567777777666655542 123457777777777777777777777766553 333 23344567777777
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN----DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
+++.+...|+.+.+..|.+..+...|...|+..+ ..+.|..++.+..+.- +.|...|-.+...+.....+. ++.
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHH
Confidence 7777777777777777777777777777776664 4456666666665542 455666666666655544333 355
Q ss_pred HHHHHH----hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccCh------hhHHHHHHHHHhcCChHH
Q 014978 171 TLKEME----KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMND------AEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 171 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~ 237 (415)
+|..+. ..+.++.+...|.+...+...|.++.|...|+..... ...++. .+-..+.......++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 554433 3444566777888888888888888888888877654 122232 122335556667778888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|.+.|..+.+.. +.-...|..+.......+...+|...++.....+ ..++..+..+...+.....+..|.+-|....+
T Consensus 515 A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 515 AEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 888888887753 2233344444433344577888888888887643 34566677777788888888888887777766
Q ss_pred cccCCCCCHHHHHHHHHHHH------------HcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 014978 318 SVRKWVPDHRLITAAYNKLE------------EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVER 383 (415)
Q Consensus 318 ~~~~~~p~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~ 383 (415)
. ....+|..+...|...|. ..+..+.|+++|.++++..|.+..+-|-+.-.++..|++ |..+|..
T Consensus 593 ~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 K-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred h-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 4 223367777777777554 235678999999999999999999999999999999999 6889999
Q ss_pred HHhCCC
Q 014978 384 MQKDNV 389 (415)
Q Consensus 384 m~~~~~ 389 (415)
.++...
T Consensus 672 VrEa~~ 677 (1018)
T KOG2002|consen 672 VREATS 677 (1018)
T ss_pred HHHHHh
Confidence 887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-14 Score=126.95 Aligned_cols=289 Identities=17% Similarity=0.114 Sum_probs=184.8
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCC
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGF--LKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 95 (415)
+......=+..+|+..|+..+...++. .+...+.++|...+++++|.++|+.+.+... ..+...|.+.+.-+-+
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--- 402 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--- 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---
Confidence 333445556778888888766555543 4445677778888888888888887776420 1134555555543322
Q ss_pred cCcHHHHHHH-HhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+-++.++.+ +....+....+|-++..+|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+.
T Consensus 403 -~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 403 -EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred -hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 223333332 333356667777777777777777777777777777663 22566777777777777777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 254 (415)
..... +-+-..|..+.-.|.+.++++.|+-.|+++.+.++. +......+...+.+.|+.++|+.+++++...+.. |+
T Consensus 481 Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 481 ALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 76532 223344555666777777777777777777765433 4445555666667777777777777777665533 44
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..--..+..+...++.++|+..++++.+. .| +...|..+...|.+.|+.+.|+.-|..|.+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44445566666677777777777777764 34 345666667777777777777777777655
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=116.71 Aligned_cols=363 Identities=13% Similarity=0.071 Sum_probs=253.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNG 94 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 94 (415)
..|..+.++|++++|++.+.++.+..|+ +..|.....+|...|+++++.+.-.+.++.+ |+ +..+..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 4456678999999999999999999898 8889999999999999999999888887753 43 233433444555555
Q ss_pred CcCcHHH----------------------HHHH---------Hhhc---CCCCHhHHHHHHHHHHhc--------C----
Q 014978 95 QLDKVPQ----------------------MLQE---------LKKN---TSPDVVTYNLWLAACASQ--------N---- 128 (415)
Q Consensus 95 ~~~~a~~----------------------~~~~---------~~~~---~~~~~~~~~~l~~~~~~~--------~---- 128 (415)
++++|+. ++++ +.++ .-|+.....+....+... +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 5555432 2211 1211 223333333333322110 0
Q ss_pred ----------------CHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 129 ----------------DKETAEKAFLELKKT---KIDPD---------WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 129 ----------------~~~~a~~~~~~~~~~---g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
.+..|.+.+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 122222222221110 00111 11222222334446888899999999988743
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 181 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
. +...|--+..+|....+.++....|.+....++. +..+|..-.+...-.+++++|..-|++..... +-+...|..+
T Consensus 358 ~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 358 A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 3 3333777888999999999999999999887654 67788888888888999999999999998865 3367777778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccC---C--CCCHHHHHHHHHH
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---W--VPDHRLITAAYNK 335 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~p~~~~~~~l~~~ 335 (415)
..+..+.+++++++..|++..++ ++-.+..|+.....+..++++++|.+.|+.+++.... + .+.+.+.-.++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 88888899999999999999987 3346789999999999999999999999999873211 1 1112222333333
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
- -.+++..|..++++..+.+|....+|.+|...-.+.|+. |+++|+.-..
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 348999999999999999999999999999999999998 5777765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-13 Score=109.42 Aligned_cols=284 Identities=14% Similarity=0.094 Sum_probs=133.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
.|+|.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544443111 122333334444455555555555555443 333444444445555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
+.++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55554443 233344455555555555555555555555554433322 2344444444444444444444444
Q ss_pred HHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 014978 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289 (415)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 289 (415)
.-.. .+-+...-..++.-+...|+.++|.++..+..+.+..|+ -...-.+.+-++...-.+..+.-.... .-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3322 222333444444555555555555555555555444433 111112233444444444444433321 1133
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..+..|...|.+.+.|.+|...|+.+++ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555555555555555555443 45555555555555555555555555555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-12 Score=113.66 Aligned_cols=350 Identities=10% Similarity=0.042 Sum_probs=198.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
.+.+.++-|+.+|..+.+..| +...|...+..--..|..++...+|++.... ++.....|-.....+-..|++..|..
T Consensus 527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 344445555555555554433 3444555544444555555555555555543 22233334434444445566666666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
++...-+..|.+...|-..+........++.|..+|.+.... .|+...|..-++.---.++.++|.+++++..+. ++
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp 682 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP 682 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence 665555555555555655555555666666666666555543 344445544444444455556666666555554 12
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (415)
.-...|..+.+.+-+.++.+.|.+.|..-.+. .+.....|..+...=.+.|.+-.|..+++...-.+ +.+...|-..|
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~I 760 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESI 760 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHH
Confidence 22334555555555555555555555544332 11122344444444455555666666666555444 33555555566
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC
Q 014978 262 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341 (415)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 341 (415)
++-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-....+.+++ ...|+.....+...+....+
T Consensus 761 r~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-------ce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-------CEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-------ccCCchhHHHHHHHHHHHHH
Confidence 6666666666666555555543 222334555555555554443333333332 34566677778888888999
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 342 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
++.|++.|.+..+.++..-.+|..+...+.+.|.- ..+++.....
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999889999999999999965 3666666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-13 Score=109.15 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=150.7
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPD--WISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
++.++|.+.|-+|.+..+.+..+--+|.+.+.+.|..+.|+++.+.+.++. .+-+ ......|..=|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 556666666666666555555566666666666666666666666665542 1101 1233445555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh----hHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+... .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666666543 2233445566666666666666666666666554443322 35555666666666666666666666
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++...++.++.+ ..++.
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~----~~~g~ 282 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME----TNTGA 282 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----ccCCc
Confidence 554 2244444555666666666666666666666654333334555666666666666666666666655 22333
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
..-..+...-....-.+.|...+.+-....| +...+..|+..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence 3333333333333344455554444444332 23445555554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-13 Score=109.99 Aligned_cols=321 Identities=13% Similarity=0.137 Sum_probs=239.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH--hcCCcCcH-HHHHHHH-----------------
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI--SNGQLDKV-PQMLQEL----------------- 106 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~----------------- 106 (415)
+=+.|+.. ...|....+.-+|+.|.+.|++.+...-..|++.-+ .+.++--| ++.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44555543 457888999999999999998777766655554322 22221111 1111111
Q ss_pred ---hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 014978 107 ---KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 107 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 183 (415)
.+..|.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-+-. ...+++.+|.+..+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 11246778899999999999999999999999998887788999999998775533 33788999999989999
Q ss_pred HHHHHHHHHHHHcCCChHH----HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCCC--
Q 014978 184 RVAYSSLLSLYTNMGYKDE----VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK-AENIYDEWES----ISGTG-- 252 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~~-- 252 (415)
..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++.. ..+.|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998864 67788999999999999999999999999887744 4455555433 22222
Q ss_pred --CCchHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 253 --DPRVPNILLAAYINRNQLEMAESFYNRLVTK----GIKPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 253 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
+...|..-+..|.+..+.+.|.++-.-+... -+.|+. .-|..+....++....+.....|+.|+. .-.-
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP--~~y~ 430 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP--SAYF 430 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ceec
Confidence 3445566778888888999888877665432 123332 2456677788888999999999999998 6778
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 374 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 374 (415)
|+..+...++++....|.++-..+++..++..|.. ....-.-++..+++..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988855 4444555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-12 Score=106.55 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=150.7
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
|+.-.-.|+|..|+++.....+..+.+ ..|-.-+.+--+.|+.+.+-..+.+..+..-.++...+-.........|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 333345566666666655544433322 2333334444455666666666666555421233333444445555566666
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 170 (415)
.|..-.+++.+..|.+.........+|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-..
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 66666666555555556666666666666666666666666666655433322 33344443333333444344
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
.++....+ .+.++..-..++.-+.+.|+.++|.++.++..+.+.+|+ ... .-.+.+-++...-.+..+...+..
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h- 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH- 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-
Confidence 44444333 233444444555555666666666666666655554443 111 113344555555555555444332
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+-++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 223455555666666666666666666655543 45566666666666666666666666655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-13 Score=114.72 Aligned_cols=374 Identities=14% Similarity=0.120 Sum_probs=230.4
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCc------chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 23 AQALQTRARENFFENLPDKMRGP------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+...+.+|+++++-+.++.|+. ...+.+...+.+.|.++.|+..|+...+.. |+..+--.|+-++..-|+-
T Consensus 248 ~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcH
Confidence 44556666777766666654432 234444455667777777777777766643 5544433344445555666
Q ss_pred CcHHHHHHHHhhc-------------CCCCHhHHHHHHH-----HHHhcCC--HHHHHHHHHHHHhCCCCCCHH------
Q 014978 97 DKVPQMLQELKKN-------------TSPDVVTYNLWLA-----ACASQND--KETAEKAFLELKKTKIDPDWI------ 150 (415)
Q Consensus 97 ~~a~~~~~~~~~~-------------~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~g~~~~~~------ 150 (415)
++..+.|.+|... ..|+....+..+. -.-+.++ -++++-.--+++.--+.|+-.
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 6677777666432 1122222222211 1111111 111111111111111112110
Q ss_pred -------HH--------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH------------------------
Q 014978 151 -------SY--------STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL------------------------ 191 (415)
Q Consensus 151 -------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------ 191 (415)
.+ ..-..-|.+.|+++.|.+++.-..+.+-+.-...-+.|-
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 00 112345889999999999998776643221111111110
Q ss_pred ------------HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 192 ------------SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 192 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
......|++++|.+.|++.+.....-....|+ +.-.+...|++++|++.|-++... +..+..+...
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 01124578899999999987764432333344 344677889999999998876543 2336677778
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
+...|-...+...|.+++.+.... ++.|+.....|...|-+.|+-..|.+++-+--+ -++.+..+..-|...|...
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhh
Confidence 888999999999999999887764 444788899999999999999999998877544 5777899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCC--cHHHHHHHHhCCCCCCHHHHHHH-HHhccCC
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA-KAGKM--PLIIVERMQKDNVQMDAETQKVL-KITSEMP 406 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~--a~~~~~~m~~~~~~p~~~t~~~l-~~~~~~~ 406 (415)
.-++.++.+|++..-..| +..-|..++..|. +.|++ +..++... ...++-|...+..| +.+..++
T Consensus 640 qf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHHHHhcccc
Confidence 999999999998865433 3456877776665 57888 56666554 34566777777644 4444454
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-11 Score=104.21 Aligned_cols=350 Identities=12% Similarity=0.072 Sum_probs=272.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCCCCcccHHHHHHHHH
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKM----SECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 91 (415)
..-+++++.--++.|..+++++.+.-| ++.+|-+-...--.+|+.+...+++.+- ...|+..+...|-.=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344566777788888888888877755 6778877777777788888888877654 34566667777777777777
Q ss_pred hcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 92 SNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
..|..-.+..+......- ...-..||+.-...|.+.+.++-|..+|...++- .+-+...|......=-..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 777777777777665543 2334567888888888888899899999888876 344556677666666667888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
..+|+++... ++.....|-.....+-..|+...|..++....+..+. +...|..-+..-....+++.|..+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8999988877 4556777877778888889999999999998887544 6667888888888899999999999887663
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR 327 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~ 327 (415)
.|+...|.--+...--.++.++|.+++++.++. .|+. ..|..+.+.+-+.++.+.|.+.|..-.+ ..+....
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ip 720 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIP 720 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCch
Confidence 567778877777777788999999999888875 4554 4777788888888999999888887655 3444556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.|..|...=.+.|.+..|..++++.+-.+|.+...|...|++-.+.|+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 7777777777888999999999999999999999999999999999986
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-11 Score=102.49 Aligned_cols=355 Identities=10% Similarity=0.069 Sum_probs=248.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
...|++..|.++|+...+-.|+..+|.+.|..-.+-+..+.|..+|+...-. .|++.+|......=.+.|....|..+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4567777777777777777777777777777777777777777777777654 47777777777777777777777777
Q ss_pred HHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH------
Q 014978 103 LQELKKNTS---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATT------ 171 (415)
Q Consensus 103 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 171 (415)
|....+... .+...+.+.+..-.++..++.|.-+|+-.++. ++.+ ...|......=-+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 777655422 22334555555556666777777777776665 2222 23444444443444554333222
Q ss_pred --HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh-------hHHHHHHHH---HhcCChHHHH
Q 014978 172 --LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSL---VKLGEFEKAE 239 (415)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g~~~~a~ 239 (415)
++.+.+.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-.. .|..+--++ ....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444443 557778888888888889999999999999876 444221 222222222 3467899999
Q ss_pred HHHHHHHhccCCCCCchHHH----HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 240 NIYDEWESISGTGDPRVPNI----LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
++++...+. ++....||.- ....-.++.++..|.+++...+. ..|-..+|...|..-.+.++++.+..++++-
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999988874 3444555543 34444567889999999988775 4678889999999889999999999999999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCC
Q 014978 316 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 316 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~ 388 (415)
++ --+.+..+|......=...|+.+.|..+|+.+++.... |...|.+.|..-...|.+ +.++++++.+..
T Consensus 464 le---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 464 LE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred Hh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 87 22446788888888888899999999999999887655 557899999988888888 577888777643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-13 Score=123.97 Aligned_cols=265 Identities=14% Similarity=0.019 Sum_probs=186.9
Q ss_pred CCcchHHHHHHHHH-----hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---------cCCcCcHHHHHHHHhh
Q 014978 43 RGPDTCSALLHSYV-----QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS---------NGQLDKVPQMLQELKK 108 (415)
Q Consensus 43 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 108 (415)
.+..+|...+++-. ..+++++|.+.|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 46677766666532 2356899999999998865 2244556555554432 2347889999999988
Q ss_pred cCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH
Q 014978 109 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAY 187 (415)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 187 (415)
..|.+..++..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.. |+ ...+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 888899999999999999999999999999999885 4456678888999999999999999999998864 33 3333
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34455566688999999999998765422244456777788889999999999998876542 22344455666677777
Q ss_pred CcHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 268 NQLEMAESFYNRLVTK-GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
| +.|...++.+.+. ...|....+..+ .+.-.|+.+.+..+ +++.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 7 4777777776542 112322333333 34445666666555 76665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-12 Score=105.40 Aligned_cols=312 Identities=16% Similarity=0.144 Sum_probs=213.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCC---CCHhHHHHHHHHHHhc
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS---PDVVTYNLWLAACASQ 127 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 127 (415)
+..++-.....+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+..| .|..+|..++-+--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667888888888888888765555555555556667888888888888887743 3555666655443222
Q ss_pred CCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
.+. .++.+-. ..+ +-.+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++.
T Consensus 313 skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 1221111 111 3345677788888888888888888888888764 44567788888888888888888888
Q ss_pred HHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 014978 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286 (415)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 286 (415)
|+..++..+. |-..|..+.++|.-.+...-|.-.|++..+-. +.|...|.+|..+|.+.+++++|.+.|......| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 8888876443 66788888888888888888888888887764 4578888888888888888888888888887765 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc--ccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
.+...+..+...|-+.++..+|...|.+-++. ..+...+ .....-|..-+.+.+++++|..........+ ....-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~-~e~ee 542 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE-TECEE 542 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC-chHHH
Confidence 35577888888888888888888888776651 1222222 2222334555777888888887776666552 22233
Q ss_pred HHHHHHHHHh
Q 014978 363 YNSLLRTYAK 372 (415)
Q Consensus 363 ~~~l~~~~~~ 372 (415)
-+.|++.+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4555555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=110.47 Aligned_cols=232 Identities=16% Similarity=0.202 Sum_probs=199.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
|..--+-+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-++|.+..+++.|+.++.+-.+..+ .++....-+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHH
Confidence 3344467899999999999999999998876 57788899999999999999999999999888632 24444556778
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 307 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 307 (415)
.+...++.++|.++++...+.. +.++.....+...|.-.++++.|+++++++++.|+. ++..|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8889999999999999998875 557888888888999999999999999999999975 88999999999999999999
Q ss_pred HHHHHHHhHhcccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVER 383 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~ 383 (415)
++..|.++.+. .-.|+ ...|..+.......|++..|.+.|+.....++.....+|.|.-.-.+.|+. |..++..
T Consensus 377 ~L~sf~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999983 34444 467888988889999999999999999999999999999999999999998 5666665
Q ss_pred HHh
Q 014978 384 MQK 386 (415)
Q Consensus 384 m~~ 386 (415)
-..
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-11 Score=108.94 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=209.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH-HHHHhc-
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML-NLYISN- 93 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~- 93 (415)
-....+...|++++|++.++.-...-+|.. ........+.+.|+.++|..+|..+++++ |+...|...+ .+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 334466889999999999998777666654 45677889999999999999999999987 6655554444 444222
Q ss_pred ----CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 94 ----GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 94 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+.+...++|+++....|.....-..-+.. .....+ ..+..++..+...|+| .+|+.+-..|.......-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 245667888888877654333222222222 222233 3566677778888864 4566666667655555555
Q ss_pred HHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 169 ATTLKEMEKR----T----------CRKNRV--AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 169 ~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
.+++...... + -+|+.. ++..+...|...|++++|++++++.++..+. ....|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555555432 1 134443 4466678888999999999999999986432 356788889999999
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHH--------HHHHHHHHhcCC
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW--------ELLTWGYLKKGQ 304 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~~~ 304 (415)
|++.+|...++.....+. .|...-+-.+..+.+.|++++|.+++......+..|....+ .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988763 37777778889999999999999999999876654422222 244578899999
Q ss_pred HHHHHHHHHHhHhc
Q 014978 305 MEKVLECFKKAIGS 318 (415)
Q Consensus 305 ~~~a~~~~~~~~~~ 318 (415)
+..|++.|....+.
T Consensus 321 ~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 321 YGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777663
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=107.37 Aligned_cols=380 Identities=12% Similarity=0.039 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL----KCPLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 90 (415)
++..+-.+....+.++|...|..+.. .|+..|..+...-.. ..-.+.+.|+.+...+.. .+......+....
T Consensus 144 c~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 144 CYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred eeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 44555566667778888888888776 355444443222111 112233333333332211 1122222222211
Q ss_pred HhcCCcCcHHHHHH-HHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 91 ISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 91 ~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
.....-+.....-. .-......+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-.
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHH
Confidence 11111111111111 0011134566667777788888899999999999888774 666667777777888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
.+=.++.+. .|....+|-++.--|...|..++|.++|.+....+.. =...|.....+|...|.-++|...+....+.-
T Consensus 299 ~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 299 LLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 888888876 3556778888888888889999999999887664322 23468888888888999999988888776641
Q ss_pred CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC----C
Q 014978 250 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV----P 324 (415)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----p 324 (415)
+....-+-.+.--|.+.++.+.|.++|.+.... .| |+...+-+.-.....+.+.+|..+|+..+....... .
T Consensus 377 -~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 -PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred -cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 222233344556677889999999999888764 34 667788887777788889999999988874211111 2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH-HHHHHhc
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ-KVLKITS 403 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~~~~p~~~t~-~~l~~~~ 403 (415)
-..+++.|..+|.+.+.+++|+..+++.....+.+..++.++.-.|...|+++.++-.--+...+.|+..+. .+|..+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345678888899999999999999999999888888999999999999999866665556777888988766 5665443
Q ss_pred c
Q 014978 404 E 404 (415)
Q Consensus 404 ~ 404 (415)
+
T Consensus 534 e 534 (611)
T KOG1173|consen 534 E 534 (611)
T ss_pred H
Confidence 3
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-12 Score=116.56 Aligned_cols=184 Identities=12% Similarity=0.024 Sum_probs=92.3
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+++|...|++..+..|.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 3455566665555555555555555444332 123455666666555553 334445555555555556666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+|...|+++.+.+ +.+...+..+..++...|++++|+..+++..+..+. +...+..++..+...|++++|...++++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6666666555542 233444555555555566666666666665554322 11122222333444555555655555554
Q ss_pred hccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+...+.+...+..+..++...|+.++|...+.++..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 432122233344455555555666666655555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=105.88 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=188.5
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.-.|.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 334444555667788888888888877764 5666677777777777787777777777777777778888888888887
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
-.|+.++|.++|.+....+ +.=...|-...+.|.-.|..++|...+..+.+. ++-..-.+--+.--|.+.+....|.+
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 7888888888887766542 112346777777788888888888777766553 11121122223445666777888888
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc--CCC----CCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS--GTG----DPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
+|.+.....+ -|+...+-+.-.....+.+.+|..+|+.....- ..+ -..+++.|.++|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 8877766432 255566666655566777888888777655211 011 223467777778888888888888887
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 280 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+... +.+..++.++.-.|...|+++.|++.|.+++- +.|+-.+...++..
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKL 531 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHH
Confidence 77653 23667777777777778888888888887765 66776666655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-12 Score=105.26 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=100.9
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..+.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666655543 2234445555555555666666666666555544445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
..|++++|...+++..+... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666655554321 1122334444555555555555555555555432 223344444555555555555555
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
..+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555443 1222333334444444555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=108.57 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
..+.|-....--+....-.+..-.+.....+. |-.--+.+.++|.+.|-+.+|.+.++.-++. .|-+.||..|
T Consensus 185 Fey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllL 262 (478)
T KOG1129|consen 185 FEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLL 262 (478)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHH
Confidence 33444444444444444444444444444322 1112257888999999999999999888775 4677788888
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
-..|.+-.++..|+.++.+-....|.|+.......+++-..++.++|.++|+...+.. +.++.....+...|.-.++++
T Consensus 263 skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChH
Confidence 8999999999999999999888888888888888999999999999999999988773 456667777788888889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh--hhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
-|+.+++++.+.|+. +...|+.+.-+|.-.++++-++..|.+....-..|+. .+|..+.......||+..|.+.|+.
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 999999999999854 7788888888888889999999999988876554543 3577788888889999999999998
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
....+ ..+...+|.|.-.-.+.|+++.|..+++.....
T Consensus 421 aL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88765 446778888888888999999999999988764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-12 Score=104.25 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=111.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555442 2334455555556666666666666666555542 2334455555555
Q ss_pred HHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655432111 22344445555666666666666666665543 2234455566666666666666
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 273 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|...+++.... ...+...+..+...+...|+.++|..+++.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666554 122444555555666666666666666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-09 Score=92.67 Aligned_cols=350 Identities=11% Similarity=0.090 Sum_probs=206.2
Q ss_pred HHhhhhHHHHHHHHhcCcCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHH
Q 014978 23 AQALQTRARENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 100 (415)
...+++..|..+|+.+.... .+...|-..+.+-.++..+..|..+++.....- |- ...|--.+..=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHH
Confidence 45566666666666655542 344555555555555555555555555554431 21 112222233333345555555
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM----- 175 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----- 175 (415)
++|+...+ ..|+..+|++.+..-.+.+.++.|..+|++.+-. .|++.+|-.....=.+.|....|..+|+..
T Consensus 162 qiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 162 QIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55555333 2455555555555555555555555555555432 355555544444444445544444444444
Q ss_pred --------------------------------HhcCCCCC--HHHHHHHHHHHHcCCChHHHHHH--------HHHHHHc
Q 014978 176 --------------------------------EKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRI--------WKKMMSL 213 (415)
Q Consensus 176 --------------------------------~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~ 213 (415)
..+ ++.+ ...|..+...=-+-|+....... |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 333 1212 22233333222233433322221 2333333
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc-------hHHHH---HHHHHhcCcHHHHHHHHHHHHhC
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-------VPNIL---LAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
+ +-|-.+|--.++.-...|+.+...++|+..... ++|-.. +|..+ +..-....+.+.+.++|+..++
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 2 225556777777777889999999999988765 344221 11111 1122346788899999998887
Q ss_pred CCCC-CHhHHHHHHHH----HHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 284 GIKP-CYTTWELLTWG----YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 284 ~~~p-~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+.| ...||.-+--. -.++.++..|.+++..++ |.-|...+|...|..=.+.++++....++++.++.+|.
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 344 33455544333 357889999999999885 57899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 359 STEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
+-.+|......-...|+. +.++|+--..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 989999888888888887 4667765544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-10 Score=96.08 Aligned_cols=299 Identities=12% Similarity=0.076 Sum_probs=223.3
Q ss_pred cCcHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
.++...+...+-.+... -++.|+.....+..++...|+..+|+..|++.....|.++.........+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444444444433322 24456777788888888999999999999887766666677777777777888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
...+.... +-+...|-.-+......++++.|+.+-++.++.+ +.+...|-.-...+...+++++|.-.|+..+...+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap- 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP- 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-
Confidence 87776552 2344445555556667788999999988888764 34566676667888899999999999999887543
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH-HHHH-hcCcHHHHHHHHHHHHhCCCCCCHh-HHH
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAYI-NRNQLEMAESFYNRLVTKGIKPCYT-TWE 293 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~-~~~ 293 (415)
-+...|..|+.+|...|.+.+|..+-+...+. ++.+..+...+. ..+. ...--++|.++++..+.. .|+.. ..+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 36778999999999999999998887776654 244555555442 2222 233457888998887764 56653 566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 366 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 366 (415)
.+...|...|...+++.++++.+. ..||....+.|.+.+...+.+++|...|....+.+|.+..+...|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 777888899999999999999876 689999999999999999999999999999999999876655444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-10 Score=104.07 Aligned_cols=293 Identities=14% Similarity=0.048 Sum_probs=213.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC---
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN--- 128 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 128 (415)
...+...|++++|++.+++-... +.............+.+.|+.++|..+|..+.+..|.|...|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 45667889999999999886554 33345556677789999999999999999999999999999999988874333
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 129 --DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP-EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 129 --~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
+.+....+|+++... -|.......+.-.+.....+ ..+..++..+..+|+|+ +|+.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 577888899988766 34444443333333332233 34556667777888653 56666666665555555555
Q ss_pred HHHHHHHc----c----------cccCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCc
Q 014978 206 IWKKMMSL----F----------AKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269 (415)
Q Consensus 206 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 269 (415)
++...... + -+|+. .++..+...|-..|++++|...+++..++. +..+..|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 55555432 1 12333 245667788889999999999999999874 3347788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH------H--HHHHHHHHHHcCC
Q 014978 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR------L--ITAAYNKLEEQGD 341 (415)
Q Consensus 270 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~------~--~~~l~~~~~~~g~ 341 (415)
+.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++..-.+ .+..|-.. . ......+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr--~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR--EDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC--CCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999987543 666777788888999999999999988776 33333222 1 2445678999999
Q ss_pred hhHHHHHHHHHHH
Q 014978 342 IDGAEHLLVTLRN 354 (415)
Q Consensus 342 ~~~a~~~~~~~~~ 354 (415)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-10 Score=96.17 Aligned_cols=302 Identities=15% Similarity=0.064 Sum_probs=206.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
+-....-|.++|++++|++.|.+.++.. |+ +..|.....+|...|+|+++.+.-.+..+..|.-+..+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 3445667889999999999999999864 77 78889999999999999999999888887767777788888888888
Q ss_pred cCCHHHHHHHH----------------------HH---------HHhCC--CCCCHHHHHHHHHHHHhc--------CC-
Q 014978 127 QNDKETAEKAF----------------------LE---------LKKTK--IDPDWISYSTLTSLYIKM--------EL- 164 (415)
Q Consensus 127 ~~~~~~a~~~~----------------------~~---------~~~~g--~~~~~~~~~~l~~~~~~~--------~~- 164 (415)
.|++++|+.=. +. +.+.+ +-|+.....+....+-.. ++
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 88887765321 11 11011 123333322222222110 00
Q ss_pred ----HHHHHHHHHH------------HHhc----CCCC--C---------HHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 165 ----PEKAATTLKE------------MEKR----TCRK--N---------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 165 ----~~~a~~~~~~------------~~~~----~~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++.+.+.. +.+. -..+ + ..+.......+.-.|+.-.|.+-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 1111111111 1110 0001 1 111222222334557778888888888876
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTW 292 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 292 (415)
...++. .|-.+..+|....+.++.+..|+...+.+ +-++.+|-.-.+.+.-.+++++|..=|++.+.. .| +...|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHH
Confidence 554332 36667778888888888899998888876 347778888888888888889999888888875 34 44566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 293 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 293 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..+..+..+.+.+++++..|++... .++.-++.|+.....+..+++++.|.+.|+..++..+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 6666667788889999999999887 57777788888888888899999999999888876655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-09 Score=92.65 Aligned_cols=363 Identities=14% Similarity=0.085 Sum_probs=207.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc
Q 014978 4 RRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 82 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (415)
..+.|...-...+.....+...|++++|.+....+....| +..++..=+-++.+.++|++|+.+.+.-... ..+...
T Consensus 4 ~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~ 81 (652)
T KOG2376|consen 4 EKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSF 81 (652)
T ss_pred cccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchh
Confidence 3444555545677777788999999999999999998877 5677777778889999999999666543211 111111
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP--------------- 147 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--------------- 147 (415)
+-.-..+..+.+..++|+..++.. .+.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 111123344678888888888733 24455566777788888888888888888886553220
Q ss_pred ------------CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcC-------------CCCCHHH-HHHHHHHHHcCC
Q 014978 148 ------------DWISYSTL---TSLYIKMELPEKAATTLKEMEKRT-------------CRKNRVA-YSSLLSLYTNMG 198 (415)
Q Consensus 148 ------------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~-~~~l~~~~~~~~ 198 (415)
...+|..+ .-.+...|++.+|+++++...+.+ +.....+ -.-+..++-..|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 01123222 234556788888888888873211 0001111 123445566778
Q ss_pred ChHHHHHHHHHHHHcccccChhh----HHHHH------------------------------------------------
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAE----YTCVI------------------------------------------------ 226 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~------------------------------------------------ 226 (415)
+.++|..+|...++.... |... -|.++
T Consensus 239 qt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777665332 2211 01111
Q ss_pred -----------------------------HHHH--hcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 227 -----------------------------SSLV--KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 227 -----------------------------~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
..+. +......+..++....+........+.-.++......|+++.|.+
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 0000 000111222222222221111112233344555666777777777
Q ss_pred HHH--------HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH----HHHHHHcCChh
Q 014978 276 FYN--------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA----YNKLEEQGDID 343 (415)
Q Consensus 276 ~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~ 343 (415)
++. .+.+.+..| .+...+...+.+.++.+.|..++.+++.....-.+.......+ ...-.+.|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 777 444433333 3344455556666666666666666555322223333333332 23334568888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 344 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+|...++++.+.++.+..+...++.+|++..
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 8888888888887878888888888887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-10 Score=87.88 Aligned_cols=200 Identities=16% Similarity=0.039 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
.+...|.-.|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+..|.+..+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 345567778888888888888888888876 4456678888888888888888888888888877888888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 126 SQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
..|++++|.+.|++..... ...-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887653 22334578888888888888888888888888764 334455667778888888888888
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.+++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877765 67777777788888888888877766666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=89.55 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.-+.+++.+.+.|++..|..-++++.+..| +..+|..+...|-+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 345677889999999999999999999877 46789999999999999999999999999875 4577889999999999
Q ss_pred cCCcCcHHHHHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
.|++++|...|++.... .+.-..+|..+.-+..+.|+++.|...|++.++.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999998876 66667899999999999999999999999999884 4455678889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.++.....+. ++..+.-..|+.-...|+.+.+-++=..+...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988864 78888878888888899999988887777664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-09 Score=93.89 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..|+.++.....+++...+++.+.+....| .+.+.....-.+...|+-++|........+.+ ..+.++|+.+.-.+-.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 456777777777777777777777776544 34555555555566677777777777666544 3456677777666666
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
..++++|++.|.......+.|...|.-+.-.-++.++++.....-.+..+.. +.....|..++.++.-.|++..|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666666666655566666665555555555441 222334555555555556666666665
Q ss_pred HHHHhc
Q 014978 173 KEMEKR 178 (415)
Q Consensus 173 ~~~~~~ 178 (415)
++..+.
T Consensus 167 ~ef~~t 172 (700)
T KOG1156|consen 167 EEFEKT 172 (700)
T ss_pred HHHHHh
Confidence 555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=102.59 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=177.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-----K-IDPDWI-SYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
.|.-..+...+...|...|+++.|+.++++..+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444557777999999999999999999988755 2 133333 3345778899999999999999988752
Q ss_pred -C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----ccc-cChh-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 179 -T--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FAK-MNDA-EYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 179 -~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
| .+.-..+++.|..+|.+.|++++|...++...+. +.. |... .++.+...++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 1112456778888999999999998888876543 111 1222 3667777888999999999998865542
Q ss_pred ---cCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 249 ---SGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK-----G-IKP-CYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 249 ---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
-+.++ ..+++.|...|...|++++|.++++..+.. | ..+ ....++.|...|.+.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 347888999999999999999999887642 1 122 234677888889999999989888887
Q ss_pred hHhcccCCC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 315 AIGSVRKWV---PD-HRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 315 ~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
......... |+ ..+|..|..+|.+.|+++.|.++.+.+..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 655321222 23 36788899999999999999999887763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-11 Score=108.41 Aligned_cols=253 Identities=11% Similarity=0.120 Sum_probs=142.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014978 67 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 145 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 145 (415)
++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-. .+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566666666666666666666666666665 66666544 5556666666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCCCHHH--------------HHHHHHHHHcCCChHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEK---AATTLKEME----KRTCRKNRVA--------------YSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~ 204 (415)
.|.+.||..|..+|...||+.. +.+.+..+. ..|+.....- -...+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666543 111111111 1121100100 111222223334444444
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 284 (415)
+++..+-..... . .+..+++-+.. +....+++........-.|++.++...++.-...|+.+.|..++.+|.+.|
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 444333211100 0 11112332222 223333444433332225788888888888888888888888888888888
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCC
Q 014978 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 341 (415)
Q Consensus 285 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 341 (415)
+..+.+.|..++-+ .++...++.+++.|.. .|+.|+..|+...+..+..+|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe--~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQE--KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHH--hcCCCCcchhHHHHHhhhcchh
Confidence 87777777777766 6777777788888877 6888888888777766666444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-10 Score=95.84 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=150.4
Q ss_pred cCcHHHHHHHHHHHHhcC-CCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 58 NKKSAEAEALMEKMSECG-FLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+..|.+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 356677777777777532 1121 2446677777888888888888888888777788888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 135 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
..|++..+.. +.+..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888763 3345677778888888888888888888888753 433222222233445677888888887655432
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---cC---CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 014978 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI---SG---TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 288 (415)
.|+...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|...|++..+.++ ||
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 2232222 22 22345555443 244444321 11 11345788888888889999999999988887643 35
Q ss_pred HhHHHH
Q 014978 289 YTTWEL 294 (415)
Q Consensus 289 ~~~~~~ 294 (415)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=78.04 Aligned_cols=49 Identities=39% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=77.33 Aligned_cols=50 Identities=34% Similarity=0.455 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=93.16 Aligned_cols=227 Identities=11% Similarity=-0.029 Sum_probs=159.9
Q ss_pred cCCcCcHHHHHHHHhhcCC--C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTS--P--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+..+.++.-+.++....+ | ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777765422 2 24568888889999999999999999999874 45678999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
...|++..+.. +-+..+|..+..++...|++++|++.+++..+..+ +..........+...++.++|...+......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998863 33567788888899999999999999999988643 3322222222345577899999999775543
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh---CCC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT---KGI--KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 322 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 322 (415)
. .++...+ .+.. ...|+...+ ..+..+.+ ..+ .| ....|..+...+.+.|++++|...|+++++ .-
T Consensus 195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~---~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA---NN 266 (296)
T ss_pred C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC
Confidence 2 3332222 2333 335555444 34444432 111 11 335788999999999999999999999988 23
Q ss_pred CCCHHHHHH
Q 014978 323 VPDHRLITA 331 (415)
Q Consensus 323 ~p~~~~~~~ 331 (415)
+||..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 446555444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-09 Score=91.06 Aligned_cols=305 Identities=12% Similarity=0.045 Sum_probs=151.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
..|..+...+...|+++.+.+.+....+.. +++... .......+...|++++|.+.+++..+..|.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 445555555556666666655555544432 122211 1112233455667777777777666555555544442 22
Q ss_pred HHH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 014978 123 ACA----SQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 123 ~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (415)
.+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222 233344444444331 111222 2333445556667777777777777776653 33455566666777777
Q ss_pred CChHHHHHHHHHHHHcccc-cCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-CchH-H--HHHHHHHhcCcH
Q 014978 198 GYKDEVLRIWKKMMSLFAK-MND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-PRVP-N--ILLAAYINRNQL 270 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~ 270 (415)
|++++|...+++....... |+. ..|..+...+...|++++|..++++.......+. .... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 7777777777766654321 121 1244566666777777777777777643221111 1111 1 222222333433
Q ss_pred HHHHHH--H-HHHHhCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccC---CCC---CHHHHHHHHHHHHHcC
Q 014978 271 EMAESF--Y-NRLVTKGI-KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVP---DHRLITAAYNKLEEQG 340 (415)
Q Consensus 271 ~~a~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p---~~~~~~~l~~~~~~~g 340 (415)
..+.++ . ........ ............++...|+.+.|...+..+...... ... ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 322222 1 11111100 001112224555667778888888888777652111 000 1112222233456788
Q ss_pred ChhHHHHHHHHHHHc
Q 014978 341 DIDGAEHLLVTLRNA 355 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~ 355 (415)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=91.44 Aligned_cols=185 Identities=13% Similarity=0.018 Sum_probs=75.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH-HHHHHhcCCcCcHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM-LNLYISNGQLDKVP 100 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 100 (415)
.+..++.+|++++..-.+..| +....+.|..+|....++..|-+.++++-.. .|...-|... ...+-+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 444455555555544444433 3344444445555555555555555555442 2332222221 23334444555555
Q ss_pred HHHHHHhhcCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 101 QMLQELKKNTSPDVV--TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+...|... ++.. +...-.......+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+-
T Consensus 99 rV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 555444321 1111 11111112223444444444444443221 2233333333344445555555555444433
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
+--.....|+..+ +..+.|+++.|++...+++++|+
T Consensus 174 sGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 174 SGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 2222233343222 22333445555555555544444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=88.05 Aligned_cols=295 Identities=13% Similarity=0.037 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcC--CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDK--MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (415)
....+.++.-.++...|...|-.+... -| |......+...+...|+.++|+..|++....+ |+ ........-.+
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHH
Confidence 344444555555555555554443333 23 67788899999999999999999999988754 43 33344444556
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
.+.|+.+....+...+..........|-.-+......++++.|+.+-++.++.. +.+...|-.-...+...+++++|.-
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHH
Confidence 778999888888877765555566667666777778899999999999988774 4455677777788899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH-HHH-HhcCChHHHHHHHHHHHhc
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI-SSL-VKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~ 248 (415)
.|+...... +-+...|..++..|...|.+.+|..+-+...+. .+.+..+...+. ..| ....--++|.+++++..+.
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 999988762 457889999999999999999998887776654 233555655542 222 2233457899999887765
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
. +.-....+.+...+...|..+.+..+++..+.. .||....+.|.+.+...+.+.+|.+.|..+++
T Consensus 434 ~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 N-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred C-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3 223446677888889999999999999998874 68999999999999999999999999999987
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-10 Score=100.82 Aligned_cols=232 Identities=19% Similarity=0.220 Sum_probs=130.5
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhc-------CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKN-------TSPDVVT-YNLWLAACASQNDKETAEKAFLELKKT-----K--IDPDWI 150 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~ 150 (415)
+...|...|++++|..+++...+. ..|.+.+ .+.+...|...+++.+|..+|+++... | .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444455555555555555543322 1222222 234556666666666666666666432 2 111123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccC--
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMN-- 218 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 218 (415)
+++.|..+|.+.|++++|...++...+. | ..|.+ ..++.++..+...+++++|..++....+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 5566666677777776666666554321 1 11222 22455666667777777777776655432 11222
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhcc----C---CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh----CCC
Q 014978 219 --DAEYTCVISSLVKLGEFEKAENIYDEWESIS----G---TGDPRVPNILLAAYINRNQLEMAESFYNRLVT----KGI 285 (415)
Q Consensus 219 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~ 285 (415)
..+++.+...|...|++++|.++++++.... . .-....++.|...|.+.+++.+|.++|.+... .|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2357777777777777777777777665421 1 11233556677777777777777777765432 222
Q ss_pred -CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 286 -KPC-YTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 286 -~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|+ ..+|..|...|...|++++|+++......
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 24677777888888888888877776653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=105.05 Aligned_cols=258 Identities=15% Similarity=0.158 Sum_probs=140.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
+.|+..||..+|.-|+..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4555555555555555555555555 5555554444445555555555555555544433 344555555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcC
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 268 (415)
+..+|...||... |+...+ ....+...+...|.-..-..++..+.-. +.-|| -...+......|
T Consensus 89 Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd---a~n~illlv~eg 153 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD---AENAILLLVLEG 153 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh---HHHHHHHHHHHH
Confidence 5555555555543 222111 1112222333333333333333322111 11111 122333444556
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
.++.+.+++..+...... . ++..+++-+..... -..++....... .+ .|++.++..++.+-..+|+.+.|..+
T Consensus 154 lwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl-~e-~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSL-VE-APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHh-hc-CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 666666665544321110 1 11112444333322 233333333331 23 79999999999999999999999999
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhcc
Q 014978 349 LVTLRNAGHV-STEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITSE 404 (415)
Q Consensus 349 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~~ 404 (415)
+.+|++.|.+ ..+-|-.|+-+ .++. ...++..|+..|+.|+.+|+ ..+..+.+
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9999999988 55555555544 4443 57889999999999999999 45555555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-08 Score=89.98 Aligned_cols=298 Identities=9% Similarity=-0.010 Sum_probs=188.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-Ccch---HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDT---CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+...|+.+.+.+.+.......| +... .......+...|++++|.+.+++..+.. +.+...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHH
Confidence 334455666778887777776555433 3222 2233445677899999999999988764 334434442 222222
Q ss_pred ----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 93 ----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 93 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
.+....+.+.+.......+........+..++...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 4455555555554222245555566677889999999999999999999885 55667888999999999999999
Q ss_pred HHHHHHHHhcCC-CCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC-hhhH-H--HHHHHHHhcCChHHHHHH
Q 014978 169 ATTLKEMEKRTC-RKNR--VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEY-T--CVISSLVKLGEFEKAENI 241 (415)
Q Consensus 169 ~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~~~a~~~ 241 (415)
...+++...... .|+. ..|..+...+...|++++|..++++.......+. .... + .++.-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 999999887531 1232 3455788889999999999999999865432112 1111 1 223333444544333333
Q ss_pred --HHHHHhccCCCCCchH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--------CHhHHHHHHHHHHhcCCHHHHH
Q 014978 242 --YDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP--------CYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 242 --~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
+........+.....+ ...+.++...|+.+.|...++.+......+ ..........++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 2111111111111222 245667778899999999999886532110 1112223334566899999999
Q ss_pred HHHHHhHh
Q 014978 310 ECFKKAIG 317 (415)
Q Consensus 310 ~~~~~~~~ 317 (415)
+.+..++.
T Consensus 328 ~~L~~al~ 335 (355)
T cd05804 328 ELLGPVRD 335 (355)
T ss_pred HHHHHHHH
Confidence 99999876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-08 Score=87.71 Aligned_cols=347 Identities=14% Similarity=0.021 Sum_probs=216.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhc
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISN 93 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 93 (415)
...+.+....|+++.|+..|..+....| +...|+.-..+|...|++++|++=-.+.++. .|+ +..|.....++.-.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 3567788899999999999999888754 7788999999999999999999877777765 355 56788899999999
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-------------------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK------------------------------------------- 130 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------- 130 (415)
|++++|+..|.+-.+..|.|...++.+..++......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999998877787888888777776221000
Q ss_pred -----HHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 014978 131 -----ETAEKAFLELK--------KTK-------IDP------------D----------WISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 131 -----~~a~~~~~~~~--------~~g-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a 168 (415)
....+..-.+. ..| ..| | ..-...+.+...+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00000000000 000 001 0 01123455555666667777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH-------HHHHHHHhcCChHHHHHH
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT-------CVISSLVKLGEFEKAENI 241 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~ 241 (415)
.+.+....... -+..-++....+|...|.+.++...-+...+.|-. ...-|+ .+..++.+.++++.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777666653 34444555666777777777766666665555432 111222 233355556777777777
Q ss_pred HHHHHhccCCCCCchH-------------------------HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 014978 242 YDEWESISGTGDPRVP-------------------------NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 296 (415)
Q Consensus 242 ~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 296 (415)
|.+.......|+...- ..-...+.+.|++..|.+.|.+++... +-|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 7765543333322110 011344556677777777777777664 22566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
-+|.+.|.+..|+.-.+..++. -++....|..=..++....+++.|.+.|++..+.++.+......+.++..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 7777777777777777776661 22233445444555555667777777777777777665555444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-07 Score=81.99 Aligned_cols=360 Identities=11% Similarity=0.092 Sum_probs=192.8
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 21 AQAQALQTRARENFFENLPDKMR---GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
...++|++..-...|+.+...-| ...+|...+......+-++.+..+++..++.. | ..-+-.+..++..++++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchH
Confidence 44678888888888888776644 45678888888888888888888888887742 3 33566677777888888
Q ss_pred cHHHHHHHHhhc-------CCCCHhH--------------------------------------HHHHHHHHHhcCCHHH
Q 014978 98 KVPQMLQELKKN-------TSPDVVT--------------------------------------YNLWLAACASQNDKET 132 (415)
Q Consensus 98 ~a~~~~~~~~~~-------~~~~~~~--------------------------------------~~~l~~~~~~~~~~~~ 132 (415)
+|.+.+..+... .+.+-.. |.+|++.|.+.|.++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 887777654321 2222222 5555555666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhcC-----------
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMEL----------------------PEKAATTLKEMEKRT----------- 179 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~----------- 179 (415)
|..+|++.... ..+..-|..+.+.|..-.. ++-....|+.+...+
T Consensus 267 arDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 267 ARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 66666555544 2334444444444433110 111122222222110
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
-+.++..|..-.. ...|+..+....|.++.+. +.|.. ..|..+...|...|+.+.|..+|++..+...+.-
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 0112222222222 2234555556666665554 22221 2466667777777777777777777665432211
Q ss_pred ---CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC----------C-------CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 254 ---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK----------P-------CYTTWELLTWGYLKKGQMEKVLECFK 313 (415)
Q Consensus 254 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~ 313 (415)
..+|..-...-.++.+++.|.++.+......-. | +...|...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 123333344444556666777766665432111 0 11223334444445566667777777
Q ss_pred HhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhc-C-CC---cHHHHHHHHh
Q 014978 314 KAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--EIYNSLLRTYAKA-G-KM---PLIIVERMQK 386 (415)
Q Consensus 314 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-g-~~---a~~~~~~m~~ 386 (415)
++++. .+. ++.........+..+.-++++.+++++-+..-+.|. ..|+..+.-+.+. | .- +..+|+...+
T Consensus 502 riidL--ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 502 RIIDL--RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHH--hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 77662 222 222222222234444556677777766655444432 6777777776652 2 11 4667777776
Q ss_pred CCCCCCH
Q 014978 387 DNVQMDA 393 (415)
Q Consensus 387 ~~~~p~~ 393 (415)
|.+|..
T Consensus 579 -~Cpp~~ 584 (835)
T KOG2047|consen 579 -GCPPEH 584 (835)
T ss_pred -cCCHHH
Confidence 555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-10 Score=97.08 Aligned_cols=232 Identities=13% Similarity=0.083 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
|.-.|..|..+.+.|++.+|.-.|+.+....| +..+|..|......+++-..|+..+++..+.+ +.+......|.-.|
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 34578999999999999999999999988877 78999999999999999999999999999875 34667777788889
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHH-------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhc
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWL-------AACASQNDKETAEKAFLELK-KTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...|.-..|+..|+......++-...-..-. ........+....++|-++. ..+..+|+.++..|.-.|.-.
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 9999999999999887543222111000000 11112223344455555544 444447788888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-hhHHHHHHHHHhcCChHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
|++++|...|+.+.... |-|...||.|...++...+.++|+..|.+.++. .|+- .+...|.-+|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 89999999998888763 456778898888888888889999999888884 4443 2444455578888888888887
Q ss_pred HHHHHh
Q 014978 242 YDEWES 247 (415)
Q Consensus 242 ~~~~~~ 247 (415)
|-.+..
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-07 Score=80.32 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=184.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcC----------------------cHHHHHHHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNK----------------------KSAEAEALMEKMSE 73 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~ 73 (415)
..++--|.+.|.++.|..+|++.........-|..+.++|++.. +++-...-|+.+..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 34444567888888888888887765334444444444443211 11222223333332
Q ss_pred cC-----------CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH------hHHHHHHHHHHhcCCHHHHHHH
Q 014978 74 CG-----------FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV------VTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 74 ~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
++ -+.++..|..-+. ...|+..+-...|.+..+.+.|.. ..|..+...|-..|+++.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 21 0112222222221 224556677777777766533322 3477777888888888888888
Q ss_pred HHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCC------CHHHHHHHHHHHHc
Q 014978 137 FLELKKTKIDPD---WISYSTLTSLYIKMELPEKAATTLKEMEKR-----------TCRK------NRVAYSSLLSLYTN 196 (415)
Q Consensus 137 ~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~ 196 (415)
|++..+-..+.- ..+|......=.+..+++.|+++++....- +.++ +...|...+..--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 888776643322 335666666666677777777777665431 0111 23345555666566
Q ss_pred CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHh---cCcHHH
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYIN---RNQLEM 272 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~ 272 (415)
.|-++....+|+++.+..+.......| ....+....-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677777777777776654431111111 111223344455555555543332112221 234443333332 123555
Q ss_pred HHHHHHHHHhCCCCCCHh--------------------------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 273 AESFYNRLVTKGIKPCYT--------------------------------------TWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~--------------------------------------~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
|..+|++.++ |++|... .|+..|.-....=.+.....+|++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 5555555555 3333221 233333222222222233334444
Q ss_pred hHhcccCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 014978 315 AIGSVRKWVPDHRL---ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMPLIIVERMQ 385 (415)
Q Consensus 315 ~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~a~~~~~~m~ 385 (415)
+++ .-|+... .......=.+.|.++.|+.++....+.-.+ ++..|.+.=..-.+.|+ .+.+++|.
T Consensus 648 aIe----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn--edT~keML 717 (835)
T KOG2047|consen 648 AIE----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN--EDTYKEML 717 (835)
T ss_pred HHH----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 443 1233322 122223345678899999998888775444 56788888888888887 44444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-07 Score=75.55 Aligned_cols=358 Identities=12% Similarity=0.085 Sum_probs=191.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
...-.+....++..|+.+++-....... ..+--.+..++.+.|++++|...|..+.+.. .++...+..+..++.-.|
T Consensus 27 P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 27 PELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred chHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 3455777888888898888876654321 2233445667778899999999888877654 456666666666666667
Q ss_pred CcCcHHHHHHHHhhc--------------------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 95 QLDKVPQMLQELKKN--------------------------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
.+.+|..+-.+..+. ......---+|.......-.+.+|++++.+.... .|+
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 777776655432210 0111122223444444445677788888877765 344
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CChHHH--HH----------HHHHHHHc
Q 014978 149 WISYST-LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM--GYKDEV--LR----------IWKKMMSL 213 (415)
Q Consensus 149 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a--~~----------~~~~~~~~ 213 (415)
-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+. |+..+. .+ ..+.+.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 444443 445566777777777777766654 233344444333222221 211111 00 11111111
Q ss_pred c------------cccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhc-------
Q 014978 214 F------------AKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA--YINR------- 267 (415)
Q Consensus 214 ~------------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~------- 267 (415)
+ +-|. +..-..++-.|.+.+++.+|..+.+++ .|.+ .+..++.+ +...
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----~Ptt-P~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----DPTT-PYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----CCCC-hHHHHHHHHHHHHhhhhcCcH
Confidence 0 0010 011223444567778888887777654 2221 11112221 1222
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
..+.-|.+.|+..-+.+...|.. --.++...+.-..++++.+.++....+ -+..|......+.++.+..|++.+|+
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s---YF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES---YFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchhhhHHHHHHHHhcChHHHH
Confidence 23555666666554444333222 223444555555667777777776655 23344444445677777788888888
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHhcCCCcHHHHHHHHhCC
Q 014978 347 HLLVTLRNAGHVSTEIYN-SLLRTYAKAGKMPLIIVERMQKDN 388 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~a~~~~~~m~~~~ 388 (415)
++|-++....+.+..+|. .|.++|.+++++.++ ++.|.+.+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA-W~~~lk~~ 455 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA-WDMMLKTN 455 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH-HHHHHhcC
Confidence 888777666656665554 445566666665322 33444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-07 Score=79.73 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=161.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
-.|+.+..-|+-++|...-.......+ +.+.|+.+.-.+....++++|++.|......+ +.|...|.-+.-.-++.++
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 456777888999999988888777654 77889999888888999999999999998876 4566777777777778889
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLT------SLYIKMELPEKA 168 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a 168 (415)
++........+.+..+.....|..++.++.-.|+...|..++++..+.. ..|+...+.... ....+.|.+++|
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 9988888888887777788889999999999999999999999888664 246666654433 334557888888
Q ss_pred HHHHHHHHhcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH-HHHHHhcCChHHHH-HHHHHH
Q 014978 169 ATTLKEMEKRTCRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV-ISSLVKLGEFEKAE-NIYDEW 245 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~-~~~~~~ 245 (415)
++.+..-... ..|... -..-...+.+.+++++|..++..++..+ ||..-|... ..++.+..+.-++. .+|...
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8887765543 123222 2344567778888999999998888754 455544433 33333333333333 455444
Q ss_pred H
Q 014978 246 E 246 (415)
Q Consensus 246 ~ 246 (415)
.
T Consensus 281 s 281 (700)
T KOG1156|consen 281 S 281 (700)
T ss_pred h
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-07 Score=83.45 Aligned_cols=363 Identities=15% Similarity=0.030 Sum_probs=229.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHH-hcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKM-RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYI-SNG 94 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~ 94 (415)
..++....|+++.+.+.|+....-. -....|+.+...+...|.-..|+.+++......-.|+ ...+-..-..|. +.+
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 3446678899999999998876542 3567788888888888888888888887654322233 333332233333 355
Q ss_pred CcCcHHHHHHHHhhc-----CCCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKN-----TSPDVVTYNLWLAACASQ-----------NDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
..++++++-.++... ..-....|..+.-+|... ....++++.+++..+.+ +.|+.....+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 666666666665441 222333444444444321 12345777777777664 2233333334445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-c--------------C----h
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-M--------------N----D 219 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~----~ 219 (415)
|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+........ . | .
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 6666778888888887777654567777777777777778888888777766543111 0 0 0
Q ss_pred hhHHHHHHHHH------h---c--------------CChHHHHHHHHHH-----------------HhccCC--CC----
Q 014978 220 AEYTCVISSLV------K---L--------------GEFEKAENIYDEW-----------------ESISGT--GD---- 253 (415)
Q Consensus 220 ~~~~~l~~~~~------~---~--------------g~~~~a~~~~~~~-----------------~~~~~~--~~---- 253 (415)
.|...++...- . . ++..++......+ ...... |+
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 01111111111 0 0 0111111111111 000111 22
Q ss_pred --CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HHHHH
Q 014978 254 --PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLIT 330 (415)
Q Consensus 254 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~ 330 (415)
...|......+.+.++.++|...+.+..... .-....|......+...|.+.+|.+.|..+.. +.|+ +....
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~ 722 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHH
Confidence 2245677788889999999998888877642 23556777777888899999999999999987 5555 46778
Q ss_pred HHHHHHHHcCChhHHHH--HHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 331 AAYNKLEEQGDIDGAEH--LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
++...+.+.|+...|.. ++..+.+.++.+...|-.+...+-+.|+. |...|..-.+
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 89999999999888888 99999999999999999999999999998 3445554433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-06 Score=77.74 Aligned_cols=340 Identities=13% Similarity=0.040 Sum_probs=231.0
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCCHhHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVTYNLW 120 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l 120 (415)
.++..|..+.-+....|+++.+.+.|++...-- .-....|+.+...+...|.-..|..+++.-... .+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 578889999999999999999999999887532 345677888988999999999999999886554 35555555555
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCH
Q 014978 121 LAACA-SQNDKETAEKAFLELKKT--KI--DPDWISYSTLTSLYIKM-----------ELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 121 ~~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
...|. +.+..++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.+ +.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 55554 457778888877777662 11 12334455555555432 23467889999998765 2333
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCC-----------
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGTG----------- 252 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~----------- 252 (415)
.....+.--|+..++.+.|.+..++..+.+..-+...|..+...+...+++.+|+.+.+..... +...
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333344556777899999999999999866667888998888889999999999998876542 2100
Q ss_pred -------CCchHHHHHHHHHh---------c--------------CcHHHHHHHHHHH--------HhC---------CC
Q 014978 253 -------DPRVPNILLAAYIN---------R--------------NQLEMAESFYNRL--------VTK---------GI 285 (415)
Q Consensus 253 -------~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~--------~~~---------~~ 285 (415)
...|...++..+-. . .+..++.+....+ ... .+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 01111122221110 0 0111111111110 001 11
Q ss_pred C--CC------HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 286 K--PC------YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 286 ~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
. |+ ...|......+.+.+..++|...+.++.. ..+-....|......+...|..++|.+.|......+|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 2 23 12455667778899999999999998876 3445667777777888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC--cHH--HHHHHHhC
Q 014978 358 VSTEIYNSLLRTYAKAGKM--PLI--IVERMQKD 387 (415)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~--a~~--~~~~m~~~ 387 (415)
..+....++..++.+.|+. +.. ++..+.+.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 9999999999999999977 333 45554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=90.55 Aligned_cols=251 Identities=17% Similarity=0.141 Sum_probs=108.8
Q ss_pred HHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
+.-.|.+..++.-.+ .... .+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334455555554443 1111 1122333444555555666554332 2222222 44444444443333322333334
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 169 ATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333332222121 1222222224444556666665555432 1333444555555666666666666666554
Q ss_pred ccCCCCCchHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC
Q 014978 248 ISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 323 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 323 (415)
.+ +..+...++.++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.. .-+
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~ 232 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDP 232 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-C
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hcc
Confidence 32 22233334333332 22455666666665443 234555555555556666666666666665544 122
Q ss_pred CCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCC
Q 014978 324 PDHRLITAAYNKLEEQGDI-DGAEHLLVTLRNAGHV 358 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 358 (415)
-+..++..++.+....|+. +.+.+.+.++....|.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3444555555555555555 4455555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-09 Score=89.31 Aligned_cols=148 Identities=16% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH----HhcCC
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL----VKLGE 234 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~ 234 (415)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++ ...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555554444321 133333344445555555555555555554421 11 1222222222 11224
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHH
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFK 313 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 313 (415)
+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+. -++.+...++......|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 233444455555555555555555555555544321 1334444444444444544 34444555
Q ss_pred HhHh
Q 014978 314 KAIG 317 (415)
Q Consensus 314 ~~~~ 317 (415)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-07 Score=73.77 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccH-HHHHHHHHh
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHMLNLYIS 92 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 92 (415)
.+-.|-.+...|++.+|+..|..+.+-.|+. .++-.-...|...|+-.-|+.-+...++. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 4555666677788888888888887743322 22333355677788888888888777774 4653221 122345777
Q ss_pred cCCcCcHHHHHHHHhhcCCCC---HhH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPD---VVT------------YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~---~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
+|.++.|..-|+.+....+.+ ... ....+..+...|+...|+.....+++.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 888888888888877653322 111 1223334555677777777777777663 556677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh----HHHH---H----
Q 014978 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE----YTCV---I---- 226 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---~---- 226 (415)
+|...|++..|+.=+....+.. ..++.++.-+-..+...|+.+.++...++.++. .||... |..+ .
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 7777777777777666665543 234555555666677777777777777777663 334321 1111 1
Q ss_pred --HHHHhcCChHHHHHHHHHHHhccCCCCCchH---HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHH
Q 014978 227 --SSLVKLGEFEKAENIYDEWESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPC-YTTWELLTWGYL 300 (415)
Q Consensus 227 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 300 (415)
......++|.++..-.+...+..+......+ ..+-.++...+++.+|++.-.+.++- .|| ..++.--..+|.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHh
Confidence 1122334455555555555444322122222 22333344455566666655555553 332 445555555555
Q ss_pred hcCCHHHHHHHHHHhHh
Q 014978 301 KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~ 317 (415)
-...++.|+.-|+.+.+
T Consensus 353 ~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 55566666666666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-07 Score=90.73 Aligned_cols=355 Identities=13% Similarity=0.037 Sum_probs=176.6
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
..+...|++.+|...+..+.....-..............|++..+...++.+.......++.........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34455666666666555554321011111222233445666666666665542211112222333344455566777777
Q ss_pred HHHHHHHhhcCC-------CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 014978 100 PQMLQELKKNTS-------PD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPE 166 (415)
Q Consensus 100 ~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~ 166 (415)
...+........ +. ......+...+...|++++|...+++..+.-...+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 777766543311 11 111222334455677777777777776553111111 23345555666677777
Q ss_pred HHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----ccc--c-ChhhHHHHHHHHHhcCC
Q 014978 167 KAATTLKEMEKRTC---RKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK--M-NDAEYTCVISSLVKLGE 234 (415)
Q Consensus 167 ~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~ 234 (415)
+|...+++.....- .+. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 77777776653210 111 223444556666777777777777665543 111 0 11223344455566677
Q ss_pred hHHHHHHHHHHHhccC--CC--CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHH-----HHHHHHHhcCC
Q 014978 235 FEKAENIYDEWESISG--TG--DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWE-----LLTWGYLKKGQ 304 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~-----~l~~~~~~~~~ 304 (415)
+++|...+.+...... .+ ....+..+...+...|+.+.|.+.+......... .....+. ..+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 7777777776544211 11 1223334555666677777777777666431000 0001010 11233344667
Q ss_pred HHHHHHHHHHhHhcccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHhcCC
Q 014978 305 MEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHV--STEIYNSLLRTYAKAGK 375 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~ 375 (415)
.+.|..++...... ...... ..+..+..++...|++++|...++++... +.. ...+...+..++.+.|+
T Consensus 669 ~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 77777776554331 111110 11234555666777777777777766543 222 12345556666667776
Q ss_pred C
Q 014978 376 M 376 (415)
Q Consensus 376 ~ 376 (415)
.
T Consensus 747 ~ 747 (903)
T PRK04841 747 K 747 (903)
T ss_pred H
Confidence 5
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=74.85 Aligned_cols=307 Identities=13% Similarity=0.090 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHhcCCcCcHHHHHHHHhhcCCCCH-hHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML---NLYISNGQLDKVPQMLQELKKNTSPDV-VTYNLW 120 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l 120 (415)
+.----+...+...|++..|+.-|....+. |+..|..+. ..|...|+...|+.-+.+..+. +||- .+--.-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQR 112 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHh
Confidence 344456778888899999999999988874 334455443 5688889999999988888765 4443 333445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDW----ISY------------STLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
...+.++|.++.|..=|+..++.. |+. ..+ ...+..+...|+...|+.....+.+.. +-|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 567889999999999999999874 321 111 233445666789999999998888762 4467
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc-hHHH---H
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR-VPNI---L 260 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~---l 260 (415)
..|..-..+|...|++..|+.=++...+.... +..++..+-..+...|+.+.++..+++..+. .||-. +|.. +
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 77777888999999999998888877665433 5556666777788899999999999888875 34433 2221 1
Q ss_pred ---------HHHHHhcCcHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HH
Q 014978 261 ---------LAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HR 327 (415)
Q Consensus 261 ---------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~ 327 (415)
+......+++.++....+...+........ .+..+-.++...+++.+|++...+.+. +.|+ ..
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~----~d~~dv~ 342 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD----IDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----cCchHHH
Confidence 223344566777777777776654331222 333455566778889999999999887 4554 78
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 366 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 366 (415)
++.--..+|.-...++.|+.-|+...+.+..+..+-.-+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888888889888999999999999998888766554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=87.26 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34455555555555555442 3334455555555555555555555555555442 223444444555555555555555
Q ss_pred HHHHHHHHcccc-----c---ChhhHHHHHHHHHhcCChHHHHHHHHHHH-hccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 205 RIWKKMMSLFAK-----M---NDAEYTCVISSLVKLGEFEKAENIYDEWE-SISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 205 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
..++.-+...++ + +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555544332110 0 0000000 01111122223333333333 22323555566666666666666666666
Q ss_pred HHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 276 FYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 276 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.|+..+.. +| |..+||.|...++...+.++|+..|+++++ ++|+. .....|.-+|...|.+++|...|-.++
T Consensus 452 cf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666653 23 455666666666666666666666666655 45543 344555556666666666666655444
Q ss_pred HcCCC----------CHHHHHHHHHHHHhcCCC
Q 014978 354 NAGHV----------STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 354 ~~~~~----------~~~~~~~l~~~~~~~g~~ 376 (415)
..... +..+|.+|=.++.-.++.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 32111 124566555555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-06 Score=74.34 Aligned_cols=353 Identities=13% Similarity=0.049 Sum_probs=210.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 129 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (415)
+=+..+...|++++|.+...+++..+ +.+...+..-+-++++.+++++|+.+.+.-... ..+...+-.-+-+..+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHccc
Confidence 33567788999999999999999876 556677778888899999999999665543211 1111111233556678999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------------------------
Q 014978 130 KETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---------------------------- 180 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------- 180 (415)
.++|+..++ |..+ +..+...-...+.+.|++++|+.+|+.+.+++.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 999999998 2233 334666777889999999999999999866421
Q ss_pred CCCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHcc-------cccChh-------hHHHHHHHHHhcCChHHHHHHHH
Q 014978 181 RKNRVAYSS---LLSLYTNMGYKDEVLRIWKKMMSLF-------AKMNDA-------EYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 181 ~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.| ..+|.. ....+...|++.+|+++++...+.+ -.-+.. .-..+.-.+-..|+-.+|..++.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 11 113332 3345667899999999999883211 110011 12234445677899999999999
Q ss_pred HHHhccCCCCCchH----HH-----------------------------------------------HHHHHHhc-----
Q 014978 244 EWESISGTGDPRVP----NI-----------------------------------------------LLAAYINR----- 267 (415)
Q Consensus 244 ~~~~~~~~~~~~~~----~~-----------------------------------------------l~~~~~~~----- 267 (415)
.+.+.++ +|.... |. ++..|...
T Consensus 249 ~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 249 DIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8887653 232110 00 11111100
Q ss_pred ---------------------------CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc-
Q 014978 268 ---------------------------NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV- 319 (415)
Q Consensus 268 ---------------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 319 (415)
.....+.+++...-+....-...+...++......|+++.|++++....+..
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 0112222222222222111112233445556667788888888777221100
Q ss_pred ---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 320 ---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HVS----TEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 320 ---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
..+.-.+.+...+...+.+.++.+.|..++.+..+.- ... ..++..+...-.+.|+- |..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 1233344555666666777777777777776665421 111 12333444444455665 57778888775
Q ss_pred CCCCCHHHH-HHHHHhccCCcccccc
Q 014978 388 NVQMDAETQ-KVLKITSEMPVSEVSS 412 (415)
Q Consensus 388 ~~~p~~~t~-~~l~~~~~~~~~~~~~ 412 (415)
. ++|..+. .++.+++...++.+..
T Consensus 488 n-~~d~~~l~~lV~a~~~~d~eka~~ 512 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARLDPEKAES 512 (652)
T ss_pred C-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 4 3555555 7889999888776553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-06 Score=87.15 Aligned_cols=339 Identities=10% Similarity=0.052 Sum_probs=218.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCC--CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------CCCc--ccHHHHHHH
Q 014978 20 VAQAQALQTRARENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF------LKCP--LPYNHMLNL 89 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~ 89 (415)
......|+++.+..+++.++... .++.........+...|+++++...+......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456677888888887765331 2333344455566788999999999988754310 0111 111222345
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP-D----VVTYNLWLAACASQNDKETAEKAFLELKKTKI---DP--DWISYSTLTSLY 159 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~l~~~~ 159 (415)
+...|++++|...++......+. + ....+.+...+...|++++|...+++...... .+ ...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56789999999999987654222 2 13456677778889999999999988864311 11 123456677788
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc--cccC--hhhHHHHHHH
Q 014978 160 IKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN--DAEYTCVISS 228 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 228 (415)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 211 1 22334456667778899999999998876531 1111 2244556667
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCC-CchH-----HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHH
Q 014978 229 LVKLGEFEKAENIYDEWESISGTGD-PRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCY---TTWELLTWGY 299 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~ 299 (415)
+...|+.+.|...+........... ...+ ...+..+...|+.+.|..++............ ..+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7889999999999988755311111 1111 11224445678999999998776542211111 1134566778
Q ss_pred HhcCCHHHHHHHHHHhHhccc--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 300 LKKGQMEKVLECFKKAIGSVR--KWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
...|++++|...+.++..... +..++ ..+...+..++.+.|+.++|...+.+..+....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999999999998876321 22221 245666777899999999999999998875433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-07 Score=74.02 Aligned_cols=292 Identities=9% Similarity=-0.016 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+.+++..+.+..+++.|++++....++. +.+......+..+|-...++..|.+.++++....|.-...----...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444555555566666666666555543 224445555555666666666666666665544333332222334455556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLT--SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
+.+..|+++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666555432 1111111111 11233455555666655554322 33333344444455666666666
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC----------------------------chH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP----------------------------RVP 257 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------------~~~ 257 (415)
-|....+.+---....|+..+ +..+.|+++.|.+...++.+.|+...+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 666655542222333444333 344556666666666665554432110 123
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTK-GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
|.-...+.+.|+.+.|.+.+..|.-+ .-..|+.|...+.-.-. .+++.+..+-+.-.+.. -+....||..++-.|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~---nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ---NPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc---CCCChHHHHHHHHHH
Confidence 44444555566666666655555321 11224444443322211 22333333333333331 122345555555555
Q ss_pred HHcCChhHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVT 351 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~ 351 (415)
++..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 555555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.4e-07 Score=75.56 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
..+-..+...++.++|+.++.++.+..|.+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 333344555666777777777766666666666666666666666 4567777777766653 33444555554445555
Q ss_pred CCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc---CCh--
Q 014978 163 ELP--EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL---GEF-- 235 (415)
Q Consensus 163 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~-- 235 (415)
|+. ++++.+++++.+.. +-+..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 542 45566666666553 345666666666666666677777777776665543 444555444443333 111
Q ss_pred --HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 236 --EKAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 236 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
+.......++.... +-|...|+.+...+... ++..+|.+.+.+....++ .+......|+..|+
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 23444444444443 23555555555555442 222344455544443321 13334444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-07 Score=76.50 Aligned_cols=213 Identities=8% Similarity=0.012 Sum_probs=117.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+..|.+..+|+...-++.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 344444555666677777777766643 223345555555555555 456677777666666666666666665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCh--
Q 014978 128 NDK--ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM---GYK-- 200 (415)
Q Consensus 128 ~~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 200 (415)
|+. +++..+++++.+.. +-|..+|+....++.+.|+++++++.++++.+.+ +-+...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 542 55666666666554 3455666666666666677777777777776654 23455555555444433 222
Q ss_pred --HHHHHHHHHHHHcccccChhhHHHHHHHHHhc----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 014978 201 --DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----GEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266 (415)
Q Consensus 201 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (415)
++.+++..+++...+. +...|+-+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555554332 445566555555542 23344555555554432 2244445555555553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-06 Score=69.32 Aligned_cols=352 Identities=13% Similarity=0.043 Sum_probs=182.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
+.-+....++..|+.+++.-...+-.....+---+..++.+.|++++|...+..+.....++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 56667788999999998876654422222333345577888999999999999988777788888888888888889999
Q ss_pred HHHHHHHHHHhCCC--------------C-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 132 TAEKAFLELKKTKI--------------D-----------PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 132 ~a~~~~~~~~~~g~--------------~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
+|..+-....+..+ . .+..---+|.......-.+.+|++++.+.... .|+...
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIA 186 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhhh
Confidence 98887654422100 0 00011112233333333456666666666544 234333
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH--------------HhccC-
Q 014978 187 YSSL-LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW--------------ESISG- 250 (415)
Q Consensus 187 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------------~~~~~- 250 (415)
.|.. .-+|.+..-++-+.++++-..+..+. +....+....-..+.=.-..|..-.+.+ .++++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 3332 23445555566666666655554221 2223332222111111101111111111 11100
Q ss_pred -----------CC-----CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-------CHHH
Q 014978 251 -----------TG-----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-------QMEK 307 (415)
Q Consensus 251 -----------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~ 307 (415)
-| -+..-..|+-.|.+.+++.+|..+.+++.-. .| .-|..-.-.+...| ...-
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP--~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TP--YEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--Ch--HHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 00 0112223444566677777777666554321 12 22211111222222 2344
Q ss_pred HHHHHHHhHhcccCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERM 384 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m 384 (415)
|.+.|+..-+ .+..-|. .--.++..++.-..++++.+-.+..+...-..+...--.+.++++..|++ +.++|-..
T Consensus 342 AqqffqlVG~--Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 342 AQQFFQLVGE--SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHhcc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 5555554333 2222111 11223444444455678888888887776555555556788889999988 46666555
Q ss_pred HhCCCCCCHHHH-HHHHHhccCC--ccccccc
Q 014978 385 QKDNVQMDAETQ-KVLKITSEMP--VSEVSSI 413 (415)
Q Consensus 385 ~~~~~~p~~~t~-~~l~~~~~~~--~~~~~~~ 413 (415)
....+ -|..+| .+|..|.-.. ++-++++
T Consensus 420 s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 420 SGPEI-KNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred cChhh-hhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 44433 455566 5555554322 5555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-08 Score=81.24 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cc---cHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PL---PYNH 85 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~---~~~~ 85 (415)
..+..+..+...|++++|...|+.+....|+. .++..+..++...|++++|...++++.+.. |+ .. ++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence 34555666666666666666666665554432 345556666666666666666666666543 22 21 2333
Q ss_pred HHHHHHhc--------CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 86 MLNLYISN--------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 86 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
+..++... |++++|.+.|+.+....|.+...+..+.......+ .. ......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----------~~--------~~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----------RL--------AGKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----------HH--------HHHHHHHHH
Confidence 33334332 45556666666655544444333322221110000 00 001124567
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 158 LYIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
.+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78899999999999999887521 1234678888999999999999999988887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-06 Score=74.19 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=214.6
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
.+.+..|+++.|+..|.+.+... ++|...|..-..+|...|++++|++=-.+-++..|.-...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45667899999999999999876 55888899999999999999999888777776667778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------------CCH-------HHH-HHHHHHHHhc---------
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKM-----------------ELP-------EKA-ATTLKEMEKR--------- 178 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----------------~~~-------~~a-~~~~~~~~~~--------- 178 (415)
|+..|.+-++.. +.+...++-+..++... +++ +.+ ..++..+.+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999988773 44455566666555211 000 000 0000000000
Q ss_pred -----------------------------CCCC------------C----------HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 179 -----------------------------TCRK------------N----------RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 179 -----------------------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
+..| | ..-...+.++..+..+++.+++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0011 0 011344555666666777777777
Q ss_pred HHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH-------HHHHHhcCcHHHHHHHHHHH
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL-------LAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~ 280 (415)
....+.. -+..-++....++...|.+.++...-....+.|.. ....|+.+ ..+|.+.++.+.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7776654 23334555566677777777766666665554422 22223322 33555566777787777776
Q ss_pred HhCCCCCCHhHHH-------------------------HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 281 VTKGIKPCYTTWE-------------------------LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 281 ~~~~~~p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
+.....|+..+-. .-...+.+.|++..|+..|.+++. ..+-|...|..-.-+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAAC 401 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHH
Confidence 6543333332211 113446677888888888888877 235567778888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHH-HHHHHhc
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQ-KVLKITS 403 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~-~~l~~~~ 403 (415)
|.+.|.+..|+.-.+...+.++.....|..=..++....+| +.+.|.+-++.+ |+..-+ .-+..|.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 88888888888888888777776655555555555555555 344444433332 444444 3444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-07 Score=86.33 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDP---DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
|.+...|-..|......++.+.|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444444555555555555555555555554432 1110 11133444444444444444555555554431 11223
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHH
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYI 265 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 265 (415)
|..|...|.+.+.+++|.++++.|.+..- -....|...+..+.+..+-+.|..++.+..+.-+. -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 44455555555555555555555554422 23334555555555555555555555544442111 02223333344444
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.|+.+.+..+|+..+...+ --...|+..+..-.+.|+.+.+..+|++++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 45555555555555444321 1233455555555555555555555555555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-08 Score=86.38 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=183.9
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
..-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +||+..|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 334556778888999999999998874 6788899999999999999999988885 889999999998888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.-.-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+..+ .-..+|.....+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 222333334457899999999998777543 255678888888889999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 320 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 320 (415)
.|....... +.+...||.+..+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++....
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~- 617 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR- 617 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh-
Confidence 999887754 3367789999999999999999999999999876 4456677788888889999999999999988742
Q ss_pred CCCCCHHHHHHHHHHHH
Q 014978 321 KWVPDHRLITAAYNKLE 337 (415)
Q Consensus 321 ~~~p~~~~~~~l~~~~~ 337 (415)
...-|......++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 22235555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-07 Score=85.27 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 265 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (415)
.+..+..+|-+.|+.+++..+|+++.+..+. +..+.+.+...+... ++++|..++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444555555555555555555555554422 444455555555555 555555555544332 33
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHH
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 345 (415)
..+++..+.++|.++.... |+ +.+.-..+.+.+..+ .+..--..++..+...|...++++++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGH-REFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4445555555555555432 11 122222222333221 12233345566667778888999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-cHHHHH-HHHhCCCCCC
Q 014978 346 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM-PLIIVE-RMQKDNVQMD 392 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-a~~~~~-~m~~~~~~p~ 392 (415)
..+++.+.+..+.+..+..-++.+|. +.+ +...++ .++..|+.-+
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccccC
Confidence 99999999999998888999999888 555 333333 2333444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-06 Score=84.94 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcCCChHHHH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-----NRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
++.|.++-+..+.. +-+...|-..|......++.++|.++.+++... +.+ -...|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 34445544444443 445567777888888888888888888887654 211 1245667777666777777888
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 284 (415)
++|+++.+. .-....|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+.++-+.|..++.+.++.=
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 888888774 2133467788888888888888888888887652 3466788888888888888888888888877642
Q ss_pred CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH---
Q 014978 285 IK-PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST--- 360 (415)
Q Consensus 285 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 360 (415)
++ -......-.+..-.+.|+.+.+..+|+..+. ..+--...|+..+..-.++|+.+.++.+|+++...+..+-
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 11 1233445555566678888888888888776 3444567888888888888888888888888888777643
Q ss_pred HHHHHHHHHHHhcCCC
Q 014978 361 EIYNSLLRTYAKAGKM 376 (415)
Q Consensus 361 ~~~~~l~~~~~~~g~~ 376 (415)
..|...+..-.+.|+-
T Consensus 1672 fffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHHHHhcCch
Confidence 5577777777776765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-07 Score=75.68 Aligned_cols=191 Identities=14% Similarity=0.025 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChh--h
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA--E 221 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 221 (415)
.....+..+...+.+.|++++|...|+++.... +.+. ..+..+..++...|++++|...++++.+..+..... +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455677778888889999999999999887753 2222 456777888889999999999999998765432221 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHH
Q 014978 222 YTCVISSLVKL--------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWE 293 (415)
Q Consensus 222 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 293 (415)
+..+..++... |+.++|.+.++.+.+..+. +...+..+..... .... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 44455555543 6677888888887765322 2222222211100 0000 00 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
.+...+.+.|++++|+..++.+++.....+.....+..+..++...|++++|..+++.+....+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556678889999999999998873222223456788888889999999999998888876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-07 Score=83.70 Aligned_cols=237 Identities=14% Similarity=0.119 Sum_probs=184.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
||--..-..+...+...|-..+|..+|++.. .|.-.+.+|...|+.++|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788888999999999998764 3566788999999999999999888874 7899999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888877788888888765332 22222333345799999999999877765 44677888888999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 271 EMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
+.|.+.|...... .| +...||.+-.+|.+.++-.+|...++++.+ .. .-+...|...+....+.|.++.|++.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999998875 45 557999999999999999999999999998 44 445566777777788999999999999
Q ss_pred HHHHHcCCC--CHHHHHHHHHHHH
Q 014978 350 VTLRNAGHV--STEIYNSLLRTYA 371 (415)
Q Consensus 350 ~~~~~~~~~--~~~~~~~l~~~~~ 371 (415)
.++.+.... ++.+...++....
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHHH
Confidence 998774433 4444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-07 Score=71.98 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=109.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+..|.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3457788888876544432221 11 0 1112556677777777777777888888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLY-IKMEL--PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 208 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 208 (415)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998888875 45677777777764 66676 488999998888874 4467778888888888899999999999
Q ss_pred HHHHcc
Q 014978 209 KMMSLF 214 (415)
Q Consensus 209 ~~~~~~ 214 (415)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 888764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=74.47 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=138.1
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
|..+ ..+-..+...|+-+.+..+..+..... +.|....+.++....+.|++..|...+.+.....|+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 5555 677788888899988888888765432 34556667788999999999999999999998899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
|.+.|+++.|..-|.+..+.- +-+...++.|.-.+.-.|+.+.|..++......+ ..|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999999873 4466778889989999999999999999998774 34677777888888999999999
Q ss_pred HHHHHHHHH
Q 014978 204 LRIWKKMMS 212 (415)
Q Consensus 204 ~~~~~~~~~ 212 (415)
..+...-..
T Consensus 222 ~~i~~~e~~ 230 (257)
T COG5010 222 EDIAVQELL 230 (257)
T ss_pred Hhhcccccc
Confidence 998776543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-06 Score=65.34 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=124.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
.-.|++..++..-...... +.+...-.-+.++|...|.+..... ++.... .|.......+......-++.++-.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3345555554444433322 1233333344555555555433222 121111 233333333333333333333332
Q ss_pred -HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 205 -RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 205 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++.|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 233333333333232233333445667777777777665411 2223333345556667777777777777663
Q ss_pred CCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 284 GIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 284 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
-+..|.+.|..++.+ .+.+.+|..+|+++.+ +.+|+..+.+....++...|++++|..+++........+
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 245566655555543 3456777777777755 467777777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhcCCC
Q 014978 360 TEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 360 ~~~~~~l~~~~~~~g~~ 376 (415)
+.+...++.+-...|+.
T Consensus 241 petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666666666665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-05 Score=73.93 Aligned_cols=261 Identities=15% Similarity=0.159 Sum_probs=166.1
Q ss_pred CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 42 MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG--FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
..|+..-+..+.++...+-+.+-+++++++.-.. +.-+...-|.|+-...+ -+..++.++.+++..-..|+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~------ 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD------ 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh------
Confidence 3577777888888888899999999998887432 11122223334333333 45566777777765444443
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++.. .+..|+.+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 3455566777888888887653 24444444444 3356677766665542 44578888888888888
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
..+|++-|-+. .|+..|..+++.+.+.|.+++-.+.+.-..+...+|. .-+.|+-+|++.+++.+..+++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-
Confidence 88887766543 2455688888888888888888888777666544443 34567788888888776655431
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 280 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
-||......+..-|...|.++.|.-+|... ..|..|...+...|+++.|...-
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666677777777777666555543 22455555555555555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-06 Score=68.37 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
-..+...|+-+....+........+.|....+.++....+.|++..|...+++..... ++|..+|+.+.-+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3344444555555554444443334444444445555555555555555555554442 444555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
.|..-|.+..+.. +.+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|+++.
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555554431 223334444444444455555555555554443222 3333444444444555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-07 Score=85.90 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.++-.|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++.....|.+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 57888888888888899999999998888864 23455667777888888899999998888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
+.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.- .+....|+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 889999999999999888743 4457788888888888899999988888887652 333344443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-08 Score=76.06 Aligned_cols=161 Identities=7% Similarity=-0.002 Sum_probs=125.1
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 19 RVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
...|...|+++......+.... |. ..+...++.+++...++...+.+ +.+...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456788888887555433322 11 12223677788888888888765 5678899999999999999999
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAAC-ASQND--KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|...|++..+..|.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|...++++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999888888999999999874 67777 599999999999885 457778899999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHH
Q 014978 176 EKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~ 193 (415)
.+.. +|+..-+. +|..
T Consensus 171 L~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 171 LDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HhhC-CCCccHHH-HHHH
Confidence 8874 55555443 3343
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-05 Score=65.93 Aligned_cols=365 Identities=14% Similarity=0.117 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+...+..++...++++.+.++++...-| ++..|..-|..-...++++....+|.+.+..- .+...|...+..--+
T Consensus 21 ~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~ 98 (656)
T KOG1914|consen 21 DSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRE 98 (656)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHH
Confidence 356677777888899999999999988766 67889999999999999999999999988753 456677766653332
Q ss_pred -cCCcCcHH----HHHHHHhhc---CCCCHhHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCCCHHHHH--
Q 014978 93 -NGQLDKVP----QMLQELKKN---TSPDVVTYNLWLAAC---------ASQNDKETAEKAFLELKKTKIDPDWISYS-- 153 (415)
Q Consensus 93 -~~~~~~a~----~~~~~~~~~---~~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-- 153 (415)
.++...+. +.|+-.... ...+...|+..+..+ ....+++...++|++++...+..=...|+
T Consensus 99 ~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY 178 (656)
T KOG1914|consen 99 TKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY 178 (656)
T ss_pred HccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 34444432 233333332 233444566655543 33345667778888877542211111111
Q ss_pred ----HHHHHH-------HhcCCHHHHHHHHHHHHh--cCCCCC---------------HHHHHHHHHH------------
Q 014978 154 ----TLTSLY-------IKMELPEKAATTLKEMEK--RTCRKN---------------RVAYSSLLSL------------ 193 (415)
Q Consensus 154 ----~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~---------------~~~~~~l~~~------------ 193 (415)
.=++.. -+...+-.|.++++++.. .|+... ...|..+|..
T Consensus 179 ~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 179 EAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 111110 011223344444444332 111000 0012222211
Q ss_pred -------------------------------------HHcCCC-------hHHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 194 -------------------------------------YTNMGY-------KDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 194 -------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
+...|+ .+++..+++.....-..-+..+|..+...-
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~e 338 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYE 338 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 111111 233444444433322222222333322211
Q ss_pred HhcC---ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCH
Q 014978 230 VKLG---EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 230 ~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 305 (415)
...- ..+.....++++...-..--.-+|..+++.-.+..-++.|..+|.++.+.+..+ +...+++++.-++ .++.
T Consensus 339 E~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~ 417 (656)
T KOG1914|consen 339 ESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDK 417 (656)
T ss_pred HHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCCh
Confidence 1111 244555555555543222234577788888888889999999999999987777 6667778887665 4889
Q ss_pred HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCCc--HHH
Q 014978 306 EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGKMP--LII 380 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~a--~~~ 380 (415)
..|.++|+.-+. ...-+..-....+.-+...++-..++.+|+++...+.. ...+|..++.--..-|+.+ .++
T Consensus 418 ~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 418 ETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999998776 34445555567788888999999999999999998444 3488999999999999984 444
Q ss_pred HHHH
Q 014978 381 VERM 384 (415)
Q Consensus 381 ~~~m 384 (415)
-+++
T Consensus 495 ekR~ 498 (656)
T KOG1914|consen 495 EKRR 498 (656)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-06 Score=80.59 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH--------
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV-------- 114 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 114 (415)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+....+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 5678889999999999999999999977765 354 44454455566677776665554 3322222222
Q ss_pred -----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 115 -----------VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 115 -----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
.++..++.+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|.+++.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 344445555555555555555555555544 33444555555555555 5555555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=70.99 Aligned_cols=93 Identities=9% Similarity=-0.142 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+...|++++|...|+......|.+...|..+..++.+.|++++|...|++....+ +.+...+..+..++.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344445555555555555555554455555555555555555555555555555555543 3344455555555555555
Q ss_pred HHHHHHHHHHHHhc
Q 014978 165 PEKAATTLKEMEKR 178 (415)
Q Consensus 165 ~~~a~~~~~~~~~~ 178 (415)
+++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-09 Score=55.64 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 144 KIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 144 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00014 Score=67.80 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 014978 329 ITAAYNKLEEQGDID---GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAETQKVLKITS 403 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~l~~~~ 403 (415)
.+.|+..+.+.++.. +|+-+++......+.+..+--.+|+.|+--|-+ |.++++.|.-..++-|..-+-+++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 466778888887755 566666676777777778888899999988876 578888888888888877776776666
Q ss_pred cCC
Q 014978 404 EMP 406 (415)
Q Consensus 404 ~~~ 406 (415)
..+
T Consensus 519 t~g 521 (932)
T KOG2053|consen 519 TSG 521 (932)
T ss_pred hcc
Confidence 655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-05 Score=71.97 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=58.2
Q ss_pred HhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-------C-CCCcccHHHHHHHHHhcC
Q 014978 24 QALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC-G-------F-LKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~ 94 (415)
.-|+.|.|.+-.+.+. +..+|..+.+.|.+..+.+-|.-.+-.|... | . .|+ ..-....-.....|
T Consensus 740 tiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 3445555544443332 3345566666666655555555444444321 0 0 011 11111222233445
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
.+++|..+|.+-++ |..|=..|-..|.|++|.++-+.=-+.. =..||......+-..++.+.|++.|++
T Consensus 815 MlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 55555555555442 2333334445555555555543221111 112344444444445555555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-06 Score=64.96 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=134.7
Q ss_pred cCcHHHHHHHHHHHHhc---C-CCCCcc-cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 58 NKKSAEAEALMEKMSEC---G-FLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...+|.+...-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45777888888777642 3 334433 355566677788899999999999888876666666555666667888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
|.++++.+.+.+ +.|..++-.-+-..-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988875 556667776666666777777888888887776 567888888888889888999998888888877
Q ss_pred cccccChhhHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 014978 213 LFAKMNDAEYTCVISSLVK---LGEFEKAENIYDEWESIS 249 (415)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 249 (415)
..+ .+...+..+...+.- ..+...+.+.|.+..+..
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 133344444444332 345666777777776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-06 Score=80.79 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=129.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
....+++.-...... ..+.++..+..|..+..+.|.+++|..+++...+..|.+......++.++.+.+++++|...++
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 66 HKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333444433333333 3456688899999999999999999999999999899999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 139 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
+..+.. +.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 145 ~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 145 LYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999885 5566788889999999999999999999999843 445788999999999999999999999999876
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-07 Score=68.56 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554442 3344444555555555555555555555555432 334444445555555555
Q ss_pred ChHHHHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMS 212 (415)
Q Consensus 199 ~~~~a~~~~~~~~~ 212 (415)
++++|+..|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00012 Score=69.35 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=170.3
Q ss_pred cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014978 80 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
+..|..+..+-.+.|.+.+|++-|-+. .|...|..++....+.|.|++-.+++...++..-.|... +.|+-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 356777777777777777777766443 366677777888888888888777777766665445443 4577777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHH
Q 014978 160 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 239 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 239 (415)
++.++..+..+++ ..|+......+..-|...+.++.|.-+|... ..|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 7777776655544 2466666777777777777777776655432 33666777777777777776
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 014978 240 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
..-++ ..+..+|-..-.+|...+.+..| +|...++.....-..-++.-|-..|-+++.+.+++..+..
T Consensus 1241 D~aRK------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL- 1308 (1666)
T KOG0985|consen 1241 DAARK------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL- 1308 (1666)
T ss_pred HHhhh------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-
Confidence 55443 23566777776777666555433 3334444445556677888888888888888888776441
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC-------CHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA-GHV-------STEIYNSLLRTYAKAGKMPLIIVERMQK 386 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 386 (415)
-+.....|+.|.-.|++- ++++..+.++..-.. +++ ....|+-|+..|.+-..++-+.+..|..
T Consensus 1309 --ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h 1380 (1666)
T KOG0985|consen 1309 --ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEH 1380 (1666)
T ss_pred --hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhC
Confidence 122334566666666553 355554444433221 111 2356888888888877776555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-05 Score=74.78 Aligned_cols=351 Identities=12% Similarity=0.022 Sum_probs=195.2
Q ss_pred hhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 25 ALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
..+...|...|=+..+..++ ..+|..|...|....+...|.+.|++..+.+ ..+...+......|++..+++.|..+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33466677777666665443 4678888888888778888888888888765 346677777888888888888888874
Q ss_pred HHHhhcCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 104 QELKKNTSPD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 104 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
-...+..+.- ...|....-.|...++...+..-|+...+.. +.|...|..++.+|.+.|++..|.++|.++... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 4433322222 2234445556677788888888888877764 456668888888888888888888888887764 3
Q ss_pred CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHccc------ccChhhHHHHHHHHHhcCChHHHHHHHHH-------HHh
Q 014978 182 KNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFA------KMNDAEYTCVISSLVKLGEFEKAENIYDE-------WES 247 (415)
Q Consensus 182 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~ 247 (415)
|+.. .-.......+..|.+.+++..+........ ..-..++..+...+...|-...+..++++ ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4322 111222334567788888777776654311 11111222222222222322222222222 221
Q ss_pred ccCCCCCchHHHHHHH-------------------H----HhcCcH---H---HHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 014978 248 ISGTGDPRVPNILLAA-------------------Y----INRNQL---E---MAESFYNRLVTKGIKPCYTTWELLTWG 298 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~-------------------~----~~~g~~---~---~a~~~~~~~~~~~~~p~~~~~~~l~~~ 298 (415)
+....+...|-.+-++ + -..+.. + .+.+.+-.-.+ ...+..+|..++..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 1111111112111111 1 111111 1 01111111111 11223445555544
Q ss_pred HHh--------cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 299 YLK--------KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 299 ~~~--------~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
|.+ ..+...|+..+...++. -..+..+|+.|... ...|++.-|...|-+-+...+....+|..+...+
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeE
Confidence 443 12234677777777762 33455666666554 5556777777777777777777777777777777
Q ss_pred HhcCCC--cHHHHHHHH
Q 014978 371 AKAGKM--PLIIVERMQ 385 (415)
Q Consensus 371 ~~~g~~--a~~~~~~m~ 385 (415)
.+..++ |...|...+
T Consensus 861 l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred EecccHHHhhHHHHhhh
Confidence 766666 344444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.6e-07 Score=76.61 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=66.0
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
..+...|+++.|+..++.+...- +.|+..+......+.+.++.++|.+.++++....|......-.+..++.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34445566666666666655431 22333333344555666666666666666555544445555555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
|..+++...... +.|+..|..|..+|...|+..++.....+.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666555442 445556666666666666655555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=53.55 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=18.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 284 GIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 284 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-05 Score=69.38 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYT 195 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 195 (415)
.....-.+...|++++|+..++.++.. .+-|+.........+.+.++.++|.+.++.+... .|+ ....-.+..++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333344445666777777777776655 2344445555666677777777777777777665 343 445556667777
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
+.|++.+|+.+++......+. |...|..|.++|...|+..++..-..+. |...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHH
Confidence 777777777777766655333 5666777777777777776666655543 223456666666
Q ss_pred HHHHHHhC
Q 014978 276 FYNRLVTK 283 (415)
Q Consensus 276 ~~~~~~~~ 283 (415)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=64.21 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=51.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+......+...+...|++++|.+.++.+...+ +.+...+..+..++.+.|++++|...++...+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3344444455555555555555555555555443 3344455555555555555555555555554442 3334444445
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
...+...|++++|...|+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-05 Score=61.01 Aligned_cols=237 Identities=19% Similarity=0.115 Sum_probs=123.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
+-+.-.|++..++..-+...... -++..-..+.++|...|++..... .++....|.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchhHH
Confidence 44444577777766555544321 233333344566666665544332 2222223344444444444444444333
Q ss_pred HH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AE-KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
-. .+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333444443333333334444555677777777777666521 22222222344455666777777777776
Q ss_pred HcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 014978 212 SLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 287 (415)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 287 (415)
+.. +..|.+.|..++.+ .+.+.+|.-+|+++.+. .+|+..+.+..+.++...|++++|..+++..+.+...
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 532 44455545444432 34566677777776653 3556666666666666677777777777766665422
Q ss_pred CHhHHHHHHHHHHhcCCH
Q 014978 288 CYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~ 305 (415)
++.+...++.+-...|..
T Consensus 240 dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKD 257 (299)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 455555555444444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=67.17 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
...+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+..+.+...+..+..++...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444444455555555554444432 223344444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhC
Q 014978 128 NDKETAEKAFLELKKT 143 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~ 143 (415)
|+++.|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-05 Score=71.95 Aligned_cols=348 Identities=11% Similarity=-0.000 Sum_probs=210.8
Q ss_pred HHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCCc
Q 014978 19 RVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGF-LKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 19 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 96 (415)
|.-|...-+...|.+-|+.+-+..+ +..++......|+...+++.|..+.-..-+... ..-...|....-.|.+.++.
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 4444555588889999999888755 678899999999999999999998433322210 00112344455567788999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
..|+.-|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|+.. .---..-.-+..|.+.+|+..+...
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999998876 44432 2122333456678999999888877
Q ss_pred Hhc------CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH-------HHHcccccChhhHHHHHHHH-------------
Q 014978 176 EKR------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK-------MMSLFAKMNDAEYTCVISSL------------- 229 (415)
Q Consensus 176 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~------------- 229 (415)
... +...-..++..+...+...|-..++..++++ ........+...|-.+-.+|
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 542 1111122222222222222322333333322 22221111222222222221
Q ss_pred ----------HhcCCh---H---HHHHHHHHHHhccCCCCCchHHHHHHHHHh----c----CcHHHHHHHHHHHHhCCC
Q 014978 230 ----------VKLGEF---E---KAENIYDEWESISGTGDPRVPNILLAAYIN----R----NQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 230 ----------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~~~~~~~~~~~ 285 (415)
...+.. + -+.+.+-.-. ....+..+|..+...|.+ . .+...|...+...++..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~- 813 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC- 813 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-
Confidence 111111 1 0001110000 112234445444444433 1 22346777777776542
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHH
Q 014978 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 365 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (415)
..+..+|+.|.-. ...|++.-+...|-+... ..+....+|..+...+....+++.|...|.......|.+...|..
T Consensus 814 ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 814 ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 2356677766555 666888888888877665 345567788888888899999999999999998888877666654
Q ss_pred HHHHHHhcCC
Q 014978 366 LLRTYAKAGK 375 (415)
Q Consensus 366 l~~~~~~~g~ 375 (415)
....-...|+
T Consensus 890 ~Ali~eavG~ 899 (1238)
T KOG1127|consen 890 EALIPEAVGR 899 (1238)
T ss_pred HHHhHHHHHH
Confidence 4444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-05 Score=69.61 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
..+.|.+|+.+++.+.+.. ...--|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3444444444444444331 122234444555555555555555543321 12333445555555555555
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 285 (415)
+-++.. |+......|..-..-+-..|++.+|.+++-.+. .|+ ..|.+|-+.|..+...++..+-....
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh-
Confidence 444431 222233334444444444555555555443221 222 13445555555555555444332111
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 286 KPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
-..|...+..-+-..|++..|..-|-++
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1224444555555566666666655544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00041 Score=61.31 Aligned_cols=357 Identities=13% Similarity=0.085 Sum_probs=202.3
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
-|..+|+.||+-+... .++++.+.++++... ++-.+..|..-+..-...++++.+..+|.+.... .-+...|...++
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHH
Confidence 3899999999988766 999999999999875 4557788999999999999999999999997654 345777777776
Q ss_pred HHHhcC-CHH----HHHHHHHHHH-hCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 123 ACASQN-DKE----TAEKAFLELK-KTKIDPDW-ISYSTLTSL---------YIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 123 ~~~~~~-~~~----~a~~~~~~~~-~~g~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
.-.+.+ +.. ...+.|+-.. +.|+.+-. ..|+..+.. |....+.+...++++++...-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 554432 222 2333444333 34443322 244444433 2333455666777777764311100111
Q ss_pred HH------HHHHHH-------HcCCChHHHHHHHHHHHHc--ccccChh---------------hHHHHHH---------
Q 014978 187 YS------SLLSLY-------TNMGYKDEVLRIWKKMMSL--FAKMNDA---------------EYTCVIS--------- 227 (415)
Q Consensus 187 ~~------~l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~~--------- 227 (415)
|+ .=|+.. -+..++..|.+++++.... |..-... .|..+|.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 111100 1222344455555444321 1100000 0111111
Q ss_pred ----------------------------------------HHHhcCC-------hHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 228 ----------------------------------------SLVKLGE-------FEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 228 ----------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
.+...|+ -+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 12222233322221111122222222
Q ss_pred HHHHHhc---CcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCC-CHHHHHHHHHH
Q 014978 261 LAAYINR---NQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 335 (415)
Q Consensus 261 ~~~~~~~---g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 335 (415)
...--.. +..+.....++++...- +.| .-+|..++..-.+...+..|..+|.++.+ .+..+ .+...++++.-
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARE--DKRTRHHVFVAAALMEY 411 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhh--ccCCcchhhHHHHHHHH
Confidence 2111111 12444555566555422 233 34677788888888889999999999988 44455 66777777776
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHH--H-HHHHHhccCC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET--Q-KVLKITSEMP 406 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t--~-~~l~~~~~~~ 406 (415)
++ .++.+.|.++|+.-.+.-..++.--...+.-+.+-++- +..+|++....++.|+..- | ++|.-=++.+
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 65 57899999999988887666666666677777777665 6889999988877766543 4 4555444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.8e-05 Score=58.94 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=141.3
Q ss_pred cCCHHHHHHHHHHHHh---cC-CCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 162 MELPEKAATTLKEMEK---RT-CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
..+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+....+. +..+-..-.--+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 4677888888888764 23 4455443 556667777889999999999998887522 3333222233356688999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
+|.++++.+.+.+ +.|..++-.=+...-..|+.-+|.+-+....+. +..|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998876 557777776666777788888888888888775 34588999999999999999999999999987
Q ss_pred hcccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCHHH
Q 014978 317 GSVRKWVPDHRLITAAYNKLEEQG---DIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 317 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
- .-+.++.-+..+...+.-.| +.+.|.+.|.+..+..+.+...
T Consensus 182 l---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 L---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred H---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 6 23345555566666554443 5678888999998877755433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00024 Score=65.10 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=110.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.|.-+.+.|+++.|+..|-++.. .-.-+.+-.....+.+|+.+++.+.... .-..-|..+..-|+..|+++
T Consensus 712 wg~hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHH
Confidence 34455667777777777654432 1233455556677777777777776543 22334566667777777777
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|.++|.+.. .++-.|..|.+.|+|+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 7777775542 34556677777777777777665543 223444455555555566666666666654332
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
.|+ ..|..|-+.|..+..+++.++-... .-..|...+..-+...|+...|...|-+
T Consensus 852 ---~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 852 ---EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ---Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 233 2345566666666666555443211 1122334444445555555555554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-05 Score=71.08 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=94.9
Q ss_pred CcchHHHHHH--HHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---------CCC
Q 014978 44 GPDTCSALLH--SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---------TSP 112 (415)
Q Consensus 44 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 112 (415)
|..+-..+++ .|...|+.+.|.+-++.+.. ...|..+...|.+..+++-|.-.+..|... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 36677888888877766554 346888888888888888887777665421 111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+..+=..........|.+++|+.+|++-.+. ..|=..|...|.+++|+++-+.--+.. =..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 1123333344455678888888888776653 344556667788888887765432221 2345666666
Q ss_pred HHHcCCChHHHHHHHHHH
Q 014978 193 LYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~ 210 (415)
-+-..++.+.|++.|++.
T Consensus 867 ~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 666777888888888775
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.6e-06 Score=70.91 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=63.3
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..... +.+..........+.+.++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~-pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD-PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 334444555566666666655432 22 23335555555555556666665555442 334445555555555666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
.|+++.+++.... |-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666665541 223445666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=60.37 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 014978 122 AACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333334444444444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0022 Score=60.26 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 293 ELLTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 293 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
+.|+..+.+.++.. +|+-+++.... .-+.|..+-..++..|+-.|-+..|...|+.+--..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 46677788887765 45556666554 3344566667788999999999999999887654433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=60.83 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCCcCcHHHHHHHHhhcCC-CC--HhHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELKKNTS-PD--VVTYNLWLA 122 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~l~~ 122 (415)
..++..+ ..++...+.+.++.+.+.. +.++. ..-.+...+...|++++|...|+.+....+ ++ ......+..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333333 3666666666666666643 12211 122233556667777777777777665531 11 123444566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++...|++++|+..++..... ......+....++|.+.|+.++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777777777777654332 234445566677777777777777776653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-05 Score=55.99 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIK-P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
++..++..+.+.|++++|.+.|..+...... | ....+..+...+.+.|+++.|...|+.+.....+.+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666666677777766666653211 0 1234455666666777777777777766652111111234556666
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
.++...|++++|...++++.+..|.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 666677777777777777776666554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=70.25 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=108.7
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+..|.+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344567777778899999999999999865 44 45567788888888899999999988878888888998999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+.++++.|+.+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999999873 344459999999999999999999999988643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=47.44 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 80 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (415)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=58.37 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHH
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHML 87 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 87 (415)
+..+..+.+.|++++|.+.|+.+....|+ ..++..+..++.+.|++++|...|+.+.... |+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHH
Confidence 33444444445555555555444443332 1233344444444455555555554444321 11 22233334
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.++.+.|+.++|...++++.+..|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444444444444443333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=60.21 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcc-h---HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPD-T---CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
.+..+....+.|++++|++.|+.+....|+.. + .-.++.++.+.+++++|...+++..+.........|...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 45566666667777777777777666655332 1 1344566667777777777777766543111112232333332
Q ss_pred Hh--cC---------------C---cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 014978 91 IS--NG---------------Q---LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 150 (415)
Q Consensus 91 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 150 (415)
+. .+ + ..+|+..|+.+.+..|.+ .-..+|...+..+... =..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S--------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS--------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC--------------hhHHHHHHHHHHHHHH----HHH
Confidence 21 00 0 112333444444333322 2223333333322211 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124667788889998888888888875 112234456677888888899988888776554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0027 Score=55.15 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-c------hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-D------TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH 85 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (415)
.....+|..+.+.+++.+|.++|.++.+...+. . .-+.++++|. .++.+.....+....+.- | ...|-.
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~ 82 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLP 82 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHH
Confidence 345678889999999999999999987763322 2 2245566665 355666666666665542 3 334545
Q ss_pred HHHHH--HhcCCcCcHHHHHHHHhhcC----CC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----
Q 014978 86 MLNLY--ISNGQLDKVPQMLQELKKNT----SP-----------DVVTYNLWLAACASQNDKETAEKAFLELKKTK---- 144 (415)
Q Consensus 86 l~~~~--~~~~~~~~a~~~~~~~~~~~----~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---- 144 (415)
+..++ -+.+.+.+|.+.+....... +| |...=+..+.++...|.+.++..+++++...=
T Consensus 83 LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE 162 (549)
T PF07079_consen 83 LFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRE 162 (549)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh
Confidence 54443 35677778877776654431 11 11123456677778888888888777776442
Q ss_pred CCCCHHHHHHHHHHHHh
Q 014978 145 IDPDWISYSTLTSLYIK 161 (415)
Q Consensus 145 ~~~~~~~~~~l~~~~~~ 161 (415)
..-+..+|+.++-.+++
T Consensus 163 ~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 163 CEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hcccHHHHHHHHHHHhH
Confidence 23566667664444433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=46.10 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=30.8
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 78 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (415)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-06 Score=46.49 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444555555555555555555544444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=45.48 Aligned_cols=32 Identities=41% Similarity=0.661 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDP 147 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (415)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-05 Score=66.83 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh
Q 014978 144 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 221 (415)
Q Consensus 144 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (415)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777787777777654 1111223445778888888888888888887777788888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
++.|+..+.+.|++..|.++...|.......+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777666555666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=52.83 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 014978 121 LAACASQNDKETAEKAFLE 139 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~ 139 (415)
..++...+++++|.+.++.
T Consensus 41 ~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 41 AAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-05 Score=53.70 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++......+.+..++..+..++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4445555566666666666666665543 222344555556666666666666666666555455555666666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 014978 128 NDKETAEKAFLELKKT 143 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~ 143 (415)
|+++.|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00086 Score=57.34 Aligned_cols=207 Identities=10% Similarity=-0.024 Sum_probs=127.7
Q ss_pred HHHHHHHH-HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch------
Q 014978 184 RVAYSSLL-SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV------ 256 (415)
Q Consensus 184 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------ 256 (415)
-.+|..+- .++...|+.++|...--...+.... +......-..++...++.+.+...|++....+ |+-..
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhh
Confidence 34444332 4556678888887776666554321 22222222233445677888888888776653 22211
Q ss_pred -------HHHHHHHHHhcCcHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 257 -------PNILLAAYINRNQLEMAESFYNRLVTK---GIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 257 -------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
+..=..-..+.|++..|.+.|.+.+.. ++.|+...|........+.|+.++|+.-.+++.+ +.|..
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~sy 320 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSY 320 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHH
Confidence 111123456778999999999988753 3355666777777788889999999999988876 22221
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCc-HHHHHHHHhCCCCCCHHHHH
Q 014978 327 -RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKMP-LIIVERMQKDNVQMDAETQK 397 (415)
Q Consensus 327 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~a-~~~~~~m~~~~~~p~~~t~~ 397 (415)
..+..-..++...+++++|.+-++...+.... ...++.....++-++.+.+ ..++.--+.....|....|+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYR 395 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHH
Confidence 22333334566778899999999988876554 4466777777777666654 55555444444445555553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=68.14 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
....+..+...|++++|++.|+.+....| +...|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34556667777777777777777777655 45666777777777777777777777777654 33455666666777777
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
|++++|+..|++..+..|.+......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 77777777777776655555444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=64.85 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (415)
+.+......+++.+....+++.+..++.+.+.. ...-..|..++++.|...|..+.++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555566666666666666666666543 11122344566777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (415)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666555455555555555444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-05 Score=62.88 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
+.+.+++.+|+..|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+......|....+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 444455555555555555442 2234444444455555555555555555544444444455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 014978 135 KAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~ 153 (415)
+.|++.++. .|+..+|-
T Consensus 170 ~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHhhhcc--CCCcHHHH
Confidence 555555443 34444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0017 Score=53.56 Aligned_cols=180 Identities=12% Similarity=0.040 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
.....+.+.|++++|.+.|+++.... +-+... .-.++.++.+.+++++|...+++..+..+.....-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445566777777777777777652 112222 13455677777788888888877777644333333333333322
Q ss_pred h--c---------------CCh---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh
Q 014978 231 K--L---------------GEF---EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290 (415)
Q Consensus 231 ~--~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 290 (415)
. . .|. ..|...|+.+.+. |-...-..+|...+..+... + -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-l--a~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-L--AKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-H--HHH
Confidence 1 1 111 2333444444433 22222233444433333221 0 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
-..+..-|.+.|.+..|+.-++.+++.-.+.+........++.+|...|..++|..+...+.
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11445568888899999999999888545555566777788888999999999888776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=61.28 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=88.1
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 357777777777778888888888887543 2234444444444223 45556688888887777777888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888765 33332 36777777777778888777777777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=55.72 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=10.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
.+...+.+.|++++|.++|++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=63.14 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=45.8
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 133 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (415)
.+...|+++.|++.|++.++.+ +.+...|..+..++...|++++|+..++++.+..+.+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555555443 223344444445555555555555555555544444555555555555555555555
Q ss_pred HHHHHHHHhC
Q 014978 134 EKAFLELKKT 143 (415)
Q Consensus 134 ~~~~~~~~~~ 143 (415)
...|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00014 Score=50.08 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKME--------LPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
.|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666555432 122344555555555555555555555
Q ss_pred HHHHH
Q 014978 191 LSLYT 195 (415)
Q Consensus 191 ~~~~~ 195 (415)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.7e-05 Score=56.14 Aligned_cols=99 Identities=8% Similarity=-0.108 Sum_probs=76.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+....-.+...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|+..|.......+.|..++-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445556666777888888888888887765 33556667777778888888888888888777777788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 014978 124 CASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=53.77 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=59.3
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (415)
+...+...|++++|..+|+.+....+.+...|-.|..++-..|++++|+..|......+ +.|+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 34445556667777777766666566666666666666666677777777776666654 34555666666666666666
Q ss_pred HHHHHHHHHHHhc
Q 014978 166 EKAATTLKEMEKR 178 (415)
Q Consensus 166 ~~a~~~~~~~~~~ 178 (415)
+.|.+.|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0012 Score=50.16 Aligned_cols=157 Identities=9% Similarity=-0.061 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhc
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 127 (415)
..+..+..+.=+++...+-..+-.. ..|++..--.|..++.+.|+..+|...|++...+ +..|....-.+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 3444555555566665544443333 2466666667778888888888888888887777 777778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
+++..|...++.+-+... .-++.+.-.+.+.+...|.+.+|...|+..... .|+...-......+.+.|+.+++..-
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 888888888888776531 112234455677788888888888888888775 45544433344556666766555444
Q ss_pred HHH
Q 014978 207 WKK 209 (415)
Q Consensus 207 ~~~ 209 (415)
+..
T Consensus 216 ~~~ 218 (251)
T COG4700 216 YVA 218 (251)
T ss_pred HHH
Confidence 333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=49.90 Aligned_cols=59 Identities=20% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG 75 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 75 (415)
..+..+.+.|++++|++.|+.+....| ++.++..+..++...|++++|...|+++.+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467778888899999999988888877 56788888888888999999998888887753
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00035 Score=54.61 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 299 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 299 (415)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+.+..+... -+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44444455555555555555555544322211 13444455555555555555555555554321 1233344444444
Q ss_pred HhcCCHHH
Q 014978 300 LKKGQMEK 307 (415)
Q Consensus 300 ~~~~~~~~ 307 (415)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 44444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0049 Score=52.97 Aligned_cols=265 Identities=11% Similarity=-0.003 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLY 90 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (415)
.-....+..+.+..++..|+..+..+.+..|+ ..-|..-+..+...|++++|.--.+.-.+.. |. ...+...-+++
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 33455666778888999999999998888774 4455566667777788888876665554421 21 12222222333
Q ss_pred HhcCCcCcHHHHHH---------------HHhhc--CCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 014978 91 ISNGQLDKVPQMLQ---------------ELKKN--TSPDVVTYNLW-LAACASQNDKETAEKAFLELKKTKIDPDWISY 152 (415)
Q Consensus 91 ~~~~~~~~a~~~~~---------------~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 152 (415)
...++..+|.+.++ .+... .+|.-.+|..+ ..++.-.|++++|.+.--...+.. ..+....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHH
Confidence 33333333332222 22111 22333445444 356777889999888877777663 2233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHcCCChHHHHHHHHHHHHcc---cc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA-------------YSSLLSLYTNMGYKDEVLRIWKKMMSLF---AK 216 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~ 216 (415)
-.=..++.-.++.+.+...|++....+ |+... +..-..-..+.|.+..|.+.|.+.+... ..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 222334455788899999999888753 44322 2222333467788889999988887743 23
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
|+...|........+.|+.++|+.--+...+.+.. -...+..-..++...+++++|.+-++...+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445666666777888888888887776653210 1122233334455567888888888877654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00041 Score=54.20 Aligned_cols=92 Identities=15% Similarity=-0.007 Sum_probs=65.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 121 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 121 (415)
....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+..+..+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 345677777788888888888888888876532221 246777777888888888888888887776666777777777
Q ss_pred HHHHhcCCHHHHHH
Q 014978 122 AACASQNDKETAEK 135 (415)
Q Consensus 122 ~~~~~~~~~~~a~~ 135 (415)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=49.55 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcccccChhhHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMG--------YKDEVLRIWKKMMSLFAKMNDAEYT 223 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (415)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|..|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666666888888889999988888 788888988887776542 2235667777777777888888888
Q ss_pred HHHHHHHh
Q 014978 224 CVISSLVK 231 (415)
Q Consensus 224 ~l~~~~~~ 231 (415)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=41.98 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.0
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0097 Score=50.85 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=132.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH--HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNL--YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 135 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (415)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|......-.--...|.-..-+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555555554443321 22333333333322 2335666666666666653211011112222222334566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHH---HcCCChHHHHHHHHH
Q 014978 136 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVA--YSSLLSLY---TNMGYKDEVLRIWKK 209 (415)
Q Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~ 209 (415)
+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .-..++..|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 655554431 2223355556666666666666666665544321 2222211 11111111 111234455554444
Q ss_pred HHHcccccChh-hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCC
Q 014978 210 MMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKP 287 (415)
Q Consensus 210 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p 287 (415)
..+ ..|+.. .-..-..++.+.|+..++-.+++.+-+..+.| .++. +..+.+.|+. +..-+++... ..++|
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGDT--ALDRLKRAKKLESLKP 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCc
Confidence 443 333433 22233455667777777777777766653333 2222 2223344432 2222222211 01233
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHc
Q 014978 288 -CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 288 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 355 (415)
+..+...+..+-...|++..|..--+.+.. ..|....|..|...-.. .|+-.++...+.+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r----~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR----EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh----hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 344555566666667777766666555544 45666666666665433 37777777777776664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=59.60 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
|..+++..-+.+..+.|..+|.+..+....+...|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 44444444444444455555555443322233333333333222 33333455555544443 23344444444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555444433 11111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=53.86 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=30.7
Q ss_pred CCcCcHHHHHHHHhhcCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 171 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (415)
|+++.|+.+++++.+..+. +...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443221 222333344444445555555444444 1111 11122222334444445555555444
Q ss_pred HH
Q 014978 172 LK 173 (415)
Q Consensus 172 ~~ 173 (415)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0011 Score=60.92 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444333344455555555555555432 3444455555555555555555555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0011 Score=61.09 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
+...|..+.-.....|++++|...++++...+ |+...|..+...+...|++++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555444445566666666666655542 45555555566666666666666666655553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.9e-05 Score=51.72 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443210 1222233344444444555555444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=51.54 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDP--DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
...|..++..+...|++++|...|++.......+ ...++..+..++...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666666677777777776665442111 12356666666666677777777666666542 22233344444
Q ss_pred HHHH
Q 014978 192 SLYT 195 (415)
Q Consensus 192 ~~~~ 195 (415)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=41.47 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=54.90 Aligned_cols=81 Identities=14% Similarity=-0.087 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK--CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
...|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++.....+....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455566666666677777777777665442111 12345556666666666666666666665544444455555555
Q ss_pred HHH
Q 014978 123 ACA 125 (415)
Q Consensus 123 ~~~ 125 (415)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00049 Score=56.62 Aligned_cols=114 Identities=10% Similarity=-0.047 Sum_probs=89.8
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN---DKETAEKAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (415)
+-|...|-.|...|...|+++.|..-|.+..+..+++...+..+..++..+. .-.++..+|+++.... +.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 5578889999999999999999999999988888888888888887776554 3467888999998874 45666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
.|...+...|++.+|...++.|.+.. +|+ ..+..++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHH
Confidence 88888999999999999999998873 333 344455443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.007 Score=51.55 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHHHcccccC-----hhh
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEK----RTCRKN--RVAYSSLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAE 221 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~ 221 (415)
....+|.+. ++++|.+.+++... .| .|+ ...+..+...|... |++++|++.|.+..+.-..-+ ...
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 333333333 66666666655543 22 122 23455666777777 899999999988876421111 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCC--HhH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNRLVTKG--IKPC--YTT 291 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~ 291 (415)
+..+...+.+.|++++|..+|+++.......+.. .+...+-++...|++..|.+.+++..... +..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 6677888899999999999999887653322211 12223345556788888888888887542 2111 224
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHh
Q 014978 292 WELLTWGYLK--KGQMEKVLECFKKA 315 (415)
Q Consensus 292 ~~~l~~~~~~--~~~~~~a~~~~~~~ 315 (415)
...|+.+|-. ...++.++.-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4455555532 22344555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=47.57 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---CHhHHHHHHHHHHhc
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DVVTYNLWLAACASQ 127 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 127 (415)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334444555555555555555443222 122333334444455555555555544433222 222222233344444
Q ss_pred CCHHHHHHHHHH
Q 014978 128 NDKETAEKAFLE 139 (415)
Q Consensus 128 ~~~~~a~~~~~~ 139 (415)
|+.++|...+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 555555444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.2e-05 Score=48.73 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22333333444444444444444444444443
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00034 Score=57.28 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=119.9
Q ss_pred hHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCc-------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 28 TRARENFFENLPDKMR---GPDTCSALLHSYVQNKK-------SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.+.|.+-++..-...+ +......++.++....+ ..+....-++++..| .-+.+.+++.
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eG------------N~~m~~~~Y~ 98 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAESLKNEG------------NKLMKNKDYQ 98 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHHHHHHH------------HHHHHhhhHH
Confidence 4455555555444322 23334445555544433 123555555555554 3456789999
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
+|+..|.+..+..|.|.+.|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|.+.|++..+
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999988763 22345899999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHH-HHcCCChH---HHHHHHHHHHHcccccC
Q 014978 178 RTCRKNRVAYSSLLSL-YTNMGYKD---EVLRIWKKMMSLFAKMN 218 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~-~~~~~~~~---~a~~~~~~~~~~~~~~~ 218 (415)
. .|+-.+|-.=+.. -.+.++.. .+..-++.....|..|+
T Consensus 178 l--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 178 L--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred c--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 5 6766666554443 33344443 33333443333344344
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.01 Score=48.08 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-C---cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR-G---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (415)
....+..++...+.|++++|.+.|+.+..+.| + ..+--.++.++.+.+++++|+..+++....-.......|...|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 44578899999999999999999999988766 3 3455566778889999999999999988753222334566666
Q ss_pred HHHHh
Q 014978 88 NLYIS 92 (415)
Q Consensus 88 ~~~~~ 92 (415)
.+++.
T Consensus 114 kgLs~ 118 (254)
T COG4105 114 KGLSY 118 (254)
T ss_pred HHHHH
Confidence 66553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00082 Score=52.63 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 111 SPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4566677777777654 46777778888888888888888888888887654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0031 Score=45.26 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++......+-.-+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666655432 2244455566666666666666666665520000001222222334555
Q ss_pred HcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 338 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
..|+.++|...+-...... ...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~---~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET---LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 6666666666655444321 124554444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.02 Score=49.09 Aligned_cols=292 Identities=13% Similarity=0.023 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcC-CCCcchHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCccc--HHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDK-MRGPDTCSALLHS--YVQNKKSAEAEALMEKMSECGFLKCPLP--YNHML 87 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 87 (415)
.+.+..|+..+-+|+-..|.++-.+.... ..|....-.|+.+ -.-.|+++.|.+-|+-|... |.... ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 45678888899999999999998776543 2354444444443 34579999999999999863 43322 23333
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWIS--YSTLTSLYIK--- 161 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~--~~~l~~~~~~--- 161 (415)
-...+.|..+.|..+-+.....-|.-...+...+...+..|+|+.|+++++.-+... +.++..- -..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 344568889999999888877767777889999999999999999999999877554 3444432 1223322111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAY-SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
..+...|...-.+..+ +.|+..-- ..-..++.+.|+..++-.+++.+.+..+.|+.. . +....+.|+ .+..
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~d 313 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALD 313 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHH
Confidence 2345566666555554 35664432 234578889999999999999998876666532 1 122344454 3333
Q ss_pred HHHHHHh-ccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhHh
Q 014978 241 IYDEWES-ISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 241 ~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 317 (415)
-++...+ ..++| +......+..+-...|++..|..--+..... .|....|..|...-. ..|+-.++...+.+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3443322 11233 5566677788888899999888777776653 677778877776554 45999999999998887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0026 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSEC 74 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 74 (415)
..+..|....+.|++.+|++.|+.+....|+ +.+.-.++.++.+.|+++.|...++.+.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678888889999999999999988877653 345667788888899999999999988775
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0027 Score=52.45 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=93.7
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC
Q 014978 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKN 183 (415)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 183 (415)
....|.|...|-.|..+|...|+++.|...|.+..+.. +++...+..+..++.... ...++..+|+++...+ +.|
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ 226 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PAN 226 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Ccc
Confidence 33479999999999999999999999999999999874 667777777777766543 3468899999999874 456
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
+.+...+...+...|++.+|...|+.|.+..+ ....+..++.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp--~~~~rr~~ie 268 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP--ADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CCCchHHHHH
Confidence 77777888999999999999999999999743 3333444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.006 Score=49.15 Aligned_cols=128 Identities=10% Similarity=0.092 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH-----HH
Q 014978 154 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI-----SS 228 (415)
Q Consensus 154 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~ 228 (415)
.++.++.-.|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3344444444444445555555544333344444455555555555555555555444332222222222221 12
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 229 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+..+.+.+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344444444444444433 22333333322233334445555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=49.83 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVLK 400 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l~ 400 (415)
....++..+...|+++.|..+++.+....|.+...|..++.+|...|+. |...|..+. +.|+.|+..|-.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR 143 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999998 466666553 379999999987765
Q ss_pred H
Q 014978 401 I 401 (415)
Q Consensus 401 ~ 401 (415)
.
T Consensus 144 ~ 144 (146)
T PF03704_consen 144 E 144 (146)
T ss_dssp H
T ss_pred H
Confidence 4
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=44.84 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
..+.+.|++++|...|+++++. .+-+...+..+..++...|++++|...|+++.+..|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444555555555555555441 122334444555555555555555555555554444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=45.92 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
..|++++|+++|+++.. ..+-+...+..+..+|.+.|++++|..+++++....+.
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34445555555555444 12224444444445555555555555555555444444
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=53.86 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
|...+..+.+.|++++|...|+.+++.. |+. ..+-.+...|...|++++|...|+.+++....-+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4443444455677777777777777642 332 3555666777777777777777777776322222234455555
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
...+...|+.+.|..+|+.+.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667777778888888777777666543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=56.64 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----hccCC-CCCchHHHHHHHHHhcCcHHHHHHHHHHHH----hCCC-CCCHh
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWE----SISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLV----TKGI-KPCYT 290 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~~ 290 (415)
.|..|...|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666677777766655322 12211 123355566677777777777777666532 2221 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcc---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
+.-+|...|.-..++++|+.++.+-+... ....-....+.+|..++...|..+.|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566667777777777777766543311 11122345667777777777777777777665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00036 Score=44.91 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcC
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAG 356 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 356 (415)
...|..+...+...|++++|+..|+++++. .+.+...+..+..++...| ++++|++.+++..+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 345555566666666666666666666551 1223455555556666666 4666666666655543
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.022 Score=46.07 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV-----AYSSL 190 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l 190 (415)
..+.++.++.-.|.+.-....+.+.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|.. .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555566666666666666655444455555666666666666666666666554332222222 22222
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
...+.-.+++..|...+++....+.. +....|.-.-+..-.|+...|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455666666666666554322 3333333333444456666666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.012 Score=47.37 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 156 TSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
...+...|++++|.+.|+.+...... --....-.++.++.+.|+++.|...++..++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445556666666666665543110 012223344555556666666666666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.017 Score=44.09 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=74.7
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHHH
Q 014978 216 KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWEL 294 (415)
Q Consensus 216 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ 294 (415)
.|+...-..|..+....|+..+|...|++...--...|....-.+.++....+++..|...++++.+.+.. -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566666666666666666666655444445555566666666666666666666666654310 02223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 352 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (415)
+...+...|.+.+|..-|+.+.+ .-|+...-......+.++|+..++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55566666667667776666665 3455444333344455666555554433333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=51.38 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 146 DPDWISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
..|-.+|..+++.|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 45777888888888754 6778888888999999999999999999998764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00056 Score=44.00 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKM 210 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 210 (415)
|..+...+...|++++|+..|.+..+.. +.+...|..+..++...| ++++|++.+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333344444444444444444443331 222333333334444443 344444444433
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=54.94 Aligned_cols=265 Identities=16% Similarity=0.032 Sum_probs=162.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-C----cchHHHHHHHHHhcCcHHHHHHHHHHH--Hh--cCCC-CCcccHHHH
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-G----PDTCSALLHSYVQNKKSAEAEALMEKM--SE--CGFL-KCPLPYNHM 86 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l 86 (415)
..|-.+.+.|+.+..+.+|+.+.+.+. | ..+|+.|..+|.-.+++++|++.-..= +. .|-+ -...+-..|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345567999999999999999988753 2 346788888888899999998864321 11 1101 022233445
Q ss_pred HHHHHhcCCcCcHHHHHHHHh----hc--CCCCHhHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELK----KN--TSPDVVTYNLWLAACASQND--------------------KETAEKAFLEL 140 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 140 (415)
...+--.|.+++|+-...+-. +. -.....++..+...|...|+ ++.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 555666778888766544311 11 11233455556666655442 23344444332
Q ss_pred H----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 141 K----KTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEME----KRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 141 ~----~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
. +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 2 1110 0112345666677777789999887654422 22211 23456778888899999999999998875
Q ss_pred HHcccc-----cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 211 MSLFAK-----MNDAEYTCVISSLVKLGEFEKAENIYDEWESI-----SGTGDPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 211 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
...-+. ....+..+|...|.-..++++|+..+.+-... +.......+.+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 443221 12335667788888888888888887753221 11224567778888998889888888776654
Q ss_pred H
Q 014978 281 V 281 (415)
Q Consensus 281 ~ 281 (415)
+
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 4
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0025 Score=53.05 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHH
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKNRVAYS 188 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 188 (415)
..|........+.|++++|...|+.+.+. -|+. ..+..+..+|...|++++|...|+.+.+.-. +.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556678888888888888876 3332 4666778888888888888888888876411 11234455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
.+...+...|+.++|..+|+.+.+..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566677778888888888888877543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.068 Score=46.88 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=94.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.+|...+..-.+..-++.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+.-+. .++.+..-....+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHHHH
Confidence 346667777778888999999999999888 4667788888887765 5888999999988765 3333333345566
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHh
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGKM--PLIIVERMQK 386 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~--a~~~~~~m~~ 386 (415)
.-+...++-+.|..+|+.....-.. -..+|..+|.--..-|+. +.++-++|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778889999999999966553222 246899999988888887 3444455543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0017 Score=47.48 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 87 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (415)
....+..+....+.|++++|++.|+.+..+.| ...+--.|+.+|.+.++++.|...++..++.........|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44578899999999999999999999999865 34566788999999999999999999999875333345566666
Q ss_pred HHHHhcC
Q 014978 88 NLYISNG 94 (415)
Q Consensus 88 ~~~~~~~ 94 (415)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.014 Score=44.07 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (415)
..++..+...|++++|..+.+.+....|-+...|..+|.++...|+...|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.094 Score=45.75 Aligned_cols=35 Identities=11% Similarity=-0.060 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 324 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 324 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.+...+..++.++.-.|+++.|.+..+++.+..++
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45555666777777777777777777777766544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.089 Score=45.36 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..+++++..++... + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4555566677778877777776554 2 45777788888888888888877765432 1 13467788888888
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-------~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-------P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-------C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887777652 1 1 3345557777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.11 Score=45.68 Aligned_cols=349 Identities=13% Similarity=0.110 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCC-----C--Ccc---------hHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKM-----R--GPD---------TCSALLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
...+..++-+.+.+.+++|++.|....... | +.. .=+..+.++...|++.++..+++++..+=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 345556777788999999999987765541 1 111 114567788899999999999999876533
Q ss_pred C----CCcccHHHHHHHHHhc--------CCcCcHHHHHHH-------Hhhc-------CCCCHhHHHHHHHHHHh----
Q 014978 77 L----KCPLPYNHMLNLYISN--------GQLDKVPQMLQE-------LKKN-------TSPDVVTYNLWLAACAS---- 126 (415)
Q Consensus 77 ~----~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~-------~~~~-------~~~~~~~~~~l~~~~~~---- 126 (415)
+ -+..+|+.++-.++++ ...+-+.+.|+. +... .-|.......++....-
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 3 5777888755554432 222333333332 2110 11222222222211111
Q ss_pred --------------------------------cCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 127 --------------------------------QNDKETAEKAFLELKKTKID----PDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 127 --------------------------------~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
..+.+++..+.+.+....+. .=..++..++....+.++...|.+
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 01233333333333222110 012344555555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHH-------HHHHHHH-cC---CChHHHHHHHHHHHHcccccChhhHHHHH---HHHHhcCC-h
Q 014978 171 TLKEMEKRTCRKNRVAYS-------SLLSLYT-NM---GYKDEVLRIWKKMMSLFAKMNDAEYTCVI---SSLVKLGE-F 235 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~-------~l~~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~ 235 (415)
.+.-+... .|+...-. .+-+..+ .- -+...=+.+|+.....++. .......++ .-+.+.|. -
T Consensus 320 ~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~d 396 (549)
T PF07079_consen 320 YLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCD 396 (549)
T ss_pred HHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCcc
Confidence 66555443 23322111 1111111 11 1122233444444443332 111122222 23445565 8
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHH----HHHHh---cCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHH--HHhc
Q 014978 236 EKAENIYDEWESISGTGDPRVPNILL----AAYIN---RNQLEMAESFYNRLVTKGIKPCY----TTWELLTWG--YLKK 302 (415)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~ 302 (415)
++|..+++.+.+.. +-|..+-|.+. .+|.+ ...+.+-.++-+-+.+.|+.|-. ..-|.+.++ +...
T Consensus 397 ekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq 475 (549)
T PF07079_consen 397 EKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ 475 (549)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence 89999999998764 33444444322 23333 34566666666667788887633 344444443 4578
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRT 369 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 369 (415)
|++.++.-.-....+ +.|++.+|..+.-++....++++|..++..+.-..-. +..+-.+++-+
T Consensus 476 gey~kc~~ys~WL~~----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTK----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALC 539 (549)
T ss_pred ccHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 999999887777655 8899999999999999999999999999998542222 33444444433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.059 Score=49.42 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHH-------
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR------- 327 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~------- 327 (415)
.+...+..-+.+...+..|-++|..|-+ ...+++.....++|++|..+-+..- .+.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc----cccccccchHHHHh
Confidence 3444444444455666667777766543 2245556667777777777766543 2444432
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 328 ----LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 328 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
-|...-.+|.+.|+..+|.++++++....+
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 233444678888888999999888876543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=48.32 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=56.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 129 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (415)
....-+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|.......+.|...+-....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33444556677777777777666554 23444455555566666677777777666544444555556666667777777
Q ss_pred HHHHHHHHHHHHhC
Q 014978 130 KETAEKAFLELKKT 143 (415)
Q Consensus 130 ~~~a~~~~~~~~~~ 143 (415)
.+.|...|......
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777666653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=42.55 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=19.8
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
.+.+++++|.++++.+.+..|.+...|.....++.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333344444443333333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0033 Score=51.27 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---cccHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHML 87 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 87 (415)
.|..++.+.+.|++..|...|....+..|+ +.++-.|..++...|+++.|..+|..+.+.- +.+ +..+--|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHHHH
Confidence 566667777777777777777766666552 4566667777777777777777776666531 111 23444455
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHh
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVV 115 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (415)
.+..+.|+.++|..+|+++.+..|.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5666666677777777776666554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.17 Score=47.05 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 69 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 69 (415)
|.....++-..+--|++++|.+++-.+.++ ..-|..+.+.|++-.+.++++
T Consensus 734 ~s~~~q~aei~~~~g~feeaek~yld~drr-------DLAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 734 HSKEQQRAEISAFYGEFEEAEKLYLDADRR-------DLAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred hhHHHHhHhHhhhhcchhHhhhhhhccchh-------hhhHHHHHhhhhHHHHHHHHH
Confidence 333444444445567888888888776663 223455556666666655554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.039 Score=45.68 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+..+......|++.+|...|..+....| +..+--.++.+|...|+++.|..++..+....-.........-+..+.+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 3444444555566666665555555433 344445555555566666666666555543321111111112233444444
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
...+...+-..+.. .|.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 218 ~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 218 ATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred cCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433332 24455555555555555555555555444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0049 Score=40.05 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|.+.+++++|.++++.++.. .+.+...+......+...|++++|...|+...+.+|.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 455666666666666666651 233445555555666666666666666666666655543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.15 Score=44.48 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRT---CRKNRVAYSSLLSLYTN---MGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
..++-+|....+++...++++.+.... +..+...-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344555777777777777777776531 11112222233444555 677777777777755555556666777666
Q ss_pred HHHHh---------cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH----HHHHHHH---HH-HHhCCC---C
Q 014978 227 SSLVK---------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL----EMAESFY---NR-LVTKGI---K 286 (415)
Q Consensus 227 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~~~~---~ 286 (415)
+.|-. ....++|...|.+.-+. .|+...--.++..+.-.|.. .+..++- .. +.++|. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65532 12356666666655443 24433322333333333321 1222222 22 222332 3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.+...+..++.++.-.|+.++|.+..++|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4666777888999999999999999999987
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0038 Score=41.23 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+++.+...|...|++++|+..|+++++......++ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777776532122222 34566677777778888888887777654
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.049 Score=47.71 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+|+..+..-.+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+--....+.+...-+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444444444444555555555555444 3344445554444333 244455555554433333333333344444445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 126 SQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..++-+.|..+|+..+.+ +..+ ...|..++.-=..-|+...+..+=+.+..
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555555555555533322 1111 22444444444444444444444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.019 Score=41.76 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=66.9
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
..++..++.++++.|+++....+++..-. +.++... ..+. ........|+..+..+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~-----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD-----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc-----------cCCCCCCCCCHHHHHHHH
Confidence 45666777777777777777766655432 2211100 0000 112256789999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHhcCC
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNA-GHV-STEIYNSLLRTYAKAGK 375 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~ 375 (415)
.+|+..|++..|.++.+.+.+. +++ |..+|..|++-....-+
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999988774 333 67889999887765544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.23 Score=42.91 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... . -++.-|..++.+|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------K--KSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------C--CCCCChHHHHHHHH
Confidence 333444555566555555544442 25556666666666666666655544321 1 11244555566666
Q ss_pred HcCChhHHHHHHHH
Q 014978 338 EQGDIDGAEHLLVT 351 (415)
Q Consensus 338 ~~g~~~~a~~~~~~ 351 (415)
+.|+..+|..+..+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 66666666655555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=41.80 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555554442 2223344445555555555555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.15 Score=41.05 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhh
Q 014978 86 MLNLYISNGQLDKVPQMLQELKK 108 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~ 108 (415)
...+|-...++++|...+.+..+
T Consensus 37 AAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 33444555555555555555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.22 Score=42.31 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=63.8
Q ss_pred HHhhhhHHHHHHHHhcCcCC--CCcch-------HHHHHHHHHhcC-cHHHHHHHHHHHHhc----C----CCCCc----
Q 014978 23 AQALQTRARENFFENLPDKM--RGPDT-------CSALLHSYVQNK-KSAEAEALMEKMSEC----G----FLKCP---- 80 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~--~~~~~-------~~~li~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~~---- 80 (415)
.+.|+.+.|..++.++.... .++.. +-.+.......+ +++.|...+++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876642 13322 222333334455 777776666654332 1 11111
Q ss_pred -ccHHHHHHHHHhcCCcC---cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 81 -LPYNHMLNLYISNGQLD---KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 81 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.++..++.++...+..+ +|..+++.+....+.....+..-+.++.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23344455555544433 3444444444444444455555555555566666666666666654
|
It is also involved in sporulation []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.38 Score=44.87 Aligned_cols=332 Identities=11% Similarity=0.098 Sum_probs=151.4
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHH----------HH
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML----------NL 89 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~ 89 (415)
..+...-.+++|.++.+ ..|.+..|..+...-...-.++.|...|-+.... +.......|- ..
T Consensus 671 ~~Lve~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 671 MNLVEAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhH
Confidence 34455556677776654 3477777877777777766777777666554432 1111111111 11
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
-.--|++++|.++|-.+.++ ...+....+.|+|-...++++.--... -..-...++.+...+.....|++|
T Consensus 744 ~~~~g~feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhhhcchhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11236666666666554322 112333334444433333332110000 000011223333333322222222
Q ss_pred HHHHHH-------------------HH--hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 169 ATTLKE-------------------ME--KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 169 ~~~~~~-------------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
.+.|.. +. ...++.+....-.+..++.+.|.-++|.+.+-+.- .|. ..+.
T Consensus 816 ~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~ 886 (1189)
T KOG2041|consen 816 AKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVH 886 (1189)
T ss_pred HHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHH
Confidence 222211 11 01234455666677788888888888777664431 121 2345
Q ss_pred HHHhcCChHHHHHHHHHHHhccC-----------CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh----CCCCCCHh--
Q 014978 228 SLVKLGEFEKAENIYDEWESISG-----------TGDPRVPNILLAAYINRNQLEMAESFYNRLVT----KGIKPCYT-- 290 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-- 290 (415)
.|...++|.+|.++-+...-..+ -.+..+ .--|..+.+.|+.-.|.+++.+|.+ ++.+|-..
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kk 965 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKK 965 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHH
Confidence 66666677666665543211000 001111 1235566677776667777766643 23322111
Q ss_pred HH--HH-HHHHH----------HhcCCHHHHHHHHHHhHhcc-cCCC------CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 291 TW--EL-LTWGY----------LKKGQMEKVLECFKKAIGSV-RKWV------PDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 291 ~~--~~-l~~~~----------~~~~~~~~a~~~~~~~~~~~-~~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
.| .+ |+.-+ -..|..++|..+++...... ..+. .....|-.|.+--...|.++.|.+.--
T Consensus 966 lYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 966 LYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 11 11 11111 12355555555443322100 0000 112233444444556788888887665
Q ss_pred HHHHc-CCC-CHHHHHHHHHHHHhcCCC
Q 014978 351 TLRNA-GHV-STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 351 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 376 (415)
.+.+. ++. |.++|..|.-+-|....+
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 55542 233 447777766665555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=43.53 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=63.5
Q ss_pred HHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 89 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
-+-..|++++|..+|.-+.-..+.+...|..|..++-..+++++|...|......+ .-|+..+-....+|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34557888888888887766666677777777788888888888888887766554 23444555667777778888888
Q ss_pred HHHHHHHHh
Q 014978 169 ATTLKEMEK 177 (415)
Q Consensus 169 ~~~~~~~~~ 177 (415)
...|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0044 Score=40.94 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKT----KI-DPD-WISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
+++.+..+|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555544422 10 011 224444455555555555555555443
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0055 Score=35.09 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
.++..+..+|...|++++|+++|+++.+..|.+...|..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888877776653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.43 Score=43.74 Aligned_cols=335 Identities=10% Similarity=0.078 Sum_probs=186.7
Q ss_pred HHHHHHHHhcCcCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCCcCcHHHHHHHH
Q 014978 29 RARENFFENLPDKMRGPD-TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQMLQEL 106 (415)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 106 (415)
+.+...+..+....|-.. -|......-.+.|..+.+.++|++.+. |++.+...|......+. ..|+.+...+.|+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555566666665556543 455666666788889999999998886 46666667766665443 356677777778777
Q ss_pred hhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---c------CCHHHHHHHHHH
Q 014978 107 KKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK---M------ELPEKAATTLKE 174 (415)
Q Consensus 107 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~ 174 (415)
... .-.+...|...|..-..++++.....++++.++... ..|+..-.-|.+ . ...+++.++-..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 654 233456788888888888899999999998876411 111111111111 0 011111111111
Q ss_pred HH----------------------------------------hc---------------------------CC----CCC
Q 014978 175 ME----------------------------------------KR---------------------------TC----RKN 183 (415)
Q Consensus 175 ~~----------------------------------------~~---------------------------~~----~~~ 183 (415)
.. .. .+ +++
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aq 296 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQ 296 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHH
Confidence 00 00 01 112
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 263 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (415)
..+|...+..-...|+.+.+.-+|+...-- ...-...|-..+.-....|+.+.|..++....+.-.+ +......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 334444455555555555555555554321 0001112222333333446666666666655544322 32222222223
Q ss_pred HH-hcCcHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHH---HHHHHhHhcccCCCCCHHHHHHHHH----
Q 014978 264 YI-NRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVL---ECFKKAIGSVRKWVPDHRLITAAYN---- 334 (415)
Q Consensus 264 ~~-~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~p~~~~~~~l~~---- 334 (415)
+. ..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++..... ..-+..+...+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~----~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE----GKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc----cccCcchhHHHHHHHHH
Confidence 33 3578999999998888753 5433 2222334456677777777 33333332 1222222222222
Q ss_pred -HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 335 -KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 335 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.+.-.++.+.|..++.++.+.-+.+...|..+++.....+..
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 134468899999999999999888888999999888777643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.25 Score=40.49 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=113.6
Q ss_pred CcHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCCcCcHHHHHHHHhh--cCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKK--NTSPDVVTYNLWLAACASQNDKETAEK 135 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (415)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444443211 0133444455555555555555555555443 234444555555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 136 AFLELKKTKIDPDWISYSTLTS-LYIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 136 ~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543222 112222222 56666666666666666644210 01222333333335556666777776666665
Q ss_pred cccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 213 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 422112445555666666666777777777666654311 1233333444444555677777777766654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=49.67 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
-.|..+.+.|++..|...|+.+...-. |...-+.++...... .-..++..+..++.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 345567788888888888777554311 000011111111111 1123455666667777777
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE-KAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 175 (415)
..|++..++.....++|+...-.-..++...|+++.|+..|+++.+.. +.|-..-+.++.+-.+..... ...++|..|
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666667777777777777777777777777777776652 223334444444444444333 335566666
Q ss_pred Hh
Q 014978 176 EK 177 (415)
Q Consensus 176 ~~ 177 (415)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.079 Score=43.47 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.|+.-+.. .+.|++..|...|...++..+.- ....+-.|..++...|++++|...|..+.+....-+--+..+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 45677888888888887754211 1234556778888888888888888888875333333447777888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
....+.|+.++|..+|+++.+.-|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 888888889999999888888766643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=48.18 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
.++..+..+|.+.+++..|+......+. --++|......=..+|...|+++.|+..|+++.+..|.+..+-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4566777888899999999999999887 3466777777788889999999999999999999988888777777777
Q ss_pred HHhcCCC---cHHHHHHHHh
Q 014978 370 YAKAGKM---PLIIVERMQK 386 (415)
Q Consensus 370 ~~~~g~~---a~~~~~~m~~ 386 (415)
-.+..++ +..+|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 7666555 4667777754
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.037 Score=40.20 Aligned_cols=98 Identities=6% Similarity=-0.014 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 297 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 297 (415)
|..++..++.++++.|+.+....+++..-. +..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345677777788888888877777765432 2221100 0000 1123345677777777777
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+|+..|++..|+++.+...+. .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 777777777777777766665 44666667777666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=40.50 Aligned_cols=93 Identities=13% Similarity=-0.024 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc---HHHHHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP---YNHMLNLY 90 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~ 90 (415)
.-..++.++..|+.+.|++.|.+....-| .+.+||.-..++.-.|+.++|++-+++..+..-..+... |..-...|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34556677777777777777777666544 567777777777777777777777777665421112111 22222334
Q ss_pred HhcCCcCcHHHHHHHHh
Q 014978 91 ISNGQLDKVPQMLQELK 107 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~ 107 (415)
-..|+.+.|..-|+...
T Consensus 126 Rl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAA 142 (175)
T ss_pred HHhCchHHHHHhHHHHH
Confidence 44566666665555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.17 Score=40.66 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...|..-..+|....+|++|...+.+..+. ...+...|+. . ..++.|.-+.+++.+. +.-+..|+-....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~kl-sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSKL-SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 345677778888899999999988877642 2233333322 1 2233444444444331 22333455555667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHcCCC
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR---T--CRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 199 (415)
...|.++.|-..+++.-+. .+..++++|+++|++...- + ...-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666654322 1223445555555544321 0 00011223444455566666
Q ss_pred hHHHHHHHHHHHHccc----ccCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHhcCcHH
Q 014978 200 KDEVLRIWKKMMSLFA----KMND-AEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLE 271 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 271 (415)
+++|-..+.+-..... -++. ..|...|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 6655544443222111 1111 124445555666677778887777643321 122344555666665 456666
Q ss_pred HHHHHH
Q 014978 272 MAESFY 277 (415)
Q Consensus 272 ~a~~~~ 277 (415)
++.++.
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.19 Score=42.45 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=53.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH----hHHHHHHHHHHhcCCHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKETA 133 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 133 (415)
.|++.+|-..++++++. .|.|...+...=.++...|+...-...++++...-.++. ..-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 44455555555555443 233444444444455555555555555554443322222 1222233344445555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++.-++..+.+ +.|...-.++...+-..|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555443 33444444555555555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.044 Score=48.51 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCCcCcHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQELK 107 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (415)
.|+.+..+|.+.|++++|+..|++.++.+ |+.. +|..+..+|...|+.++|++.+++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444332 2211 23344444444444444444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.25 Score=41.77 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT---KIDPDWISYSTLTSLYIKMELPE 166 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~~~~~ 166 (415)
+.-.|++.+|...++++.+..|.|..+++-.=.+|.-.|+.+.-...++++... ++|-.......+.-++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 445788999999999999999999999999999999999999999999988755 22222233344556677899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
+|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...--.. -...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998875 5577777788888889999999998876543321100 01112222334556689999999998
Q ss_pred H
Q 014978 244 E 244 (415)
Q Consensus 244 ~ 244 (415)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.12 Score=45.92 Aligned_cols=67 Identities=15% Similarity=0.006 Sum_probs=54.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888899998888888877 4443 35788888888888888888888888774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.33 Score=44.68 Aligned_cols=176 Identities=15% Similarity=0.073 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-cccChh------hHHHHHHHHHh----cCChHH
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMNDA------EYTCVISSLVK----LGEFEK 237 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~l~~~~~~----~g~~~~ 237 (415)
.-+|.-+... +||. +..+++...-.|+-+.+++.+.+..+.+ +. ... .|...+..++. ..+.+.
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 3445555544 3443 3456777777899999999988876642 22 111 34444444433 456788
Q ss_pred HHHHHHHHHhccCCCCCchHHHH-HHHHHhcCcHHHHHHHHHHHHhCC--C-CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 238 AENIYDEWESISGTGDPRVPNIL-LAAYINRNQLEMAESFYNRLVTKG--I-KPCYTTWELLTWGYLKKGQMEKVLECFK 313 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 313 (415)
|.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... . +.....+--+...+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999998875 4566655543 456667899999999999765421 1 1233455566777888999999999999
Q ss_pred HhHhcccCCCCCHHHHHHHHHH-HHHcCCh-------hHHHHHHHHHHH
Q 014978 314 KAIGSVRKWVPDHRLITAAYNK-LEEQGDI-------DGAEHLLVTLRN 354 (415)
Q Consensus 314 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 354 (415)
.+.+. -..+..+|.-+..+ +...|+. ++|..+|+++..
T Consensus 330 ~L~~~---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKE---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhc---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99873 23344444444433 4456777 888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.12 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
.|..|.......|+++.|++.|.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=45.82 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcC-CCCH------hHHHHHHHHHHh----cCCHH
Q 014978 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDV------VTYNLWLAACAS----QNDKE 131 (415)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~ 131 (415)
-..-+|.-+.+. +|| ....++....-.|+-+.+++.+.+..+.. -... -.|...+..++- ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344566666654 333 45667777777888888888888765531 1111 224444443333 45778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYST-LTSLYIKMELPEKAATTLKEMEKR--TC-RKNRVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.|.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.... .. +.....+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 999999999887 566665543 456677789999999999976531 11 112334445666777889999999999
Q ss_pred HHHHHcccccChhhHHHHHH-HHHhcCCh-------HHHHHHHHHHHh
Q 014978 208 KKMMSLFAKMNDAEYTCVIS-SLVKLGEF-------EKAENIYDEWES 247 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~ 247 (415)
..+.+... .+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99988643 24444544433 34557777 889999988754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.23 Score=37.10 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 014978 223 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 302 (415)
Q Consensus 223 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 302 (415)
..++..+...+.......+++.+...+ ..+....+.++..|++.+. .+....+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555556666666666655554 2455566666666665432 233333331 11233344455666666
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
+-++++..++.++-. +...+..+... ++++.|.+++++ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666655422 11122222223 566666666554 124556666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.13 Score=47.31 Aligned_cols=182 Identities=11% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHH-----HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSAL-----LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.+..++-+|++.+|.++|.+-.........|+-| .+-+...|..++-..+.++-.+.. -+..-=......+..
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLIS 715 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhc
Confidence 3344455666666666666554433222233221 223334444444333333222110 111111233445556
Q ss_pred cCCcCcHHHHHHH---------Hhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 93 NGQLDKVPQMLQE---------LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 93 ~~~~~~a~~~~~~---------~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
.|+.++|..+.-. +... ...+..+...+...+.+...+..|-++|..|-+. ..++......
T Consensus 716 aGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~ 786 (1081)
T KOG1538|consen 716 AGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVET 786 (1081)
T ss_pred ccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeec
Confidence 6666666554321 1111 3445555666666666666667777777666432 2456666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRV-----------AYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++|++|..+-+...+. .||+. -|...-.+|.+.|+..+|..+++++..
T Consensus 787 ~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 7777777777665543 23321 122233445555555555555555433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.04 Score=49.79 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=90.9
Q ss_pred HHHHhhhhHHHHHHHH--hcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 21 AQAQALQTRARENFFE--NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
...-.|+++++.+..+ .+...-| ..-.+.++..+-+.|-++.|+++..+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 3455677777655554 2222112 4456777777778888888877654322 23455666777777
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
|.++.++. ++...|..|.....+.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 337 A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77665443 3666888888888888888888888876542 456666777778877777777666655
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 179 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
| -++....++...|+.++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 134444455555777777666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.4 Score=39.16 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcC---
Q 014978 159 YIKMELPEKAATTLKEMEKRTC--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG--- 233 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 233 (415)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.++++.|+...++.....+.....-|..-+.+++.--
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 4456777777777777765411 11233444556666677777777777777766544333333443444433211
Q ss_pred ----ChHH---HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 234 ----EFEK---AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 234 ----~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
|... |..-|+.+... -||+ .=...|..-...+... + ..-=..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcChH
Confidence 1111 11112222211 1111 1111111111111100 0 000013445678888899
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.|..-++++++.-....-....+-.+..+|...|-.++|.+.-+-+....+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 9999999888832222223345666777888888888888876655544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.25 Score=37.54 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDT---CSALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
.|..++..++.|..++|+.-|..+.+.+-.... --.......+.|+...|...|+++-.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 444455555555555555555555443211111 11112223445555555555555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.15 Score=43.57 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC----cchHHHHHHHHHhcCcHHHHHHHHH----HHHhcC-CCCCcccHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALME----KMSECG-FLKCPLPYN 84 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~ 84 (415)
.....+..+....+.++|+..+.+....-.+ ..+|..+..+.++.|++++++..-- -..+.. -.---..|.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999988876664222 3467778888999999988765322 111110 000123455
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhc--CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--CCHHHHHH
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKN--TSP---DVVTYNLWLAACASQNDKETAEKAFLELKKTKI---D--PDWISYST 154 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~--~~~~~~~~ 154 (415)
.+.+++-+..++.+++.+-+.-... ..+ --....++..++...+.++.+++.|+...+.-. . ....++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 5556666666677777666654332 111 113345567777788889999999988764311 1 12347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHc----ccccC-hh
Q 014978 155 LTSLYIKMELPEKAATTLKEMEK----RTCRKNRV-----AYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMN-DA 220 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 220 (415)
|...|.+..++++|.-+..+..+ .++..-.. ....|.-++...|+..+|.+.-++..+. |..+. ..
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999877665543 22221111 1223455677788888888887776543 32221 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
....+...|...|+.+.|+.-|++..
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 34567778889999999988888754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.26 Score=42.12 Aligned_cols=227 Identities=13% Similarity=0.047 Sum_probs=119.1
Q ss_pred HHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHH----HHHhCC-CCCCHHHHHHHHHHHHh
Q 014978 90 YISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFL----ELKKTK-IDPDWISYSTLTSLYIK 161 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~g-~~~~~~~~~~l~~~~~~ 161 (415)
+....+.++|+..+.+.... ...-..++..+..+.+..|.+++++..-- -..+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777765543 12223456667777777777776654321 111110 01112344445555555
Q ss_pred cCCHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-----cChhhHHHHHHHHHhc
Q 014978 162 MELPEKAATTLKEMEKR-TCRK---NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-----MNDAEYTCVISSLVKL 232 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 232 (415)
.-++.+++.+-..-... |..| ......++..++...+.++++++.|+...+.-.. ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433221 1111 1122334556666677778888877776553211 1223577777777777
Q ss_pred CChHHHHHHHHHHHhc----cCCCCC-chHH-----HHHHHHHhcCcHHHHHHHHHHHH----hCCCCC-CHhHHHHHHH
Q 014978 233 GEFEKAENIYDEWESI----SGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLV----TKGIKP-CYTTWELLTW 297 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~----~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p-~~~~~~~l~~ 297 (415)
.|+++|.-+..+..+. ++. |. ..|. .|.-++...|.+..|.+.-++.. ..|-+| .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7877777666654432 211 21 1122 23334555666666666665543 333222 1123335556
Q ss_pred HHHhcCCHHHHHHHHHHhHh
Q 014978 298 GYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|...|+.+.|+.-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66777777777777777654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.36 Score=38.16 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHH--HHHHH
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM--LNLYI 91 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 91 (415)
.|-.|+-+-.-|-+.-|+--|.......|+ +.+||.|.--+...|+++.|.+.|+...+.+ |. .-|..+ .-++-
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~Y 144 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALY 144 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeee
Confidence 344455555555556666666655555553 4566666666666777777777777666654 21 112211 11223
Q ss_pred hcCCcCcHHHHHHHHhhc
Q 014978 92 SNGQLDKVPQMLQELKKN 109 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (415)
--|++.-|.+-+.+.-+.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred ecCchHhhHHHHHHHHhc
Confidence 346666666655555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.58 Score=39.81 Aligned_cols=225 Identities=16% Similarity=0.070 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcC-CHHHHHHHHHHHHhc--------CCCCCH---
Q 014978 125 ASQNDKETAEKAFLELKKTK--IDPDWI------SYSTLTSLYIKME-LPEKAATTLKEMEKR--------TCRKNR--- 184 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 184 (415)
.+.|+.+.|..++.+....- ..|+.. .|+. .....+.+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35666777777776665432 122211 1222 22233344 777776666654432 112222
Q ss_pred --HHHHHHHHHHHcCCChH---HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHH
Q 014978 185 --VAYSSLLSLYTNMGYKD---EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259 (415)
Q Consensus 185 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (415)
.+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+.+..|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 34566777777777654 455566666544332 23345455666666788888888888887653 213344444
Q ss_pred HHHHHHh--cCcHHHHHHHHHHHHhCCCCCCHh-HHHHH-H---HHHHhcCC------HHHHHHHHHHhHhcccCCCCCH
Q 014978 260 LLAAYIN--RNQLEMAESFYNRLVTKGIKPCYT-TWELL-T---WGYLKKGQ------MEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 260 l~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~~~------~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
++..+.. ......+...+..++...+.|... ....+ + ....+.++ .+....++...... .+.+.+.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCCH
Confidence 4444422 223445666666665444444443 11111 1 11122222 34444444432221 2333344
Q ss_pred HHHHHHH-------HHHHHcCChhHHHHHHHHHH
Q 014978 327 RLITAAY-------NKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 327 ~~~~~l~-------~~~~~~g~~~~a~~~~~~~~ 353 (415)
.+-..+. ..+.+.++++.|.+.|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4333322 23556788999988887554
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.22 Score=44.37 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=96.7
Q ss_pred HHHHHHHHH---HhhhhHHHHHHHHhcC---cCCCC-cchHHHHHHHHHh---------cCcHHHHHHHHHHHHhcCCCC
Q 014978 15 SYRQRVAQA---QALQTRARENFFENLP---DKMRG-PDTCSALLHSYVQ---------NKKSAEAEALMEKMSECGFLK 78 (415)
Q Consensus 15 ~~~~~~~~~---~~g~~~~A~~~~~~~~---~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~ 78 (415)
.+..|.... ..-..+.|+.+|..+. ...|+ ..+|..+..++.. ..+..+|.++-+...+.+ +.
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~ 336 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV 336 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC
Confidence 344444442 2335667888888888 44453 4445444433321 234456667777777766 45
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTS 157 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~ 157 (415)
|+.+...+..++...++++.|...|++.....|....+|....-.+.-.|+.++|.+.+++..+.. ...........++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 666666666766777778888888888777667777777777777777888888888888766552 1112223333444
Q ss_pred HHHhcCCHHHHHHHHHH
Q 014978 158 LYIKMELPEKAATTLKE 174 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~ 174 (415)
.|+.. ..+.|.+++-+
T Consensus 417 ~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 417 MYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHcCC-chhhhHHHHhh
Confidence 55543 35666666544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.21 Score=35.91 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=68.4
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI---SYSTLTSLYIKMEL 164 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~ 164 (415)
-+++..|+.+.|++.|.+.....|.....||.-..++.-.|+.++|++=+++..+..-+.+.. .|.--...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356778888889888888877778888888888888888888888888888887653222222 23334455677788
Q ss_pred HHHHHHHHHHHHhcC
Q 014978 165 PEKAATTLKEMEKRT 179 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~ 179 (415)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.1 Score=42.26 Aligned_cols=306 Identities=11% Similarity=0.030 Sum_probs=167.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc-C--CCCHhHHHHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-T--SPDVVTYNLWLAACA 125 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~l~~~~~ 125 (415)
..+|.-+...+.+..|+++-..+...-.. ....|.....-+.+..+. .=.++++.+.+. . .....+|..++.-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 34566677788888888887776542111 145566666666655322 223444444443 1 134557888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKID----PDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----------TCRKNRVAYSSL 190 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 190 (415)
..|+++.|..+++.=...+.. .+..-+...+.-..+.|+.+....++-.+..+ ..+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 899999998887643332211 11222344555566677777766666655442 111111222222
Q ss_pred HH--------HHHcCCChHHHHHHHHH-H-HHc-ccccChhhHHHHHHHHHhcCChHHHHH----------HHHHHHh-c
Q 014978 191 LS--------LYTNMGYKDEVLRIWKK-M-MSL-FAKMNDAEYTCVISSLVKLGEFEKAEN----------IYDEWES-I 248 (415)
Q Consensus 191 ~~--------~~~~~~~~~~a~~~~~~-~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~----------~~~~~~~-~ 248 (415)
++ .+.+.++-.++..-|.. - ... -+.+-..........+.+.....-..+ +.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 01111222222211110 0 000 011111123333444444433221111 1122211 2
Q ss_pred cCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 249 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
+.....-+.+--+..+...|+..+|.++-.+.. -||-..|..=+.+++..+++++-+++-+...+ +.-
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--------PIG 746 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--------PIG 746 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------CCC
Confidence 222333455556677788899999998877765 47888999999999999999987777665322 345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
|..++.+|.+.|+.++|.+++-+..... -...+|.+.|++
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDV 786 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccH
Confidence 6678889999999999999887664321 455666666665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.36 Score=36.07 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 014978 225 VISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~ 244 (415)
+++.|.+.+-++++..++..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444444444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.31 Score=35.14 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
....+..+...|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555554432 45555555556666666666666666665555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.6 Score=41.94 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
.+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455566666666666666543211 12224445666666666666666666654
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=1 Score=40.43 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=58.9
Q ss_pred CcHHHHHHHHh---hcCCCCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 97 DKVPQMLQELK---KNTSPDVVTYNLWLAACASQ---------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 97 ~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
+.|+.+|.+.. ...|.....|..+..++... .+..+|.++-++..+.+ +.|+.....+..+..-.++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 45555666655 22333344444444433221 23344555555555554 4455555555555555566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++.|..+|++....+ +....+|....-.+.-.|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666542 22233444444444555666666666666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.8 Score=39.14 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh--cC----CcCcHHHHHHHHhhc----CCCCHhHHHHHHHHHHhcCCH
Q 014978 61 SAEAEALMEKMSECGFLKCPLPYNHMLNLYIS--NG----QLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 130 (415)
+++...+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++. ..++-.++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788889999988887666554333333 11 245778888888876 23344444444433 33333
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 131 ----ETAEKAFLELKKTKIDPDWI--SYSTLTSLYIKMEL--PEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 131 ----~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+.++.+|+.+.+.|+..+.. ..+.++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 55677777777777554433 22222222222222 3466777777877777777766665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=37.96 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=28.3
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP---DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
..+.|++++|.+.|+.+..+.|. ...+--.++.++.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555555554222 2233444555555556666666555555554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=33.43 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
..+...|...|++++|.++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.087 Score=43.24 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 014978 111 SPDVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAA 169 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 169 (415)
..|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3345555555554433 3456666667777888888888888888887765432 223466
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCh
Q 014978 170 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (415)
+++++|...|+.||..+-..+++++.+.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 7777777777777777777777777666554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.4 Score=40.86 Aligned_cols=319 Identities=13% Similarity=0.039 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLY 90 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 90 (415)
...|..+....+.|++..+.++...+.+....+ ..|..+... .....+++....+++-.. .|-. ..-...+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT---LPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHH
Confidence 346778888889999999888888775421111 122222221 123345554444443221 1211 1122233345
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA-- 168 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a-- 168 (415)
.+.+++...+.++ ...|.+...-...+.+....|+.++|....+.+-..| ...+..++.++..+.+.|.+...
T Consensus 110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 5555665555422 2235566666777788888898887877777776555 34456677777777766654332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc------------CCChHHHHHHHHHHHHcccccChhhHHHHHHHH--HhcCC
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTN------------MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL--VKLGE 234 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 234 (415)
.+-++.+...| +...-..+...+.. ..++..+...+.. +.|+...-..++.++ ....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence 22222222222 11111122221100 0111111111111 112221111111122 23445
Q ss_pred hHHHHHHHHHHHhcc-CCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 235 FEKAENIYDEWESIS-GTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
.+.|..++....... ..+. ..+...+.......+..+++...++...... .+......-+....+.++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 677777777654332 1111 1123333333333322455666665544321 2334444444455577788777777
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
+..|-.. ..-...-..-+..++...|+.++|..+|+.+.
T Consensus 335 i~~L~~~---~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPME---AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHh---hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7776542 22233334445566666788888888877764
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=41.94 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVL 399 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l 399 (415)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+. +...++.+. ..|+.|...+..++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777788888899999999999988888888999999999999888 455555554 47999999888655
Q ss_pred HHh
Q 014978 400 KIT 402 (415)
Q Consensus 400 ~~~ 402 (415)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=36.61 Aligned_cols=204 Identities=20% Similarity=0.139 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH-
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS- 227 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 227 (415)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555555555555555444431 112233344444444444555555555555554432221 111111122
Q ss_pred HHHhcCChHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH
Q 014978 228 SLVKLGEFEKAENIYDEWESISG--TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 305 (415)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555566666555555533111 0111222222233444556666666666655532110244555555566666666
Q ss_pred HHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 306 EKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+.+...+..... ..|+ ...+..+...+...+..+.+...+.......+.
T Consensus 219 ~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALE----LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666666655 2222 333333333333555566666666666555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.1 Score=41.81 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhcCcC-----CCCcchHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcc--cH
Q 014978 12 RAQSYRQRVAQAQALQTRARENFFENLPDK-----MRGPDTCSALLHSYVQ-NKKSAEAEALMEKMSECGFLKCPL--PY 83 (415)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~--~~ 83 (415)
|...+..--.+.+.+++.+|.++-.+-.-. .-++..+-.-+.++.+ .++.+-...++..+...++..+.. ++
T Consensus 677 R~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~ 756 (1265)
T KOG1920|consen 677 RILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTS 756 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccc
Confidence 444555555678888888888776654332 1234555555556654 455555555555555443222111 01
Q ss_pred HHHHHHHHhc----CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 014978 84 NHMLNLYISN----GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN--DKETAEKAFLELKK 142 (415)
Q Consensus 84 ~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 142 (415)
.+-...|... .+.+...+.+.....+..|+ .....++..|.+.+ .++.+++...+...
T Consensus 757 ~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 757 GSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cccceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1110111111 12233333333333345555 45566778888877 66777777766664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.4 Score=40.26 Aligned_cols=304 Identities=12% Similarity=0.110 Sum_probs=176.6
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCC---cchHHHHHHHHHhcCcH--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 21 AQAQALQTRARENFFENLPDKMRG---PDTCSALLHSYVQNKKS--AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
.+...+.+..|+++-..+.. |. ..+|.....-+.+..+. +++.+.+++=.+.-. -+...|..+.+-....|+
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGR 522 (829)
T ss_pred HHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCc
Confidence 34677889999999888766 43 45566666666655322 223333332222212 344567778877778899
Q ss_pred cCcHHHHHHHHhhc-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHH--
Q 014978 96 LDKVPQMLQELKKN-----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-----------IDPDWISYSTLTS-- 157 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~-- 157 (415)
++-|..+++.=... .--+..-+...+.-+...|+.+....++-++...- .+.....|.-+++
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~ 602 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQ 602 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhh
Confidence 99998887652211 11133345566667777888887777776665431 1111112222221
Q ss_pred ------HHHhcCCHHHHHHHH--HHHH----hcCCCCCHHHHHHHHHHHHcCCChH---HH-------HHHHHHHHHc-c
Q 014978 158 ------LYIKMELPEKAATTL--KEME----KRTCRKNRVAYSSLLSLYTNMGYKD---EV-------LRIWKKMMSL-F 214 (415)
Q Consensus 158 ------~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~~~~~-~ 214 (415)
.+.+.++-.++...| +... ..|..|+. .....++.+..... +| +.+.+.+... |
T Consensus 603 ~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 603 DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011112222222211 1100 01222332 23344444443321 11 1222222221 2
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
......+.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.++...+++++.+++-+... .+.-|.-
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 23344456666777888999999998877653 5688888888999999999988777655443 2566888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+...|.+.|+.++|.+++-+.-. .. -...+|.+.|++.+|.+.--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-------l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-------LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-------hH----HHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999999876422 11 567788999999998876544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.95 Score=35.37 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH---HH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT---CV 225 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 225 (415)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+...+.+....-..+...... ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 566677777777777777777777766533332 2335566677777777777777766665432221111111 11
Q ss_pred --HHHHHhcCChHHHHHHHHHH
Q 014978 226 --ISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 226 --~~~~~~~g~~~~a~~~~~~~ 245 (415)
.-.+...+++..|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11223456777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.94 Score=32.79 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=79.2
Q ss_pred HcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHH
Q 014978 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
.-.|..++..++..+..... +..-++.+|--....-+-+-..+.++.+-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 34577777788777776542 334455555444444455555555555433 22221 233333333
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+-.+ | .+.......+..+..+|+-+.-.+++.+... .-.+++.....+..+|.+.|+..++.+++.++-+
T Consensus 77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKK---NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 332221 1 1345556667788888988888888888764 3467888888999999999999999999999988
Q ss_pred cCCC
Q 014978 355 AGHV 358 (415)
Q Consensus 355 ~~~~ 358 (415)
.|..
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=41.25 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAY 187 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 187 (415)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567778888888888888888888888774 55777888888888888888888888877765 5777887777
Q ss_pred HHHHHHH
Q 014978 188 SSLLSLY 194 (415)
Q Consensus 188 ~~l~~~~ 194 (415)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 6666663
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.35 Score=39.90 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------------ChHHHHH
Q 014978 147 PDWISYSTLTSLYIK-----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG----------------YKDEVLR 205 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 205 (415)
-|-.+|...+..+.. .+.++-....+..|.+.|+.-|..+|+.|+..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345555555555543 3556666677788888999999999999988765432 2245788
Q ss_pred HHHHHHHcccccChhhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 014978 206 IWKKMMSLFAKMNDAEYTCVISSLVKLGEF-EKAENIYDEW 245 (415)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 245 (415)
++++|...|+.||..+-..+++++.+.+-. .+..++.-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 899999999999999988899988877653 3333443333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.3 Score=33.53 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014978 160 IKMELPEKAATTLKEME 176 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~ 176 (415)
...|++.+|..+|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34444444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.3 Score=42.52 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...-+..+.+...++-|+.+-+.-......-.........-+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4556667777777777776655432111111123444455667889999998888766543 2333 345666777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
.+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 7778888888888888754 55566788899999999888777766543 2221 112445666777777777777665
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
..... +...... .+-..+++++|.+++..+.
T Consensus 487 ~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 54322 2223333 3345778888888877653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.3 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=12.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
+...|++.+|.++|+++.+.++.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCC
Confidence 44455555555555555554444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.055 Score=28.79 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=15.2
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 106 LKKNTSPDVVTYNLWLAACASQNDKETAE 134 (415)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (415)
..+..|.+..+|+.+...+...|++++|+
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33334555555555555555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.5 Score=40.63 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
....-+..+.+...++-|..+-+. .+..++. .......+.+.+.|++++|...|-+.... +.|+ .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 355667777788888888777653 3333332 13344556677889999999988776654 3333 34566
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 273 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 273 (415)
|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66777777888888999888876 66677789999999999998888776543 1111 11234566777777778888
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014978 274 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 315 (415)
Q Consensus 274 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 315 (415)
..+-..... +......+ +-..+++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776555432 23333333 34468888888887653
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.31 E-value=5.7 Score=38.76 Aligned_cols=297 Identities=12% Similarity=0.005 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHH----HhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSY----VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 89 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (415)
.+....-.+...|.+++|++..-.+.+ +..-..++..+ ...++........+.+...-+..++..--.-+..
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d----~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHALAAGD----PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCCC----HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 334444466777777777766554433 33333333332 2334444333333332211111112222222234
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCC-CHh-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSP-DVV-------TYNLWL-AACASQNDKETAEKAFLELKKT----KIDPDWISYSTLT 156 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l~ 156 (415)
.....++.+|..++.++....++ +.. .|+.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45578899999999988765222 221 244332 2345578889999888877654 1234555677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHH--HHHHcCCCh--HHHHHHHHHHHHcc--ccc----ChhhHH
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLL--SLYTNMGYK--DEVLRIWKKMMSLF--AKM----NDAEYT 223 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~--~~a~~~~~~~~~~~--~~~----~~~~~~ 223 (415)
.+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+. .+....+....... -.| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999998877765422233333 33332 334555633 22333333332221 111 112344
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhccCCCCCchH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCC----CHhHHHHHH
Q 014978 224 CVISSLVK-LGEFEKAENIYDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP----CYTTWELLT 296 (415)
Q Consensus 224 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~ 296 (415)
.+..++.+ .+...++..-+..-......|-.... ..|+......|++++|...++++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44444444 12222222222222222222222222 367788888999999999998887543333 222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 014978 297 WG--YLKKGQMEKVLECFKK 314 (415)
Q Consensus 297 ~~--~~~~~~~~~a~~~~~~ 314 (415)
.. ....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356787777776665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.8 Score=32.73 Aligned_cols=42 Identities=21% Similarity=0.057 Sum_probs=18.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 377 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a 377 (415)
+...|++.+|.++|+.+....+..+..-..+..++...|+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 444555555555555554444333333333333333344443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.1 Score=34.97 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHH------
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-NRV------ 185 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------ 185 (415)
..+..+...|.+.|+.+.|.+.|.++.+....+.. ..+-.++....-.+++..+...+.+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777888888888888888888888776443332 355667777788888888888777765431111 111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.|..+ .+...+++..|-+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2334578888777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.5 Score=33.72 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=95.4
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-R 181 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 181 (415)
|.+.....|.-..+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-+. +.-.|++.-|.+=+...-+.+. .
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCC
Confidence 3333333466677888888888899999999999998888743323223333333 3346888888777666655431 1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHH-HHHHcccccChhhHHHHH-HHHHhcCChHHHHHHHHHHHhccCC------CC
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWK-KMMSLFAKMNDAEYTCVI-SSLVKLGEFEKAENIYDEWESISGT------GD 253 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 253 (415)
|=...|--+. -+.-++.+|..-+. +... .|..-|...| ..|...=..+ .+++.+....-. .-
T Consensus 167 PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~L 236 (297)
T COG4785 167 PFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHL 236 (297)
T ss_pred hHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHH
Confidence 2222333222 23345666654433 3322 2323333222 2222111112 233333222110 12
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGI 285 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 285 (415)
+.+|..+...+...|+.++|..+|+-.+..++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45788889999999999999999998887643
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.03 E-value=11 Score=41.16 Aligned_cols=149 Identities=8% Similarity=-0.056 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcC----CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 18 QRVAQAQALQTRARENFFENLPDK----MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
.+.+..+.+.+.+|.-.++.-... .....-|..+...|...++++...-+...-.. +.. ....+-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhh
Confidence 344567889999999999984221 11223344555589999999998887774111 222 33445566778
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-LTSLYIKMELPEKAATTL 172 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~ 172 (415)
|++..|...|+.+.+..|+....++.++......+.++...-..+-.... ..+....++. =+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999999887888888998888888888888887766655543 2333333333 234446677777776665
Q ss_pred H
Q 014978 173 K 173 (415)
Q Consensus 173 ~ 173 (415)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 5
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.00 E-value=7.7 Score=39.21 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHh
Q 014978 48 CSALLHSYVQNK--KSAEAEALMEKMSE 73 (415)
Q Consensus 48 ~~~li~~~~~~~--~~~~a~~~~~~~~~ 73 (415)
.-.+|.+|++.+ .++.++....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345667777766 56666665555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.026 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=17.5
Q ss_pred CcCCC-CcchHHHHHHHHHhcCcHHHHH
Q 014978 39 PDKMR-GPDTCSALLHSYVQNKKSAEAE 65 (415)
Q Consensus 39 ~~~~~-~~~~~~~li~~~~~~~~~~~a~ 65 (415)
.+..| ++.+|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33334 5667777777777777777664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.5 Score=37.00 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
...+...++..-....+++.+...+-++.... ..++...+ ..++. +-.-++++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 33345555544455666777777666654321 11222222 12232 233456677777777777788888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHh
Q 014978 295 LTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 295 l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+|+.+.+.+++.+|..+...|+.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777777665
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=6 Score=37.54 Aligned_cols=280 Identities=13% Similarity=-0.032 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHH-----HHhcCCcCcHHHHHHHHhh----c-CCCCHhHHHHHHHHHHhcC--
Q 014978 61 SAEAEALMEKMSECGFLKCPLPYNHMLNL-----YISNGQLDKVPQMLQELKK----N-TSPDVVTYNLWLAACASQN-- 128 (415)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~-- 128 (415)
...+.+.++.....|. ......+..+ +....+.+.|+.+|+...+ . ...+......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 5678888888888762 2222223322 3345678899999988755 1 2224456777777777743
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--cCCChHH
Q 014978 129 ---DKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT--NMGYKDE 202 (415)
Q Consensus 129 ---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 202 (415)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|....+.|.. ....+..++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677999999998887 4555433332222222 24678999999999988742 2222222222222 3357789
Q ss_pred HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH-HHH---Hh----cCcHHHHH
Q 014978 203 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAY---IN----RNQLEMAE 274 (415)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~g~~~~a~ 274 (415)
|..++++..+.|. |....-...+..+.. +.++.+.-.+..+...+.+ ...+-...+ ... .. ..+.+.+.
T Consensus 383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999988873 332222223333444 7777777777666665533 222211111 111 11 12455666
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH----HcCChhHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKK----GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE----EQGDIDGAE 346 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~ 346 (415)
..+.+....| +......+...|... .+++.|...+..+.. .+ ......+...+- ... +..|.
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~--~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE--QG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH--hh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 6666666554 344444454444332 357777777777665 22 222222222221 123 56777
Q ss_pred HHHHHHHHcCCC
Q 014978 347 HLLVTLRNAGHV 358 (415)
Q Consensus 347 ~~~~~~~~~~~~ 358 (415)
+++......+..
T Consensus 530 ~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 530 RYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHhcCch
Confidence 777777665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.13 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 014978 187 YSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.16 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMS 72 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~ 72 (415)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.6 Score=34.45 Aligned_cols=60 Identities=8% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...|+--.+..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4556678888999999999998888764 56778888899999999998888777776643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.5 Score=36.17 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
-..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 345666777899999999999999875422 23446678999999999999999999987653
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.39 E-value=5.3 Score=35.31 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
...+|..++..+.+.|.++.|...+..+...+... .......-+......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777777777777777666543211 222333344555566677777776666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.1 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=18.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
..+.|++....+.+++|.+.+++..|.++|+-++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.27 E-value=5.5 Score=35.18 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
...+..+.|+++...++....... .++...+..+... +.++++++...++.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~-~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED-SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC-ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 345667778888754444444322 2344445554444 778888888777776543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.31 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 292 WELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 292 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
|..+...|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.6 Score=34.46 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC-CCCHHHHHHHHHHHHHcCCh
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-VPDHRLITAAYNKLEEQGDI 342 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 342 (415)
+.+.|+ +.|.+.|-.+...+.--++.....+. .|.-..+.++++.++.++++....- .+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444455 56777777777665443444444444 4444678888888888888754444 67888888888888888888
Q ss_pred hHHH
Q 014978 343 DGAE 346 (415)
Q Consensus 343 ~~a~ 346 (415)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.1 Score=29.40 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 308 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 308 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
..+-++.+.. ..+.|++....+.+.+|.+.+++..|.++|+-++..-......|..+++
T Consensus 29 ~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3444444444 4556666666666666666666666666666665432222224444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.42 Score=25.00 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 356 (415)
+..+...+...|++++|++.|++..+..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3444444555555555555555554443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=3.4 Score=31.71 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=55.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHH--HHHHHHcCCCh
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDW-ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSS--LLSLYTNMGYK 200 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~ 200 (415)
++.+..++|+.-|..+.+.|...=+ .....+.......|+...|...|+++-.....|-.. -... -.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3455566666666666655532111 111223334455566666666666655432222221 0000 11223455555
Q ss_pred HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
++...-.+-+-..+.+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444443332222222233444445556666666666665544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.12 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRG 44 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 44 (415)
.+..+..+.+.|++++|.+.|+.+....|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 355666666777777777777776665554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.46 Score=24.97 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 358 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (415)
.+|..+..++...|++++|...|++..+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56788899999999999999999999987664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=8.6 Score=35.12 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
|.....+++..+.++-.+.-+..+..+|..-| -+...|..++.+|... ..+.-..+++++.+.... |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666666777776644 2555666677766666 455566666666665433 4444445555
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPC------YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
.|-+ ++.+.+..+|.++...-+ |. ...|..+...- ..+.+....+....... .+...-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 5544 666666666666654321 10 12344333211 34555556655555543 34444445556666677
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
....++.+|++++..+.+.+..+..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 78888888888888888877776666566655544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.8 Score=29.36 Aligned_cols=49 Identities=8% Similarity=-0.071 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345566666666666777777777777777777777777777776554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.24 E-value=6.8 Score=33.62 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHcCCCh-
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIK--ME----LPEKAATTLKEMEKRTC---RKNRVAYSSLLSLYTNMGYK- 200 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 200 (415)
++...+++.|.+.|..-+..+|-+....... .. ...+|.++|+.|++... .++-..+..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666555555442222222 11 23456666666665421 1222333333322 22222
Q ss_pred ---HHHHHHHHHHHHcccccChh--hHHHHHHHHHhcCC--hHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 201 ---DEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGE--FEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 201 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
+.+..+|+.+.+.|...+.. ....++..+....+ ...+..+++.+.+.++++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555544433222 12222211111111 23455555555555555555444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.12 E-value=10 Score=35.32 Aligned_cols=316 Identities=10% Similarity=0.021 Sum_probs=187.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHH-hcCcHHHHHHHHHHHHhc-CCC-CCcccHHHHHHHHHh
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYV-QNKKSAEAEALMEKMSEC-GFL-KCPLPYNHMLNLYIS 92 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 92 (415)
+.+.--.+-|..+.+.++|++....-| +...|......+. ..|+.+.....|+..... |.. .+...|...+..-..
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 333344788999999999999887655 6677776665544 578999999999988764 211 245578888888888
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHh-H---HH------------------HHHHHHHh------------------------
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVV-T---YN------------------LWLAACAS------------------------ 126 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~---~~------------------~l~~~~~~------------------------ 126 (415)
++++.....+|+++.+....... . |. .+...-..
T Consensus 164 qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~ 243 (577)
T KOG1258|consen 164 QKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDP 243 (577)
T ss_pred cccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCc
Confidence 89999999999998753110000 0 00 00000000
Q ss_pred cCCHHHHHHHHHHH------------------------HhC---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 127 QNDKETAEKAFLEL------------------------KKT---KI----DPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 127 ~~~~~~a~~~~~~~------------------------~~~---g~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
.+..+++.....+. ++. -+ +++..+|..-+..-.+.|+.+.+.-+|+..
T Consensus 244 s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~erc 323 (577)
T KOG1258|consen 244 SKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERC 323 (577)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 00011111111100 000 00 123345666666667778888888888776
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP- 254 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 254 (415)
.-- +..=...|-..+......|+.+-|..++....+-..+-...+-..-.......|+++.|..+++.+...- |+.
T Consensus 324 li~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v 400 (577)
T KOG1258|consen 324 LIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLV 400 (577)
T ss_pred HhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchh
Confidence 531 1111234555555555668888888888777665443222222222233456789999999999998764 332
Q ss_pred chHHHHHHHHHhcCcHHHHH---HHHHHHHhCCCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHhHhcccCCCCCH
Q 014978 255 RVPNILLAAYINRNQLEMAE---SFYNRLVTKGIKPCYTTWELLTWG-----YLKKGQMEKVLECFKKAIGSVRKWVPDH 326 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 326 (415)
..-..-+....+.|+.+.+. .++........ +......+.-- +.-.++.+.|..++.++.+ ..+++.
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~---~~~~~k 475 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAND---ILPDCK 475 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh---cCCccH
Confidence 23333355566788888877 44443333211 22333333322 3346889999999999987 567777
Q ss_pred HHHHHHHHHHHHcC
Q 014978 327 RLITAAYNKLEEQG 340 (415)
Q Consensus 327 ~~~~~l~~~~~~~g 340 (415)
..|..++..+...+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 476 VLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887766554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.91 E-value=4.6 Score=31.01 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 67 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
.++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444455555555566666666666555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.72 E-value=7.2 Score=32.78 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHH
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVL 399 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l 399 (415)
++......|..+|.+.+|.++.++....++.+...|-.|++.+...|+- +..-+++|. ..|+..|......+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 4556667899999999999999999999999999999999999999985 444444432 36777777665543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.5 Score=34.44 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=41.7
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 128 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (415)
-+.++|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-..+..+..|....+...-+.+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3344555555555555544431 1111 122223334455555555555555444444444444444445555555
Q ss_pred CHHHHHHHHHHHHhC
Q 014978 129 DKETAEKAFLELKKT 143 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~ 143 (415)
.+++|+.=|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.5 Score=30.04 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 272 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5566666666667777777777777777777888777777777665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.6 Score=24.39 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.|..+...+...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666667777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.6 Score=35.65 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=76.2
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 014978 73 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD 148 (415)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 148 (415)
..|.+.+..+-..++..-....+++.+..++-++++. ..++.. -.+.++.+. .-++++++.++..=++-|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3455566667777777767778889999988888764 222222 222333332 3467788888888888999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=3.6 Score=37.04 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCh
Q 014978 122 AACASQNDKETAEK-AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 200 (415)
Q Consensus 122 ~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (415)
.-....|++-.|-+ ++..+......|+.. ......+...|+++.+.+.+...... +.....+...+++...+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33345666665554 444444433334433 33344567778999988888776543 334556677888888888999
Q ss_pred HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 201 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
+.|..+-.-|....+. +...........-..|-++++.-.|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999988888877665 44444433444455677888888888776544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=33.91 Aligned_cols=305 Identities=12% Similarity=0.018 Sum_probs=143.4
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH--HHHHHHHhhc--CCC----------CHhHHHHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV--PQMLQELKKN--TSP----------DVVTYNLWLA 122 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~--~~~----------~~~~~~~l~~ 122 (415)
..+.++...+.++.+...|.......+|.-...|.+.|..... ++-++.+... .+. ....+....-
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 4677888888888888877666666677777777777765432 2222222211 111 1122222333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH---HHhcC-CCCC--HHHHHHHH
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPD-----WISYSTLTSLYIKMELPEKAATTLKE---MEKRT-CRKN--RVAYSSLL 191 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~-~~~~--~~~~~~l~ 191 (415)
++.....+..|+++...+...- .|= ..........+....+.++|+.+++- +...+ ..++ ..+-+.+
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~- 186 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL- 186 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh-
Confidence 3444455555555554443321 110 01112233344555556666655443 33221 0111 1111111
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHH-HHHHHhcCcH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL-LAAYINRNQL 270 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~ 270 (415)
.+.+-+..|..-+-.. .|......--++++....+...+..-.+.+... ..|...+..| .+.+.-.|++
T Consensus 187 ---~kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~ 256 (696)
T KOG2471|consen 187 ---LKTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGNH 256 (696)
T ss_pred ---cccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcch
Confidence 1222222222111110 000011111123333333333333333322211 1122222222 2334456788
Q ss_pred HHHHHHHHHHH---hCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhc-----ccCCCCCH----------H
Q 014978 271 EMAESFYNRLV---TKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKKAIGS-----VRKWVPDH----------R 327 (415)
Q Consensus 271 ~~a~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~p~~----------~ 327 (415)
.+|.+++...- ..|...+ -..||.|...+.+.|.+..+..+|.++++. ..|++|.. .
T Consensus 257 ~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 257 PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME 336 (696)
T ss_pred HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh
Confidence 88877765532 1221111 122455555556667777777777766641 13444322 1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 328 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
......-.|...|++-.|.+.|.+....-..++..|-.|..+|.-.
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1222344577889999999999888887777888899888888643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.52 E-value=4.1 Score=37.82 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 22 QAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
..-.|+++.|..++..+++ ..-+.++..+.++|-.++|+++- +|+. .-.....+.|+++.|.+
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-----~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-----EIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFD 658 (794)
T ss_pred HhhhccccccccccccCch-----hhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHH
Confidence 3445566666555444432 23345555566666666555432 2221 12233455666666666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
+..+.. +..-|..|.++....+++..|.+.|.+.... ..|+-.+...|+.+....+-....+.| .
T Consensus 659 la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 659 LAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 655542 5556777777777777777777777665433 345555666666655555555555444 2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
.| ...-+|...|+++++.+++..
T Consensus 724 ~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 22 222344555777776666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.26 E-value=17 Score=34.58 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=157.4
Q ss_pred hhHHHHHHHHhcCcCCCCcchHHHHH----HH-HHhcCcHHHHHHHHHHHHh-------cCCCCCcccHHHHHHHHHhcC
Q 014978 27 QTRARENFFENLPDKMRGPDTCSALL----HS-YVQNKKSAEAEALMEKMSE-------CGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~li----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+...|.++++.+.+.+ +...-..+. .+ +....|++.|...|....+ .| .+.....+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567888888877753 222222222 22 4467899999999999877 55 3446677888888754
Q ss_pred -----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCC
Q 014978 95 -----QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI----KMEL 164 (415)
Q Consensus 95 -----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~ 164 (415)
+.+.|..++........|+....-..+..... ..+...|.++|......|.. ..+-.+..+|. -..+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 44558999988877666666665555444444 35788999999999999842 22323333332 2357
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH-HH---Hh----cCChH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-SL---VK----LGEFE 236 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~g~~~ 236 (415)
.+.|..++.+..+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+. .. .. ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchh
Confidence 899999999999987 3333322333444555 7888888888777776654 2222221111 11 01 11344
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH----hcCCHHHH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINR----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL----KKGQMEKV 308 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a 308 (415)
.+...+......| +......+-..|..- .+++.|...+......+ ....-.+...+- ... +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHH
Confidence 4555555544433 333444444443322 24666666666665543 222222222221 122 5667
Q ss_pred HHHHHHhHh
Q 014978 309 LECFKKAIG 317 (415)
Q Consensus 309 ~~~~~~~~~ 317 (415)
.++++.+.+
T Consensus 529 ~~~~~~~~~ 537 (552)
T KOG1550|consen 529 KRYYDQASE 537 (552)
T ss_pred HHHHHHHHh
Confidence 777776655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.21 E-value=2.5 Score=36.17 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 226 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 226 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
.+-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..=.+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 355666777777777776655432 2266666666667777666666555444444
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.16 E-value=7.9 Score=31.95 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHhcccC-CCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHc
Q 014978 305 MEKVLECFKKAIGSVRK-WVPDHRLITAAYN-----KLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 305 ~~~a~~~~~~~~~~~~~-~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.+.|.+.|+.+...... ++|...+...|+- .|-..|+.++|.++.+...+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35566666666553322 6666665544433 345679999998887776553
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.9 Score=32.32 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---ccccChhhHHHHHHHHHhcCChHHH
Q 014978 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
+.|.+.|-++...+.--++.....+...|. ..+.++++.++-...+. +..+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333333 34444444444444432 1133444444444444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=8 Score=30.56 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=56.1
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCH-HHHHHHHHHHH
Q 014978 264 YINRNQLEMAESFYNRLVTKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLE 337 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 337 (415)
+...|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..++++ +.|+. ..+..-..+|.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEAYE 179 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHHHH
Confidence 455677777777776666542 121 12333444566677777777777777766 33322 33333345677
Q ss_pred HcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 338 EQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
+...+++|+.-|+.+.+..|....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHH
Confidence 7777778887777777776664333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.4 Score=37.66 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
.|..|.++|.+++|+..|.......| +++.+..-..+|.+..+|..|..-.+....
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556677777777777776666655 666666666777777777766655555444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.85 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=15.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 331 AAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 331 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
.+..++.+.|++++|.+.|+++.+.-|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344455556666666666666655444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.65 E-value=7 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014978 126 SQNDKETAEKAFLELKK 142 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~ 142 (415)
..|+|++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.1 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.44 E-value=8.2 Score=29.70 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.++++.+.+.+++|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34555566667777777777777777777765543333 33334444433332222221 2233333333333332
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
-- ..+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 12444556666777777777766654221 22223445555555555554444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.30 E-value=1 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988764
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=88.75 E-value=23 Score=33.92 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 316 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 316 (415)
......++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+....-.+...+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455555555555555555554433211 12234444444555555554444444333
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.35 E-value=5.6 Score=31.85 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYTTWELLTWG 298 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 298 (415)
|....++.+.+.+...+++....+-.+.+ +.+..+-..+++.+|-.|++++|..-++..-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999999988877765 4477788889999999999999988777665432 22344566666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.3 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444445555555555544443
|
... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.91 E-value=22 Score=32.70 Aligned_cols=165 Identities=17% Similarity=0.154 Sum_probs=115.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
|-...-+++..+..+...+-...+..+|...| .+...|..++.+|..+ ..++-..+++++.+..-.|+..-..|+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55566778888888888888999999998876 5677888889999888 66778888888877655566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcC
Q 014978 124 CASQNDKETAEKAFLELKKTKIDP--D---WISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNM 197 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 197 (415)
|-+ ++.+.+..+|.++..+=++. + ...|..+...- ..+.+..+.+...+... |...-.+.+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 655 88888888888877553221 1 12344433321 35666677776666543 3333445566666778888
Q ss_pred CChHHHHHHHHHHHHcc
Q 014978 198 GYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~~ 214 (415)
.++.+|++++..+.+..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 88999999888776654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.9 Score=27.97 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 68 (415)
.....|+.+...++.++|+..+..+.+..+++ .+...++.+|+..|++.++++.-
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888877764432 35566777888888887776643
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.24 Score=37.22 Aligned_cols=50 Identities=26% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444433323334444444444444444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.82 E-value=11 Score=35.09 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555544443321 3344555555555555555555554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.2 Score=23.19 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666777777777766655
|
... |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=9.2 Score=35.55 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=50.3
Q ss_pred hcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
-.|+...|...+....-. ....-.....|.....+.|....|..++.+..... ...+.++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666666554332 11122334455566666666666666666665554 3344556666677777777777777
Q ss_pred HHHHHHhc
Q 014978 171 TLKEMEKR 178 (415)
Q Consensus 171 ~~~~~~~~ 178 (415)
.|.+..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 77766655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.11 E-value=4.9 Score=32.17 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHH
Q 014978 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAA 123 (415)
Q Consensus 49 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~ 123 (415)
+..+..+.+.+..++++...++-.+.. +.|...-..++..++-.|++++|..-++-.... ..+-...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344555666667777776666655543 334555566667777777777776555544332 34444556655554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=24 Score=32.08 Aligned_cols=88 Identities=11% Similarity=-0.123 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHHHHHhcCcC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 20 VAQAQALQTRARENFFENLPDK-MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
..+...|+++.+...+..+... .....+-..+++...+.|+++.|..+-+-|....+. ++.......-..-..|-+++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 3445566666666666555443 234445566666666667777776666666654432 22222222212223344556
Q ss_pred HHHHHHHHhh
Q 014978 99 VPQMLQELKK 108 (415)
Q Consensus 99 a~~~~~~~~~ 108 (415)
+.-.|+++..
T Consensus 410 ~~~~wk~~~~ 419 (831)
T PRK15180 410 SYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhc
Confidence 6666655543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.63 E-value=16 Score=29.78 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHc--ccccChh---hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 198 GYKDEVLRIWKKMMSL--FAKMNDA---EYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 198 ~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
.++++|+..|+..-+- |-..+.. .+.-+...-...+++.+|+++|+++.......+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4455555555554432 1111111 233333444567788888888888776654433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.43 E-value=4.5 Score=31.32 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
+++|...|++..+. .|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44555566655554 667777766665542 3455555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.43 E-value=19 Score=30.45 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-ccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
++..+...++..++..+++.+-.++++..... ++.-|...|..+|......|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444455555555555555555444333 23334444555555555555544444333
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.6 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCChhHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHL 348 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 348 (415)
...+.++|+..|..+++.... .|+ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777663111 111 13556666677777777666654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.3 Score=21.65 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=8.6
Q ss_pred HHHHHHHhcCcHHHHHHHH
Q 014978 50 ALLHSYVQNKKSAEAEALM 68 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~ 68 (415)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.86 E-value=9.2 Score=29.69 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 132 TAEKAFLELKKTKIDPDW-ISYSTLTSLYIKME----L-------PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+|..-|++.+.. .|+- .++..+..+|...+ + +++|...|++.... .|+...|+.-+....
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 334444444443 3443 45555666555432 1 34444445544443 566666666665542
Q ss_pred hHHHHHHHHHHHHc
Q 014978 200 KDEVLRIWKKMMSL 213 (415)
Q Consensus 200 ~~~a~~~~~~~~~~ 213 (415)
+|-++..++.+.
T Consensus 125 --kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 --KAPELHMEIHKQ 136 (186)
T ss_dssp --THHHHHHHHHHS
T ss_pred --hhHHHHHHHHHH
Confidence 344455554444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.59 Score=35.06 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3455555666666666666666554444566666667777776665666665551 111223344555555555
Q ss_pred hHHHHHHHHH
Q 014978 235 FEKAENIYDE 244 (415)
Q Consensus 235 ~~~a~~~~~~ 244 (415)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.66 E-value=14 Score=31.01 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh-
Q 014978 155 LTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK- 231 (415)
Q Consensus 155 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 231 (415)
=|.++...+++.+++...-+.-+. .++| .....-|-.|.+.+++..+.++-..-.+..-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356666666666666554443321 1222 23334445566666666666666555543222222335555544432
Q ss_pred ----cCChHHHHHHH
Q 014978 232 ----LGEFEKAENIY 242 (415)
Q Consensus 232 ----~g~~~~a~~~~ 242 (415)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666655
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=7.2 Score=36.19 Aligned_cols=104 Identities=13% Similarity=-0.043 Sum_probs=79.5
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014978 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
.|+...|.+.+.........-..+....|.....+.|-..+|-.++.+.+.. ....+-++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~---~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI---NSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh---cccCchHHHhcchhHHHHhhhHHHH
Confidence 5888888888877765432223345566677777778888899999888772 2445567788889999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 347 HLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
+.|+++.+..+.+..+-+.|...-|++
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 999999999998888888777766644
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=85.33 E-value=9.4 Score=26.61 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
...++|..+.+.+...+- -...+--.-+..+.+.|++++| +..-.....||...|-+|.. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555555431 1111111122334455555555 22222223445555444433 24555555555555
Q ss_pred HHHhCC
Q 014978 139 ELKKTK 144 (415)
Q Consensus 139 ~~~~~g 144 (415)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.14 E-value=38 Score=32.80 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=105.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCCCC--cccHHHHHHHHH-hcCCcCcHHHHHHHHhhc-CCCCHh---
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSE-CGFLKC--PLPYNHMLNLYI-SNGQLDKVPQMLQELKKN-TSPDVV--- 115 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~~~~--- 115 (415)
+...|..|| ..|++.++-+.+ ..++|. ..++-.+...+. ...+++.|...+.+.... ..++..
T Consensus 29 ~l~~Y~kLI---------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLI---------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHH---------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 445555554 467788877773 333332 233444555554 577888888888876443 222221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCHH
Q 014978 116 --TYNLWLAACASQNDKETAEKAFLELKKTKID----PDWISYSTL-TSLYIKMELPEKAATTLKEMEKRT---CRKNRV 185 (415)
Q Consensus 116 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 185 (415)
.-..++..+.+.+... |...+++.++.--. +=...+..+ +..+...+++..|.+.++.+...- ..|...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234556666666555 88888776654211 111222333 223333478888888887776432 123333
Q ss_pred HHHHHHHHH--HcCCChHHHHHHHHHHHHcccc---------cChhhHHHHHHHH--HhcCChHHHHHHHHHHHh
Q 014978 186 AYSSLLSLY--TNMGYKDEVLRIWKKMMSLFAK---------MNDAEYTCVISSL--VKLGEFEKAENIYDEWES 247 (415)
Q Consensus 186 ~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 247 (415)
++..++.+. ...+.++++.+.++.+...... |...+|..++..+ ...|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444443 3445567777777777543221 2334566665554 456777777777666543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.79 E-value=72 Score=35.65 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=97.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFL--KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
.+..+-.+.+.+.+|...++.-.....+ .....|-.+...|..-++++....+...-. ..|+ ...-+......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~--a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF--ADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh--cCcc---HHHHHHHHHhh
Confidence 4556677889999999998884211100 112234444558999999999888877421 1222 23345556788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHcCCChHHHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL-LSLYTNMGYKDEVLRI 206 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~ 206 (415)
|++..|...|+.+.+.+ ++...+++-++......|.++......+-.... ..+....++++ +.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999999875 444667888888777788888887766665544 23333344433 2444566666666555
Q ss_pred HH
Q 014978 207 WK 208 (415)
Q Consensus 207 ~~ 208 (415)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.64 E-value=40 Score=32.64 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=114.1
Q ss_pred hHHHHHHHHhcCcC-CC----CcchHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCc
Q 014978 28 TRARENFFENLPDK-MR----GPDTCSALLHSYV-QNKKSAEAEALMEKMSECGFLKCPL-----PYNHMLNLYISNGQL 96 (415)
Q Consensus 28 ~~~A~~~~~~~~~~-~~----~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 96 (415)
+..|++.++.+.+. .+ ...++-.+...+. ...+++.|+..+++....--.++.. +...++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44567777777643 22 3456667777776 6899999999999876543222221 123455667776665
Q ss_pred CcHHHHHHHHhhc-CC----CCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 014978 97 DKVPQMLQELKKN-TS----PDVVTYNLW-LAACASQNDKETAEKAFLELKKTK---IDPDWISYSTLTSLYI--KMELP 165 (415)
Q Consensus 97 ~~a~~~~~~~~~~-~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~--~~~~~ 165 (415)
. |...+++..+. .. +-...|..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 99999987665 12 222233333 333334489999999998886542 2344444555555443 45667
Q ss_pred HHHHHHHHHHHhcCC---------CCCHHHHHHHHHHH--HcCCChHHHHHHHHHHHH
Q 014978 166 EKAATTLKEMEKRTC---------RKNRVAYSSLLSLY--TNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 212 (415)
+++.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888854322 23556677776655 456777788777776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=84.41 E-value=15 Score=30.13 Aligned_cols=104 Identities=10% Similarity=0.080 Sum_probs=50.1
Q ss_pred hHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 47 TCSALLHSYV--QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 47 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
.|..+++++. ..+++++|.+.+-. -.+.| .....++.++...|+.+.|+.+++..... ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-
Confidence 4455555543 44566666655521 11111 11224566666667777777777665421 1122222333333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
...+.+.+|..+-+...+.. ....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 45567777766666554421 1234444555444
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.89 E-value=12 Score=27.05 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=26.6
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
-+..... ..+.|++.....-+.+|.+.+|+..|.++|+-++..
T Consensus 71 glN~l~~--yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFD--YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhc--cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444 456666666666666676667777777666666543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.58 E-value=3.1 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 120 WLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.57 E-value=30 Score=30.27 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=80.0
Q ss_pred CCCCHhHHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 110 TSPDVVTYNLWLAACASQN------------DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.|.|+.+|-.++..--..- -.+.-+.+++++++.+ +.+......++..+.+..+.++..+.++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666666654322221 1344566777777663 45555667777777777777887888888877
Q ss_pred cCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHc------cc------ccC--hh---hHHHHHHHHHhcCChHH
Q 014978 178 RTCRKNRVAYSSLLSLYTN---MGYKDEVLRIWKKMMSL------FA------KMN--DA---EYTCVISSLVKLGEFEK 237 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~------~~~--~~---~~~~l~~~~~~~g~~~~ 237 (415)
.. +-+...|...+..... .-.++....+|.+..+. +. .++ .. .+..+...+...|..+.
T Consensus 94 ~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 KN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred HC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 62 3356667666655443 23455666666554432 10 000 01 12233333456788888
Q ss_pred HHHHHHHHHhccC
Q 014978 238 AENIYDEWESISG 250 (415)
Q Consensus 238 a~~~~~~~~~~~~ 250 (415)
|..+++.+.+.++
T Consensus 173 Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 173 AVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHc
Confidence 8888887777654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=28 Score=29.71 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=101.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP----EKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 186 (415)
.+|.......+..+...|.. .+...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 34444444455555544432 22222333332 23444444555555555542 3455555554332 344444
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHH
Q 014978 187 YSSLLSLYTNMGYK-----DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 261 (415)
Q Consensus 187 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (415)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++ ..+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 44444444443221 12222222222 12244444455555555555 334444444443 22333444444
Q ss_pred HHHHhcC-cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 262 AAYINRN-QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 262 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .++..+-..++. ++ .....+.++...|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-----~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-----GT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-----Cc--hHHHHHHHHHhcC
Confidence 4444432 13345555555443 23555556666666666663 455555444441 22 2234556666666
Q ss_pred ChhHHHHHHHHHHHcCC
Q 014978 341 DIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~ 357 (415)
.. +|...+..+.+..+
T Consensus 250 ~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CH-hHHHHHHHHHhhCC
Confidence 64 56666666665444
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.21 E-value=3.5 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 340 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
|+.+.+..+|+++....+.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888777777777776653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.19 E-value=37 Score=31.16 Aligned_cols=240 Identities=10% Similarity=0.099 Sum_probs=125.2
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcC------CHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQN------DKETAEKAFLELKKTK-I-DPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~g-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+|+...+. -++...|+..|..|...- .+.....+++...+.+ . +.....|..+.-.++......++.
T Consensus 303 ~v~ee~v~~-l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a--- 378 (568)
T KOG2396|consen 303 AVYEEAVKT-LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA--- 378 (568)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH---
Confidence 555554432 334445555555554322 3444455555554433 2 223445666666665554433322
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcC-CChHHH-HHHHHHHHHcccccChhhHHHHHHHHHhcCC-hHH--HHHHHHHHHh
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNM-GYKDEV-LRIWKKMMSLFAKMNDAEYTCVISSLVKLGE-FEK--AENIYDEWES 247 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~--a~~~~~~~~~ 247 (415)
..+...++..|...|..-++..... .+++-- .+.+......-..+....|+... .|+ .+. -..++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 2222222344666666555555422 222221 22222222221122222333332 222 111 1122233333
Q ss_pred ccCCCCCchH-HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHhHhcccCCCC
Q 014978 248 ISGTGDPRVP-NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL--KKGQMEKVLECFKKAIGSVRKWVP 324 (415)
Q Consensus 248 ~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~p 324 (415)
.+ .++..++ +.++..+.+.|-..+|..++..+... ++|+...|..+|+.-. ...+...+..+++.|... +..
T Consensus 454 ~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~---fg~ 528 (568)
T KOG2396|consen 454 VI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE---FGA 528 (568)
T ss_pred hc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH---hCC
Confidence 33 3444443 56777778888888888888888875 3457777777775422 223477778888888874 336
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
|+..|...+.-=...|..+.+-.++.++.+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777777666678888888887777665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.04 E-value=38 Score=31.12 Aligned_cols=90 Identities=6% Similarity=0.017 Sum_probs=58.7
Q ss_pred HHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCCcCcHHHHHHHHh
Q 014978 30 ARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQMLQELK 107 (415)
Q Consensus 30 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 107 (415)
.-..+|+.+...-+ |+..|...+..+-+.+.+.+...+|.+|.... +.++..|........ ..-+++.|..+|..-.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34455555555534 88888888888888888888999999888753 345555654443333 3334778888887766
Q ss_pred hcCCCCHhHHHHH
Q 014978 108 KNTSPDVVTYNLW 120 (415)
Q Consensus 108 ~~~~~~~~~~~~l 120 (415)
+..|.+...|...
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 6555555554433
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.96 E-value=55 Score=32.87 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcccccC---hhhHHHHHHHHHhcCCh--HHHHHHHHHHHhccCCCCCchHHH-
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEF--EKAENIYDEWESISGTGDPRVPNI- 259 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~- 259 (415)
.|..|+..|...|..++|+++|.+.......-| ...+..++..+.+.+.. +..++.-+...+.........+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477888899999999999999988876321011 11234456655555554 555555555544332222222221
Q ss_pred -----------HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC--------HHHHHHH-----HHHh
Q 014978 260 -----------LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--------MEKVLEC-----FKKA 315 (415)
Q Consensus 260 -----------l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 315 (415)
-+-.|+.....+.+..+++.+....-.++....+.++..|...=+ .+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 234466677788888899988866555677777777777654211 2223222 2222
Q ss_pred HhcccCCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHH--------------cCCCCHHHHHHHHHHHHhc
Q 014978 316 IGSVRKWVPD--------HRLITAAYNKLEEQGDIDGAEHLLVTLRN--------------AGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 316 ~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~ 373 (415)
.+......|. ...|....-.+.+.|+.++|+.++-.... .+..+...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 2211222222 22333333345588899999988776554 1222557888899988877
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.68 E-value=3.2 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=8.0
Q ss_pred HHHHcCCChHHHHHHHHHHH
Q 014978 192 SLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~ 211 (415)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33334444444444444333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.39 E-value=55 Score=32.49 Aligned_cols=227 Identities=16% Similarity=0.074 Sum_probs=124.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLT-SLYIKMELPEKAATTLKEMEKR----TCRKNRVAYSSLLS 192 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 192 (415)
....++++|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999988876542222211 233332 2234568899999888877654 12234556777778
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHH---HHH--HHHHhcCCh--HHHHHHHHHHHhccC---C---CCCchHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT---CVI--SSLVKLGEF--EKAENIYDEWESISG---T---GDPRVPNI 259 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~g~~--~~a~~~~~~~~~~~~---~---~~~~~~~~ 259 (415)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+. .+....+........ + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999999988776653333443332 222 234556632 333333333322211 1 11233444
Q ss_pred HHHHHHhc-CcHHHHHHHHHHHHhCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHhHhcccCC--CCCHHHHHHHHH
Q 014978 260 LLAAYINR-NQLEMAESFYNRLVTKGIKPCYTTWE--LLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDHRLITAAYN 334 (415)
Q Consensus 260 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~~~~~~l~~ 334 (415)
+..++.+. +...++..-+.-.......|-...+. .|+......|++++|...+.++......- .++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 22233333333333333333222222 56777888999999999998887732222 233333333333
Q ss_pred H--HHHcCChhHHHHHHHH
Q 014978 335 K--LEEQGDIDGAEHLLVT 351 (415)
Q Consensus 335 ~--~~~~g~~~~a~~~~~~ 351 (415)
. -...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 3 3356787777766655
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=31 Score=31.39 Aligned_cols=210 Identities=9% Similarity=-0.011 Sum_probs=102.3
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCCCCcc--hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCC
Q 014978 20 VAQAQALQTRARENFFENLPDKMRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQ 95 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 95 (415)
....+.|+.+-+..+++.-.. |+.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 7 ~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 7 CDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 355678888888777764222 2221 1233445556678876 344445566555432 11233455667788
Q ss_pred cCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS--YSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+.+..+++.-... ...+.. -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 77665555432111 011111 123344455667654 4455555665554321 123445555677765544443
Q ss_pred HHHHhcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh---HHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 173 KEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 173 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ...++...+..|+.+-+.-+ .
T Consensus 156 ----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L----l 222 (413)
T PHA02875 156 ----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF----I 222 (413)
T ss_pred ----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH----H
Confidence 3443332 22223333 333446544 4455566666665432 22444445566776544444 4
Q ss_pred hccCCCC
Q 014978 247 SISGTGD 253 (415)
Q Consensus 247 ~~~~~~~ 253 (415)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 4555544
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=81.80 E-value=26 Score=29.46 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT----- 195 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 195 (415)
|.+++..++|.++....-+--+..-+..+.+...-|-.|.+.+.+..+.++-....+..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 677788888888776655443322122233445556668888888888887777665311222334666666554
Q ss_pred cCCChHHHHHHH
Q 014978 196 NMGYKDEVLRIW 207 (415)
Q Consensus 196 ~~~~~~~a~~~~ 207 (415)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 458888887776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.66 E-value=9.9 Score=26.15 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.0
Q ss_pred HhcCCcCcHHHHHH
Q 014978 91 ISNGQLDKVPQMLQ 104 (415)
Q Consensus 91 ~~~~~~~~a~~~~~ 104 (415)
.+.|++++|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 50 MNRGDYQSALQLGN 63 (115)
T ss_pred HccchHHHHHHhcC
Confidence 33444444444433
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.49 E-value=47 Score=31.14 Aligned_cols=160 Identities=10% Similarity=-0.021 Sum_probs=96.0
Q ss_pred CCChHHHHHHHHHHHHcccccC------------hhhHHHHHHHHHhcCChHHHHHHHHHH-------HhccCCC-----
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMN------------DAEYTCVISSLVKLGEFEKAENIYDEW-------ESISGTG----- 252 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~----- 252 (415)
...++++...|....... .|+ ..+...+...+...|+.+.|..++.+. ....+.|
T Consensus 251 s~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345667777666655531 221 223445556677888877776666543 2222222
Q ss_pred --------CCchHHH---HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhHhcc-
Q 014978 253 --------DPRVPNI---LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL-KKGQMEKVLECFKKAIGSV- 319 (415)
Q Consensus 253 --------~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~- 319 (415)
|...|-+ -+..+.+.|-+..|.++-+.+......-|+.....+|..|+ ++.+++-.+++++......
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1222222 24556678999999999998888655446777777888775 7788888888888774421
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCC
Q 014978 320 RKWVPDHRLITAAYNKLEEQGD---IDGAEHLLVTLRNAGH 357 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 357 (415)
...-||..--..|...|.+... -+.|...+.++....|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2234555444455555655544 4566666666665543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.19 E-value=25 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCH
Q 014978 228 SLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 305 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 305 (415)
.+...|++++|...++.........+ ..+--.|.+.....|.+++|...++...+.+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 34455555555555554433210000 00111233444445555555555544443221 111122223344455555
Q ss_pred HHHHHHHHHhHh
Q 014978 306 EKVLECFKKAIG 317 (415)
Q Consensus 306 ~~a~~~~~~~~~ 317 (415)
++|..-|..++.
T Consensus 176 ~~Ar~ay~kAl~ 187 (207)
T COG2976 176 QEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.81 E-value=32 Score=28.74 Aligned_cols=50 Identities=6% Similarity=0.116 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWI---SYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
..++++|+.-|++..+..-..... ....++..+.+.+++++....+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345666666666665542122222 23345566666666666666666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.33 E-value=61 Score=31.67 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHhhhhHHHHHHHHhcCcCCC---CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCc
Q 014978 22 QAQALQTRARENFFENLPDKMR---GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 98 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (415)
+.+.+.+++|+..-+......| -...+...|..+...|++++|-...-.|... +..-|..-+.-+...++...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 3677889999999888777655 3456788899999999999998888888653 44556666666665555443
Q ss_pred HHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHH------------------HHHHhCCCCCCHHHHHHHHHHH
Q 014978 99 VPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAF------------------LELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 99 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
...+ +... ...+...|..++..+.. .+...-.++. .+..+. .. +...-..|+..|
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se-~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SE-STALLEVLAHLY 515 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-cc-chhHHHHHHHHH
Confidence 3222 1221 11233445555554444 1111111111 011111 11 112233477778
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014978 160 IKMELPEKAATTLKEME 176 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~ 176 (415)
...+++.+|++++-.+.
T Consensus 516 l~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHccChHHHHHHHHhcc
Confidence 88888888887776654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=37 Score=28.99 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=22.8
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
++.......+.++...|..+ +...+..+... +|...-...+.++.+.|+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGM 83 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 45555555555665555432 33333333332 334444444555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-13
Identities = 73/489 (14%), Positives = 136/489 (27%), Gaps = 166/489 (33%)
Query: 31 RENFFENL-----PDKMRG-------------PDTCSA--LLHSYVQNKKSAEAEALMEK 70
+ F +N D + D S L + +K+ + +E+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 71 MSEC--GFLKCPL------P------YNHMLN-LYISNGQLDK--VP---------QMLQ 104
+ FL P+ P Y + LY N K V Q L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 105 ELKKNTSPDVVTYNL------WLAACASQNDKETAEKAF----LELKKTKIDPDWISYST 154
EL+ +V+ + W+A + K + F L LK +
Sbjct: 146 ELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--M 201
Query: 155 LTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYS-----SLLSLYTNMGYKDEV- 203
L L ++ + ++ + R+ S LL L V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------LNVQ 254
Query: 204 -LRIWK------KMM------SLFAKMNDAEYTCVISSLVKLGEFEKAE--NIYDEWESI 248
+ W K++ + ++ A T + + E ++ ++
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDC 313
Query: 249 SG--------TGDPRVPNILLAA------------YINRNQLEMA-ESFYNRLVTKGIKP 287
T +PR +I+ + ++N ++L ES N L +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 288 CY--------------TTWELLTWGYLKKGQMEKVL-ECFKKAIGSVRKW-------VPD 325
+ L+ W + K + V+ + K ++ V K +P
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPS 430
Query: 326 ---------------HRLITAAYNKLE--EQGD-----IDG--AEHLLVTLRNAGHVSTE 361
HR I YN + + D +D H+ L+N H E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PE 488
Query: 362 IYNSLLRTY 370
+
Sbjct: 489 RMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 33/268 (12%), Positives = 83/268 (30%), Gaps = 63/268 (23%)
Query: 12 RAQSYRQRVAQAQALQTRARENFFENL-PDKMRG--------PDTC---SALLHSYVQNK 59
+++ L T E+ L P + R P + + LL +
Sbjct: 343 TWDNWKH--VNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 60 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT-YN 118
++ ++ K+ + ++ + I + L+ ++ E + S +V YN
Sbjct: 400 IKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRS--IVDHYN 454
Query: 119 LWLAAC-----ASQNDK-------------ETAEKAFLELKKTKIDPDWISYSTLTSLYI 160
+ D+ E E+ + +D ++ +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLE-QKIRHDST 512
Query: 161 KMELPEKAATTLKEME--KRTCRKNRVAYSSLLSLYTN--MGYKDEVLRIWKKMMSLFAK 216
TL++++ K N Y L++ + ++ ++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC----------- 561
Query: 217 MNDAEYTCVISSLVKLGEFEKAENIYDE 244
++YT L+++ + E I++E
Sbjct: 562 ---SKYTD----LLRIALMAEDEAIFEE 582
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 8e-11
Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 8/236 (3%)
Query: 2 ERRRPHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKM---RGPDTCSALLHSYVQN 58
+ + ++ +R+ L ++ E+ + + + LL
Sbjct: 46 AKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGK 105
Query: 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL----KKNTSPDV 114
+A + S+ + QL +L +K +
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT-LK 173
YN + A Q + +K + PD +SY+ + + L+
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229
+M + + + + LLS V ++ + ++ +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 6e-07
Identities = 17/190 (8%), Positives = 50/190 (26%), Gaps = 4/190 (2%)
Query: 104 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK---KTKIDPDWISYSTLTSLYI 160
Q + S + C + A + + + Y+ + +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMND 219
+ ++ L ++ + ++Y++ L + R ++M K+
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 220 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279
++S + + + + P + LL ++ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 280 LVTKGIKPCY 289
L T
Sbjct: 297 LKTLQCLFEK 306
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 34/273 (12%), Positives = 75/273 (27%), Gaps = 22/273 (8%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142
Y LN +L + L + ++ ++
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKI-- 331
Query: 143 TKIDPDWIS-YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201
+IDP + Y + + K ++ R + V + ++ Y +
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390
Query: 202 EVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 260
E R + K ++ + S GE ++A + Y +
Sbjct: 391 EARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----FQGTHLPY 444
Query: 261 L---AAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFKKAI 316
L ++ + +A + + L K M+ + F+ A+
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 317 GSVRKWVPDHRLITAAYNKL----EEQGDIDGA 345
V+K + + A + L + D A
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 32/310 (10%), Positives = 78/310 (25%), Gaps = 50/310 (16%)
Query: 49 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 108
L+ + AE + ++ G K + + V + ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSIN--GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 109 NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEK 167
++ Y L LA+ +K +L P+ +++ + Y+ + +
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDL--VDRHPEKAVTWLAVGIYYLCVNKISE 391
Query: 168 A---------------------ATTLKEMEK------------RTCRKNRVAYSSLLSLY 194
A A + + R + + Y L +
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451
Query: 195 TNMGYKDEVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGTGD 253
+G + +LF D + + + A N + +
Sbjct: 452 MQLGNILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509
Query: 254 PRVPNILLA------AYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQME 306
AY + A N+ + + + YL K
Sbjct: 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPG 567
Query: 307 KVLECFKKAI 316
+ +++
Sbjct: 568 LAITHLHESL 577
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 56/310 (18%), Positives = 116/310 (37%), Gaps = 45/310 (14%)
Query: 55 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ---ELKKNTS 111
+ Q ++ + + Y+++ N+Y GQL + + + LK +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-- 99
Query: 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKA-- 168
+ Y AA + D E A +A++ + +PD + S L +L + E+A
Sbjct: 100 -FIDGYINLAAALVAAGDMEGAVQAYV--SALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 169 ----ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 224
A + VA+S+L ++ G + ++K ++L N +
Sbjct: 157 CYLKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYI 207
Query: 225 VI-SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRL 280
+ + L + F++A Y S+ P + Y + +++A Y R
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 281 VTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---L 336
+ ++P + L +KG + + +C+ A+ + P H + N
Sbjct: 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL----RLCPTH--ADSLNNLANIK 315
Query: 337 EEQGDIDGAE 346
EQG+I+ A
Sbjct: 316 REQGNIEEAV 325
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 19/126 (15%)
Query: 228 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRLVTKG 284
+ G+FE AE + +P +LL + + +L+ + F +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 285 IKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQG 340
P + L Y ++GQ+++ +E ++ A+ + PD I N L G
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL----RLKPDF--IDGYINLAAALVAAG 115
Query: 341 DIDGAE 346
D++GA
Sbjct: 116 DMEGAV 121
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 44/282 (15%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLE 139
Y ++ ++ G ++ Q L+ N PD+ +L + E A+ +L
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNL-LKALGRLEEAKACYL- 159
Query: 140 LKKTKIDPDW-ISYSTLTSLYIKMELPEKA------ATTLKEMEKRTCRKNRVAYSSLLS 192
K + P++ +++S L ++ A A TL AY +L +
Sbjct: 160 -KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------NFLDAYINLGN 211
Query: 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGT 251
+ D + + + +SL N A + + + G + A + Y +
Sbjct: 212 VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--- 266
Query: 252 GDPRVPNILL---AAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEK 307
P P+ A + + AE YN + + P + + L ++G +E+
Sbjct: 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEE 323
Query: 308 VLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGDIDGAE 346
+ ++KA+ + P+ A N L++QG + A
Sbjct: 324 AVRLYRKAL----EVFPEF--AAAHSNLASVLQQQGKLQEAL 359
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 48/281 (17%), Positives = 107/281 (38%), Gaps = 52/281 (18%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLE 139
+ + NL + G+L++ + ++ P+ NL +Q + A F
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCV-FNAQGEIWLAIHHFE- 193
Query: 140 LKKTKIDPD-WISYSTLTSLYIKMELPEKA------ATTLKEMEKRTCRKNRVAYSSLLS 192
K +DP+ +Y L ++ + + ++A A +L + V + +L
Sbjct: 194 -KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-------PNHAVVHGNLAC 245
Query: 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGT 251
+Y G D + +++ + L + + + Y + ++L + G +AE+ Y+ +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--- 300
Query: 252 GDPRVPNILLAAYINR-------NQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKG 303
P + + N +E A Y + + + P + L ++G
Sbjct: 301 -CPTHAD----SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQG 353
Query: 304 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGD 341
++++ L +K+AI + P A N L+E D
Sbjct: 354 KLQEALMHYKEAI----RISPTF--ADAYSNMGNTLKEMQD 388
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 36/312 (11%), Positives = 91/312 (29%), Gaps = 32/312 (10%)
Query: 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 104
D +L + N L + E + + + +++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSH 80
Query: 105 ELKKNTSPDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKM 162
+L + V++ + + E A + K T ++ + ++ +
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS--KATTLEKTYGPAWIAYGHSFAVE 138
Query: 163 ELPEKA------ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216
++A A L + + + Y R + + +S+
Sbjct: 139 SEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--A 189
Query: 217 MNDAE-YTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINR------- 267
D V + GE++ AE + + E I G+ + N
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249
Query: 268 NQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326
+ A ++ + + + P +T+ + + + G E ++ F A+G R
Sbjct: 250 KKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Query: 327 RLITAAYNKLEE 338
++
Sbjct: 308 TMLGHCIEMYIG 319
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 35/283 (12%), Positives = 77/283 (27%), Gaps = 42/283 (14%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142
+ N + ++ +L+ YN + A+K
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 143 T-KIDPDW-ISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMGY 199
+ + +K A + +++ T Y + S + N G
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGN 123
Query: 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 259
++ +K + Y + E+ KA++ + + + PNI
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKEYVKADSSFVKVLELK-------PNI 175
Query: 260 LLAAYINR----------NQLEMAESFYNRLV------TKGIKPCYTT-WELLTWGYLKK 302
+ Y+ R + +A+ +Y +L+ K E + + Y
Sbjct: 176 YIG-YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK----LEEQGD 341
K +K + P + A + LE
Sbjct: 235 RDKVKADAAWKNIL----ALDPTN---KKAIDGLKMKLEHHHH 270
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 45/368 (12%), Positives = 90/368 (24%), Gaps = 39/368 (10%)
Query: 6 PHGAQVRAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQ-------- 57
GA + R QA + + + ++ +
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184
Query: 58 -NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN-GQLDKVPQMLQELKKNTSPDVV 115
+ A AL+ + + Y +L + + +
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244
Query: 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175
+N+ A+ + + P SY L E ++ ++
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKA 302
Query: 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235
+ Y +Y + ++K SL + Y + L K G+F
Sbjct: 303 VD-LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACLLYKQGKF 360
Query: 236 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY---------------NRL 280
++E ++E + T P VP +R + A Y
Sbjct: 361 TESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Query: 281 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LE 337
G L + + ++ KA + P A
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC----ELDPRS--EQAKIGLAQLKL 473
Query: 338 EQGDIDGA 345
+ ID A
Sbjct: 474 QMEKIDEA 481
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 22/193 (11%), Positives = 59/193 (30%), Gaps = 4/193 (2%)
Query: 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 217
+ ++AA + +KN + Y + + ++V I+ +++++
Sbjct: 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 354
Query: 218 NDAEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESF 276
Y + + + I+ + E V L+ Y +++ +A
Sbjct: 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKI 413
Query: 277 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336
+ + K + + + F++ + S I A +
Sbjct: 414 FELGLKKYGDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472
Query: 337 EEQ-GDIDGAEHL 348
E GD+ +
Sbjct: 473 ESNIGDLASILKV 485
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 34/344 (9%), Positives = 86/344 (25%), Gaps = 27/344 (7%)
Query: 12 RAQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 71
+ Q + A+AL+ A L DT L + + EA
Sbjct: 3 HHHHHHQW-SGARALE--ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNA 59
Query: 72 SECGFLKC----PLPYNHMLNLYISNGQLDK-VPQMLQELKKNTSPDVVTYNLWLAACAS 126
L + + + + +P + Q VV +
Sbjct: 60 LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQA 118
Query: 127 QNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 185
+ + + P+ ++ ++ +E + L + T + V
Sbjct: 119 LETVQRLLPVLC--QAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT-PEQVV 175
Query: 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245
A +S + +L + + L + A + L ++ + +
Sbjct: 176 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN-GGGKQALETVQRLLPVLCQA 234
Query: 246 ESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQ 304
++ ++ + G+ P + G
Sbjct: 235 HGLT-PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNSGGKQALET 291
Query: 305 MEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGDIDGA 345
++++L +A P + A + + +
Sbjct: 292 VQRLLPVLCQAH----GLTPQQ--VVAIASNGGGKQALETVQRL 329
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 33/255 (12%), Positives = 76/255 (29%), Gaps = 39/255 (15%)
Query: 83 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141
H + +++ ++ P V +Y A +ND F K
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD--K 295
Query: 142 KTKIDPDWI-SYSTLTSLYIKMELPEKAATTLKEMEK--RTCRKNRVAYSSLLSLYTNMG 198
K+D + Y + ++ ++A K+ +K +N Y L L
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQA---GKDFDKAKELDPENIFPYIQLACLAYREN 352
Query: 199 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258
D+ ++ + F + + L +F+KA YD + + ++
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEV-PNFFAEILTDKNDFDKALKQYDLAIEL----ENKLDG 407
Query: 259 ILLAAYINR----------------NQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLK 301
Y+ A + + + P L L+
Sbjct: 408 ----IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQ 461
Query: 302 KGQMEKVLECFKKAI 316
+ +++ + F+++
Sbjct: 462 QEDIDEAITLFEESA 476
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 38/264 (14%), Positives = 81/264 (30%), Gaps = 41/264 (15%)
Query: 148 DWISYSTLTSLYIK--MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205
+W Y + + L + +++ME+ + + YS + + M E +
Sbjct: 18 EW--YKMIRQFSVPDAEILKAEVEQDIQQMEED--QDLLIYYSLMCFRHQLMLDYLEPGK 73
Query: 206 IWKKMMSLFAKMNDAEYTCVISSLV--------------KLGEFEKAENIYDEWESISG- 250
+ ++ + E + + E+ +A Y E E
Sbjct: 74 TYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF 133
Query: 251 -TGDPRVPNIL--LA-AYINRNQLEMAESFYNR-LVTKGIKPCYTTWELLTWG-----YL 300
+ D +A AY + Q ++ + L P Y+ + + Y
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEH-----LLVT 351
+K L + A+ + + R I + + + GD A V+
Sbjct: 194 DFKHYDKALPHLEAALELAMD-IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252
Query: 352 LRNAGHVSTEIYNSLLRTYAKAGK 375
+ ++ L T KAG+
Sbjct: 253 REKVPDLLPKVLFGLSWTLCKAGQ 276
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 22/250 (8%), Positives = 60/250 (24%), Gaps = 46/250 (18%)
Query: 83 YNHMLNLYISNGQLD-------KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 135
+ + Y Q + + Q + + + + + A
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALP 203
Query: 136 AF---LELKKTKIDPDWI--SYSTLTSLYIKMELPEKAATTLKE----MEKRTCRKNRVA 186
LEL + +I S + + Y + + A ++ ++
Sbjct: 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263
Query: 187 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246
L G + + ++ + + Y + L + + E +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD-- 321
Query: 247 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306
LL+ + +N E+ + E
Sbjct: 322 -------------LLSYFEKKNLHAYIEACARSAAAV---------------FESSCHFE 353
Query: 307 KVLECFKKAI 316
+ ++K +
Sbjct: 354 QAAAFYRKVL 363
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 19/155 (12%)
Query: 229 LVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRLVTKGI 285
E + A+ Y + + D R +L + + E A +
Sbjct: 81 FQTEMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136
Query: 286 KPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQG 340
P + +E L L+ + + E F+K++ + + + ++ ++
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSL----RLNRNQ---PSVALEMADLLYKER 189
Query: 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375
+ A G + +R
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 44/240 (18%)
Query: 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA------ATTLKEME 176
+ A + + K ++ D + + + E A A
Sbjct: 14 KFYKARQFDEAIEHYN--KAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--- 68
Query: 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236
R+ R Y + + +G L KK + + K T I L KL E
Sbjct: 69 ----REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI--LTKLRNAE 122
Query: 237 KAENIYDEWESISGTGDPRVPNILLAAYINR-------NQLEMAESFYNRLVTKGIKPCY 289
K + + +P + A Y ++ P
Sbjct: 123 KELKKAEAEAYV----NPEKAE----EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPED 172
Query: 290 -TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGDIDGA 345
+ K + + KAI + P+ + A K + A
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNF--VRAYIRKATAQIAVKEYASA 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.62 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.5 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.44 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.39 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.29 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.29 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.27 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.25 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.23 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.18 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.16 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.11 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.94 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.94 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.86 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.85 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.84 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.83 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.72 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.63 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.6 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.37 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.3 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.57 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.07 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.54 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.88 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.12 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.43 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.0 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.63 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.23 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.89 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.54 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.97 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.88 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.25 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 82.0 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.98 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.08 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.59 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=284.54 Aligned_cols=386 Identities=13% Similarity=0.038 Sum_probs=321.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
..+..+.+.|++++|+.+|+.+....|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 3444678899999999999999877788889999999999999999999999988653 57888999999999999999
Q ss_pred CcHHHHHHHHhhcC----------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 014978 97 DKVPQMLQELKKNT----------------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL----- 155 (415)
Q Consensus 97 ~~a~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 155 (415)
++|.++|+++.... +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhc
Confidence 99999998532211 3358899999999999999999999999998874 2233333332
Q ss_pred ---------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHH
Q 014978 156 ---------------------------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 156 ---------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 202 (415)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 45566788899999999998875 5789999999999999999999
Q ss_pred HHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 203 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
|.++|+++.+.++. +..++..++.++...|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999887543 67789999999999999999999999988654 55788889999999999999999999999987
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 283 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 283 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
.. +.+..+|+.++..|.+.|++++|+++|+++.+ ..+.+..++..++.+|.+.|++++|.++|+++.+..+.+..+
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 477 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 53 23577999999999999999999999999987 234577889999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCCC--cHHHHHHHHhC----CCCCC--HHHH-HHHHHhccCC-ccccccc
Q 014978 363 YNSLLRTYAKAGKM--PLIIVERMQKD----NVQMD--AETQ-KVLKITSEMP-VSEVSSI 413 (415)
Q Consensus 363 ~~~l~~~~~~~g~~--a~~~~~~m~~~----~~~p~--~~t~-~~l~~~~~~~-~~~~~~~ 413 (415)
|+.++..|.+.|++ |..+++++.+. +..|+ ..++ .+...+...+ .+++.+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999998 57788888776 77887 5566 5666666666 5555443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.68 Aligned_cols=366 Identities=9% Similarity=-0.034 Sum_probs=243.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHh-c--------------CCCCCcc
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-C--------------GFLKCPL 81 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~ 81 (415)
..+..+.+.|++++|+.+|+.+....+++.+++.++.+|.+.|++++|.++|+++.. . |.+++..
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 344455666666666666666654445666666666666666666666666663211 1 1122345
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcC---------------------------------------------------
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNT--------------------------------------------------- 110 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------------------- 110 (415)
+|+.++.+|.+.|++++|+++|+++.+..
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 56666666666666666666666654332
Q ss_pred --------------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 111 --------------------SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 111 --------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
+++..+|+.++.++.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|++++|.+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666777777777777777766554 3355566667777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+..+ .+..+|+.++.++.+.|++++|.++|+++.+.+
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777666542 44666777777777777777777777777776432 245677777777777777777777777777654
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc--CCCCC--H
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPD--H 326 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~--~ 326 (415)
+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+... +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3466777777777777777777777777777653 23567777777777777777777777777766211 34565 6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
.+|..++.+|.+.|++++|...|+++.+.++.+..+|..+..+|.+.|++ |...++++.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777 46666666553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=236.46 Aligned_cols=367 Identities=17% Similarity=0.127 Sum_probs=323.0
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCc
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 96 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (415)
.+..+.+.|++++|++.|+.+....| ++..+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45677899999999999999888777 45677788888999999999999999998864 55778899999999999999
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
++|++.|+++.+..|.+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999988788888999999999999999999999999999874 4455678889999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 177 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 873 446788999999999999999999999999986543 56678899999999999999999999998875 346788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 336 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 336 (415)
+..+...+...|++++|...|+++.+.+. .+..+|..+...+.+.|++++|...|+++++ ..+.+..++..+...+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcccHHHHHHHHHHH
Confidence 99999999999999999999999998642 2567899999999999999999999999998 3466889999999999
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCCCCCHHH
Q 014978 337 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNVQMDAET 395 (415)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~~p~~~t 395 (415)
...|++++|...++++.+..|.+..++..+...|.+.|++ |...++++.+ ..|+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~ 374 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFAD 374 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHH
Confidence 9999999999999999998888889999999999999999 5777887776 4565443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-30 Score=229.89 Aligned_cols=353 Identities=12% Similarity=0.052 Sum_probs=313.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
.....+..+.+.|++++|..+++.+....| ++.+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++..
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 344556677889999999999999888766 67899999999999999999999999999864 3345679999999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.|++++|.+.|+++.+..|.+...+..+...+...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988878888899999999999999999999999999874 456789999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 014978 173 KEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 252 (415)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 252 (415)
+++.+.+ +.+...|..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.
T Consensus 193 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 269 (388)
T 1w3b_A 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SS
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 9999874 456788999999999999999999999999886433 56788999999999999999999999998865 33
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
+..++..+...+.+.|++++|...|+++.+.. +++..++..+...+.+.|++++|...++++++ ..+.+..++..+
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 345 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNL 345 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHH
Confidence 67789999999999999999999999999864 34788999999999999999999999999987 345567899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 333 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 333 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
..++.+.|++++|...|+++.+..|....+|..+...+...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999988888999999988887664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=249.11 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCCHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL---------PEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34444445555444444455555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555554444444444445544444444444444544444444444444444444444444444
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
|++++|.+++++|.+.|..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 444444444444444444444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=249.63 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCC---------H
Q 014978 62 AEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQND---------K 130 (415)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------~ 130 (415)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+. ++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777766554 35888999999999999999999999887 99999999999999998765 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
.+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999988643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-26 Score=208.54 Aligned_cols=332 Identities=12% Similarity=0.031 Sum_probs=273.0
Q ss_pred hHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHH
Q 014978 28 TRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 106 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (415)
...+...|..+....| ++..+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555555555545 67889999999999999999999999998864 456788899999999999999999999999
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHH
Q 014978 107 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW---ISYSTL------------TSLYIKMELPEKAATT 171 (415)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~ 171 (415)
.+..|.+..++..++.++.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|...
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888889999999999999999999999999999874 3333 555555 4458899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 014978 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 251 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 251 (415)
|+++.+.. +.+...+..++.++...|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+.+.. +
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 242 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 242 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99998864 55788899999999999999999999999988754 367889999999999999999999999998764 3
Q ss_pred CCCchHHHH------------HHHHHhcCcHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 252 GDPRVPNIL------------LAAYINRNQLEMAESFYNRLVTKGIKPC-----YTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 252 ~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
.+...+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445444 78899999999999999999875 344 34788889999999999999999999
Q ss_pred hHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 315 AIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 315 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
++.. .+.+...+..+..+|...|++++|...++++.+..|.+..++..+..+
T Consensus 321 a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 321 VLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9872 344789999999999999999999999999999988888888888744
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=213.41 Aligned_cols=374 Identities=12% Similarity=0.038 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
..+..|..+.+.|++++|+..|+.+....|++.+|..+..++.+.|++++|++.++++.+.+ +.+..+|..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999988999999999999999999999999999999875 44567899999999999
Q ss_pred CCcCcHHHHHHHHhhcCCCC------------------------------------------------------------
Q 014978 94 GQLDKVPQMLQELKKNTSPD------------------------------------------------------------ 113 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~------------------------------------------------------------ 113 (415)
|++++|...|+++.+..+++
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999987654322
Q ss_pred -------------------HhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 014978 114 -------------------VVTYNLWLAACAS---QNDKETAEKAFLELKK-----TKI--------DPDWISYSTLTSL 158 (415)
Q Consensus 114 -------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~l~~~ 158 (415)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 3333344444443 8999999999999988 311 2235578889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
+...|++++|...++++.+.. |+...+..+...+...|++++|...++++....+. +...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999874 44888999999999999999999999999886543 667888999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 318 (415)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998875 4477889999999999999999999999998753 235678899999999999999999999999873
Q ss_pred ccCCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCCC
Q 014978 319 VRKWVPD----HRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDNV 389 (415)
Q Consensus 319 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~~ 389 (415)
... .++ ...+..+...+.. .|++++|...++++.+..+.+..++..+...|.+.|++ |...++...+.
T Consensus 402 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 478 (514)
T 2gw1_A 402 ENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-- 478 (514)
T ss_dssp HHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 211 222 3488899999999 99999999999999999988899999999999999999 56677766654
Q ss_pred CCCHHHH
Q 014978 390 QMDAETQ 396 (415)
Q Consensus 390 ~p~~~t~ 396 (415)
.|+....
T Consensus 479 ~~~~~~~ 485 (514)
T 2gw1_A 479 ARTMEEK 485 (514)
T ss_dssp CSSHHHH
T ss_pred ccccHHH
Confidence 4555443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=202.97 Aligned_cols=354 Identities=12% Similarity=0.065 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
...+..+..+.+.|++++|+..|+.+....| ++.+|..++.++...|++++|...|+++.+.+ +.+..++..+..++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3456777888999999999999999888665 67899999999999999999999999999876 446778899999999
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCH---hHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDV---VTYNLWL------------AACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (415)
+.|++++|.+.|+++.+..|.+. ..+..++ ..+...|++++|...|+++.+.. +.+..++..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999988777776 7776664 44899999999999999999874 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH-----------
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV----------- 225 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 225 (415)
.+|.+.|++++|.+.|+++.+.. +.+..+|..++..+...|++++|+..|+++.+..+. +...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 567889999999999999999999999999875432 33344444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 226 -ISSLVKLGEFEKAENIYDEWESISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 226 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
...+...|++++|...++.+.+..+. + ...+..+...+.+.|++++|...++++.+.. +.+...|..+..+|.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 78899999999999999999886422 2 3467888999999999999999999998753 236789999999999
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCC-CHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHcCCC---
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK------------LEEQG-----DIDGAEHLLVT-LRNAGHV--- 358 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~--- 358 (415)
..|++++|...++++++ ..| +...+..+..+ |...| +.+++.+.+++ ..+..|.
T Consensus 341 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQE----HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HTTCHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999987 344 45566665533 33334 55677777776 4444443
Q ss_pred C-------HHHHHHHHHHHHhcCCC
Q 014978 359 S-------TEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 359 ~-------~~~~~~l~~~~~~~g~~ 376 (415)
+ ...+..+..+|...++.
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCH
Confidence 1 12577777777777765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-24 Score=198.47 Aligned_cols=368 Identities=12% Similarity=0.045 Sum_probs=296.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..|..+.+.|++++|++.|+.+....| ++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 357778889999999999999999988876 67899999999999999999999999999875 4567788889999999
Q ss_pred cCCcCcHHHHHHHHhhcCC-------------------------------------CCHh--------------------
Q 014978 93 NGQLDKVPQMLQELKKNTS-------------------------------------PDVV-------------------- 115 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~-------------------------------------~~~~-------------------- 115 (415)
.|++++|...|+.+..... |+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999964421100 0000
Q ss_pred ----------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 014978 116 ----------TYNLWLAACA--------SQNDKETAEKAFLELKKTKIDPD-------WISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 116 ----------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1111221111 1247899999999998763 222 2356777888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 250 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 250 (415)
.++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 99999986 466888999999999999999999999999887543 67789999999999999999999999998875
Q ss_pred CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC---CCCHH
Q 014978 251 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW---VPDHR 327 (415)
Q Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~p~~~ 327 (415)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++..... .....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 4467889999999999999999999999998864 2356788999999999999999999999988742111 11223
Q ss_pred HHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhCC
Q 014978 328 LITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 328 ~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~~ 388 (415)
.+..+...+... |++++|...|+++.+..+.+..++..+...|.+.|++ |...++...+..
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345556677777 9999999999999999999999999999999999999 577777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-23 Score=181.15 Aligned_cols=318 Identities=11% Similarity=0.015 Sum_probs=213.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..|.+...+..+..++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555555556666666666666555543 2334455555555666666666666666655554555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKID---PDWISYSTL------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
..|++++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 6666666666666665542 1 122333333 466777777777777777777653 4456667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH------------
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN------------ 258 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------ 258 (415)
...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776543 255667777777777777777777777777653 22333322
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 2366688889999999999988875322 22 23445778888999999999999999872 3447788889999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 372 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (415)
.+...|++++|...|+++.+..|.+..++..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999888888888777776554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=199.01 Aligned_cols=356 Identities=11% Similarity=0.014 Sum_probs=292.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+..|.+..+|..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778899999999999999999999876 78899999999999999999999999999988888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---------------------------------------------------------
Q 014978 125 ASQNDKETAEKAFLELKKTKIDP--------------------------------------------------------- 147 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~--------------------------------------------------------- 147 (415)
.+.|++++|...|+++.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998764210
Q ss_pred ---------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCCHHHHHHH
Q 014978 148 ---------------------DWISYSTLTSLYIK---MELPEKAATTLKEMEK-----RTC--------RKNRVAYSSL 190 (415)
Q Consensus 148 ---------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 190 (415)
+...+......+.. .|++++|...++++.+ ... +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12233334444443 8999999999999987 311 2235678888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
...+...|++++|...++++.+..+. ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999986543 7788899999999999999999999998875 44778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 271 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
++|...++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998643 25678889999999999999999999999882 34466888999999999999999999999
Q ss_pred HHHHcCCCC------HHHHHHHHHHHHh---cCCC--cHHHHHHHHhCCCCCC-HHHH-HHHHHhccCC-ccccc
Q 014978 351 TLRNAGHVS------TEIYNSLLRTYAK---AGKM--PLIIVERMQKDNVQMD-AETQ-KVLKITSEMP-VSEVS 411 (415)
Q Consensus 351 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~--a~~~~~~m~~~~~~p~-~~t~-~~l~~~~~~~-~~~~~ 411 (415)
++.+..+.+ ...|..+...+.. .|++ |...++...... |+ ..++ .+-..+...+ .+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHH
Confidence 998876654 3489999999999 9988 577777776643 43 3333 4444444444 34443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-22 Score=177.35 Aligned_cols=313 Identities=13% Similarity=0.080 Sum_probs=263.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
.+..+..+...|++++|+..|+.+....| ++.++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 56778889999999999999999988766 57899999999999999999999999999875 34667888999999999
Q ss_pred CCcCcHHHHHHHHhhcCC---CCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTS---PDVVTYNLW------------LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
|++++|...|+++.+..| .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 999999999999988766 667777666 688999999999999999999874 5677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH------------HHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT------------CVI 226 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 226 (415)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+. +...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 567888999999999999999999999999886433 333332 236
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDP----RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 302 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 302 (415)
..+...|++++|...++.+.+..+. +. ..+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 6788999999999999999886422 33 234567889999999999999999998863 23678999999999999
Q ss_pred CCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLE 337 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 337 (415)
|++++|...|+++++ ..|+ ...+..+..+..
T Consensus 320 g~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQE----HNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHH
Confidence 999999999999987 3454 555665555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=174.62 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=161.9
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
.++..+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+..|.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 355666666666666677777777777666553 3344555556666666666666766666666655666666666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH
Q 014978 123 ACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201 (415)
Q Consensus 123 ~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (415)
.+...| ++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666553 3345556666666666666666666666666542 223444555666666666666
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 281 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 281 (415)
+|...++++.+..+. +...+..+...+...|++++|...++++.+.......
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 228 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------- 228 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence 666666666554322 3445555555556666666666666555443210000
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 282 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 282 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
......+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..+.+..
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 0000112234444445555555555555555554441 1223344445555555555555555555555555444444
Q ss_pred HHHHHHHHH
Q 014978 362 IYNSLLRTY 370 (415)
Q Consensus 362 ~~~~l~~~~ 370 (415)
.+..+..++
T Consensus 306 ~~~~l~~~~ 314 (330)
T 3hym_B 306 SVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-21 Score=169.27 Aligned_cols=286 Identities=8% Similarity=-0.009 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+..+...|++++|+++|+.+....| +..++..++..+...|++++|..+++++.+.. +.+...|..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 345667778888999999999999988766 56778888999999999999999999999875 4567889999999999
Q ss_pred cC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014978 93 NG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 171 (415)
Q Consensus 93 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 171 (415)
.| ++++|...|++..+..|.+...|..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|.+.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99 99999999999998888889999999999999999999999999999874 44567788899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccc--------ccChhhHHHHHHHHHhcCChHHHHHHHH
Q 014978 172 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA--------KMNDAEYTCVISSLVKLGEFEKAENIYD 243 (415)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 243 (415)
++++.+.. +.+...+..+...+...|++++|...++++.+... +....++..+...+...|++++|...++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999874 55778899999999999999999999999987531 2234567777777888888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH-HhcCC
Q 014978 244 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY-LKKGQ 304 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~ 304 (415)
++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..++ ...|+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 777664 33666777777777777777777777777766431 2455555665555 33444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-21 Score=180.64 Aligned_cols=340 Identities=13% Similarity=0.008 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----------
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---------- 81 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 81 (415)
...+..+..+.+.|++++|++.|+.+....| ++.++..+..++...|++++|...|+.+ ... |+..
T Consensus 60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GDFDGASIEPMLER 136 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CCCChHHHHHHHHH
Confidence 3456778888999999999999999988766 5788999999999999999999999643 211 1110
Q ss_pred -----------------------------------------------------------cHHHHHHHHHh--------cC
Q 014978 82 -----------------------------------------------------------PYNHMLNLYIS--------NG 94 (415)
Q Consensus 82 -----------------------------------------------------------~~~~l~~~~~~--------~~ 94 (415)
....+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11111111111 14
Q ss_pred CcCcHHHHHHHHhhcCCCCHh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVV-------TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
++++|..+|+++.+..|.+.. ++..+...+...|++++|...++++.+. .|+...+..+...+...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 788999999998887666644 4677778889999999999999999987 4668889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998874 456888999999999999999999999999987543 567888899999999999999999999988
Q ss_pred ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-----CCHhHHHHHHHHHHhc----------CCHHHHHHHH
Q 014978 248 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTWELLTWGYLKK----------GQMEKVLECF 312 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------~~~~~a~~~~ 312 (415)
.. +.+...+..+...+...|++++|...++++.+.... .....+......+... |++++|...|
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 75 446779999999999999999999999998764211 1112244555677777 9999999999
Q ss_pred HHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 313 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
+++.+. .+.+...+..+...+...|++++|...|+++.+..+.+....
T Consensus 452 ~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999882 345678899999999999999999999999999988865443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=173.21 Aligned_cols=313 Identities=14% Similarity=0.040 Sum_probs=164.3
Q ss_pred hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHH-HHHHHHhcCCC-C--CcccHHHHHHHHHhcCCcCcHH
Q 014978 25 ALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA-LMEKMSECGFL-K--CPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+.++.+...|+.+....|+ ++.-.|++++|.+ .+++....... | +...+..+...+.+.|++++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 84 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84 (368)
T ss_dssp -----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555443322 2233467777777 66655433210 1 2455667777777788888888
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
..|+++.+..|.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++|.+.++++....
T Consensus 85 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88887777667777777777788888888888888887777664 4466677777777777888888888887777653
Q ss_pred CCCHHHHHH---------------HHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 181 RKNRVAYSS---------------LLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 181 ~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
+.+...+.. .+..+...|++++|...++++.+..+.. +..++..+...+...|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222211 1222225556666666666655543221 244555555556666666666666665
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCC--
Q 014978 245 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-- 322 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 322 (415)
+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|++++......
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 55543 2244455555566666666666666666555432 1234455555556666666666666665555421111
Q ss_pred ------CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014978 323 ------VPDHRLITAAYNKLEEQGDIDGAEHLLV 350 (415)
Q Consensus 323 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 350 (415)
+....+|..+..++...|++++|..+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0014555555555666666666555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-21 Score=170.76 Aligned_cols=291 Identities=10% Similarity=-0.011 Sum_probs=236.3
Q ss_pred HHHhhhhHHHHH-HHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 22 QAQALQTRAREN-FFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 22 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
+.-.|++++|++ .|+.+....| +...+..+...+...|++++|...|+++.+.. +.+..+|..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445689999999 9987776543 35678899999999999999999999999875 4567788999999999999
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST---------------LTSLYI 160 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~~ 160 (415)
+++|...|+++.+..|.+..++..++.++...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999999988888899999999999999999999999999999874 222222221 233344
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 161 KMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
..|++++|...++++.+.. +. +..++..+...+...|++++|+..++++....+. +..++..+...+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999874 22 5788999999999999999999999999886432 567899999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC----------CHhHHHHHHHHHHhcCCHHHH
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP----------CYTTWELLTWGYLKKGQMEKV 308 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a 308 (415)
...++++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998875 4467889999999999999999999999987642211 157899999999999999999
Q ss_pred HHHHHHhHh
Q 014978 309 LECFKKAIG 317 (415)
Q Consensus 309 ~~~~~~~~~ 317 (415)
..++++.++
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 998876554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=169.27 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=167.7
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+...+..+...+.+.|++++|+..|+++.+..|.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344466666666666666666666666665556666666666666666666666666666666553 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKN-----------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVI 226 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 226 (415)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..+.. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 666666666666666666542 11 1222334666777777777777777777653321 455677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+... .+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 77777777777777777776654 33566777777777777777777777777776431 24667777777777777777
Q ss_pred HHHHHHHHhHhcccCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWV---------PDHRLITAAYNKLEEQGDIDGAEHLLVT 351 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 351 (415)
+|...|+++++...... .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777766321111 0246677777777777877777776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-18 Score=155.11 Aligned_cols=348 Identities=14% Similarity=0.071 Sum_probs=291.2
Q ss_pred HHHHHHHHHH----hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 15 SYRQRVAQAQ----ALQTRARENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 15 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
.+..+..+.. .+++++|++.|+.+.+. .++.++..|...|.. .+++++|.+.|++..+.| ++..+..+
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 117 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNL 117 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4555666666 78999999999998775 467888899999998 999999999999998875 55677778
Q ss_pred HHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 87 LNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 87 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++..+.| +...+..+...
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 888888 78999999999998764 567888889998887 889999999999999875 67788889999
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...+.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 988 899999999999998865 56677788888876 789999999999998764 4456667777777
Q ss_pred h----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-----CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 231 K----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 231 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
. .++.++|...|++..+.+ +...+..+...|... ++.++|..+|++..+.+ +...+..+...|..
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 7 899999999999988764 556777888888887 89999999999999875 55677888888887
Q ss_pred cC---CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--
Q 014978 302 KG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-- 372 (415)
Q Consensus 302 ~~---~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 372 (415)
.| ++++|+++|+++.+ . .+...+..+...|.. .+++++|...|++..+.+ ++..+..|...|.+
T Consensus 341 ~g~~~~~~~A~~~~~~a~~--~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAA--K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred CCCcccHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 66 78999999999988 2 467888899999988 899999999999999875 57788899999988
Q ss_pred --cCCC--cHHHHHHHHhCCCC
Q 014978 373 --AGKM--PLIIVERMQKDNVQ 390 (415)
Q Consensus 373 --~g~~--a~~~~~~m~~~~~~ 390 (415)
.+++ |...++.-.+.+..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCC
Confidence 6777 57777777776644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=165.62 Aligned_cols=260 Identities=15% Similarity=0.037 Sum_probs=214.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
..+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3456679999999999999999999999999874 5678899999999999999999999999999874 4568889999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcccccChhh----------HHHHHHHHHhcCChHHHHHHHHHHHhccCCC-CCchHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE----------YTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNI 259 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 259 (415)
..++...|++++|+..++++.+..+. +... +..+...+...|++++|...++++.+..+.. +..++..
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999886432 1222 3345788899999999999999998875321 5778999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc
Q 014978 260 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 339 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 339 (415)
+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++++. .+.+..++..+..+|...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHC
Confidence 9999999999999999999998864 236789999999999999999999999999882 344588899999999999
Q ss_pred CChhHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHhcCCCc
Q 014978 340 GDIDGAEHLLVTLRNAGHV------------STEIYNSLLRTYAKAGKMP 377 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~a 377 (415)
|++++|...|+++.+..+. ...+|..+..++...|+.+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999886544 2578999999999999873
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=160.51 Aligned_cols=233 Identities=13% Similarity=0.040 Sum_probs=121.4
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+..|.+..++..+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556666777777777777777777776653 33555666666777777777777777777666666666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTL--------------TS-LYIKMELPEKAATTLKEMEKRTCRKNRVAYS 188 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (415)
+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 777777777777777776653 1122222222 11 2334444445555444444432 22344444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
.+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 444444444444444444444444321 123334444444444444444444444444332 123333444444444444
Q ss_pred cHHHHHHHHHHHH
Q 014978 269 QLEMAESFYNRLV 281 (415)
Q Consensus 269 ~~~~a~~~~~~~~ 281 (415)
++++|.+.++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=161.86 Aligned_cols=263 Identities=10% Similarity=0.009 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
..+..+..+...|++++|+..|+.+....| +..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 357788899999999999999999888766 67788999999999999999999999999875 4467788889999999
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLW--------------LA-ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
.|++++|.+.++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 9999999999999988766666666655 44 4788899999999999999875 457789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH
Q 014978 158 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 237 (415)
.+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998874 45678899999999999999999999999988643 356788899999999999999
Q ss_pred HHHHHHHHHhccCCC-----------CCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 238 AENIYDEWESISGTG-----------DPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 238 a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
|...++++.+..+.. +...+..+..++...|+.++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999988765332 3556777777888888888887776643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=153.56 Aligned_cols=331 Identities=13% Similarity=0.034 Sum_probs=277.0
Q ss_pred HHHHHHHHHH----hhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcccHHHH
Q 014978 15 SYRQRVAQAQ----ALQTRARENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHM 86 (415)
Q Consensus 15 ~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (415)
.+..+..+.. .+++++|++.|+.+.+. .++.++..|...|.. .+++++|.+.|++..+.| ++..+..+
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 153 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4556677777 89999999999998775 377888889999988 899999999999998876 45677888
Q ss_pred HHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 87 LNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 87 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
...|.. .+++++|++.|++..+. .+..++..+...|.. .+++++|..+|++..+.| +...+..+...
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 228 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADM 228 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 888887 78999999999998764 578889999999988 899999999999999875 56778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|+.+|++..+.+ +...+..+...+.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 886 899999999999998864 55667777788877 899999999999998764 4456777788887
Q ss_pred hc-----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC---cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-
Q 014978 231 KL-----GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN---QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK- 301 (415)
Q Consensus 231 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 301 (415)
.. ++.++|...+++..+.+ +...+..+...|...| +.++|.++|++..+.| +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 77 89999999999998865 4567788888888766 8899999999999864 67888899999988
Q ss_pred ---cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Q 014978 302 ---KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYA 371 (415)
Q Consensus 302 ---~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 371 (415)
.+++++|..+|+++.+ . .+...+..|...|.. .+++++|...|++..+.++. ++.....+...+.
T Consensus 377 ~g~~~~~~~A~~~~~~A~~--~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAE--Q---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCCHHHHHHHHHHHHh--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 8999999999999988 3 357788889999988 89999999999999998854 4455555544433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-17 Score=154.06 Aligned_cols=359 Identities=11% Similarity=0.023 Sum_probs=215.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCcCc
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YISNGQLDK 98 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 98 (415)
.+.+.|++++|..+|+.+....| +...|...+..+.+.|++++|..+|+++.... |+...|...+.. ....|+.+.
T Consensus 21 ~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 21 REAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 35678999999999999998877 66789999999999999999999999999864 677777777753 345788888
Q ss_pred HHH----HHHHHhhc---CCCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 014978 99 VPQ----MLQELKKN---TSPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLY--- 159 (415)
Q Consensus 99 a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--- 159 (415)
|.+ +|+..... .+++...|...+....+ .|+++.|..+|++.++....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 776 67666543 34567788888887665 788999999999998742111123333222211
Q ss_pred ----------HhcCCHHHHHHHHHHHH------hcC---CCCC--------HHHHHHHHHHHHcC----CCh----HHHH
Q 014978 160 ----------IKMELPEKAATTLKEME------KRT---CRKN--------RVAYSSLLSLYTNM----GYK----DEVL 204 (415)
Q Consensus 160 ----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~ 204 (415)
.+.+++..|..++.+.. +.. ++|+ ...|...+...... ++. ..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 12334555555554421 111 1232 13344443322211 122 2555
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVK-------LGEFE-------KAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
.+|+++....+ .+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++
T Consensus 259 ~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 66666665432 244455555555543 46655 6666666665421123455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH-HHHcCChhHHHH
Q 014978 271 EMAESFYNRLVTKGIKPC-Y-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK-LEEQGDIDGAEH 347 (415)
Q Consensus 271 ~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~ 347 (415)
++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|+++++. .+.+...+...+.. +...|++++|..
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 6666666666653 232 2 35666666666666666666666666551 11122222222211 224566666666
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHhC
Q 014978 348 LLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~~ 387 (415)
+|++..+..|.++..|..++..+.+.|+. +..+|++....
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 66666666555666666666666666665 45566655554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=162.63 Aligned_cols=309 Identities=15% Similarity=0.104 Sum_probs=146.4
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
.+.|++++|.++++.+. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~~----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 46788999999999883 3459999999999999999999999652 5777999999999999999999998
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 8877764 4557889999999999999999998885 367789999999999999999999999976
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 36899999999999999999999998 2678999999999999999999655443 2234444557889
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYN 334 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~ 334 (415)
.|.+.|++++|..+++..+... +-....|+-+...|++- ++..+.++.|..- ..++| +...|..+..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~----ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR----VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 34667888887777654 3444455544432 22333 3456888888
Q ss_pred HHHHcCChhHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHhcC
Q 014978 335 KLEEQGDIDGAEHLLVTLRNA------------GHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g 374 (415)
.|...++++.|....-+-... .+.+.+.|-..+..|....
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~ 342 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 342 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC
Confidence 899999999887643322212 3445667767777776444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=152.73 Aligned_cols=354 Identities=11% Similarity=0.010 Sum_probs=252.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcC---------CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C-CCC-C
Q 014978 17 RQRVAQAQALQTRARENFFENLPDK---------MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-----G-FLK-C 79 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~ 79 (415)
..|..+...|++++|++.|+++.+. .| ...+|+.+..+|...|++++|...+++..+. + ..+ .
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 4677888999999999999886542 23 3467899999999999999999999987642 1 011 2
Q ss_pred cccHHHHHHHHHh--cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014978 80 PLPYNHMLNLYIS--NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC---ASQNDKETAEKAFLELKKTKIDPDWISYST 154 (415)
Q Consensus 80 ~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 154 (415)
..++.....++.. .+++++|++.|++..+..|.+...+..+..++ ...++.++|++.+++..+.. +.+..++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 3455555555554 45689999999999887788888887777664 44577889999999988874 445666666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 155 LTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 155 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+..+. +..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 6655554 467889999999988774 557788999999999999999999999999886443 4556666665553
Q ss_pred hc-------------------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-
Q 014978 231 KL-------------------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT- 290 (415)
Q Consensus 231 ~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~- 290 (415)
.. +..+.|...++...+.. +.+..++..+...|...|++++|...|++.++....|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 22 23567888888877765 4477888999999999999999999999998865433221
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 291 -TWELLTW-GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 291 -~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
.+..+.. .....|++++|+..|.++++ +.|+...... ....+.++++...+.+|.+..+|..|..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2233332 34578999999999999987 5565443322 2345566777888888888889999999
Q ss_pred HHHhcCCC--cHHHHHHHHhC
Q 014978 369 TYAKAGKM--PLIIVERMQKD 387 (415)
Q Consensus 369 ~~~~~g~~--a~~~~~~m~~~ 387 (415)
.|...|++ |...+++-.+.
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHCC------------
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 99999988 57777766554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=148.07 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=98.0
Q ss_pred HhhhhHHHHHHHHhcCcCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 24 QALQTRARENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
..|++..|+..++.+....|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3445555555554444333321 2333344445555555554443322 1 12333344444444444444444444
Q ss_pred HHHHHhhc--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 102 MLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
.++++... .|.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444332 233333444444444444444444444443 2233444444444444444444444444444431
Q ss_pred CCCCHHHH---HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCch
Q 014978 180 CRKNRVAY---SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 256 (415)
Q Consensus 180 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 256 (415)
|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.. +.+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 221100 111122223344444444444444432 1233334444444444444444444444444332 223334
Q ss_pred HHHHHHHHHhcCcHHH-HHHHHHHHH
Q 014978 257 PNILLAAYINRNQLEM-AESFYNRLV 281 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~-a~~~~~~~~ 281 (415)
+..++..+...|+.++ +.++++++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444444444444332 233444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=161.93 Aligned_cols=289 Identities=13% Similarity=0.129 Sum_probs=138.7
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 136 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (415)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5688999999999883 235899999999999999999999965 35777999999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 137 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877764 4567889999999999999999998884 377789999999999999999999999976
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 014978 217 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 296 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 296 (415)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 37999999999999999999999987 278899999999999999999966555422 2444455788
Q ss_pred HHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCC-------CHHHHHHHHH
Q 014978 297 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHV-------STEIYNSLLR 368 (415)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-------~~~~~~~l~~ 368 (415)
..|.+.|.+++|+.+++..+.. . +-....|+.|..+|++- +++...+.++...+ .+++ ....|.-++.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~l--e-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTS--T-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999872 2 44567788887777764 34444444443322 1111 2456999999
Q ss_pred HHHhcCCCcHHHHHHHHhCCC
Q 014978 369 TYAKAGKMPLIIVERMQKDNV 389 (415)
Q Consensus 369 ~~~~~g~~a~~~~~~m~~~~~ 389 (415)
.|.+.++++.++...|.....
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHhhchHHHHHHHHHhCChh
Confidence 999999998888777776544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-18 Score=142.98 Aligned_cols=248 Identities=12% Similarity=0.057 Sum_probs=109.0
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 55 YVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
....|+++.|+..+++.... .|+. .....+.++|...|+++.|+..++. ..+|+..++..++..+...++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 33455555555555443332 1221 2233344555555555555543322 134444455555555555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
|.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443222 333444444555555555555555544 2344445555555555555555555555554
Q ss_pred HcccccChhhH---HHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 014978 212 SLFAKMNDAEY---TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 288 (415)
Q Consensus 212 ~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 288 (415)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++.++... -+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 432 221110 011122222344444444444444432 22344444444444444444444444444443321 13
Q ss_pred HhHHHHHHHHHHhcCCHHH-HHHHHHHhHh
Q 014978 289 YTTWELLTWGYLKKGQMEK-VLECFKKAIG 317 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 317 (415)
..++..++..+...|+.++ +.++++++++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444432 2344444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-16 Score=147.78 Aligned_cols=368 Identities=10% Similarity=0.038 Sum_probs=256.8
Q ss_pred HhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH
Q 014978 36 ENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 114 (415)
Q Consensus 36 ~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (415)
+......| +..+|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++..+..| +.
T Consensus 3 e~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 33334445 6789999998 478999999999999999864 55677899999999999999999999999988764 88
Q ss_pred hHHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhc
Q 014978 115 VTYNLWLAAC-ASQNDKETAEK----AFLELKKT-KIDP-DWISYSTLTSLYIK---------MELPEKAATTLKEMEKR 178 (415)
Q Consensus 115 ~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 178 (415)
..|..++... ...|+++.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 8888887644 45677777665 77776543 5443 45677777776655 68899999999999873
Q ss_pred CCCCCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHHH------cc---cccC--------hhhHHHHHHH
Q 014978 179 TCRKNRVAYSSLLSLY-------------TNMGYKDEVLRIWKKMMS------LF---AKMN--------DAEYTCVISS 228 (415)
Q Consensus 179 ~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~ 228 (415)
...+....|....... ...+++..|..++..... .. ++|+ ...|...+..
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 1111123443332211 123556777777765321 11 2333 1345555533
Q ss_pred HHhc----CCh----HHHHHHHHHHHhccCCCCCchHHHHHHHHHh-------cCcHH-------HHHHHHHHHHhCCCC
Q 014978 229 LVKL----GEF----EKAENIYDEWESISGTGDPRVPNILLAAYIN-------RNQLE-------MAESFYNRLVTKGIK 286 (415)
Q Consensus 229 ~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~ 286 (415)
.... ++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+. +.
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~ 317 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LL 317 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TC
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hC
Confidence 3222 233 47788999988875 4478888888888876 68887 999999999863 23
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-H-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 287 P-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-H-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 287 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
| +...|..++..+.+.|++++|..+|+++++ ..|+ . ..|..++..+.+.|++++|..+|++..+..+.....|
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 4 577899999999999999999999999988 3554 3 5888899999999999999999999999876655555
Q ss_pred HHHHHH-HHhcCCC--cHHHHHHHHhCCCCCC-HHHH-HHHHHhccCC-cccccccc
Q 014978 364 NSLLRT-YAKAGKM--PLIIVERMQKDNVQMD-AETQ-KVLKITSEMP-VSEVSSIF 414 (415)
Q Consensus 364 ~~l~~~-~~~~g~~--a~~~~~~m~~~~~~p~-~~t~-~~l~~~~~~~-~~~~~~~~ 414 (415)
...... +...|+. |..+|+...+. .|+ ...+ .+.......+ .+++..+|
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 443333 3457877 57778766654 254 3333 4444444444 44554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-17 Score=136.34 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----HHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR--KN----RVAY 187 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 187 (415)
...+..+...+...|++++|..+|+++.+.. .+..++..+..++...|++++|.+.++++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666677777777777777777776665 56666777777777777777777777766653211 11 4566
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 267 (415)
Q Consensus 188 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (415)
..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 667777777777777777777776643 332 23455566777777777766543 22455666677777777
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 347 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 347 (415)
|++++|...++++.+... .+...+..+...+...|++++|+..++++++. .+.+...+..+..++...|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777766432 24566777777777777777777777777662 23446667777777777777777777
Q ss_pred HHHHHHHcC
Q 014978 348 LLVTLRNAG 356 (415)
Q Consensus 348 ~~~~~~~~~ 356 (415)
.++++.+..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 777776665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=166.47 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=108.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988763 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 188 SSLLSLYTNMGYK-DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 188 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999885 78899999999999999999999888655543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-17 Score=134.52 Aligned_cols=222 Identities=13% Similarity=0.020 Sum_probs=113.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---C----HhHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---D----VVTYN 118 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~ 118 (415)
..|..+...+...|++++|.+.|++..+.. .+...|..+..++...|++++|++.+++..+..+. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 55556666666666666666666666665443111 1 35555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.+..++...|++++|...|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 5666666666666666666665554 2332 22334445555555555555431 223334444555555555
Q ss_pred ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555443221 33344444444444555555555554444432 2233344444444444444444444444
Q ss_pred HHH
Q 014978 279 RLV 281 (415)
Q Consensus 279 ~~~ 281 (415)
+..
T Consensus 232 ~a~ 234 (258)
T 3uq3_A 232 AAR 234 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=132.45 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
+..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..|.+...+..+..++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3344444444444444444444444444432 223333444444444444444444444444443344444444444444
Q ss_pred Hhc
Q 014978 125 ASQ 127 (415)
Q Consensus 125 ~~~ 127 (415)
...
T Consensus 84 ~~~ 86 (217)
T 2pl2_A 84 VAL 86 (217)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=134.12 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCccc----HHHHHHHH
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNHMLNLY 90 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~ 90 (415)
+..+..+...|++++|+..|+.+.+..| ++.++..+...+...|++++|++.+++..+.+ ++... |..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHH
Confidence 4556666677777777777777666655 44567777777777777777777777776632 33332 56666667
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
...|++++|++.|++..+..|.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666656666677777777777777777777777666552 3344555555523333446777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcc-cccC------hhhHHHHHHHHHhcCChHHHHH
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIWKKMMSLF-AKMN------DAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...+...|++++|..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 776666652 3335555555666655555 566666666665542 1112 1245555555666666666666
Q ss_pred HHHHHHhc
Q 014978 241 IYDEWESI 248 (415)
Q Consensus 241 ~~~~~~~~ 248 (415)
.++++.+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-17 Score=131.48 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=93.8
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
++...+..+...+.+.|++++|+..|++..+..|.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4445555555556666666666666666555555556666666666666666666666666655543 334445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 158 LYIKM-----------ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 158 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
++.+. |++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 55555555555544432 2234444444444555555555555555544443 2344444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
.++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444455555555544444432 22333444444444444444444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-14 Score=132.72 Aligned_cols=309 Identities=13% Similarity=0.015 Sum_probs=227.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhc-----C---CCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc------
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSEC-----G---FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN------ 109 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 109 (415)
....|+.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4678999999999999999999999987542 1 1223457888999999999999999999986542
Q ss_pred --CCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 014978 110 --TSPDVVTYNLWLAACASQ--NDKETAEKAFLELKKTKIDPDWISYSTLTSLY---IKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 110 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
.+....++..+..++... +++++|+..|++..+.. +.+...+..+..++ ...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 123355677666666554 57999999999999874 34455665555553 45678889999999988764 44
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 183 NRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 183 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
+...+..+...+.. .+++++|.+.+++.....+. +..++..+...+...|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 56666666555543 46788999999998886543 66678889999999999999999999998875 33566677
Q ss_pred HHHHHHHhc-------------------CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 014978 259 ILLAAYINR-------------------NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 259 ~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
.+..+|... +..+.|...++...+... .+...+..+...+...|++++|+..|+++++
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-- 362 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS-- 362 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh--
Confidence 676665432 346678888888877532 3566888899999999999999999999987
Q ss_pred cCCCCCHH----HHHHHHH-HHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 320 RKWVPDHR----LITAAYN-KLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 320 ~~~~p~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
..|+.. .+..+.. .....|++++|+..|++..+..+.+..
T Consensus 363 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 363 --KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred --cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 234332 2233332 245679999999999999998887543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-16 Score=131.59 Aligned_cols=253 Identities=11% Similarity=0.037 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSL 193 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 193 (415)
.+......+...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.++++.+.+..|+ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44455566666666666666666666553 23344566666666666666666666666665321111 2235666666
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 273 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 273 (415)
+...|++++|+..+++..+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776665332 44566667777777777777777777666553 33455555555233344577777
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCC------HHHHHHHHHHHHHcCChhH
Q 014978 274 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPD------HRLITAAYNKLEEQGDIDG 344 (415)
Q Consensus 274 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~ 344 (415)
.+.|+++.+... .+...+..+...+...|+ +++|...++++.+.. .-.|+ ...+..+...|...|++++
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777776431 235566667777777777 777777777777631 11222 2567777888888888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 345 AEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
|...|+++.+..|.+..++..+.......
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 88888888888888877777666555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=163.64 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEME---KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 222 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (415)
..-..||++||++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345699999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 014978 223 TCVISSLVKLGEF-EKAENIYDEWESISGTGDPRVPNILLAAYINRN 268 (415)
Q Consensus 223 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 268 (415)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999999985 789999999999999999999999987665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-15 Score=146.05 Aligned_cols=320 Identities=13% Similarity=0.115 Sum_probs=238.3
Q ss_pred HHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcC
Q 014978 18 QRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 97 (415)
Q Consensus 18 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (415)
.|..+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. .++.+|..+..++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 35566788889999999988742 2222233332 678888888888855 24568889999999999999
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
+|++.|.+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999999664 577888889999999999999999998877764 34333445888899998888544332 2
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchH
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP 257 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 257 (415)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 356667778899999999999999999885 36888999999999999999998875 356788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHH
Q 014978 258 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 337 (415)
Q Consensus 258 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 337 (415)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.. . +-....|+-+..++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--e-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--C-hhHhHHHHHHHHHHH
Confidence 88888999999998888876543 235667789999999999999999999888762 1 333456666666666
Q ss_pred Hc--CChhHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCCcHHHHHHHHh
Q 014978 338 EQ--GDIDGAEHLLVTLRNAGH-----VSTEIYNSLLRTYAKAGKMPLIIVERMQK 386 (415)
Q Consensus 338 ~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~a~~~~~~m~~ 386 (415)
+. ++..++.+.|..-....+ .....|..++..|.+.|+++.++...|..
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 54 444555555554333222 23577999999999999997666555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-16 Score=135.08 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=186.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL-PEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|+++.+.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888887764 4456677788888888886 888888888887764 44677788888
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-cCcH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQL 270 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 270 (415)
.++...|++++|+..|+++++..+. +...|..+..++...|++++|...++++.+.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888888876543 56677778888888888888888888888765 3367778888888877 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC---
Q 014978 271 EMA-----ESFYNRLVTKGIKPCYTTWELLTWGYLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG--- 340 (415)
Q Consensus 271 ~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 340 (415)
++| ...+++.+.... -+...|..+...+...| ++++|++.+.++ + ..+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhccc
Confidence 666 477777776432 15567777777777777 578888888776 4 23455677778888887764
Q ss_pred ------ChhHHHHHHHHH-HHcCCCCHHHHHHHHHHHHhc
Q 014978 341 ------DIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 341 ------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 373 (415)
.+++|..+|+++ .+.+|.....|..+...+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258888888888 777777778888777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-15 Score=123.52 Aligned_cols=229 Identities=15% Similarity=0.028 Sum_probs=173.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
+.+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3456677777777888888888888888877732 45667777777777 888888888888877764 5667
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCCCchHH
Q 014978 187 YSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPN 258 (415)
Q Consensus 187 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (415)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 788888888888877754 55667777777777 788888888888877754 455667
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHH
Q 014978 259 ILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLIT 330 (415)
Q Consensus 259 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 330 (415)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|+++.+ . . +...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~--~-~~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--L--E-NGGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--T--T-CHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--C--C-CHHHHH
Confidence 77777777 788888888888887764 45677778888888 8888888888888877 2 2 366777
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHcCCCC
Q 014978 331 AAYNKLEE----QGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 331 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 359 (415)
.+...|.. .+++++|...|++..+.++.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77788887 888888888888888877653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-17 Score=135.69 Aligned_cols=218 Identities=12% Similarity=0.028 Sum_probs=116.3
Q ss_pred hhhhHHHHHHHHhcCcCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 25 ALQTRARENFFENLPDKMR-----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.|++++|++.|+.+....+ ++.+|..+...+...|++++|...|+++.+.+ +.+..+|..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666555421 34455566666666666666666666666543 23455555566666666666666
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
...|+++.+..|.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66666665555555566666666666666666666666666554 2333333333334445566666666665555442
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+++...+. ++..+...++.++|...+++........ +..++..+...+...|++++|...++++.+
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22333332 4444555555555555555554432210 123444455555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-16 Score=134.55 Aligned_cols=247 Identities=13% Similarity=0.152 Sum_probs=173.9
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-cCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
..+|..+...+...|++++|++.+++.++.. +.+..+|+.+..++...|+ +++|+..|+++.+..|.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777777788888888888888887764 3356677777778888886 8888888888877777788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-CCChHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-MGYKDE 202 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 202 (415)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888888764 4566778888888888888888888888887764 4466777777777777 555466
Q ss_pred H-----HHHHHHHHHcccccChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-------
Q 014978 203 V-----LRIWKKMMSLFAKMNDAEYTCVISSLVKLG--EFEKAENIYDEWESISGTGDPRVPNILLAAYINRN------- 268 (415)
Q Consensus 203 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 268 (415)
| ++.+++.+...+. +...|..+...+...| ++++|...+.++ +.. +.+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4777777765433 4556777777777766 577777777776 322 334556667777777653
Q ss_pred --cHHHHHHHHHHH-HhCCCCCC-HhHHHHHHHHH
Q 014978 269 --QLEMAESFYNRL-VTKGIKPC-YTTWELLTWGY 299 (415)
Q Consensus 269 --~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 299 (415)
..++|.++++++ .+. .|. ...|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247777777777 553 343 33454444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=133.61 Aligned_cols=184 Identities=10% Similarity=-0.099 Sum_probs=94.9
Q ss_pred hcCcHHHHHHHHHHHHhcCC---CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 57 QNKKSAEAEALMEKMSECGF---LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 133 (415)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (415)
..|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+..|.+..+|..++.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 44666677777776665421 112345555566666666666666666666555555566666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 134 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
...|+++.+.. +.+..++..+..+|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666665542 234455555555666666666666666555553 222222222223333345555555555444443
Q ss_pred ccccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 014978 214 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
.. ++...+ .++..+...++.++|...+...
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 21 122222 2333344444444444444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=127.15 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHH
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 229 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (415)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.... +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344455555555566666666665555532 334555555555666666666666666665554322 444555556666
Q ss_pred HhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 014978 230 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 230 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665543 2345556666666666777777777776666542 124566667777777777777777
Q ss_pred HHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 310 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
..++++... .+.+..++..+..++...|++++|...++++.+..+.+..++..+..
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 777777662 23456677777777777788888888888777777776666555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-15 Score=123.53 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=91.7
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 161 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (415)
.|..+...+...|++++|.+.|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344444444555555555555555444444444555555555555555555555555554442 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHH
Q 014978 162 MELPEKAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 240 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 240 (415)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544411122 2333444444455555555555555554443221 23344444444444455555554
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
.++.+.+.. +.+...+..+...+...|+.++|.+.++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444332 22333344444444444444444444444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-15 Score=122.33 Aligned_cols=204 Identities=13% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHh
Q 014978 152 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 231 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (415)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3444444444444444444444444331 223344444444444444444444444444443221 33344444444555
Q ss_pred cCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 232 LGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 310 (415)
.|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544411111 233444455555555555555555555554321 134555556666666666666666
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
.++++.+ ..+.+...+..+...+...|++++|.+.++++.+..+.+..
T Consensus 197 ~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 197 YYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 6666554 22334555555556666666666666666666665555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-15 Score=120.26 Aligned_cols=202 Identities=14% Similarity=0.037 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+.+..++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34455566666666666666666666665543 23344555555556666666666666666555445555556666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH
Q 014978 124 CASQ-NDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 201 (415)
Q Consensus 124 ~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (415)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666655521122 23445555555555566666655555555442 223445555555555555555
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+|...++++.+..+..+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555443212333444444444555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=128.73 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
|..+...+...|++++|...|+++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33333444444444444444444443333444444444444444444444444444444332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 22334444444444444444444444444444321 13334444444444555555555555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+.+.+.. +.+..++..+..+|...|++++|...++++.+
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5444432 22334444455555555555555555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-14 Score=118.47 Aligned_cols=206 Identities=13% Similarity=0.076 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 44444444444555555555554444432 223444444445555555555555555554443221 3334444555555
Q ss_pred hc-CChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 231 KL-GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 308 (415)
Q Consensus 231 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 308 (415)
.. |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 55 55555555555554411111 133445555555555666666665555554321 1345555666666666666666
Q ss_pred HHHHHHhHhcccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHH
Q 014978 309 LECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 309 ~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (415)
...++++.+. .+ .+...+..+...+...|+.+.|..+++.+.+..|.+...
T Consensus 167 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 167 DYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 6666666551 12 345555555555666666666666666666555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-15 Score=133.95 Aligned_cols=347 Identities=12% Similarity=0.062 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcH---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKS---AEAEALMEKMSECGFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (415)
...+..+.+.|++++|+++|+.+.+. .++.++..|...|...|++ ++|.+.|++..+. ++..+..+...+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45677888999999999999998764 3667777777788888888 8999999988754 55667777775555
Q ss_pred cC-----CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 93 NG-----QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE---TAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 93 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+ ++++|+..|++..+... ...+..|...|...+..+ .+.+.+......| +......+...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 55 67789999998876433 337777777777665543 4455555555554 34566677777887775
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc----CChHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG---YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----GEFEK 237 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 237 (415)
++++......+.+.-...+...+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5554444333322211223337777888888888 888888888888887643 444445566666544 68888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHH-H--HhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----CHHHHH
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAA-Y--INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-----QMEKVL 309 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~ 309 (415)
|...|+... . .+...+..+... + ...+++++|.++|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888888876 3 356667777766 3 45788889999998888765 5667777777776 44 888888
Q ss_pred HHHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCC--cHH
Q 014978 310 ECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA----GKM--PLI 379 (415)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~--a~~ 379 (415)
.+|+++. +-+......|...|.. ..++++|...|++..+.|.. .....|...|..- .+. +..
T Consensus 308 ~~~~~Aa------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 308 AHFEKAV------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN--SADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHTTT------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT--THHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHh------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH--HHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 8888764 3456677777766665 33888899988888876654 3455566666532 122 344
Q ss_pred HHHHHHhCCC
Q 014978 380 IVERMQKDNV 389 (415)
Q Consensus 380 ~~~~m~~~~~ 389 (415)
.+..-.+.|.
T Consensus 380 ~~~~A~~~g~ 389 (452)
T 3e4b_A 380 FSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 5555444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-14 Score=120.58 Aligned_cols=218 Identities=12% Similarity=0.006 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..+...+...|++++|+..|++..+ +.+..++..+...+.. .+++++|...|++..+.+ +...+..+...
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 33333444444444444444444333 2233344444444444 444444444444444443 33444444444
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 159 YIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 159 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 444 455555555554444432 33444444444444 455555555555544432 2233444444444
Q ss_pred h----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-
Q 014978 231 K----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK- 301 (415)
Q Consensus 231 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 301 (415)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 4 455555555555544432 23344445555555 555555555555555542 23444455555555
Q ss_pred ---cCCHHHHHHHHHHhHh
Q 014978 302 ---KGQMEKVLECFKKAIG 317 (415)
Q Consensus 302 ---~~~~~~a~~~~~~~~~ 317 (415)
.+++++|.+.|+++.+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 5555566665555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-14 Score=136.25 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=240.6
Q ss_pred HHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHH
Q 014978 23 AQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 102 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (415)
...|++++|.++.++. -++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++
T Consensus 1087 e~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1087 EHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3778888998888865 35789999999999999999999999663 4677888999999999999999999
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 014978 103 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 182 (415)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 182 (415)
|...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1157 L~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1157 LQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 99877653 33333445999999999988644443 2 456677778999999999999999999985
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH
Q 014978 183 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 262 (415)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (415)
..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence 37899999999999999999999987 25678999999999999999998876542 345667778999
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHH
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYN 334 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~ 334 (415)
.|.+.|.+++|..+++..+... +-....|.-+...|++- ++..++.++|..-.. ++| +...|..++.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin----i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN----IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc----cchHhHHHHHHHHHHHHHH
Confidence 9999999999999998887654 23455776676666653 455566666664332 333 4567899999
Q ss_pred HHHHcCChhHHHHHHHHHHH------------cCCCCHHHHHHHHHHHHhcC
Q 014978 335 KLEEQGDIDGAEHLLVTLRN------------AGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g 374 (415)
.|.+.|+++.|....-+-.. ..+.+++.|...+..|...+
T Consensus 1364 LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 99999999999833222111 13446788888888887666
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=136.40 Aligned_cols=176 Identities=18% Similarity=0.151 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHccc----cc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCc
Q 014978 200 KDEVLRIWKKMMSLFA----KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQ 269 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 269 (415)
+++|...+++...... .| ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 5555555555443210 11 1224566666667777777777777766543211 11 1256667777777788
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcC
Q 014978 270 LEMAESFYNRLVTK----GIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQG 340 (415)
Q Consensus 270 ~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 340 (415)
+++|...+++..+. +..+ ...++..+...|...|++++|...++++....... ++ ..++..+...|...|
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcC
Confidence 88877777776532 1101 13466777888888888888888888877632111 12 456777888888889
Q ss_pred ChhHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHhcCCC
Q 014978 341 DIDGAEHLLVTLRNAG----HV--STEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~ 376 (415)
++++|...+++..+.. .. ...++..+...+...|+.
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999998888876532 11 235677888888887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-14 Score=127.97 Aligned_cols=319 Identities=14% Similarity=0.086 Sum_probs=216.8
Q ss_pred HHHHHHhhhh---HHHHHHHHhcCcCCCCcchHHHHHHHHHhcC-----cHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014978 19 RVAQAQALQT---RARENFFENLPDKMRGPDTCSALLHSYVQNK-----KSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90 (415)
Q Consensus 19 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (415)
+..+...|+. ++|++.|+.+.+. ++.++..+...+...+ ++++|...|++..+.| +...+..+...|
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 116 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLY 116 (452)
T ss_dssp C------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3344556777 9999999999875 7788888888666655 8899999999999876 334777888888
Q ss_pred HhcCCcCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 014978 91 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPE 166 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~ 166 (415)
...+..+++.+.++.+.+. .+.+...+..+...|...+.++.+......+.+.-...++..+..|...|.+.| +.+
T Consensus 117 ~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 117 LQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 8776655444444443332 234567788888889888866555544333322212223448888999999999 999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHcccccChhhHHHHHHH-H--HhcCChHHHH
Q 014978 167 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNM----GYKDEVLRIWKKMMSLFAKMNDAEYTCVISS-L--VKLGEFEKAE 239 (415)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~ 239 (415)
+|++.|++..+.| +++...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|.
T Consensus 197 ~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 9999999999987 55666667788887665 79999999999987 32 45566666666 3 4689999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcC-----cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHH
Q 014978 240 NIYDEWESISGTGDPRVPNILLAAYINRN-----QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLE 310 (415)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 310 (415)
..|++..+.| +...+..|...|. .| ++++|.++|++.. .| +...+..+...|.. ..++++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999998765 6677888888887 55 9999999999888 43 66777778777776 349999999
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
+|+++.+ .+. ......|...|.. ..+.++|..+|+...+.|....
T Consensus 344 ~~~~Aa~--~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 344 HLLTAAR--NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp HHHHHHT--TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHh--hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999988 342 3445556666653 4589999999999999886543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=136.88 Aligned_cols=296 Identities=12% Similarity=0.010 Sum_probs=174.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcCcHHHHHHHHhhc---C---CCCHhH
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHMLNLYISNGQLDKVPQMLQELKKN---T---SPDVVT 116 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~ 116 (415)
.+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... . +....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444555555566666666665555542 111 134445555555566666666655554322 1 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKI-DPD----WISYSTLTSLYIKMEL--------------------PEKAATT 171 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 171 (415)
+..+..++...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55666666666666666666666543310 011 2356666666777777 7777777
Q ss_pred HHHHHhc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC----hhhHHHHHHHHHhcCChHHHHHH
Q 014978 172 LKEMEKR----TCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 172 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+++.... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6665432 101 11345666777777778888888877777654221 11 12566777777888888888888
Q ss_pred HHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHH
Q 014978 242 YDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 242 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+++..+.... ++ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776643211 11 34666778888888888888888887764211 011 44677788888899999999999
Q ss_pred HHHhHhcccCCC---CCHHHHHHHHHHHHHcCChh
Q 014978 312 FKKAIGSVRKWV---PDHRLITAAYNKLEEQGDID 343 (415)
Q Consensus 312 ~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~ 343 (415)
++++.+...... ....++..+...+...|+..
T Consensus 330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 988876322221 12345666666777777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=134.90 Aligned_cols=273 Identities=14% Similarity=0.045 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCC-----cchHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCCC-CcccH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRG-----PDTCSALLHSYVQNKKSAEAEALMEKMSEC----GFLK-CPLPY 83 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 83 (415)
..+..|..+...|++++|+..|+.+....|+ ..++..+...+...|++++|.+.+++..+. +..| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566666667777777777666555443 245556666666666666666666655432 1011 12344
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcC--CCC----HhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNT--SPD----VVTYNLWLAACASQND--------------------KETAEKAF 137 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 137 (415)
..+...+...|++++|...+++..+.. .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 445555555555555555555543320 111 2244444445555555 44444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 138 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
++..+.. ...+. +.....+..+...+...|++++|...+++..+....
T Consensus 167 ~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 167 EENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4332210 00000 011223444555555555555555555554433111
Q ss_pred -cC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCC--
Q 014978 217 -MN----DAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKG-- 284 (415)
Q Consensus 217 -~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 284 (415)
++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01 114555555556666666666666555432111 01 3345556666666666666666666654321
Q ss_pred --CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 285 --IKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 285 --~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
-.+ ...++..+...|.+.|++++|...++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 123556666777777777777777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=134.48 Aligned_cols=270 Identities=15% Similarity=0.064 Sum_probs=144.3
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKETAEKAFLELKKT----K-IDPDWISYSTLTSL 158 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l~~~ 158 (415)
..+...|++++|+..|+++.+..+.+. ..+..+..++...|++++|...+++..+. + .+....++..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 334444444444444444443322222 23444444445555555555544444322 0 01122344445555
Q ss_pred HHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHcCCC-----------------hHHHHHHHHHHHHcc--
Q 014978 159 YIKMELPEKAATTLKEMEKR----T-CRKNRVAYSSLLSLYTNMGY-----------------KDEVLRIWKKMMSLF-- 214 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~~-- 214 (415)
|...|++++|...+++..+. + .+....++..+...+...|+ +++|++.+++..+..
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544332 0 01112344555555555555 555555555544321
Q ss_pred --c-ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-
Q 014978 215 --A-KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGI- 285 (415)
Q Consensus 215 --~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 285 (415)
. .....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 0 111224555666666677777777766665543211 01 12566677777777777777777776654210
Q ss_pred -C---CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 014978 286 -K---PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 286 -~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 357 (415)
. ....++..+...+...|++++|...+++++....... ....++..+...|...|++++|...+++..+...
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 0 0134666777788888888888888888776311111 1134667777888888888888888888877543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=138.08 Aligned_cols=271 Identities=13% Similarity=0.021 Sum_probs=188.9
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCCcCcHHHHHHHHhhc------CCCC
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKN------TSPD 113 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 113 (415)
...+..+...+...|++++|+..|++..+.+ |+. ..|..+...+...|++++|...+++..+. .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667777778888888888888877753 332 35667777777888888888888776543 2334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKT----K-IDPDWISYSTLTSLYIKMEL-----------------PEKAATT 171 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 171 (415)
..++..+..++...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777888888888888888888776543 1 11234467778888888888 8888888
Q ss_pred HHHHHhc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC----hhhHHHHHHHHHhcCChHHHHHH
Q 014978 172 LKEMEKR----TC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 172 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+++..+. +. +....++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776542 11 112346777788888888888888888887664321 11 12677778888888888888888
Q ss_pred HHHHHhccCCC-----CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC----CCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 242 YDEWESISGTG-----DPRVPNILLAAYINRNQLEMAESFYNRLVTKG----IKP-CYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 242 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+++........ ...++..+...|...|++++|...+++..+.. ..+ ...++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 88776542111 14567778888888889888888888776421 001 134677788888899999999999
Q ss_pred HHHhHh
Q 014978 312 FKKAIG 317 (415)
Q Consensus 312 ~~~~~~ 317 (415)
++++.+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998887
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-15 Score=126.91 Aligned_cols=269 Identities=15% Similarity=0.092 Sum_probs=165.7
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPD----VVTYNLWLAACASQNDKETAEKAFLELKKT----KID-PDWISYSTLTSL 158 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~ 158 (415)
..+...|++++|...|+++.+..+.+ ...+..+...+...|++++|...+++..+. +.. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33444444444444444444332222 234445555555555555555555544322 111 113345556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCC--------------------hHHHHHHHHHHHHc
Q 014978 159 YIKMELPEKAATTLKEMEKRTC-RKN----RVAYSSLLSLYTNMGY--------------------KDEVLRIWKKMMSL 213 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~ 213 (415)
+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543210 011 2355666666777777 77777777665543
Q ss_pred c----ccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCC-CC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 214 F----AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 214 ~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
. ..+ ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 111 2336777888889999999999999987653211 11 236778888899999999999999887642
Q ss_pred CC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 284 GI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 284 ~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.. .++ ..++..+...+...|++++|...++++........ ....++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 011 45677788889999999999999998876321111 11346777888899999999999999988875
Q ss_pred C
Q 014978 356 G 356 (415)
Q Consensus 356 ~ 356 (415)
.
T Consensus 333 ~ 333 (338)
T 3ro2_A 333 S 333 (338)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=118.18 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=149.2
Q ss_pred HHHHHHHHhcCcCCC-CcchHHHHHHHHHh-------cCcH-------HHHHHHHHHHHhc-CCCCCcccHHHHHHHHHh
Q 014978 29 RARENFFENLPDKMR-GPDTCSALLHSYVQ-------NKKS-------AEAEALMEKMSEC-GFLKCPLPYNHMLNLYIS 92 (415)
Q Consensus 29 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 92 (415)
++|+..|+.+....| ++..|..++..+.. .|++ ++|..+|++..+. . +.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHh
Confidence 678888888877655 66788877777653 4664 7788888887763 2 2244567777777777
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVV-TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI-KMELPEKAAT 170 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a~~ 170 (415)
.|++++|..+|+++.+..|.+.. +|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887765444444 77777777777888888888888877664 334444443333322 2577788888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-ccc--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 171 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKM--NDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887777652 3456677777777777778888888887777752 233 344666667777777777777777777766
Q ss_pred cc
Q 014978 248 IS 249 (415)
Q Consensus 248 ~~ 249 (415)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 53
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=111.10 Aligned_cols=167 Identities=15% Similarity=0.093 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|..+...|...|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45566666777777777777777777766654 33455666666666677777777777766666556666666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 667777777777776666553 3445566666666777777777777776666653 34556666666667777777777
Q ss_pred HHHHHHHHHc
Q 014978 204 LRIWKKMMSL 213 (415)
Q Consensus 204 ~~~~~~~~~~ 213 (415)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777666653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-13 Score=115.05 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-------cCCc-------CcHHHHHHHHhhc-CCCCHhHHHHHHHHHHh
Q 014978 62 AEAEALMEKMSECGFLKCPLPYNHMLNLYIS-------NGQL-------DKVPQMLQELKKN-TSPDVVTYNLWLAACAS 126 (415)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 126 (415)
++|..+|++..... +.++..|..++..+.. .|++ ++|..+|++..+. .|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 3345555555555442 3554 5666666666553 44455566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCCChHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPD-WI-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT-NMGYKDEV 203 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 203 (415)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666554 232 22 55555555556666666666666655542 223333332222211 24555555
Q ss_pred HHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc-CCC--CCchHHHHHHHHHhcCcHHHHHHHHHHH
Q 014978 204 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS-GTG--DPRVPNILLAAYINRNQLEMAESFYNRL 280 (415)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 280 (415)
..+|++..+..+. +...|..++..+.+.|+.++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544222 33444455555555555555555555554431 122 2234444455555555555555555555
Q ss_pred Hh
Q 014978 281 VT 282 (415)
Q Consensus 281 ~~ 282 (415)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=129.74 Aligned_cols=213 Identities=14% Similarity=0.039 Sum_probs=100.1
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK-ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++++..++......+.+...+..+..++...|++ ++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444333344444455555555555555 55555555544442 223444455555555555555555555554
Q ss_pred HhcCCCCCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc--------CChHHH
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNM---------GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL--------GEFEKA 238 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a 238 (415)
.+. .|+...+..+...+... |++++|+..+++..+..+. +...|..+..++... |++++|
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 443 23344444444555554 5555555555555443221 333444444444444 555555
Q ss_pred HHHHHHHHhccCC--CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 239 ENIYDEWESISGT--GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 239 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
...|++..+..+. .+...+..+..+|...|++++|...|++..+... .+...+..+...+...|++++|++.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555443210 2444455555555555555555555555544321 1333444455555555555555544433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=122.76 Aligned_cols=231 Identities=9% Similarity=0.052 Sum_probs=161.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC------RKNRVAYS 188 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 188 (415)
....+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566777888888888888888754 1111 235677888888888888888888888765311 11234677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhc----cC-CCCCchHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESI----SG-TGDPRVPN 258 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 258 (415)
.+...|...|++++|+..+++..+.....+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888888776522111 136777888888889999888888887662 22 22355677
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCC---CC-CHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGI---KP-CYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
.+...|...|++++|...+++..+... .| ....+..+...+...|+ +++|+.++++... .+.....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML----YADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC----HHHHHHHHHH
Confidence 888888888999998888888764210 11 12234566777777888 7777777776521 2223356677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999999999888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=126.93 Aligned_cols=299 Identities=8% Similarity=-0.022 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCC----CC--cchHHHHHHH--HHhcCcHHHHH-----------HHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKM----RG--PDTCSALLHS--YVQNKKSAEAE-----------ALMEKMSECG 75 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~ 75 (415)
.+.......+.+++++|..+++++.+.. .+ ...|..++.. ..-.++++.+. +.++.+....
T Consensus 15 ~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~ 94 (383)
T 3ulq_A 15 KINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ 94 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC
Confidence 4455556789999999999999876542 22 2333444332 22334444455 6666665432
Q ss_pred CCCCccc------HHHHHHHHHhcCCcCcHHHHHHHHhhc---CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 76 FLKCPLP------YNHMLNLYISNGQLDKVPQMLQELKKN---TSP---DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 76 ~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
++... +......+...|++++|+..|++..+. .+. ...++..+..++...|+++.|...+++..+.
T Consensus 95 --~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 95 --ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111 222556778899999999999998764 222 3467899999999999999999999998754
Q ss_pred C--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 K--I----DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
- . +....+++.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|+..+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1 112357888999999999999999999988753111 11 24788899999999999999999999887
Q ss_pred c----cc-ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCCCchHHHHHHHHHhcCc---HHHHHHHHHHH
Q 014978 213 L----FA-KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG----TGDPRVPNILLAAYINRNQ---LEMAESFYNRL 280 (415)
Q Consensus 213 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 280 (415)
. +. +....++..+...+...|++++|...+++..+... +.....+..+...+...|+ +++|..++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3 22 22355788899999999999999999998765321 1112235667888888898 77777777665
Q ss_pred HhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 014978 281 VTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGS 318 (415)
Q Consensus 281 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 318 (415)
+..| ....+..+...|...|++++|...++++.+.
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2233 3346778889999999999999999998873
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-14 Score=127.59 Aligned_cols=195 Identities=13% Similarity=-0.056 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 148 DWISYSTLTSLYIKMELP-EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444444444444554 55555554444432 2234444444444444455555555554444432 3334444444
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--------CcHHHHHHHHHHHHhCCCC--C
Q 014978 227 SSLVKL---------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINR--------NQLEMAESFYNRLVTKGIK--P 287 (415)
Q Consensus 227 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~--p 287 (415)
..+... |++++|...+++..+.. +.+...|..+..+|... |++++|...|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 444444 44455555554444432 22344444444444444 4455555555444442110 1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
+...|..+...|...|++++|...|+++++. .+.+...+..+..++...|++++|...+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555555555444441 1223334444444444444444444433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-13 Score=107.04 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=103.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...|..+..++...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45556666666666666666666666666553 3345566666666666666666666666665542 334555555666
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
.+...++++.+...+.+.....+. +...+..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666654322 44556666666666666666666666666654 3355566666666666777777
Q ss_pred HHHHHHHHHhC
Q 014978 273 AESFYNRLVTK 283 (415)
Q Consensus 273 a~~~~~~~~~~ 283 (415)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=125.45 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=111.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------TC 180 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 180 (415)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555555555555555442 11222334555555555555555555555555432 11
Q ss_pred -CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc------ccc-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 014978 181 -RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF------AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI---- 248 (415)
Q Consensus 181 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 248 (415)
+....++..+...+...|++++|...++++.+.. ..| ....+..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1123345555555555566666655555554431 111 1223455555555666666666666555442
Q ss_pred --c-CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC-------CCCCCHh-------HHHHHHHHHHhcCCHHHHHHH
Q 014978 249 --S-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCYT-------TWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 249 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~ 311 (415)
+ .+....++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1 0111234455555666666666666666655431 0111111 111122223334445555555
Q ss_pred HHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 312 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
+..... ..+.+..++..+..+|.+.|++++|...|++..+.
T Consensus 267 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555543 12234456677777777778888887777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=126.54 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhc--------
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSEC-------GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-------- 109 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 109 (415)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 466777888888888888888888887763 22223455666777777777777777777775532
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR---- 178 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 178 (415)
.+....++..+..++...|++++|...++++.+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1233456666777777777777777777766543 11 112335566666666667777776666666543
Q ss_pred --CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 179 --TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 179 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+..| ...++..+...+...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233455566666666666666666666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-12 Score=113.30 Aligned_cols=307 Identities=11% Similarity=0.033 Sum_probs=203.8
Q ss_pred CCcchHHHHHHHH--HhcCcHHHHHHHHHHHHhcC--CCCC--cccHHHHHHH--HHhcCCcCcHH---------HHHHH
Q 014978 43 RGPDTCSALLHSY--VQNKKSAEAEALMEKMSECG--FLKC--PLPYNHMLNL--YISNGQLDKVP---------QMLQE 105 (415)
Q Consensus 43 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 105 (415)
|+..+-+.|-.-| ...+++++|.++++++.+.. +..| ...|-.++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444444444444 67888888888888775531 1112 2222333221 11123344444 66766
Q ss_pred HhhcCCC-C--H--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 106 LKKNTSP-D--V--VTYNLWLAACASQNDKETAEKAFLELKKTKI-DP----DWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 106 ~~~~~~~-~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
+.....+ + . ..+......+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6543111 1 1 1233455667889999999999999875421 12 2447788899999999999999999887
Q ss_pred HhcCC-----CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-c----ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 014978 176 EKRTC-----RK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-M----NDAEYTCVISSLVKLGEFEKAENIYDE 244 (415)
Q Consensus 176 ~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 244 (415)
.+... .+ ...+++.+...|...|++++|.+.+++..+.... + ...++..+..++...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 65311 11 2456778889999999999999999988764211 1 123677888899999999999999998
Q ss_pred HHh-----ccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---CCC-HhHHHHHHHHHHhcCC---HHHHHHHH
Q 014978 245 WES-----ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---KPC-YTTWELLTWGYLKKGQ---MEKVLECF 312 (415)
Q Consensus 245 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~a~~~~ 312 (415)
..+ .. +....++..+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 33 22366778889999999999999999998876321 122 2345555566667777 77888887
Q ss_pred HHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 313 KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
++.. ..+.....+..+...|...|++++|...|++..+
T Consensus 327 ~~~~----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN----LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7632 1222335667788889999999999999998865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-11 Score=109.20 Aligned_cols=202 Identities=10% Similarity=0.083 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc----Chhh
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAE 221 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 221 (415)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34444455555555555555544331 111 1 12233444455555555555555555554432110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-chHH-----HHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhHH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTW 292 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~ 292 (415)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 444555555566666666666555443212111 1111 122334556666666666665554221111 1134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhcccCC--CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 293 ELLTWGYLKKGQMEKVLECFKKAIGSVRKW--VPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 293 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+...+...|++++|...++++....... .++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666655421111 1111 2444455566666777777666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=102.81 Aligned_cols=159 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
+..+..+...|++++|++.|+.+....| +..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 3445555566666666666666555543 34455555555556666666666665555442 223344444444445555
Q ss_pred CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
++++|.+.++++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555444444444444444444444444444444444444432 22333444444444444444444444444
Q ss_pred HH
Q 014978 175 ME 176 (415)
Q Consensus 175 ~~ 176 (415)
+.
T Consensus 170 ~~ 171 (186)
T 3as5_A 170 AN 171 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=102.95 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655442 2344455555556666666666666666655555555555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 205 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 205 (415)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655542 3344555555555666666666666665555542 3344555555555555555555555
Q ss_pred HHHHHHHc
Q 014978 206 IWKKMMSL 213 (415)
Q Consensus 206 ~~~~~~~~ 213 (415)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-10 Score=107.74 Aligned_cols=361 Identities=8% Similarity=-0.010 Sum_probs=208.9
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCc---HHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCc-
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKK---SAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQL- 96 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~- 96 (415)
.+.+.++.+..+|+.+...-| ....|...+..-.+.++ ++.+..+|++..... .+|++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 345677777777777777655 45566677777777777 777777777777643 126666676666555554443
Q ss_pred -------CcHHHHHHHHhhc--C--CCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 014978 97 -------DKVPQMLQELKKN--T--SPDVVTYNLWLAACAS---------QNDKETAEKAFLELKKTKIDPDWISYST-- 154 (415)
Q Consensus 97 -------~~a~~~~~~~~~~--~--~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 154 (415)
+...++|+..... . +.+...|...+..... .++++.+..+|++++......-..+|..
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~ 236 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYT 236 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2233556654432 1 2244566666655432 2345566666666664311111112211
Q ss_pred -----------------------------------------------------------------------HHHHHHhcC
Q 014978 155 -----------------------------------------------------------------------LTSLYIKME 163 (415)
Q Consensus 155 -----------------------------------------------------------------------l~~~~~~~~ 163 (415)
.+..--..+
T Consensus 237 ~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~ 316 (679)
T 4e6h_A 237 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316 (679)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCC
Confidence 110000000
Q ss_pred -------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH-HHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 164 -------LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL-RIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 164 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
..+.+..+|+++... ++-....|...+..+...|+.++|. ++|++.... .+.+...|...+......|++
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred ccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCH
Confidence 011122334444333 2334445555555556667777775 788777653 223444566667777778888
Q ss_pred HHHHHHHHHHHhcc---------CCCC------------CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHH
Q 014978 236 EKAENIYDEWESIS---------GTGD------------PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 294 (415)
Q Consensus 236 ~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 294 (415)
+.|..+|+.+.+.. ..|+ ..+|...+....+.|+.+.|..+|.+.++....+....|..
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~ 474 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888888776531 0121 23566667777777888888888888876511122334443
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Q 014978 295 LTWGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTY 370 (415)
Q Consensus 295 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 370 (415)
.+..-.+. ++.+.|..+|+.+++ ..+-+...+...+......|+.+.|+.+|++.....+. ....|...+..-
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk---~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLK---YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333333 447888888888877 24445666667777777788888888888888876663 346788888888
Q ss_pred HhcCCC--cHHHHHHHHhCC
Q 014978 371 AKAGKM--PLIIVERMQKDN 388 (415)
Q Consensus 371 ~~~g~~--a~~~~~~m~~~~ 388 (415)
.+.|+. +..+.+++.+.-
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 888887 366667666653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-11 Score=107.23 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=157.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCCC----HhHHHHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPL-----PYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD----VVTYNLW 120 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l 120 (415)
...+...|++++|...+++..... +++.. ++..+...+...|++++|...+++.... ..++ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455666666666666655432 11111 2344445555666666666666665432 1111 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHHHH
Q 014978 121 LAACASQNDKETAEKAFLELKKT----KID--P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR----KNRVAYSS 189 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 189 (415)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66677777777777777766542 211 2 2335556677777778888887777776653211 12345666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccCh-hhHH-----HHHHHHHhcCChHHHHHHHHHHHhccCCCC---CchHHHH
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYT-----CVISSLVKLGEFEKAENIYDEWESISGTGD---PRVPNIL 260 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 260 (415)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 777777788888888888877654222211 1111 223346678888888888877655332111 1134566
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 261 LAAYINRNQLEMAESFYNRLVTK----GIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+...|++++|...++..... |..++. ..+..+...+...|+.++|...++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77788888888888888876542 211122 2555667778888999999999888876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-12 Score=106.68 Aligned_cols=194 Identities=8% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-C----hhhHHHHHH
Q 014978 158 LYIKMELPEKAATTLKEMEKR----TCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-N----DAEYTCVIS 227 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~ 227 (415)
.|...|++++|...|++.... |-+++ ..+|+.+..+|...|++++|+..+++..+..... + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666655555432 11111 3455566666666666666666666555432111 1 224556666
Q ss_pred HHHhc-CChHHHHHHHHHHHhccCCC-C----CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH------hHHHHH
Q 014978 228 SLVKL-GEFEKAENIYDEWESISGTG-D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWELL 295 (415)
Q Consensus 228 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l 295 (415)
.|... |++++|...+++..+..... + ..++..+...+...|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 77777776666665432111 1 234566666777777777777777776664322111 135556
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCH------HHHHHHHHHHH--HcCChhHHHHHHHHHHHc
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDH------RLITAAYNKLE--EQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 355 (415)
..++...|++++|...|++++. +.|+. ..+..++.++. ..+++++|...|+.+...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS----EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC----C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 6666777777777777777655 23321 12333444443 234566666666555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=124.11 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+..|.+..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888888888888888888888887764 33466777788888888888888888888777777778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 203 (415)
+...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888887764 4456678888888888888888888888887763 34567788888888888888888
Q ss_pred HHHHHHHHH
Q 014978 204 LRIWKKMMS 212 (415)
Q Consensus 204 ~~~~~~~~~ 212 (415)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=101.29 Aligned_cols=210 Identities=11% Similarity=-0.024 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 225 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (415)
+.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34668888999999999999999999999998753377888888999999999999999999999886543 55678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCCC-------chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhHHHHH
Q 014978 226 ISSLVKLGEFEKAENIYDEWESISGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWELL 295 (415)
Q Consensus 226 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 295 (415)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++.++. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998865 3344 45777888889999999999999999985 455 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
...|...| ...++++... ...+...+.... ....+.+++|...+++..+..|.+..+...+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77775544 4445555551 233444444443 3345678999999999999998887776665443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-10 Score=106.82 Aligned_cols=357 Identities=9% Similarity=-0.017 Sum_probs=233.4
Q ss_pred hHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC---cCcHHHHH
Q 014978 28 TRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ---LDKVPQML 103 (415)
Q Consensus 28 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 103 (415)
..+.+..|+......| |..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3344555666555555 8899999999999999999999999999987 45677788888888888888 99999999
Q ss_pred HHHhhcC--CCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------
Q 014978 104 QELKKNT--SPDVVTYNLWLAACASQNDK--------ETAEKAFLELKK-TKI-DPD-WISYSTLTSLYIK--------- 161 (415)
Q Consensus 104 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~~--------- 161 (415)
++..... +|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998886 48999999998877776654 334577777664 365 454 4577777665432
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHH---------------------------------------------
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYS---SLLSL--------------------------------------------- 193 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~--------------------------------------------- 193 (415)
.++++.+.++|+.+.......-..+|. .+...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 334667777777776421110111221 11111
Q ss_pred -------------------------HHcCC-------ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHH-H
Q 014978 194 -------------------------YTNMG-------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE-N 240 (415)
Q Consensus 194 -------------------------~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~ 240 (415)
--..+ ..+.+..+|++++... +-....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 00000 0011223344443331 113344555555566678888886 8
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---------CCC------------HhHHHHHHHHH
Q 014978 241 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---------KPC------------YTTWELLTWGY 299 (415)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~ 299 (415)
+++...... +.+...|...+....+.|+++.|..+|+.++.... .|+ ..+|...+...
T Consensus 366 il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 888887653 44555667777888888889999998888875310 132 23577777777
Q ss_pred HhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--
Q 014978 300 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM-- 376 (415)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 376 (415)
.+.|+.+.|..+|.+++. ....+....|...+..-.+. ++.+.|..+|+...+.-+.+...|...+......|+.
T Consensus 445 rR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 788888999999998887 21122334444333333333 4588999999988888666778888888888888877
Q ss_pred cHHHHHHHHhCCC
Q 014978 377 PLIIVERMQKDNV 389 (415)
Q Consensus 377 a~~~~~~m~~~~~ 389 (415)
+..+|++.....-
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 5778887766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-12 Score=111.30 Aligned_cols=293 Identities=10% Similarity=0.001 Sum_probs=203.7
Q ss_pred HHHHhhhhHHHHHHHHhcCcCC------CCcchHHHHHHHH--HhcCcHH---------HHHHHHHHHHhcCCCCCc---
Q 014978 21 AQAQALQTRARENFFENLPDKM------RGPDTCSALLHSY--VQNKKSA---------EAEALMEKMSECGFLKCP--- 80 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~li~~~--~~~~~~~---------~a~~~~~~~~~~~~~~~~--- 80 (415)
.....+++++|.++++++.... ++...|-.++..- .-.+.+. ...+.++.+.....+.+.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 4478999999999998765431 2233344443321 1112222 222566665442211111
Q ss_pred -ccHHHHHHHHHhcCCcCcHHHHHHHHhhc--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---CC-
Q 014978 81 -LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSP----DVVTYNLWLAACASQNDKETAEKAFLELKKTK--I---DP- 147 (415)
Q Consensus 81 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~---~~- 147 (415)
..+......+...|++++|+..|++..+. ..+ ...++..+..++...|+++.|...+++..+.. . .+
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 12233445677899999999999998764 112 24578889999999999999999999887531 1 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----ccccc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-----LFAKM 217 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 217 (415)
...+++.+..+|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|+..+++..+ ..+.
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~- 259 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL- 259 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence 2457888999999999999999999988753 111 1234678899999999999999999999887 3333
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-C---CchHHHHHHHHHhcCc---HHHHHHHHHHHHhCCCCCC-H
Q 014978 218 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-D---PRVPNILLAAYINRNQ---LEMAESFYNRLVTKGIKPC-Y 289 (415)
Q Consensus 218 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~ 289 (415)
...++..+...+.+.|++++|...+++..+..... + ...+..+...+...++ +.+|...++.. +..|+ .
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHH
Confidence 35678889999999999999999999988753221 1 2234555666667777 77777777652 22232 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..+..+...|...|++++|...|+++.+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4667888999999999999999999876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-12 Score=122.01 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=146.1
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..+|+.+..++.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456789999999999999999999999988888889999999999999999999999999998874 4467789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
|.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+..+. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999998864 446788999999999999999999999999886543 566888899999999999999
Q ss_pred HHHHHHHHh
Q 014978 239 ENIYDEWES 247 (415)
Q Consensus 239 ~~~~~~~~~ 247 (415)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-12 Score=103.21 Aligned_cols=195 Identities=15% Similarity=0.021 Sum_probs=108.6
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
++..+......+...|++++|++.|++..+...+++...+..+..++...|++++|+..|++..+..|.+..+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666666666666666666666666554224455555566666666666666666666665555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDW-------ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSL 193 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 193 (415)
+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 666666666666666666552 2233 34555666666666666666666666654 233 3445555555
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
+... +...++++...+.. +...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 5432 22333443333211 222232222 223445666777777666653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-12 Score=105.83 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=113.7
Q ss_pred HhcCCcCcHHHHHHHHhhc--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 014978 91 ISNGQLDKVPQMLQELKKN--------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTL 155 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 155 (415)
...|++++|+..|++..+. .+....++..+..++...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888776542 2334567888888888999999999888888754 21 2234577888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc------cccc-Chhh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR------T-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL------FAKM-NDAE 221 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 221 (415)
..+|...|++++|.+.++++... . .+....++..+...+...|++++|...++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999998888887654 1 1223556778888888888888888888888765 1122 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=103.27 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=157.4
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------TC-RKNRVAYSSL 190 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 190 (415)
...|++++|..++++..+. ..+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777776542 22334568889999999999999999999998764 21 2235678889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcc-----c--ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------c-CCCCCch
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLF-----A--KMNDAEYTCVISSLVKLGEFEKAENIYDEWESI------S-GTGDPRV 256 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 256 (415)
...+...|++++|...++++.... . +....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987752 1 123457888899999999999999999988764 1 1123457
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHhcCC------HHHHHHHHHHhHhcccCC
Q 014978 257 PNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCY-TTWELLTWGYLKKGQ------MEKVLECFKKAIGSVRKW 322 (415)
Q Consensus 257 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 322 (415)
+..+...|...|++++|..++++..+. ...+.. ..|..+...+...+. +..+...++.... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence 788899999999999999999988753 122322 233333333333332 2223333322211 11
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 323 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 323 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
+....++..+...|...|++++|...+++..+.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456788889999999999999999988754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=98.30 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHH----------------HHHHHHhcCcHHHHHHHHHHHHhcCC
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSA----------------LLHSYVQNKKSAEAEALMEKMSECGF 76 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~ 76 (415)
..+..+..+.+.|++++|+..|+.+....| ++.+|.. +..++.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 356677888888888888888888877655 3444544 4444444444444444444444432
Q ss_pred CCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 77 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
+.+...+..+..++...|++++|+..|++..+..|.+..+|..+..++.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2233344444444444444444444444444444444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=97.71 Aligned_cols=234 Identities=9% Similarity=0.027 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-C-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 63 EAEALMEKMSECGFLKCPLPYNHMLNLYISN-G-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 140 (415)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (415)
+|.+++.+..+. .+++...| .+ +... + ++++|...|++. +..+...|++++|...|++.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 466677776665 22222223 22 2211 2 477888887776 44677889999999999888
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcC-CChHHHHHHHHH
Q 014978 141 KKT----KIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNM-GYKDEVLRIWKK 209 (415)
Q Consensus 141 ~~~----g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~ 209 (415)
.+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+.... .+ ..++..+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 654 32222 458889999999999999999999888753111 11 35788889999996 999999999999
Q ss_pred HHHccccc-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCcHHHHHHHHH
Q 014978 210 MMSLFAKM-N----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 210 ~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
..+..... + ..++..+...+...|++++|...|++..+..+..... .+..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88753321 1 3467888999999999999999999998865433221 46777888999999999999999
Q ss_pred HHHhCCCCCCHh------HHHHHHHHHH--hcCCHHHHHHHHHHhHh
Q 014978 279 RLVTKGIKPCYT------TWELLTWGYL--KKGQMEKVLECFKKAIG 317 (415)
Q Consensus 279 ~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 317 (415)
+..+. .|+.. .+..++..+. ..+++++|+..|+.+..
T Consensus 224 ~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 224 EGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 98864 33321 2344555554 45678888888877644
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-09 Score=91.15 Aligned_cols=242 Identities=11% Similarity=-0.035 Sum_probs=123.5
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 132 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (415)
+-..-.|++..++.-..++... .+ ...-..+.+++...|++.... ..+|....+..+...+. .+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~--~~-~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~-~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV--TD-NTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD-TK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC--CC-HHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT-TT----
T ss_pred HHHHHhhHHHHHHHHHHhcCcc--ch-HHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc-cc----
Confidence 3344467777666633222110 11 112222346666666665421 12344434444444432 11
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 133 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 133 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
|+..|++..+.+ +++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 34445555666677777777777777776655432 1244555666677777777777777777775
Q ss_pred Hccccc-----ChhhHHHHHHH--HHhcC--ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 212 SLFAKM-----NDAEYTCVISS--LVKLG--EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 212 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 23344444444 22223 666677777766543 23322223333356666666666666665443
Q ss_pred CC-----C---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 283 KG-----I---KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 283 ~~-----~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.- . .| |+.++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 0 12 34445444444444554 55666666655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-10 Score=91.80 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=139.5
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
+-..-.|.+..++.-..++.. ......-.-+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344456777776663322211 11122333344666666766531 11123333333333332 222
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666544 345555556667777777777777777776554431 134456666777777777777777777776
Q ss_pred hccCCC-----CCchHHHHHHHHH--hcC--cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 247 SISGTG-----DPRVPNILLAAYI--NRN--QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 247 ~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 2344444554422 233 677777777777654 34433444555567777777777777775544
Q ss_pred cccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 318 SVRK-------WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 318 ~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.... -+.+..++..+|......|+ +|.++++++.+..|..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 1101 13345555555555555665 67777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=92.63 Aligned_cols=141 Identities=9% Similarity=-0.074 Sum_probs=88.2
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 99 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (415)
.+...|++++|+..++.+....| ++..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34456677777777777666544 34556666777777777777777777776654 33556666666777777777777
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 100 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA-FLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+..|++..+..|.+..+|..+..++.+.|++++|.+. +++..+.. |-++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777776666666666677777777777766554443 45555542 334455555555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=84.87 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
.++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33334444444444444444443332 2223333334444444444444444444443332 222333333444444444
Q ss_pred ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 199 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
++++|...++++.+..+ .+...+..+...+...|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444433221 122333334444444444444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-10 Score=96.67 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC---CHhHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DVVTY 117 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 117 (415)
++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++.+..|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 33444455555555555555555555555432 111 233444445555555555555555555443221 12334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhC
Q 014978 118 NLWLAACAS--------QNDKETAEKAFLELKKT 143 (415)
Q Consensus 118 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 143 (415)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444444444 45555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-10 Score=91.88 Aligned_cols=191 Identities=10% Similarity=-0.066 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc-cC-hhhHH
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN-DAEYT 223 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~ 223 (415)
...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|+..|++..+..+. |. ...+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344444444555555555555555554432 112 334444555555555555555555555543221 11 12334
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 014978 224 CVISSLVK--------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 295 (415)
Q Consensus 224 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 295 (415)
.+..++.. .|++++|...|+++.+..+. +......+.... .+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------------~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------------ELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------------HHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------------HHHHH----HHHHHHHH
Confidence 44444444 55555555555555544211 222221111100 00000 00113445
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCC
Q 014978 296 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 359 (415)
...|.+.|++++|+..|+++++...........+..+..+|... |++++|...|+++.+..|.+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 55666666677777766666652111111234555555666544 66677777777777666654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=92.85 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YI 91 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 91 (415)
..+..+..+.+.|++++|+..|+.+....| ++.++..+...+...|++++|+..+++..... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 356778888999999999999999988766 57888999999999999999999999887654 443333222212 22
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAAT 170 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~ 170 (415)
..+....|+..+++..+..|.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 33344567888888877777888888889999999999999999999888774222 34578888888888888888888
Q ss_pred HHHHHHh
Q 014978 171 TLKEMEK 177 (415)
Q Consensus 171 ~~~~~~~ 177 (415)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-10 Score=85.53 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+...|++++|..+++++.+..+.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+...|+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444433333344444444444444455555555554444432 2233444444455555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555544432 22344444455555555555555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-08 Score=86.19 Aligned_cols=235 Identities=8% Similarity=0.020 Sum_probs=128.0
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQN--DKETAEKAFLELKKTKIDPDWISYSTLTSLY----IKM---ELPEK 167 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~---~~~~~ 167 (415)
++|+++++.+....|.+..+|+.-..++...+ ++++++.+++.+.... +-+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 35666666655555555556666555555555 5555555555555543 22333444333322 222 34445
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ..++.+.++.+.+
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~i~ 174 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHHHH
Confidence 555554444432 234444444444444444444 0044444444444
Q ss_pred ccCCCCCchHHHHHHHHHhcCc------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHhHhccc
Q 014978 248 ISGTGDPRVPNILLAAYINRNQ------LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK-VLECFKKAIGSVR 320 (415)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 320 (415)
.+ +.|...|+.-...+.+.+. ++++++.++.++...+ -|...|+.+...+.+.|+... +..+..+..+...
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 43 2244444444333333333 6677777777776543 266677777777777666433 4456665554211
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCHHHHHHHHH
Q 014978 321 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHVSTEIYNSLLR 368 (415)
Q Consensus 321 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 368 (415)
.-..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|+..++
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 1244667777888888888888888888888876 57766666765543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=92.89 Aligned_cols=180 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----cHHH
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNH 85 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 85 (415)
..+..+..+.+.|++++|+..|+.+....|+. .++..+..++.+.|++++|+..|+++.+.. |+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence 46778889999999999999999988776642 578888999999999999999999998864 4432 3444
Q ss_pred HHHHHHh------------------cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014978 86 MLNLYIS------------------NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 147 (415)
Q Consensus 86 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 147 (415)
+..++.. .|++++|+..|+++.+..|.+..++........ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 4444443 455666666666666655555444332211100 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-H---HHHHHHHHHHHcCCChHHHHHHHHHHHHccc
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-R---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 215 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (415)
......+...|.+.|++++|...|+++.+.. |+ . ..+..+..++.+.|++++|.+.++.+...++
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112356778888999999999999988762 33 2 4577888999999999999999998877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-10 Score=89.37 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCc
Q 014978 190 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 269 (415)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 269 (415)
+..++.+.|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 667777777777777777777765433 55567777777777777777777777777664 3356666666666655443
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHH
Q 014978 270 --LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 331 (415)
Q Consensus 270 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 331 (415)
...+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHH
Confidence 3344444444432 122222333445556667777788888877765 5666554433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=115.47 Aligned_cols=170 Identities=10% Similarity=-0.045 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHH--------hcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 59 KKSAEAEALMEKMS--------ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 59 ~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|+++.+..|.+...|..+..++...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 56666666666665 322 234455666666666666666666666666655566666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
++|...|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|++.|+++
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666666666553 3345566666666666666666 66666666553 334556666666666666666666666666
Q ss_pred HHcccccChhhHHHHHHHHHhcC
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLG 233 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g 233 (415)
.+..+. +...+..+..++...+
T Consensus 561 l~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 561 PPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp CTTSTT-HHHHHHHHHHHTC---
T ss_pred cccCcc-cHHHHHHHHHHHHccC
Confidence 553221 2334444555544433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=110.34 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=152.8
Q ss_pred HhcCCcCcHHHHHHHHh--------hcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 014978 91 ISNGQLDKVPQMLQELK--------KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 162 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (415)
...|++++|++.+++.. +..+.+...+..+..++...|++++|...|+++.+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999988 5578888999999999999999999999999999874 55778999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+..+. +...+..+..++...|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999874 4467888999999999999999 9999999986543 5678889999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCc--------HHHHHHHHHHH
Q 014978 243 DEWESISGTGDPRVPNILLAAYINRNQ--------LEMAESFYNRL 280 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~ 280 (415)
+++.+.+ +.+...+..+..++...++ +++|.+.+..+
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9987754 2246677777777766443 44555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-10 Score=95.32 Aligned_cols=199 Identities=9% Similarity=-0.014 Sum_probs=112.1
Q ss_pred HhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 24 QALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 24 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
..|++++|.++++++.+..+.. + +...++++.|...|.+. ...|...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 4677888888887766542321 0 11146777777777654 34566677777777777
Q ss_pred HHHhhc---CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 014978 104 QELKKN---TS---PDVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTL 172 (415)
Q Consensus 104 ~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 172 (415)
.+..+. .. .-..+|+.+..+|...|++++|...|++..+. |-.. ...++..+..+|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 765432 11 11345666777777777777777777765533 1110 12355566666666 7777777666
Q ss_pred HHHHhcCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHH
Q 014978 173 KEMEKRTCRK-----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIY 242 (415)
Q Consensus 173 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 242 (415)
++........ ...++..+...+...|++++|+..|++........+ ...+..++.++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655421000 124455666666666666666666666655321110 113444444555556666666666
Q ss_pred HHHH
Q 014978 243 DEWE 246 (415)
Q Consensus 243 ~~~~ 246 (415)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-11 Score=89.71 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
|...+...|++++|++.++...... +.+...+-.+...|.+.|++++|++.|++..+..|.+..+|..+..++.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445556677777777777766542 223445556777777778888888888777776777777777777777777788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT-LKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
++|...|++..+.. +-+..++..+..+|.+.|++++|.+. +++..+.. |-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 77777777777663 34566777777777777777665544 46666552 3355666666666555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-08 Score=88.15 Aligned_cols=353 Identities=9% Similarity=0.021 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCc-HHHHHHHHHHHHhc-CC-CCCcccHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKK-SAEAEALMEKMSEC-GF-LKCPLPYNHMLNL 89 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~ 89 (415)
..++..++.....|+++.+..+|+......|+...|...+....+.++ .+....+|+..... |. +++...|...+..
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 346677777777799999999999999988999999998888877663 45677888887754 42 2355667776665
Q ss_pred HH----hcCCcCcHHHHHHHHhhcCCCC--HhHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhCCCCCCHH
Q 014978 90 YI----SNGQLDKVPQMLQELKKNTSPD--VVTYNLWLAACAS-------------QNDKETAEKAFLELKKTKIDPDWI 150 (415)
Q Consensus 90 ~~----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~ 150 (415)
+. .+++.+.+..+|++.... |+. ...|......-.. .+.+..|..+++.+...--..+..
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 43 245677899999998873 332 1233333222111 122333444444443210011333
Q ss_pred HHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHH
Q 014978 151 SYSTLTSLYIKME--L-----PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 223 (415)
Q Consensus 151 ~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (415)
.|...+..-...+ - .+.+..+|+++... ++.+...|...+..+.+.|+++.|..++++.... |....+.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~ 249 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence 5555554422211 1 34567889998876 3567888998899999999999999999999987 4433221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccC------------CCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhH
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESISG------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 291 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 291 (415)
. .|....+.++. ++.+.+.-. ......|...+....+.++.+.|..+|++. .. ..++...
T Consensus 250 ~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 250 L---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp H---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred H---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 1 22222222222 222222100 001245666777777788899999999999 32 1234455
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 292 WELLTWGYLK-KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 292 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
|......-.. .++.+.|..+|+.+++. .+-+...+...+....+.|+.+.|..+|+++ ......|...+..-
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE 394 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5433322222 34799999999999883 3334556666777778899999999999997 23568899999888
Q ss_pred HhcCCCc--HHHHHHHH
Q 014978 371 AKAGKMP--LIIVERMQ 385 (415)
Q Consensus 371 ~~~g~~a--~~~~~~m~ 385 (415)
...|+.. ..++++..
T Consensus 395 ~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 8889873 45566554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=107.10 Aligned_cols=153 Identities=7% Similarity=-0.043 Sum_probs=121.4
Q ss_pred hhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHH
Q 014978 25 ALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 103 (415)
Q Consensus 25 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (415)
.|++++|++.|+++....| +..+|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999988766 57889999999999999999999999999875 445778888999999999999999999
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 014978 104 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM---ELPEKAATTLKEMEKRT 179 (415)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 179 (415)
++..+..+.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99988888889999999999999999999999999999874 45677889999999999 99999999999998874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-08 Score=85.34 Aligned_cols=220 Identities=12% Similarity=0.061 Sum_probs=147.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC--CcCcHHHHHHHHhhcCCCCHhHHHHHHHHH----Hhc---CC
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG--QLDKVPQMLQELKKNTSPDVVTYNLWLAAC----ASQ---ND 129 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 129 (415)
...++|+++++.++..+ +-+..+|+.-..++...+ +++++++.++.+....|.+..+|+.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 33457777777777754 234455666666676666 777778877777776777777777666555 444 67
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC------hH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE--KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY------KD 201 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 201 (415)
+++++.+++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 778888888877764 456667777777777777777 7888888887764 3466677766666666665 67
Q ss_pred HHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCcHHHHHHHHH
Q 014978 202 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK-AENIYDEWESIS--GTGDPRVPNILLAAYINRNQLEMAESFYN 278 (415)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 278 (415)
++++.+++++...+. |...|+-+...+.+.|.... +..+..++.+.+ ...++..+..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777776544 66667766666666666333 444555544322 12355566777777777777777777777
Q ss_pred HHHh
Q 014978 279 RLVT 282 (415)
Q Consensus 279 ~~~~ 282 (415)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=101.83 Aligned_cols=152 Identities=7% Similarity=-0.089 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 59 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFL 138 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (415)
|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555444432 12234444444455555555555555555444444444455555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHc
Q 014978 139 ELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM---GYKDEVLRIWKKMMSL 213 (415)
Q Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 213 (415)
+..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 544442 2233444445555555555555555555544432 22334444444444444 4455555555544443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-09 Score=85.60 Aligned_cols=189 Identities=12% Similarity=-0.012 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh--hhHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYT 223 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 223 (415)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667788889999999999999999875311 1 1356777889999999999999999999886543221 1344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-H-----------
Q 014978 224 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-T----------- 291 (415)
Q Consensus 224 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~----------- 291 (415)
.+..++...|.. .+ ..+..+...+...|+.++|...|+++++.. |+.. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 445555432110 00 001111222223344444444444444431 2111 1
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 292 ------WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 292 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
...+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+|.+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 124556778889999999999998873 233 2567788888999999999999999888877764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-10 Score=88.11 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKM 162 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~ 162 (415)
..+...+...|++++|...|++..+..|.+...+..+..++...|++++|...+++..+.. |+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3344445555555555555555444444455555555555555555555555555544432 222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-ChhhHHHHHHHHHhcCChHHHHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLVKLGEFEKAENI 241 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 241 (415)
+...+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223444444444431 2234444445555555555555555555554433221 123444444455555555555555
Q ss_pred HHHH
Q 014978 242 YDEW 245 (415)
Q Consensus 242 ~~~~ 245 (415)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=96.29 Aligned_cols=167 Identities=8% Similarity=0.010 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++....|............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455566666666677777777777666653 23445566666666667777777776666654433222222233333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCChHH
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 202 (415)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666666666666553 445556666666677777777777777666665211 114456666666666677666
Q ss_pred HHHHHHHHHH
Q 014978 203 VLRIWKKMMS 212 (415)
Q Consensus 203 a~~~~~~~~~ 212 (415)
|...|++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-09 Score=92.38 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 014978 58 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 137 (415)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (415)
.|++++|.+++++..+.. +. .+ +...++++.|...|.+. +..|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~-----~~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT-----SF---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC-----CS---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc-----cc---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 456666666666655432 11 01 11134555555555443 34455666666666666
Q ss_pred HHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHcCCChHHHHHHH
Q 014978 138 LELKKTK----IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---RKN--RVAYSSLLSLYTNMGYKDEVLRIW 207 (415)
Q Consensus 138 ~~~~~~g----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 207 (415)
.+..+.. -.+ -..+|+.+..+|.+.|++++|+..|++..+.-. .+. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6554321 000 123455555556666666666666655543210 011 2334445555554 5555555555
Q ss_pred HHHHHcccccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 208 KKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 208 ~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
++..+.....+ ..++..+...+...|++++|...|++..
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544321100 1233344444444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-09 Score=83.70 Aligned_cols=176 Identities=11% Similarity=-0.016 Sum_probs=93.6
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----LPEKAATTLK 173 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 173 (415)
+|++.|++..+ ..+..++..+...+...+++++|..+|++..+.| +...+..|...|.. + ++++|.++|+
T Consensus 4 eA~~~~~~aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 34455555443 2455556666666666666666666666665554 34455555555555 4 5666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcccc-cChhhHHHHHHHHHh----cCChHHHHHHHHH
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVK----LGEFEKAENIYDE 244 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 244 (415)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 55666666666666554321 013445555555555 4556666666665
Q ss_pred HHhccCCCCCchHHHHHHHHHhc-C-----cHHHHHHHHHHHHhCC
Q 014978 245 WESISGTGDPRVPNILLAAYINR-N-----QLEMAESFYNRLVTKG 284 (415)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 284 (415)
..+. ..+...+..|...|... | +.++|..+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5543 12333444555555432 2 5556666665555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=92.58 Aligned_cols=168 Identities=10% Similarity=-0.004 Sum_probs=115.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014978 110 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 189 (415)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (415)
.|.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 46666677777777778888888888888777663 445567777777788888888888888777665 344333222
Q ss_pred -HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHhc
Q 014978 190 -LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINR 267 (415)
Q Consensus 190 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 267 (415)
....+...++.++|...+++.....+. +...+..+...+...|++++|...+.++.+..+.. +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 223355666777777777777775433 55667777777778888888888888777764221 255677777778778
Q ss_pred CcHHHHHHHHHHHH
Q 014978 268 NQLEMAESFYNRLV 281 (415)
Q Consensus 268 g~~~~a~~~~~~~~ 281 (415)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88777777776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-09 Score=83.15 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----ChHHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG----YKDEVLRIW 207 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 207 (415)
+|.+.|++..+.| ++..+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666554 45556666666666666666666666666543 44455555555555 4 566666666
Q ss_pred HHHHHcccccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHh----cCcHHHHHHHHH
Q 014978 208 KKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGT-GDPRVPNILLAAYIN----RNQLEMAESFYN 278 (415)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 278 (415)
++..+.+ +...+..+...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654433 33344444444443 44555555555544443210 013334444444444 334444444444
Q ss_pred HHHh
Q 014978 279 RLVT 282 (415)
Q Consensus 279 ~~~~ 282 (415)
+..+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-08 Score=87.46 Aligned_cols=331 Identities=11% Similarity=0.027 Sum_probs=205.4
Q ss_pred Hhh-hhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-cCcHHH
Q 014978 24 QAL-QTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQ 101 (415)
Q Consensus 24 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 101 (415)
+.| +++.|..+|+.+...-|. |+++.+..+|+..... .|+...|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 455 377788888877665454 8899999999999985 4799999998887777663 467788
Q ss_pred HHHHHhhc---CCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------
Q 014978 102 MLQELKKN---TSPDVVTYNLWLAACA----SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK------------- 161 (415)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~------------- 161 (415)
+|+..... .+.+...|...+..+. ..++++.+..+|++.+......-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887764 3567788888888765 356788999999999975321111223222221111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC--C-----hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG--Y-----KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
.+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++....+ .+...|...+..+...|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 1223334444444443200113446666665543321 1 3457789999887643 356678878888889999
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC---------CCCC---CHhHHHHHHHHHHhc
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK---------GIKP---CYTTWELLTWGYLKK 302 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~p---~~~~~~~l~~~~~~~ 302 (415)
.+.|..+++..... +.+...+. .|....+.++. ++.+.+. +..+ ....|...+....+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 99999999999987 33333332 22222111221 2222211 0001 124567777777778
Q ss_pred CCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHH
Q 014978 303 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLI 379 (415)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~ 379 (415)
++.+.|..+|.++ .. . ..+...|......-.. .++.+.|..+|+...+..+.++..|...++...+.|+. +..
T Consensus 300 ~~~~~AR~i~~~A-~~-~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HCHHHHHHHHHHH-TT-S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999 41 2 2355555443333223 34699999999999998776777788888877888876 355
Q ss_pred HHHHH
Q 014978 380 IVERM 384 (415)
Q Consensus 380 ~~~~m 384 (415)
+|++.
T Consensus 376 l~er~ 380 (493)
T 2uy1_A 376 LFKRL 380 (493)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-09 Score=84.36 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 94 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (415)
.+..+..+...|++++|++.|+.+.. |++.+|..+...+...|++++|++.|++..+.. +.+...|..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 46778888899999999999998864 678889999999999999999999999988765 445677888888899999
Q ss_pred CcCcHHHHHHHHhhcCCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 95 QLDKVPQMLQELKKNTSPDV----------------VTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
++++|++.|++..+..+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999998887655544 778888888888888888888888888763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=88.56 Aligned_cols=194 Identities=9% Similarity=-0.006 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHH-------HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSAL-------LHSYVQNKKSAEAEALMEKMSECGFLKCPL---- 81 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 81 (415)
..|..+..+ +.++...|.+.|..+....| ....|..+ ...+...++..+++..+..-.+ +.|+..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~ 85 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEE
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhh
Confidence 345555554 57777777777777777666 35667666 3444444444444444443332 222110
Q ss_pred ------------------cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 82 ------------------PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 82 ------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.+..+...+...|++++|.++|+.+....|.+. ....+...+.+.+++++|+..|+.....
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 111233444555555555555555443322223 4444444555555555555555433322
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 KIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
. .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 110 12344445555555555555555555543221122 12333344444555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=80.98 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=75.6
Q ss_pred HHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 34 FFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 34 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.|+.+....| ++.++..+...+.+.|++++|+..|++..... |.+...|..+..++...|++++|+..|++..+..|.
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444444 45566777777777777777777777777654 345666777777777777777777777777666666
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|..+..++...|++++|...|++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-07 Score=78.80 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=132.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc-
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ- 127 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 127 (415)
.+-....+.+..++|++++++++..+ +.+..+|+.--.++...| .+++++++++.+....|.+..+|+.-..++.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 33333445566678999999988865 335566777777777777 488999999998888888888998888887777
Q ss_pred C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC
Q 014978 128 N-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE--------KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 198 (415)
Q Consensus 128 ~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 198 (415)
+ ++++++.+++++.+.. +-|...|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 8888999999988774 456677776666666655555 8888888888774 457778888877777777
Q ss_pred C-------hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC
Q 014978 199 Y-------KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 234 (415)
Q Consensus 199 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 234 (415)
. ++++++.+++++...+. |...|+-+-..+.+.|.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 5 57888888888776543 56667666555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=79.95 Aligned_cols=127 Identities=11% Similarity=-0.061 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+...|++++|++.|++.. .|+...|..+..++...|++++|+..|++..+..+.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556677778888888888887663 45667788888888888888888888888777777778888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 127 QNDKETAEKAFLELKKTKIDPD----------------WISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
.|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888887753 222 256777777788888888888888877765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-07 Score=77.17 Aligned_cols=256 Identities=10% Similarity=0.034 Sum_probs=134.7
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM-E-LPEKA 168 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a 168 (415)
..+..++|+++++.+....|.+..+|+.--.++...+ .+++++.+++.+.... +-+..+|+.-..++.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444457777777777777777777777777777777 4777777777777664 44556666666666655 5 67777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHHcccccChhhHHHHHHHHHhcCC------
Q 014978 169 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD--------EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE------ 234 (415)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 234 (415)
+++++.+.+.. +.|..+|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 77777777653 345666665555544444444 666666666665433 44455555544444443
Q ss_pred -hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH--HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 014978 235 -FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM--AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 311 (415)
Q Consensus 235 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 311 (415)
++++.+.+++..... +-|...|+.+-..+.+.|+... ...++ ...+. .+ +. .......+
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~----~~-~~---------~~~~~~~~ 284 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTAS----KL-NP---------DIETVEAF 284 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC---------------------------
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccc----cc-cc---------cchhHHHH
Confidence 334444444444332 2233344433333333322100 00000 00000 00 00 01122222
Q ss_pred HHHhHhcc---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCHHHHHHHHH
Q 014978 312 FKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLR 368 (415)
Q Consensus 312 ~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 368 (415)
...+.... ..-.+++..+..++..|...|+.++|.++++.+. +.+|....-|+-.++
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 22222210 0114566777788888888888888888888876 445555555655544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-09 Score=77.46 Aligned_cols=110 Identities=7% Similarity=-0.006 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
...+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+..|.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3456666677777777777777777776654 345566666777777777777777777776666666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLT 156 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 156 (415)
...|++++|.+.|++..+.. |.+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 77777777777777777653 33444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-07 Score=77.81 Aligned_cols=164 Identities=10% Similarity=-0.042 Sum_probs=101.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHccc-ccChh----hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC-----chHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSLFA-KMNDA----EYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-----RVPNIL 260 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 260 (415)
+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+.....+. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 11111 2223455555566777777777777653222111 146777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh----C-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc--CCCCC-HHHHHH
Q 014978 261 LAAYINRNQLEMAESFYNRLVT----K-GIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPD-HRLITA 331 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~----~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~-~~~~~~ 331 (415)
...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..++++++... +..+. ...+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 1111 123677778888888888888888888776321 11122 567778
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHHH
Q 014978 332 AYNKLEEQGD-IDGAEHLLVTLRN 354 (415)
Q Consensus 332 l~~~~~~~g~-~~~a~~~~~~~~~ 354 (415)
+..++.+.|+ +++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-08 Score=71.65 Aligned_cols=109 Identities=10% Similarity=-0.028 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+......|.+.|++++|.+.|++.++... .+...|..+..+|.+.|++++|+..++++++. -+.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHHH
Confidence 455566677777777777777777776532 25667777777777888888888888877762 23456677777778
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
+...|++++|...|++..+..|.+..++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 888888888888888888877777776666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-08 Score=78.85 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 014978 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKMELP--EK 167 (415)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~--~~ 167 (415)
...|++++|...++...+..|.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777888888887776667777788888888888888888888888877663 3456667777777 6677777 88
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 168 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
|...++++.+.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888877663 3456667777777888888888888888877753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=94.23 Aligned_cols=156 Identities=8% Similarity=-0.040 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHH
Q 014978 26 LQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 104 (415)
Q Consensus 26 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (415)
+++++|+..|+......| +...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHH---
Confidence 344555555555444333 45667777777888888888888888777653 332100 0000000
Q ss_pred HHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 105 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
. .+....+|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+.. +.+.
T Consensus 191 -~---~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 191 -A---QALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp -H---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred -H---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 00013344455555555555555555555554442 2344445555555555555555555555554442 2234
Q ss_pred HHHHHHHHHHHcCCChHHH
Q 014978 185 VAYSSLLSLYTNMGYKDEV 203 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a 203 (415)
..+..+..++...|+.+++
T Consensus 265 ~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-08 Score=76.79 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..|.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555432 22344444455555555555555555555544444445555555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 014978 127 QNDKETAEKAFLELKKT 143 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~ 143 (415)
.|++++|...+++..+.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=80.88 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=77.0
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHh------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVV------TYNLWLAACASQNDKETAEKAFLELKKTKID-PD----WISYSTL 155 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 155 (415)
+..+...|++++|..++++..+..+.+.. .+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44455566666666666665543211111 2223445555555666666666666543211 11 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc----cC-hhhHHH
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR-----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MN-DAEYTC 224 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-~~~~~~ 224 (415)
..+|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|+..+++..+.... +. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666555421 1011 1224555555555666666666655555443111 11 234455
Q ss_pred HHHHHHhcCC-hHHHHHHHHHH
Q 014978 225 VISSLVKLGE-FEKAENIYDEW 245 (415)
Q Consensus 225 l~~~~~~~g~-~~~a~~~~~~~ 245 (415)
+..++...|+ +++|...+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555553 35555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-08 Score=84.83 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=111.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 355667777777777888888888887777663 3366677777777778888888888887777653 34566677777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 271 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 271 (415)
.++...|++++|...|++..+..+. +...+...+....+. ..+. .+........+.+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 7777888888888888777665432 111111111111111 1111 1111222223334444333322 2 257777
Q ss_pred HHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhc-CCHHHHHHHHHHhHh
Q 014978 272 MAESFYNRLVTKGIKPCYT-TWELLTWGYLKK-GQMEKVLECFKKAIG 317 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 317 (415)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766654 34332 222332333333 556677777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-09 Score=82.24 Aligned_cols=120 Identities=10% Similarity=0.070 Sum_probs=83.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCc--Cc
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-YISNGQL--DK 98 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 98 (415)
...|++++|+..|+.+....| ++.+|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777777666555 55677777777778888888888888777654 2345566666666 6677777 77
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 99 VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
|...|++..+..|.+...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777666667777777777777778888888777777766
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-08 Score=74.86 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 195 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (415)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44555555555566666666555555442 2344555555555556666666666665555542 334455555555666
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhH--HHHHHHHHhcCChHHHHHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEY--TCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
..|++++|...++++.+..+. +...+ ...+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666665554322 22222 22222344556666666665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=84.49 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHH
Q 014978 147 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 226 (415)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (415)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+..+. +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356678889999999999999999999999873 447888999999999999999999999999886433 566888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 306 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 306 (415)
.++...|++++|...|+...+.++. +...+...+....+. ..+.. +.........++......+ ..+ ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999998775422 221222222222221 11122 2222223233344444433 333 368999
Q ss_pred HHHHHHHHhHhcccCCCCCHH-HHHHHHHHHHHc-CChhHHHHHHHHHHHc
Q 014978 307 KVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQ-GDIDGAEHLLVTLRNA 355 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 355 (415)
+|++.++.+.+ ..|+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999998876 455544 334444444444 6788999999887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-08 Score=78.80 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 014978 152 YSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 152 ~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
+..+...+...|++++|.+.+++
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=74.81 Aligned_cols=110 Identities=12% Similarity=-0.109 Sum_probs=68.9
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
.|+++....|.+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444444455566666666667777777777776666553 3455566666666667777777777776666553 3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.+...+..+..++...|++++|...|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666666666777777777777666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-07 Score=68.18 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++... .+.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 455566666677777777777777766542 124556667777777777777777777777662 2345666777777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
.+...|++++|...++++.+..+.+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 777777777777777777777776666666666655543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=76.46 Aligned_cols=101 Identities=10% Similarity=-0.095 Sum_probs=65.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 4455566666666666777777777776666653 3455566666666666777777777776666653 3345566666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666667777777776666664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-08 Score=70.83 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
.+|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+.+..++..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233344444444445555555555555444443444444444444444
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 014978 126 SQNDKETAEKAFLELKKT 143 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~ 143 (415)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-06 Score=71.29 Aligned_cols=251 Identities=10% Similarity=0.060 Sum_probs=137.6
Q ss_pred HhcCCcC-cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014978 91 ISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLY 159 (415)
Q Consensus 91 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (415)
.+.|.++ +|+++++.+....|.+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4466655 67888888877777777777766555544443 456666666666553 34555666555555
Q ss_pred HhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 160 IKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 160 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
.+.+ .+++++.+++.+.+.. +-|..+|+.-.-++...|. ++++++.++++++..+. |...|+.....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 5555 3566666666666653 3455566655555555555 36666666666665433 4445554444433331100
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-----------CCH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-----------GQM 305 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~ 305 (415)
.+ ++ ..-...+.++++.+.+...+...+ -|...|+.+-..+.+. +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 000001335556666665555321 1444454443333333 346
Q ss_pred HHHHHHHHHhHhcccCCCCCH-HHHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 306 EKVLECFKKAIGSVRKWVPDH-RLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
+++++.++++.+ ..|+. ..+..++ .+....|..+++...+.++.+.+|....-|..+...+
T Consensus 255 ~~el~~~~elle----~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 255 QSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 778888888877 34443 2222221 1122356778888899999988888766676665544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-07 Score=77.80 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=101.4
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--H
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV------VTYNLWLAACASQNDKETAEKAFLELKKTKI---DPD--W 149 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~ 149 (415)
..+...+..+...|++++|.+.+.+..+..+... ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455566666777777777777776655422222 2234455666677777777777777664321 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-----C
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKN-----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----N 218 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 218 (415)
.+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..+++..+..... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777777777777777777777776521 00111 1466777777777777777777777766542111 1
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 014978 219 DAEYTCVISSLVKLGEFEKA-ENIYDEWE 246 (415)
Q Consensus 219 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 246 (415)
..+|..+..++...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34566777777777777777 66566544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-08 Score=71.29 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
.+..+..++...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333444433333333321 1223333333333444444444444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-09 Score=78.44 Aligned_cols=99 Identities=8% Similarity=-0.083 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
+...+..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|+..|++.....|.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34455555566666666666666666665543 23445555555566666666666666666555555555566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 014978 124 CASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-08 Score=70.81 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..++++++. .+.+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHH
Confidence 44566667777777777777777777776432 25567777777777788888888888887762 234567777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 014978 334 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 375 (415)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (415)
.++...|++++|...|++..+..+.+...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788888888888888888877777666777777777766553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-09 Score=89.50 Aligned_cols=151 Identities=9% Similarity=0.004 Sum_probs=95.4
Q ss_pred cCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHH
Q 014978 93 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--------------WISYSTLTSL 158 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~l~~~ 158 (415)
.+++++|++.++......+.+...+..+...+.+.|++++|...|++..+...... ...|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555543332344567788888888888888888888888887631111 3566666777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..|+++.+..+. +...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766653 335566666666777777777777777766664332 444566666666666666665
Q ss_pred -HHHHHHH
Q 014978 239 -ENIYDEW 245 (415)
Q Consensus 239 -~~~~~~~ 245 (415)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-08 Score=71.91 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|.+.+++..+..+.+...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344455555555555555555555555432 2233444444455555555555555555544444444445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555554442 223334444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=7e-07 Score=75.65 Aligned_cols=172 Identities=10% Similarity=-0.019 Sum_probs=130.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-----WISYSTLTSLYIKMELPEKAATTLKEMEKRTC---RK 182 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~ 182 (415)
+.....+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44567777788899999999999999998887642211 12345577778889999999999999875321 12
Q ss_pred C--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcc-cccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCC--
Q 014978 183 N--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-AKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-- 252 (415)
Q Consensus 183 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 252 (415)
. ..+|+.+...|...|++++|+..+++..+.. ..|+ ..++..+...|...|++++|...+++..+.....
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 4578899999999999999999999987431 1122 2478889999999999999999999876542111
Q ss_pred ---CCchHHHHHHHHHhcCcHHHH-HHHHHHHHh
Q 014978 253 ---DPRVPNILLAAYINRNQLEMA-ESFYNRLVT 282 (415)
Q Consensus 253 ---~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 282 (415)
-..++..+..+|...|+.++| ...+++...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145778899999999999999 777887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-08 Score=81.33 Aligned_cols=127 Identities=14% Similarity=-0.036 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHc
Q 014978 119 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTN 196 (415)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 196 (415)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34445555555555555555554432 322244444445555555555555555333221 110 1234445555555
Q ss_pred CCChHHHHHHHHHHHHcccccC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 197 MGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555543221122 112333444455555555555555555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-07 Score=67.32 Aligned_cols=118 Identities=11% Similarity=-0.037 Sum_probs=77.2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++... .+.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHH
Confidence 345555666666666666666666666542 124556666666777777777777777777662 2334566667777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
.+...|++++|...+++..+..+.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777666666777777777666653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=75.08 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcCCC
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 199 (415)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456677777744444322 1234456666677777777777777777666541 111 123445566666677777
Q ss_pred hHHHHHHHHHHHHccc-cc-C----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFA-KM-N----DAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~-~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
+++|...+++..+... .+ + ...+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777666554310 11 1 2235555556666666666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-06 Score=73.63 Aligned_cols=162 Identities=7% Similarity=-0.019 Sum_probs=84.0
Q ss_pred HhhhhH-HHHHHHHhcCcCCCC-cchHHHHHHHHHhcCc----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 24 QALQTR-ARENFFENLPDKMRG-PDTCSALLHSYVQNKK----------SAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 24 ~~g~~~-~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
+.|.++ +|+.+++.+....|+ ..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344444 566666666665553 3344433333322222 455666666665543 334555555555555
Q ss_pred hcCC--cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 014978 92 SNGQ--LDKVPQMLQELKKNTSPDVVTYNLWLAACASQND-KETAEKAFLELKKTKIDPDWISYSTLTSLYIKM------ 162 (415)
Q Consensus 92 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------ 162 (415)
..++ +++++.+++++.+..+.|..+|+.-.-++...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccc
Confidence 5553 4566666666665566666666666655555555 356666666666553 34455555544444433
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCHHHHH
Q 014978 163 --------ELPEKAATTLKEMEKRTCRKNRVAYS 188 (415)
Q Consensus 163 --------~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (415)
+.++++++.+....... |-|...|+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~ 231 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWF 231 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 23445555555555442 33444444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=75.11 Aligned_cols=109 Identities=12% Similarity=-0.061 Sum_probs=77.3
Q ss_pred HHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC
Q 014978 34 FFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 112 (415)
Q Consensus 34 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (415)
.|+.+....| +...+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|+..|++.....|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555555444 44566667777777888888888888777654 345666777777777788888888888877776677
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
+...+..+..++...|++++|...|++..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777888888888888888888777655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8.3e-08 Score=71.58 Aligned_cols=101 Identities=12% Similarity=-0.070 Sum_probs=63.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
|.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3344555556666666666666666666666553 3455566666666666666666666666666553 3345556666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=81.28 Aligned_cols=142 Identities=8% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----------------ccH
Q 014978 21 AQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPY 83 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~ 83 (415)
.....|+++.|.+.|+......+ ....+..+...+...|++++|++.|++..+.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 34456667777666664443322 34567777788888888888888888887643 1122 334
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
..+..++...|++++|+..+++..+..+.+..++..+..++...|++++|...|++..+.. +.+...+..+..++...+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 4444444455555555555554444444444444445555555555555555554444432 223333444444443333
Q ss_pred C
Q 014978 164 L 164 (415)
Q Consensus 164 ~ 164 (415)
+
T Consensus 171 ~ 171 (198)
T 2fbn_A 171 E 171 (198)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=80.05 Aligned_cols=145 Identities=14% Similarity=-0.057 Sum_probs=69.5
Q ss_pred HHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHH
Q 014978 89 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----------------ISY 152 (415)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~ 152 (415)
.....|+++++.+.++.-....+.....+..+...+...|++++|...|++..+.. +.+. ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 33444555666555543222223344556667777777777777777777776642 1111 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+..+. +...+..+..++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHH
Confidence 555555555555555555555555442 234444555555555555555555555555443221 233344444444333
Q ss_pred CChH
Q 014978 233 GEFE 236 (415)
Q Consensus 233 g~~~ 236 (415)
++..
T Consensus 170 ~~~~ 173 (198)
T 2fbn_A 170 KEAR 173 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-07 Score=66.02 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=60.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445556666666666666666666666553 3345566666666666666666666666666553 3345556666666
Q ss_pred HHcCCChHHHHHHHHHHHHc
Q 014978 194 YTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~ 213 (415)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.5e-07 Score=64.70 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 196 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (415)
+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333344444444444444444443331 2233333444444444444444444444443331 1223333444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 014978 197 MGYKDEVLRIWKKMMS 212 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~ 212 (415)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-07 Score=63.45 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+. .+.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 45556666667777777777777766542 124566666777777777777777777777662 23356667777777
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
+...|++++|...+++..+.++.+...+..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777776666655555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-07 Score=64.68 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+..+...+.+.|++++|...|++.++... .+...|..+..++.+.|++++|+..++++++. .+.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 344455555566666666666666555421 24455666666666666666666666666651 22345556666666
Q ss_pred HHHcCChhHHHHHHHHHHHcC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~ 356 (415)
+...|++++|...|+++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 666666666666666666655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=67.24 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHH
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKN----RVAYSSL 190 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 190 (415)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444432 22333444444444444444444444444433210 000 1234444
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555555554444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-07 Score=64.31 Aligned_cols=97 Identities=9% Similarity=-0.032 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLL 191 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 191 (415)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344444444444445555555444444432 2233344444444444455555554444444431 22 234444444
Q ss_pred HHHHcC-CChHHHHHHHHHHHH
Q 014978 192 SLYTNM-GYKDEVLRIWKKMMS 212 (415)
Q Consensus 192 ~~~~~~-~~~~~a~~~~~~~~~ 212 (415)
.++... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 455555544444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-07 Score=65.29 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCC--CHhHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWL 121 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 121 (415)
+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455555555556666666666665555543 223344445555555555555555555555544444 455555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 014978 122 AACASQ-NDKETAEKAFLELKKT 143 (415)
Q Consensus 122 ~~~~~~-~~~~~a~~~~~~~~~~ 143 (415)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-06 Score=64.16 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 190 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (415)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3455566666666666666666666666666553 3345566666666666666666666666666543 3345566666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=64.79 Aligned_cols=113 Identities=14% Similarity=-0.039 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 253 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++++.. .+.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 4455667777788888888888888888775 344 567777888888888888888888888772 2345677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
+..+..++...|++++|...|++..+..+.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888999999998888888877777666655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=63.79 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC------hhhHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN------DAEYTC 224 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 224 (415)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++..+... ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455555555555555555555555542 23444555555555555555555555555554322110 113444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 014978 225 VISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
+..++...|++++|...|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-06 Score=66.72 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=66.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666777777777777777766653 3355666667777777777777777777766653 334566666677
Q ss_pred HHHcCCChHHHHHHHHHHHHcc
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7777777777777777766643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=68.29 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC-------HhHHHHH
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD-------VVTYNLW 120 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l 120 (415)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444444444444444444432 2223333344444444444444444444433321111 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 014978 121 LAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
..++...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.5e-07 Score=67.33 Aligned_cols=112 Identities=8% Similarity=-0.052 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC----PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNL 119 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (415)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+..++...|++++|+..+++..+..+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 55677778888888888888888888887754 54 5667777788888888888888888877766777888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
+..++...|++++|...|++..+.. +.+...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 8888888888888888888888763 3344444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-06 Score=74.87 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=118.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 014978 121 LAACASQNDKETAEKAFLELKKTKIDPDW----------------ISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKN 183 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 183 (415)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45667888888888888888876322110 1356677788888888888888877654211 111
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHcc----cccC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-
Q 014978 184 R----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLF----AKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD- 253 (415)
Q Consensus 184 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 253 (415)
. .+.+.+...+...|+++.+..+++...... ..+. ..++..+...+...|++++|..+++.+...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 123333344455677788877777765431 1111 23566677777777888888777777654321111
Q ss_pred ----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC--CC-CC-C--HhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 254 ----PRVPNILLAAYINRNQLEMAESFYNRLVTK--GI-KP-C--YTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 254 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..++..++..|...|++++|..++++.... .+ .| . ...+..+...+...+++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 235666677777777777777777766531 11 11 1 12444555556667777777777777655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-07 Score=65.77 Aligned_cols=92 Identities=9% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCC---HhHHHHHHHHH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCP---LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD---VVTYNLWLAAC 124 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 124 (415)
+...+...|++++|.+.|+...+.. +.+. ..+..+..++...|++++|...|+++.+..|.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3344444444444444444444432 1111 233344444444455555555544444433333 34444455555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 014978 125 ASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~ 143 (415)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=77.58 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc------------------chHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDKMRGP------------------DTCSALLHSYVQNKKSAEAEALMEKMSECG- 75 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~- 75 (415)
.+..+-.+.+.|++++|++.|..+.+..|+. .++..++..|...|++++|.+.+..+...-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556667889999999999999877764321 136678888888899999988888765421
Q ss_pred CCCCc----ccHHHHHHHHHhcCCcCcHHHHHHHHhhc------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 014978 76 FLKCP----LPYNHMLNLYISNGQLDKVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-- 143 (415)
Q Consensus 76 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 143 (415)
-.++. .+.+.+...+...|++++|..++...... ...-..++..++..+...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 01111 12222333444567788888887775432 1222456777888888888888888888776533
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 144 KI---DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR----TCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 144 g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+. +....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 112346777788888888888888888776532 11111 23455666677777888888777776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-07 Score=65.19 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHH
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC--RKN----RVAYS 188 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 188 (415)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555555555555555555555442 33444555555555555555555555555544311 011 34455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+..++...|++++|.+.|+++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-08 Score=88.14 Aligned_cols=139 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred hhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----------------ccHHHHHHH
Q 014978 27 QTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPYNHMLNL 89 (415)
Q Consensus 27 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~ 89 (415)
++++|+..|+......| ....|..+...+.+.|++++|+..|++..+.. |+. ..|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544443333 34567777788888888888888888877643 322 344444444
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 168 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 168 (415)
+.+.|++++|+..+++..+..|.+..+|..+..++...|++++|...|++..+.. +.+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444444444444455555555555555554444432 22233444444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=9.1e-07 Score=65.23 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 81 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
..|..+...+...|++++|...|++.....|.+...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3444444555555555555555555544444455555555555555555555555555555543 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014978 161 KMELPEKAATTLKEMEK 177 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~ 177 (415)
..|++++|...|++..+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-07 Score=64.98 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=36.6
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 167 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 167 (415)
..+.+.|++++|+..|++..+..|.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444443333444444444444444444444444444444332 2223334444444444444444
Q ss_pred HHHHHHHHH
Q 014978 168 AATTLKEME 176 (415)
Q Consensus 168 a~~~~~~~~ 176 (415)
|...+++..
T Consensus 104 A~~~~~~al 112 (121)
T 1hxi_A 104 ALASLRAWL 112 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-07 Score=65.90 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=74.9
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..|.+...+..+..++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566677778888888888888887764 3456677777788888888888888888877777777888888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 014978 126 SQNDKETAEKAFLELKKT 143 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~ 143 (415)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-06 Score=64.58 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHH
Q 014978 148 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 227 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (415)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677788888888999999999998888764 446778888888888889999999999888886533 5667888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcc
Q 014978 228 SLVKLGEFEKAENIYDEWESIS 249 (415)
Q Consensus 228 ~~~~~g~~~~a~~~~~~~~~~~ 249 (415)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888889999888888887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-06 Score=62.09 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDV---VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLY 159 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~ 159 (415)
+...+...|++++|...|+.+.+..|.+. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444555555555555555544433333 344455555555555555555555555442 112 33444455555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 014978 160 IKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 160 ~~~~~~~~a~~~~~~~~~~ 178 (415)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=83.99 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=75.3
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 173 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 173 (415)
+++++|++.|+......+.....|..+...+.+.|++++|...|++.++.. |+...+ ..+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----
Confidence 345555555543332223455567777777888888888888888777642 221000 000000
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 014978 174 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 253 (415)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 253 (415)
+.. +.....|..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|...|+++.+.. +.+
T Consensus 311 ~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~ 384 (457)
T 1kt0_A 311 ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN 384 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 000 001234444555555555555555555555543322 33444555555555555555555555555443 223
Q ss_pred CchHHHHHHHHHhcCcHHHHH
Q 014978 254 PRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 254 ~~~~~~l~~~~~~~g~~~~a~ 274 (415)
...+..+..++.+.++.+++.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=85.60 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 014978 47 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 126 (415)
Q Consensus 47 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (415)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++..+..|.+..+|..+..++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444556677888888888888888764 33567788888888888888888888888887777788888888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014978 127 QNDKETAEKAFLELKKTKIDPDWISYSTLTSL--YIKMELPEKAATTLK 173 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 173 (415)
.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998888763 3344455555555 777888888888887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-06 Score=62.80 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKID-PD----WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RV 185 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 185 (415)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 124555555566666666666666555432100 01 23
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHccccc-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 186 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----NDAEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 186 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
.+..+...+...|++++|...+++..+..... ....+..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455555555666666666555554331100 11234444444555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=7e-06 Score=62.10 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHccccc-C----h
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-N----D 219 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~ 219 (415)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+..... + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777666543100 11 1345556666666677777777666655432110 1 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 014978 220 AEYTCVISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 220 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
..+..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 234444555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-05 Score=70.43 Aligned_cols=171 Identities=7% Similarity=-0.002 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE----------FEKAENIYDEWESISGTGDPRVPNILLAAYINRN- 268 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 268 (415)
.++|++.++++....+. +...|+.-..++...|+ ++++...++.+.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 36678888888775433 44456655555555665 788888888888775 337777877777777778
Q ss_pred -cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHc-------
Q 014978 269 -QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ------- 339 (415)
Q Consensus 269 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 339 (415)
+++++...++++.+...+ +...|+.-...+.+.| .++++++.+.++++ ..+-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccc
Confidence 668888888888886533 7778888777777888 78888888888877 2345677777777766653
Q ss_pred -------CChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 340 -------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 340 -------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
+.++++.+.+.++....|.+..+|+.+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 5578999999999999999999999988888887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-06 Score=62.09 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=44.3
Q ss_pred cCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014978 93 NGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 169 (415)
Q Consensus 93 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 169 (415)
.|++++|+..|++..+. .|.+..++..+..++...|++++|...|++..+.. +.+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555666555543 23344455555555556666666666665555543 333445555555555556666666
Q ss_pred HHHHHHHhc
Q 014978 170 TTLKEMEKR 178 (415)
Q Consensus 170 ~~~~~~~~~ 178 (415)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=9.5e-07 Score=80.21 Aligned_cols=122 Identities=7% Similarity=-0.049 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 014978 85 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 164 (415)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (415)
.+...+.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|...+++..+.. +.+...+..+..+|.+.|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344456678999999999999888778889999999999999999999999999998874 4567788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHcCCChHHHHHHHH
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSL--YTNMGYKDEVLRIWK 208 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 208 (415)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988763 3344455555555 777889999999888
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=61.23 Aligned_cols=98 Identities=17% Similarity=0.056 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKT--------K---------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
..+......+.+.|++++|...|.+.++. . -+.+...|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 0 012334666777777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 178 RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
.. +.+...|..+..++...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 445666777777777777777777777777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=74.25 Aligned_cols=136 Identities=10% Similarity=0.000 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 48 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 48 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
|..+...+.+.|++++|++.|++..+.- +... . ........+..+.+..+|..+..++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~-------~~~~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------A-------AAEDADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------H-------HSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------c-------ccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666667777777777776665420 0000 0 0000111112233455666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 128 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
|++++|+..+++.++.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...++.+++.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666553 3345566666666666666666666666666552 234555555555555555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-06 Score=63.87 Aligned_cols=115 Identities=14% Similarity=0.029 Sum_probs=53.6
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 125 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (415)
..+......+.+.|++++|+..|.+....- +. ........... +..+ .+.+...|..+..++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~----------~~~~~~~~~~~--~~~~---~~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT----------LILREKPGEPE--WVEL---DRKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHTSCTTSHH--HHHH---HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------hcccCCCCHHH--HHHH---HHHHHHHHHHHHHHHH
Confidence 445566667777777777777777665530 00 00000000000 0000 1223344555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 126 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 75 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5555555555555555442 233444555555555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=60.80 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHHhCCC-CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhH
Q 014978 267 RNQLEMAESFYNRLVTKGI-KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 344 (415)
Q Consensus 267 ~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 344 (415)
.|++++|...|++.++.+. .| +...+..+...|...|++++|+..|+++++. .+-+...+..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4666777777777766431 12 3456667777777777777777777777762 23346667777777777777777
Q ss_pred HHHHHHHHHHcCCCCHH
Q 014978 345 AEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 345 a~~~~~~~~~~~~~~~~ 361 (415)
|...+++.....+.++.
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 77777777776666543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.31 E-value=9.9e-06 Score=70.83 Aligned_cols=97 Identities=13% Similarity=-0.024 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTK---------------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+..+...+.+.|++++|+..|++.++.- -+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777778888888888888888777520 01122344444444455555555555555444432
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 180 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+.+...|..+..+|...|++++|+..|++..+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334444444444444555555554444444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=74.32 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-Y 194 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 194 (415)
.|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67777778888888888888888877663 3456677778888888888888888888776642 2234444444444 2
Q ss_pred HcCCChHHHHHHHHHHHHcc
Q 014978 195 TNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~ 214 (415)
...+..+.+...|..|....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 33456677777777776643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.3e-05 Score=68.47 Aligned_cols=170 Identities=6% Similarity=-0.056 Sum_probs=110.0
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--L 164 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~ 164 (415)
++|++.++++....|.+..+|+.-..++...++ +++++..++.+.+.. +-+..+|+.-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 456677777666666666677766666666665 677777777777664 445566666666666667 5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc-----------
Q 014978 165 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL----------- 232 (415)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 232 (415)
++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++++..+. +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777664 346666766666666666 677777777777665443 555566555554442
Q ss_pred ---CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcH
Q 014978 233 ---GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQL 270 (415)
Q Consensus 233 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (415)
+.++++.+.++.+.... +-+...|+.+-..+.+.++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 44677777777777665 33677777776666665553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.6e-06 Score=71.54 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014978 114 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 193 (415)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (415)
...+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445777778888888888888888887765 344321 112223333322211 1256677777
Q ss_pred HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH-HHhcCcHHH
Q 014978 194 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA-YINRNQLEM 272 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 272 (415)
+.+.|++++|+..+++.++..+. +...|..+..++...|++++|...|+++.+.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887775432 55677777778888888888888888776653 2244455555544 233456677
Q ss_pred HHHHHHHHHhC
Q 014978 273 AESFYNRLVTK 283 (415)
Q Consensus 273 a~~~~~~~~~~ 283 (415)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-05 Score=57.39 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 014978 117 YNLWLAACASQNDKETAEKAFLELKKTKID-P-----D-----WISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC 180 (415)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 180 (415)
+......+.+.|++++|+..|++.++.... | + ...|..+..++.+.|++++|+..+++..+. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444445555556666666666655544211 0 1 114444555555555555555555544442 00
Q ss_pred CC-CHHHH----HHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 181 RK-NRVAY----SSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 181 ~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.| +...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12 22334 4444444455555555555544444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-05 Score=58.44 Aligned_cols=63 Identities=8% Similarity=-0.099 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISY----STLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
..|..+..++.+.|++++|+..+++.++. . +.+...| .....++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888765 3 3344577 78888888999999999998888753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-05 Score=51.23 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
...+..+...+...|++++|+..++++++. .+.+...+..+..++...|++++|...+++..+..+.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456677777888888888888888888772 23456777888888888888888888888888888777777777777
Q ss_pred HHHhcC
Q 014978 369 TYAKAG 374 (415)
Q Consensus 369 ~~~~~g 374 (415)
.+...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.4e-05 Score=55.30 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=7.1
Q ss_pred cHHHHHHHHHHHHhcC
Q 014978 60 KSAEAEALMEKMSECG 75 (415)
Q Consensus 60 ~~~~a~~~~~~~~~~~ 75 (415)
++++|.+.|++..+.|
T Consensus 10 d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 10 DLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC
Confidence 3444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.7e-05 Score=53.92 Aligned_cols=80 Identities=6% Similarity=-0.050 Sum_probs=47.1
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+.|++.|++..+..|.+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666555555556666666666666666666666666665553 3344455556666666666666666666554
Q ss_pred h
Q 014978 177 K 177 (415)
Q Consensus 177 ~ 177 (415)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=52.71 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 014978 129 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVL 204 (415)
Q Consensus 129 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 204 (415)
++++|..+|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444443 12211 3333444444444444444444432 33333444444443 34444444
Q ss_pred HHHHHHHH
Q 014978 205 RIWKKMMS 212 (415)
Q Consensus 205 ~~~~~~~~ 212 (415)
++|++..+
T Consensus 82 ~~~~~Aa~ 89 (138)
T 1klx_A 82 QYYSKACG 89 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.6e-05 Score=52.55 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=55.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC------HH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS------TE 361 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 361 (415)
+...+..+...+...|++++|+..|+++++. .+.+...+..+..++...|++++|...++++.+..+.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3455666666677777777777777777662 23355666667777777777777777777777766665 45
Q ss_pred HHHHHHHHHHhcCCC
Q 014978 362 IYNSLLRTYAKAGKM 376 (415)
Q Consensus 362 ~~~~l~~~~~~~g~~ 376 (415)
.+..+..++...|+.
T Consensus 80 ~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 80 LQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhH
Confidence 555556666555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.6e-05 Score=53.13 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
+.|...|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677788777764 4567788888888889999999999998888764 445677888888888889999999888888
Q ss_pred HHcc
Q 014978 211 MSLF 214 (415)
Q Consensus 211 ~~~~ 214 (415)
.+..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=59.05 Aligned_cols=105 Identities=11% Similarity=-0.015 Sum_probs=57.2
Q ss_pred HHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
.+.+.+++|++.++.+....| ++..|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 445556666666665555544 45555555555555554432222111 1345666
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQ-----------NDKETAEKAFLELKKTKIDPDWISYST 154 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~ 154 (415)
.|++..+..|.+..+|..+..+|... |++++|++.|++.++. .|+...|..
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66665555555566666666666554 3677777777777665 455444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=55.85 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=19.1
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
+...|++++|++.|++..+..|.+...+..+..++...|++++|...+++..
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=70.90 Aligned_cols=122 Identities=11% Similarity=-0.024 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHhCC---CC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CC-CHHHHHHHH
Q 014978 126 SQNDKETAEKAFLELKKTK---ID---P-DWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC-RK-NRVAYSSLL 191 (415)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~g---~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 191 (415)
..|++++|+.++++..+.. +. | ...+++.|..+|...|++++|..++++.... |. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566666666665554320 11 1 2235666666666666666666666655431 10 11 133466666
Q ss_pred HHHHcCCChHHHHHHHHHHHHc-----ccc-cC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 192 SLYTNMGYKDEVLRIWKKMMSL-----FAK-MN-DAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
..|...|++++|+.++++..+. |.. |+ ..+...+..++...+.+++|+.++..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655432 221 11 12344555556666677777777776655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.4e-05 Score=67.13 Aligned_cols=128 Identities=7% Similarity=0.005 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKR---TCRK----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAE 221 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~ 221 (415)
+..+...|++++|+.++++..+. -+.| ...+++.+..+|...|++++|+.++++.++. |. .|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999999887653 1222 2457899999999999999999999987653 22 122 336
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh---ccCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWES---ISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK 283 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 283 (415)
++.|...|...|++++|..++++..+ .-+-|+ ..+.+.+..++...+.+++|..++..+.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998654 112222 334567778888899999999999998763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=6.5e-05 Score=50.36 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22333444444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-05 Score=57.24 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=54.0
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+.+++|++.++...+..|.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 345555666666555555666666666666555554 347777777777663 334556777777776654
Q ss_pred -----------CHHHHHHHHHHHHhcCCCCCHHHH
Q 014978 164 -----------LPEKAATTLKEMEKRTCRKNRVAY 187 (415)
Q Consensus 164 -----------~~~~a~~~~~~~~~~~~~~~~~~~ 187 (415)
++++|++.|++..+. .|+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 566666666666554 3444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00033 Score=48.04 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 149 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444445555555555555444432 22333444444555555555555555544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0011 Score=56.50 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344455555554555566666666666555543 4555555555555555666666666655555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00029 Score=48.31 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=46.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
|.+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566677777777777777777777777777664 33455677777777777777777777777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0012 Score=56.44 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCcchHHHHHHHHHh--c---CcHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHh---cCCcC-cH----HHHHHHHhh
Q 014978 43 RGPDTCSALLHSYVQ--N---KKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYIS---NGQLD-KV----PQMLQELKK 108 (415)
Q Consensus 43 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~-~a----~~~~~~~~~ 108 (415)
.++.+|...+++... . .+..+|..+|++..+.. |+ ...|..+..++.. .+... .. ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 377888888776542 2 34578999999999875 54 3455544444321 11111 11 112222211
Q ss_pred --cCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 014978 109 --NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 186 (415)
Q Consensus 109 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 186 (415)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 257888899999888888899999999999999985 78888888899999999999999999999886 577777
Q ss_pred HH
Q 014978 187 YS 188 (415)
Q Consensus 187 ~~ 188 (415)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0035 Score=42.50 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhcccCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.+.+.|++++|+..++++++. .+.+.. .+..+..++...|++++|...|+++.+..+.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 344455555555555555441 122334 445555555555555555555555555554433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.035 Score=45.53 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcccccC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CcHH
Q 014978 201 DEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKL-----GEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-NQLE 271 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 271 (415)
..|...+++.++ +.|+ ...|..+...|... |+.++|.+.|++..+.++..+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 566667777766 3444 44677888888774 88999999999888876444577788888888884 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHhHHH
Q 014978 272 MAESFYNRLVTKGIK--PCYTTWE 293 (415)
Q Consensus 272 ~a~~~~~~~~~~~~~--p~~~~~~ 293 (415)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999988887655 5544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=45.12 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-Ccc-hHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-GPD-TCSALLHSYVQNKKSAEAEALMEKMSECG 75 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 75 (415)
+..+..+.+.|++++|++.|+.+....| ++. .|..+..++...|++++|.+.|++..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667788889999999999998887766 456 88888889999999999999999988865
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0091 Score=41.03 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=51.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhHhccc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 288 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR----KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
+...+..+...+.+.|++..|...|+.+++... .-.+....+..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 344555667777777777777777777766311 0123456677777778888888888888888877777765543
Q ss_pred H
Q 014978 364 N 364 (415)
Q Consensus 364 ~ 364 (415)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0082 Score=58.43 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=93.7
Q ss_pred HHhhhhHHHHH-HHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHH
Q 014978 23 AQALQTRAREN-FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQ 101 (415)
Q Consensus 23 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (415)
...+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.- ..-+......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHH
Confidence 46788888877 654433 1223367777788888888888766321 112344566788888888
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 014978 102 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 181 (415)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 181 (415)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....|.
T Consensus 674 ~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 674 LLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 76443 4677888899999999999999888887743 23455555556666665555554444331
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 182 KNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
++....++.+.|++++|++++.+
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22223334445555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=57.66 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhhHHHHHHH
Q 014978 163 ELPEKAATTLKEMEKR---TCRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAEYTCVISS 228 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~ 228 (415)
|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.++++.++. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11111 234556666666666666666666655432 11 111 1245566666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 014978 229 LVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 229 ~~~~g~~~~a~~~~~~~~ 246 (415)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0042 Score=55.20 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----cc-ccC-hhhHHH
Q 014978 159 YIKMELPEKAATTLKEMEKRT---CRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FA-KMN-DAEYTC 224 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 224 (415)
+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++.+.. |. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666665321 1121 344666666666666666666666655432 11 111 224666
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 014978 225 VISSLVKLGEFEKAENIYDEWE 246 (415)
Q Consensus 225 l~~~~~~~g~~~~a~~~~~~~~ 246 (415)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666677666666666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.036 Score=45.45 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-CCh
Q 014978 130 KETAEKAFLELKKTKIDPD---WISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM-GYK 200 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 200 (415)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777776 455 45778888888884 88888888888888764212366677777777774 888
Q ss_pred HHHHHHHHHHHHcccc--cChhhH
Q 014978 201 DEVLRIWKKMMSLFAK--MNDAEY 222 (415)
Q Consensus 201 ~~a~~~~~~~~~~~~~--~~~~~~ 222 (415)
+++.+.+++.+...+. |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888886655 554333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=58.35 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHHHH
Q 014978 128 NDKETAEKAFLELKKT---KIDP----DWISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKN-RVAYSSLLSL 193 (415)
Q Consensus 128 ~~~~~a~~~~~~~~~~---g~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 193 (415)
|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6778888888776542 1112 2347788888888888888888888877642 2 1222 3458888888
Q ss_pred HHcCCChHHHHHHHHHHHHc
Q 014978 194 YTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~ 213 (415)
|...|++++|+.++++..+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 88888888888888877653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.016 Score=42.47 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHhHhcccCCCC--CHHHHHHHHHHHHHcCChh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQGDID 343 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 343 (415)
.+..+.+-|.+....+. ++..+...+..++++.+ +.++++.+++...+. . .| +...+..|..++.+.|+++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHccCHH
Confidence 34455666666665553 57777777778888877 566888888887772 2 23 3455566677788888888
Q ss_pred HHHHHHHHHHHcCCCCHHH
Q 014978 344 GAEHLLVTLRNAGHVSTEI 362 (415)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~ 362 (415)
+|++.++.+.+..|.+..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 8888888888888876433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0069 Score=40.59 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=25.1
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.++|..++++..+..|.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555444555555555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=56.76 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTK---IDPD----WISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRKN-RVAYSSL 190 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 190 (415)
.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++... | ..|+ ..+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 36788999999998887541 2222 347888999999999999999998887642 2 1122 4568889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 014978 191 LSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
...|...|++++|+.++++..+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.011 Score=39.68 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 014978 148 DWISYSTLTSLYIKMEL---PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 213 (415)
Q Consensus 148 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (415)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 355555555555442 223444444455555555555555555555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.027 Score=40.77 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHhcCcH------HHHHHHHHHHHhCCCCCCHh-H---HHHHHH---HHHhcCCHHHHHHHHHHhHhcc
Q 014978 253 DPRVPNILLAAYINRNQL------EMAESFYNRLVTKGIKPCYT-T---WELLTW---GYLKKGQMEKVLECFKKAIGSV 319 (415)
Q Consensus 253 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~-~---~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 319 (415)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |..+.- .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 344444445544444555 5666666666653 344321 1 111111 123347899999999999874
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 014978 320 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKA 373 (415)
Q Consensus 320 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (415)
+-.. ...|....+--.++|+...|.+++......++.|.....+.++-+--.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 2233 677777777778999999999999999999999998888888766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.084 Score=51.31 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 232 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (415)
..++..+.+.|.+++|.++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555566666666655442110 0122234456666666654332 2445566666666666
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 014978 233 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 312 (415)
Q Consensus 233 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 312 (415)
|+++.|.+.|..+.. |..+...+...|+.+...++-+.....|. ++.....|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665432 22333444445555544444444333321 222233344445555555544
Q ss_pred HH
Q 014978 313 KK 314 (415)
Q Consensus 313 ~~ 314 (415)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.029 Score=41.15 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
...+.+-|.+..+.| +++..+...+..++++.+ +.++++.+|++..+.+ .| ....+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555554 356666666666777766 4456777777766653 23 2344445566667777777777
Q ss_pred HHHHHHHHc
Q 014978 205 RIWKKMMSL 213 (415)
Q Consensus 205 ~~~~~~~~~ 213 (415)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.042 Score=37.59 Aligned_cols=62 Identities=10% Similarity=-0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTK------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+..+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444555555555555554443320 012233444444555555555555555544444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.052 Score=39.30 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=56.8
Q ss_pred CcchHHHHHHHHHhcCcH------HHHHHHHHHHHhcCCCCCcc-cHHHHHHH------HHhcCCcCcHHHHHHHHhhcC
Q 014978 44 GPDTCSALLHSYVQNKKS------AEAEALMEKMSECGFLKCPL-PYNHMLNL------YISNGQLDKVPQMLQELKKNT 110 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 110 (415)
|+++|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 667777777777666777 7777777776653 455421 11111111 122356666666666664432
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 111 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.-...|-..+..-.+.|++..|.+++...+..+
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2225556666666666666666666666666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.22 E-value=0.63 Score=45.18 Aligned_cols=272 Identities=13% Similarity=0.048 Sum_probs=139.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHH
Q 014978 122 AACASQNDKETAEKAFLELKKTKIDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTC-------RKNRVAYSSLLS 192 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 192 (415)
-+....|+.++++.++......+-..+. ..-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456677777777777665542101122 2233444555666666677777776654321 011122223333
Q ss_pred HHHcCCC-hHHHHHHHHHHHHcccccCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHH--HHHhc
Q 014978 193 LYTNMGY-KDEVLRIWKKMMSLFAKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA--AYINR 267 (415)
Q Consensus 193 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 267 (415)
++.-.|. -+++.+.+..+..... +.. ..-..+...+...|+.+....++..+.+.. +..+...++. ++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333343 2456666666554321 111 112233344556788887788887766532 2233333333 34467
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHH
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWE--LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 345 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 345 (415)
|+.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 88888888888877631 22222222 3345667788887777788888762 223334334444455567777777
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHhCCCCCCHHHH-HHHHHhcc
Q 014978 346 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP---LIIVERMQKDNVQMDAETQ-KVLKITSE 404 (415)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a---~~~~~~m~~~~~~p~~~t~-~~l~~~~~ 404 (415)
.++++.+.+.+-+....-..+.-+....|+.. ..++..+. -.+|..+- ..+.++..
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~---~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT---KDPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 77777666544322232333333444445442 44444443 23444443 34444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.17 E-value=3.8e-05 Score=67.00 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=163.0
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHH
Q 014978 44 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 123 (415)
Q Consensus 44 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (415)
.+..|+.|..+....+++.+|++.|- +. .|+..|..++.+..+.|.+++-+.++...++. ..+...=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 57899999999999999988887663 22 46778899999999999999999999887766 3344455688999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------------------CCCCC
Q 014978 124 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--------------------TCRKN 183 (415)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 183 (415)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+... .-..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998776554442 355555667777777777777776666543321 01236
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 014978 184 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 263 (415)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (415)
+.||..+-.+|...+++.-|--.--.++ ........++..|...|.+++-+.+++.-.... .....+|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 6788888888888888776644332222 122234446667778888888888887765432 3456677777777
Q ss_pred HHhcCcHHHHHHHHHHHHhC-CCC------CCHhHHHHHHHHHHhcCCHHHHH
Q 014978 264 YINRNQLEMAESFYNRLVTK-GIK------PCYTTWELLTWGYLKKGQMEKVL 309 (415)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 309 (415)
|++- ++++..+.++....+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7664 445544444433221 111 12345667777777777777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.12 Score=36.37 Aligned_cols=92 Identities=8% Similarity=0.000 Sum_probs=59.5
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHhHhcccCCCC--CHHHHHHHHHHHHHcC
Q 014978 266 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQG 340 (415)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g 340 (415)
....+..+.+-|......|. |+..+--.+.+++.+..+... ++.++..... . -.| ...-...|.-++.+.|
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~-~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--K-GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--T-SCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHHHhh
Confidence 33445555666665555443 566666677777777776655 7777777666 1 123 2234455666788888
Q ss_pred ChhHHHHHHHHHHHcCCCCHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~ 361 (415)
+++.|++.++.+.+..|.+..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCCHH
Confidence 888888888888888777643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.25 Score=35.09 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=96.9
Q ss_pred HcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHH
Q 014978 195 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274 (415)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 274 (415)
.-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 44577888888887776542 3445666665555556666666666665432 121 1344444444
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 275 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 275 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
..+-.+- .+.......+..+..+|.-++-.+++...+. ..+|++.....+..+|.+.|+..+|.+++.++-+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4443321 2456667778888899999999999988654 4678899999999999999999999999999999
Q ss_pred cCCCC
Q 014978 355 AGHVS 359 (415)
Q Consensus 355 ~~~~~ 359 (415)
.|...
T Consensus 154 kG~kE 158 (172)
T 1wy6_A 154 KGEKE 158 (172)
T ss_dssp TTCHH
T ss_pred hhhHH
Confidence 88763
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=1.4 Score=41.03 Aligned_cols=319 Identities=12% Similarity=0.034 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
...|..+....+.|+++.+..+...+......+ ..|..+...+ ....+++....+++-.. .+.....-+..+..+.
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 346788888999999999999887775431111 2333333222 23355555544443221 1111122233445566
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK--AA 169 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~--a~ 169 (415)
+.+++...+.++.. .|.+...-.....+....|+..+|....+.+-..| ......+..++..+.+.|.+.. ..
T Consensus 84 ~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 84 RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 67776655554432 25566666667778888898888888777776665 3445667777877776665433 33
Q ss_pred HHHHHHHhcC-----------CCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhh---HHHHHHHHHhcCC
Q 014978 170 TTLKEMEKRT-----------CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE---YTCVISSLVKLGE 234 (415)
Q Consensus 170 ~~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 234 (415)
.-++.+...| ++++... ...++.... ++..+...... ..++... +...+.-+. ..+
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla-r~d 229 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVA-RQD 229 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH-HHC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH-hcC
Confidence 3333333332 1111111 111111111 11111111110 1122221 111222222 337
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHH----HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNIL----LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 310 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 310 (415)
.+.|...+....+.. ..+......+ +......+...++...+....... ++.....-.+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 788888888776543 2233322222 222233343456666666654432 344334444444557788999888
Q ss_pred HHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 311 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
.|..|... . .....-..-+..++...|+.++|..+|+.+.+
T Consensus 307 ~~~~l~~~--~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPME--A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTT--G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccc--c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887551 1 12333344456677788888888888887764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.24 Score=43.33 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQK-----DNVQMDAETQKVLKI 401 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~~-----~~~~p~~~t~~~l~~ 401 (415)
...++.++...|+++++...++.+....|.+...|..++.++.+.|+. |++.|....+ .|+.|+..+-.+...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445667788899999999999999999888999999999999999998 4666666543 699999999887766
Q ss_pred hcc
Q 014978 402 TSE 404 (415)
Q Consensus 402 ~~~ 404 (415)
+..
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.52 Score=35.49 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHH
Q 014978 193 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEM 272 (415)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (415)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344556666666665543 1445666666666667777766666665422 2334444555666665
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 273 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 273 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
..++-+.....| -++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554444433 134444455566777777776655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.52 Score=35.48 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChH
Q 014978 157 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 236 (415)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 236 (415)
....+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 2566777777777777777777777766532 333444555566666
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 237 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
.-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6555554444333 234444555566777777776644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.43 Score=33.90 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcc
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 214 (415)
...++.+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444444444444443221 13344444444444444444444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.15 Score=35.87 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHH
Q 014978 132 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK---AATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 206 (415)
.+.+-|.+....| .++..+-..+..++++..+..+ ++.+++++.+.+ .| .......+.-++.+.|++++|.+.
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444333333 2444444444445555444433 444555444432 11 112222334444555555555555
Q ss_pred HHHHHH
Q 014978 207 WKKMMS 212 (415)
Q Consensus 207 ~~~~~~ 212 (415)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.28 E-value=2.4 Score=41.30 Aligned_cols=313 Identities=10% Similarity=0.006 Sum_probs=150.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcCcHHHHHHHHhhcCC--------CCHhHHHHHHH
Q 014978 53 HSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLDKVPQMLQELKKNTS--------PDVVTYNLWLA 122 (415)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~ 122 (415)
-+....|+.++++.++......+-..+.. .-..+.-+.+..|..+++..++........ +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556677777777776654321011211 222233345555655566666666443211 11222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 014978 123 ACASQND-KETAEKAFLELKKTKIDPDWI--SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 199 (415)
Q Consensus 123 ~~~~~~~-~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (415)
+++-.|. -+++...+..+.... .+... .-..|...+.-.|+.+-...++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 234455555554432 11111 11233344556677666666666665431 1112222233334446777
Q ss_pred hHHHHHHHHHHHHcccccChhh--HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHH
Q 014978 200 KDEVLRIWKKMMSLFAKMNDAE--YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFY 277 (415)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 277 (415)
.+.+..+.+.+... ..|.... -..+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777777653 1222211 1233445667778777777777776532 223333333333444566666667777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC---------ChhHHHH
Q 014978 278 NRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG---------DIDGAEH 347 (415)
Q Consensus 278 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~ 347 (415)
..+.+.+ .|....-..+.-+....|.. .++++.+..+.. .+|..+-..-+.++...| ++...++
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-----D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-----DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-----CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 6665543 34444444444455555543 567777777765 345544433333333222 3344444
Q ss_pred HHHHHHHcCCCC--HHHHHHHHHHHHhcCC
Q 014978 348 LLVTLRNAGHVS--TEIYNSLLRTYAKAGK 375 (415)
Q Consensus 348 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 375 (415)
.+.........+ ...-..+..+....|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 444444332222 3455666666666653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.00023 Score=62.23 Aligned_cols=246 Identities=12% Similarity=0.046 Sum_probs=167.6
Q ss_pred CcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014978 79 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL 158 (415)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (415)
.+..|..|..+..+.+++.+|++.|-+ ..|...|..++.+..+.|.+++-..++...++..- ++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456799999999999999999877633 34667789999999999999999999987776633 33444689999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--------------------ccccC
Q 014978 159 YIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL--------------------FAKMN 218 (415)
Q Consensus 159 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~ 218 (415)
|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+-.. .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776544432 355555666777777777777666655433110 01125
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 014978 219 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWG 298 (415)
Q Consensus 219 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 298 (415)
..||..+-.+|...+++..|.-.--.+.- .+.-...++..|-..|.+++...+++...... +.....|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 66888888899999988877655444332 22233346777888999999999998887532 4577788888888
Q ss_pred HHhcCCHHHHHHHHHHhHhcccCCCC------CHHHHHHHHHHHHHcCChhHHH
Q 014978 299 YLKKGQMEKVLECFKKAIGSVRKWVP------DHRLITAAYNKLEEQGDIDGAE 346 (415)
Q Consensus 299 ~~~~~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~ 346 (415)
|++- ++++..+.++.-.+. ..++- ....|..++-.|.+-..++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sr-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8764 466666655543331 11111 1224666777777777777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.43 E-value=1.8 Score=43.89 Aligned_cols=150 Identities=10% Similarity=-0.024 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
.|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 4666777777777777777766665543211111 1466677777777777777777766655432 233444444
Q ss_pred HHHHcC------------CChHHHHHHHHHHHHccccc-ChhhHHHHHH-HHHhcCChHHHH-HHHHHHHhccC---CC-
Q 014978 192 SLYTNM------------GYKDEVLRIWKKMMSLFAKM-NDAEYTCVIS-SLVKLGEFEKAE-NIYDEWESISG---TG- 252 (415)
Q Consensus 192 ~~~~~~------------~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~g~~~~a~-~~~~~~~~~~~---~~- 252 (415)
..++.. |..++..+++..-.+....+ +...|..++. -+...|++..|- -+|+.+.+.+. ..
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~ 1058 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIG 1058 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhcccccc
Confidence 444433 34455555554433221111 1112333333 334556655443 34444433210 11
Q ss_pred ------CCchHHHHHHHHHhc
Q 014978 253 ------DPRVPNILLAAYINR 267 (415)
Q Consensus 253 ------~~~~~~~l~~~~~~~ 267 (415)
-...|..+|+++.--
T Consensus 1059 ~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1059 KKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHHhcC
Confidence 124567777776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.62 Score=44.24 Aligned_cols=125 Identities=15% Similarity=0.035 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCCcccHHH--HHHHHHhcCC-cCcHHHHHHHHhh-------c-CCCCH--
Q 014978 49 SALLHSYVQNKK-SAEAEALMEKMSECGFLKCPLPYNH--MLNLYISNGQ-LDKVPQMLQELKK-------N-TSPDV-- 114 (415)
Q Consensus 49 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~-~~~a~~~~~~~~~-------~-~~~~~-- 114 (415)
..++..+...++ .+.|..+|+++.+.+ |....+-. ++..+...++ --+|.+++.+..+ . .+.+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 688999999998875 54433322 2222222221 2235555544332 1 11221
Q ss_pred --------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 115 --------VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 115 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
.....-...+...|+++.|+.+-++....- +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122333456778899999999999998872 4456699999999999999999999998874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=3.3 Score=36.86 Aligned_cols=243 Identities=13% Similarity=0.079 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH----c
Q 014978 127 QNDKETAEKAFLELKKT-----KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYT----N 196 (415)
Q Consensus 127 ~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~ 196 (415)
.++++.|++.+-.+.+. +...+......++..|...|+++...+.+..+.+. |.. ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37788888877666532 23445667788899999999999988887766543 322 222233333322 2
Q ss_pred CCChHHHHHHHHHHHHc--ccccCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-----CchHHHHH
Q 014978 197 MGYKDEVLRIWKKMMSL--FAKMND--------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PRVPNILL 261 (415)
Q Consensus 197 ~~~~~~a~~~~~~~~~~--~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~ 261 (415)
....+.... ...... .+.... .....|...+...|++.+|..++..+...-...+ ...+...+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222221111 111111 111111 1224567778888888888888888764322222 23455667
Q ss_pred HHHHhcCcHHHHHHHHHHHH----hCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHH----H
Q 014978 262 AAYINRNQLEMAESFYNRLV----TKGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT----A 331 (415)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~----~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~----~ 331 (415)
+.|...+++..|..+++++. .....|+. ..+..++..+...+++.+|...|.++... .....|...+. .
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~-~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT-DAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHSCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-ccccCCHHHHHHHHHH
Confidence 78888888888888888764 22222222 24556667777888888888888887662 22222333222 2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC
Q 014978 332 AYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAG 374 (415)
Q Consensus 332 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 374 (415)
++.+..-.+....-..++......... ....+..++.+|....
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence 222333334444444444444444333 2366777777776643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.84 E-value=0.91 Score=30.21 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 367 (415)
+..+-++.+.. ..+.|++....+.+.+|.+.+++..|.++|+-++..-.....+|..++
T Consensus 28 e~rrglN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 34444444444 455556666666666666666666666666555543222223344443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.73 E-value=1.4 Score=44.62 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 014978 84 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI------------------ 145 (415)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~------------------ 145 (415)
..++..+...+..+-+.++... .+.+...--.++.++...|++++|.++|.+... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhh----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3455556666666665554332 234444445566677777777777777765421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcccc
Q 014978 146 -----DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 216 (415)
Q Consensus 146 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (415)
..-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011234778899999999999999888877654322221 2588899999999999999999887765433
Q ss_pred cChhhHHHHHHHHHhcCC------------hHHHHHHHHHHHh-c-cCCCCCchHHHHHHHHHhcCcHHHHH-HHHHHHH
Q 014978 217 MNDAEYTCVISSLVKLGE------------FEKAENIYDEWES-I-SGTGDPRVPNILLAAYINRNQLEMAE-SFYNRLV 281 (415)
Q Consensus 217 ~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~ 281 (415)
-...+..++...+..|. .++..+++..-.+ . .+...+.-|..|=.-+...|++..|- -+|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 23455666666665544 4455556654322 2 11222233455545555677766554 4555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.22 Score=43.46 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAYS 188 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 188 (415)
+...++..+...|+++++...+..+.... +-+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44556777788888888888888887663 55777888888888888888888888887654 48888876644
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.54 E-value=1 Score=42.81 Aligned_cols=49 Identities=14% Similarity=-0.064 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 325 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+..-|..|.....+.+.+++|.+.|+...... -++..+..|++.|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34458888888889999999999999998643 47888999999998876
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=1.1 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 150 ISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
..--.+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445666666666666666666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.70 E-value=0.85 Score=30.35 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3446666677777777777777777777888888888888887777665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.12 E-value=6.1 Score=35.11 Aligned_cols=189 Identities=10% Similarity=0.047 Sum_probs=119.4
Q ss_pred CCcCcHHHHHHHHhhc------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH--HHHHHHHHhcCC
Q 014978 94 GQLDKVPQMLQELKKN------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISY--STLTSLYIKMEL 164 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~--~~l~~~~~~~~~ 164 (415)
|+++.|++.+..+.+. .+........++..|...++++...+.+..+... |..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888887666542 3445667888999999999999998888776543 433333221 222333333343
Q ss_pred HHHHHH--HHHHHHh--cC-CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccCh-----hhHHHHHHHHHh
Q 014978 165 PEKAAT--TLKEMEK--RT-CRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTCVISSLVK 231 (415)
Q Consensus 165 ~~~a~~--~~~~~~~--~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 231 (415)
.+.... +.+.+.. .| +-.. ......|...+...|++.+|..++..+...-...+. ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332222 1111111 11 1111 122356788899999999999999998754222221 256777889999
Q ss_pred cCChHHHHHHHHHHHhc--cCCCC----CchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 232 LGEFEKAENIYDEWESI--SGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 232 ~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
.+++..|..++.++... ...++ ...+...+..+...+++.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999987531 11222 23456677778888999999888877764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.96 E-value=2.3 Score=30.06 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 368 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 368 (415)
+..+-++.+.. ..+.|++......+.+|.+.+++..|.++|+-++..--....+|..+++
T Consensus 71 ElrrglN~l~~--~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34444444444 4566777777777777777777777777776666543333344554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.96 E-value=2.4 Score=30.04 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=47.8
Q ss_pred CCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 286 KPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|+..+--.+.+++.+..+. ..++.++....+. +..-....+-.|..++.+.|+++.|++..+.+.+..|.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45666666666777776654 3567777777662 2111234455666677888888888888888888777754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.43 E-value=1.3 Score=32.87 Aligned_cols=117 Identities=8% Similarity=-0.104 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcC---CCCc-------chHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCCccc
Q 014978 15 SYRQRVAQAQALQTRARENFFENLPDK---MRGP-------DTCSALLHSYVQNKKSAEAEALMEKMSEC--GFLKCPLP 82 (415)
Q Consensus 15 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 82 (415)
.+.+.-.+...|.++.|+-+.+.+... .|+. .++..+.+++...|++.+|...|++.++. .+..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455566666777776665553332 2221 14455666677777777777777765431 11111111
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 83 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
...+.. ....... ...+.+...---+..+|.+.+++++|+.+++.+...
T Consensus 103 ~~~~~~----~ss~p~s--------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTGN----SASTPQS--------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----cCCCccc--------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111100 0000000 001233445455888999999999999999876544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=10 Score=35.36 Aligned_cols=306 Identities=8% Similarity=-0.007 Sum_probs=152.0
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 21 AQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+++.+++..-+.++.. . +.+...-+....+....|+..+|......+-..| ...+..+..++..+.+.|.+....
T Consensus 81 ~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 34567777777775554 2 1355555666777777888877777777766655 345667777777777776654432
Q ss_pred HHHHHHh---------------hcCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHh
Q 014978 101 QMLQELK---------------KNTSPDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPDWIS---YSTLTSLYIK 161 (415)
Q Consensus 101 ~~~~~~~---------------~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~ 161 (415)
++.+|. ...+++...+ ..++... .++..+...... ..++... +...+.-+.+
T Consensus 157 -~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 157 -YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh
Confidence 222221 1122221111 1111111 111111111111 1122221 1112222222
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHH
Q 014978 162 MELPEKAATTLKEMEKRTCRKNRVA----YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 237 (415)
Q Consensus 162 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 237 (415)
.+.+.|...+....+.. ..+... +..+...+...+...++...+...... .++.......+....+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 36778888887776443 223222 222333333444344555555554332 2233333344444556788888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC------------CCCC-------C---Hh-----
Q 014978 238 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK------------GIKP-------C---YT----- 290 (415)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~p-------~---~~----- 290 (415)
|...|..+.... .......-.+..++...|+.++|..+|..+... |..+ + ..
T Consensus 304 a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (618)
T 1qsa_A 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (618)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccC
Confidence 888887765422 112333445666777778888888877776432 1110 0 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 349 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 349 (415)
.-..-+..+...|....|...|..... . .+......+.......|.++.+....
T Consensus 383 ~~~~r~~~L~~~g~~~~a~~ew~~~~~---~--~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 383 PEMARVRELMYWNLDNTARSEWANLVK---S--KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---T--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHCCChhhHHHHHHHHHh---c--CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 011223445667777777777777655 1 23333334444455566666655444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.63 E-value=2.9 Score=29.58 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 294 LLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 294 ~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
.+.-++.+.|+++.|.++.+.+++
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.25 E-value=2.4 Score=29.99 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 270 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 270 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
.-+..+-++.+...++.|++......+.+|.+.+|+..|.++|+-...+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHH
Confidence 3456666777777777888888888888888888888888888877662 333344555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.23 E-value=7.3 Score=32.53 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHhHhcccCCCCCHHH
Q 014978 252 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK---GQMEKVLECFKKAIGSVRKWVPDHRL 328 (415)
Q Consensus 252 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~p~~~~ 328 (415)
.++.....+...|.+.|++.+|...|-.-. .-+...+..++.-+... |...++--++.+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 356677788888888888888877664111 11345555555554444 443332222222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 329 ITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 329 ~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.++ -|...|+...|..+++...
T Consensus 194 --aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 --LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp --HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred --HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 2445678888888877654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.89 E-value=6.5 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=34.7
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
++..+...|.+.|++++|.+.|.++... ...-...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666666666666666666666543 22233455555666666666666666665553
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.98 E-value=3 Score=27.64 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+.|++++|..+.+.+. .||...|..|... +.|.-+.+...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 444555555555444332 4555555444332 4455555555554444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.54 E-value=7.2 Score=28.01 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCH
Q 014978 286 KPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 360 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (415)
.|+..+--.+.+++.+..+. .+++.+++..... .-.-...-...|..++.+.|++++|+++.+.+.+..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 46666766777777777654 4677777777662 2111233445566678888888888888888888888764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.97 E-value=15 Score=32.44 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMM 211 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 211 (415)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665432111 12334445555555556665555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.88 E-value=5.5 Score=32.21 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=34.2
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 263 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
...+.|+++.++.....-++..+ -|...-..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566677777766666665532 2555566666777777777777776666655
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.25 E-value=2.9 Score=27.71 Aligned_cols=50 Identities=6% Similarity=0.035 Sum_probs=21.9
Q ss_pred HHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014978 90 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 144 (415)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 144 (415)
+.+.|++++|..+.+.+. .||...|..|... +.|.-+.+...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 344455555544433322 4444444443332 4444444444444444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=82.00 E-value=9.6 Score=30.85 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHhhhhHHHHHHHHhcCcCC-C-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 014978 20 VAQAQALQTRARENFFENLPDKM-R-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC 79 (415)
Q Consensus 20 ~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (415)
...++.|+.+....+++.-.... . +... .+.+...+..|+.+- ++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~~----v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGG-WTPLHNAVQMSREDI----VELLLRHGADPV 66 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTTC-CCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 34567777777766666532211 1 1111 233444555666653 344444554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.98 E-value=22 Score=29.94 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHH----HHHHHHHcccccChhhHHHHHHH
Q 014978 153 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR----IWKKMMSLFAKMNDAEYTCVISS 228 (415)
Q Consensus 153 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 228 (415)
.++..=|.+.+++++|.+++..-. ..+.+.|+...+-+ +++-..+.++++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444666777777777654321 11222333333222 22333444555555555555555
Q ss_pred HHhcCChH-HHHHHHHHHHh----cc--CCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 014978 229 LVKLGEFE-KAENIYDEWES----IS--GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 301 (415)
Q Consensus 229 ~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 301 (415)
+.....-+ .-.++++.+.+ .| ...|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHH
Confidence 54433211 11222332222 22 23456677778888888888888887762 2 223344666666655544
Q ss_pred cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014978 302 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 353 (415)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 353 (415)
.+...++ +...-..++ -|...++...|..+++...
T Consensus 180 ~~~~~e~----------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTA----------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGH----------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccH----------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4432222 122222222 2555677888877665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.08 E-value=9.8 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 014978 122 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 179 (415)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 179 (415)
..+...|++++|..+.+... .||...|.+|.. .+.|..+++...+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455666666665554332 455555544432 34555555555555555544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.96 E-value=7.4 Score=31.50 Aligned_cols=52 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
.+.|++++++.....-++.. +.|...-..++..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555444444442 33444444455555555555555555444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.59 E-value=14 Score=26.61 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 146 DPDWISYSTLTSLYIKMELP---EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.|+..+--.+..++++..+. .+++.+++++.+.+..-.......+.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555544555555555443 24555555555432111222333444555666666666666666655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 415 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 6/215 (2%)
Query: 31 RENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 90
+ + + + + S L + + A EK Y ++ N+
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVL 213
Query: 91 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-W 149
D+ + V + Q + A + + ++ P
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFP 271
Query: 150 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209
+Y L + + +A + + L ++ G +E +R+++K
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRK 330
Query: 210 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 244
+ +F + A ++ + S L + G+ ++A Y E
Sbjct: 331 ALEVFPEFAAA-HSNLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 35/295 (11%), Positives = 82/295 (27%), Gaps = 18/295 (6%)
Query: 88 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 147
+ G + + +L + + L + + + K +P
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA--IKQNP 64
Query: 148 DWI-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 206
+YS L ++Y + ++A + + + +L + V
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 266
+ + + E KA + + L +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNA 181
Query: 267 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 326
+ ++ +A + + VT + P + Y+ G + K F +A+ + + +
Sbjct: 182 QGEIWLAIHHFEKAVT--LDPNFL------DAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 327 RLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 377
+ L EQG ID A + Y +L + G +
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (86), Expect = 0.002
Identities = 33/245 (13%), Positives = 57/245 (23%), Gaps = 3/245 (1%)
Query: 95 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 154
L ++ Q+L S + A F + I PD
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS--QALAIRPDMPEVFN 75
Query: 155 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 214
+Y+ AA + A+ + G
Sbjct: 76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 135
Query: 215 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 274
++ KL E + E + +E I+ L
Sbjct: 136 PNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194
Query: 275 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334
T + T L YL G ++ FK A+ + +HR +
Sbjct: 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELS 254
Query: 335 KLEEQ 339
L +
Sbjct: 255 LLGQD 259
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.76 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.39 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.38 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.38 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.13 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.67 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.23 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.87 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.66 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.85 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.5e-25 Score=193.26 Aligned_cols=351 Identities=17% Similarity=0.130 Sum_probs=212.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
..+..+.+.|++++|++.|+.+.+..| ++.++..+...+.+.|++++|+..|++..+.. +.+..+|..+..++.+.|+
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 356677899999999999999988777 57889999999999999999999999998875 3456788999999999999
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
+++|+..+....+..+.+..............+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999999999887766666666666666666665555555544444332 223333333444444455555555555444
Q ss_pred HhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCc
Q 014978 176 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 255 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 255 (415)
.... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++.....+ +.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 4432 223444444555555555555555555555443221 33344555555555555555555555554443 22344
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHH
Q 014978 256 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 335 (415)
Q Consensus 256 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 335 (415)
.+..+...+.+.|++++|...|++..+... -+..++..+...+...|++++|.+.++.+.. ..+.+...+..+...
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc---cCCccchhhhHHHHH
Confidence 444455555555555555555555554321 1334455555555555555555555555544 233444455555555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 014978 336 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 376 (415)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (415)
+...|++++|...|+++.+..|.+..++..+..+|.+.|++
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555555555555555555555555555
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6e-22 Score=174.05 Aligned_cols=351 Identities=13% Similarity=0.060 Sum_probs=286.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
+...+.+.|++++|++.++++.+.. |-++..+..+..++.+.|++++|+..|+++.+..|.+..+|..++.++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4567788999999999999998874 345778888999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
++|...+....+.. +.+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999998875 4455566666666777777777777776666553 344555566677778888999999998888
Q ss_pred HHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh
Q 014978 211 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 290 (415)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 290 (415)
....+. +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++.....+. .+..
T Consensus 162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 238 (388)
T d1w3ba_ 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred hccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHH
Confidence 776433 56678888889999999999999999988865 33677889999999999999999999999987643 4667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 291 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 291 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
.+..+...+.+.|++++|+..|+++++ ..+-+...+..+...+...|++++|...++......+.....+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 888899999999999999999999988 23446788999999999999999999999999999999999999999999
Q ss_pred HhcCCC--cHHHHHHHHhCCCCCCHHHH--HHHHHhccCC-cccccc
Q 014978 371 AKAGKM--PLIIVERMQKDNVQMDAETQ--KVLKITSEMP-VSEVSS 412 (415)
Q Consensus 371 ~~~g~~--a~~~~~~m~~~~~~p~~~t~--~~l~~~~~~~-~~~~~~ 412 (415)
.+.|++ |...+++..+ +.|+.... .+-..+...+ .+++.+
T Consensus 316 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 4666666544 55665443 4445555555 445443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.3e-16 Score=133.69 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 91 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (415)
...|..|..+.+.|++++|+..|+.+.+..| ++.+|..+..++...|++++|...|++..+.. +-+...|..+...+.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 3357788888899999999999988888766 56788888888888999999999988888764 335667777888888
Q ss_pred hcCCcCcHHHHHHHHhhcCCCCHhHH---------------HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 014978 92 SNGQLDKVPQMLQELKKNTSPDVVTY---------------NLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTL 155 (415)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l 155 (415)
..|++++|.+.++......+.....+ ...+..+...+.+.++...+.+..+.. -.++..++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 88888888888888765433222211 111122233344555555555554432 12234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCCh
Q 014978 156 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 235 (415)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 235 (415)
...+...|++++|...+++..... +-+...|..+...+...|++++|++.|++..+..+. +..++..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence 666666666666666666655542 234555555666666666666666666665554322 344555566666666666
Q ss_pred HHHHHHHHHHHh
Q 014978 236 EKAENIYDEWES 247 (415)
Q Consensus 236 ~~a~~~~~~~~~ 247 (415)
++|...|++..+
T Consensus 257 ~~A~~~~~~al~ 268 (323)
T d1fcha_ 257 REAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.8e-15 Score=126.96 Aligned_cols=243 Identities=15% Similarity=0.041 Sum_probs=115.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH
Q 014978 51 LLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 130 (415)
Q Consensus 51 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (415)
....+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...|.+..+..|.+...|..++.++...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 3444555555555555555555543 223445555555555555555555555555544445555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 014978 131 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 210 (415)
Q Consensus 131 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (415)
++|.+.+++..... |+............. ..+.......+..+...+.+.++.+.+.+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554431 211100000000000 000000000111122223444555555555
Q ss_pred HHcccc-cChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 014978 211 MSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 289 (415)
Q Consensus 211 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 289 (415)
.+..+. ++...+..+...+...|++++|...+++..... +.+...|..+...|...|++++|.+.|++.++... -+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccH
Confidence 443221 223345555555566666666666666655543 22444555566666666666666666666555321 134
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 290 TTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
..|..+...|.+.|++++|+..|+++++
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555566666666666666666666555
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-11 Score=103.42 Aligned_cols=198 Identities=10% Similarity=0.094 Sum_probs=131.1
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 46 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 46 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
.+|+.+...+.+.+.+++|+++++++++.. |-+..+|+....++...| ++++|+..++...+..|.+..+|..+..++
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 355566666777777777777777777764 334556666666666655 367777777777766777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-----
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY----- 199 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 199 (415)
.+.|++++|+..++++.+.. +.+...|..+..++.+.|++++|++.++++.+.+ +.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 77777777777777777663 4456677777777777777777777777777763 3356666666655555444
Q ss_pred -hHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 200 -KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 200 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
+++|++.+.+..+..+. +...|..+...+. ....+++...++...+.
T Consensus 201 ~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 45677777777665432 4555555544433 33456666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.2e-12 Score=104.73 Aligned_cols=196 Identities=9% Similarity=0.094 Sum_probs=138.9
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYI 160 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (415)
.|+.+...+.+.+.+++|+++++++.+..|.+..+|+....++...| ++++|+..++...+.. +-+..+|..+..++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 45556666777888888888888888877888888888888877765 4788888888887764 446678888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCC------
Q 014978 161 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE------ 234 (415)
Q Consensus 161 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 234 (415)
+.|++++|++.++++.+.. +.+...|..+...+...|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 8888888888888888763 446778888888888888888888888888876443 55566666555555544
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 235 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
+++|...+..+.+.. +.+...|+.+...+.. ...+++.+.++...+
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 456666666666654 3355556555544433 334556666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=3.1e-10 Score=97.10 Aligned_cols=267 Identities=10% Similarity=0.106 Sum_probs=156.7
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHH
Q 014978 88 NLYISNGQLDKVPQMLQELKKNTSPD-----VVTYNLWLAACASQNDKETAEKAFLELKKTKI-DP----DWISYSTLTS 157 (415)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~ 157 (415)
..+...|++++|++++++..+..|.+ ..++..+..++...|++++|...+++..+... .+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 44455566666666666554443322 23455556666666777776666666543210 01 1224455566
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcccc----cChhhHHHHH
Q 014978 158 LYIKMELPEKAATTLKEMEKR----TCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK----MNDAEYTCVI 226 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~ 226 (415)
.+...|++..+...+...... +.... ...+..+...+...|+++.+...+......... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 666777777777766665431 11111 123445566677777777777777776654221 1222344555
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhHHHHHHH
Q 014978 227 SSLVKLGEFEKAENIYDEWESISGTGD------PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWELLTW 297 (415)
Q Consensus 227 ~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 297 (415)
..+...++...+...+........... ...+..+...+...|+++.|...+..........+ ...+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566677777777777766544221111 12344556667778888888888877665432222 234556677
Q ss_pred HHHhcCCHHHHHHHHHHhHhcc--cCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 014978 298 GYLKKGQMEKVLECFKKAIGSV--RKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRN 354 (415)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~--~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 354 (415)
.+...|++++|...++.++... .+..|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888888776421 122232 34567777788888888888888887655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=1.6e-10 Score=97.01 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 014978 166 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 245 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 245 (415)
++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+..+.....+|...+..+.+.|+.+.|..+|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332223333444444444445555555555555444322212223444444444555555555555554
Q ss_pred HhccCCCCCchHHHHHHH-HHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCC
Q 014978 246 ESISGTGDPRVPNILLAA-YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 324 (415)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p 324 (415)
.+.. +.+...|...+.. +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++++.. .+..|
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~-~~~~~ 237 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-GSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-SSSCG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCh
Confidence 4432 2222333322222 122345555555555555431 123445555555555555555555555555542 11222
Q ss_pred C--HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 325 D--HRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 325 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
+ ...|...+..-...|+.+.+..+++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 234555555545555666665555555554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.7e-10 Score=95.97 Aligned_cols=264 Identities=12% Similarity=0.017 Sum_probs=151.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcCcHHHHHHHHhhc---CCC---CHhHHHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCP------LPYNHMLNLYISNGQLDKVPQMLQELKKN---TSP---DVVTYNL 119 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~ 119 (415)
...+...|++++|++++++..+.. |+. ..+..+..++...|++++|+..|++..+. .+. ...++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344455555555555555555432 221 23344445555556666666665554332 111 1223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKT----KIDP---DWISYSTLTSLYIKMELPEKAATTLKEMEKRT----CRKNRVAYS 188 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 188 (415)
+...+...|++..+...+...... +... ....+..+...+...|+++.+...+....... .......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 555666667777666666655421 1111 11244556667777777777777777665432 112233445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcccc----c--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC---CchHHH
Q 014978 189 SLLSLYTNMGYKDEVLRIWKKMMSLFAK----M--NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD---PRVPNI 259 (415)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 259 (415)
.....+...+++..+...+.+....... + ....+..+...+...|+++.|...+..........+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5556666777777777777665543211 1 112345556667778888888888877655432222 223445
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHh----CCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 014978 260 LLAAYINRNQLEMAESFYNRLVT----KGIKPC-YTTWELLTWGYLKKGQMEKVLECFKKAIG 317 (415)
Q Consensus 260 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 317 (415)
+..++...|++++|...++.... .+..|+ ...+..+...|.+.|++++|.+.++++++
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67778888888888888887653 233332 34667777888888999999988888766
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=3.2e-12 Score=108.96 Aligned_cols=229 Identities=8% Similarity=-0.060 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHcCCChHHHHHH
Q 014978 130 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--LPEKAATTLKEMEKRTCRKNRVAYS-SLLSLYTNMGYKDEVLRI 206 (415)
Q Consensus 130 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~ 206 (415)
+++|+.+++...+.. +.+...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 445555555554442 233344444444444433 2455555555555442 22333332 223444445555555555
Q ss_pred HHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 014978 207 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 286 (415)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 286 (415)
++.+.+..+. +...|..+..++...|++++|...+....+.. | ....+...+...+..+.+...+....... .
T Consensus 167 ~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 5555544332 34445555555555555554433333222211 0 00112222333444445555555554432 1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHH
Q 014978 287 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 366 (415)
Q Consensus 287 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 366 (415)
++...+..+...+...+++++|...+.+... ..+.+...+..+..++...|++++|.+.++++.+.+|.....|+.|
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 2333444444555555666666666665544 1112334555555566666666666666666666655555555555
Q ss_pred HHHH
Q 014978 367 LRTY 370 (415)
Q Consensus 367 ~~~~ 370 (415)
...+
T Consensus 317 ~~~~ 320 (334)
T d1dcea1 317 RSKF 320 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.6e-10 Score=96.98 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=94.4
Q ss_pred CcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 175 (415)
Q Consensus 97 ~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 175 (415)
++|..+|++..+. .|.+...|...+....+.|+++.|..+|+++.+........+|...+....+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455555555543 344444555555555556666666666666554421112234555555555566666666666665
Q ss_pred HhcCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccC-CCC
Q 014978 176 EKRTCRKNRVAYSSLLSL-YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG-TGD 253 (415)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 253 (415)
.+.+ +.+...|...... +...|+.+.|..+|+.+....+. +...|...+......|+.+.|..+|++..+... .|+
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 5542 2233333332222 22345566666666666554222 344555555555666666666666666554321 111
Q ss_pred --CchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 254 --PRVPNILLAAYINRNQLEMAESFYNRLVT 282 (415)
Q Consensus 254 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 282 (415)
...|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22455555555556666666666665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=8e-11 Score=96.18 Aligned_cols=131 Identities=11% Similarity=-0.041 Sum_probs=83.2
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 124 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (415)
..+|..+..+|.+.|++++|++.|++.++.. +.++.+|..+..++.+.|++++|+..|+++.+..|.+..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 3456666777777777777777777777654 335566777777777777777777777777666666667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 177 (415)
...|++++|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 77777777777777776653 23333333344444444544444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=7.7e-12 Score=106.59 Aligned_cols=264 Identities=8% Similarity=-0.025 Sum_probs=180.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHH----------HhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 014978 59 KKSAEAEALMEKMSECGFLKCP-LPYNHMLNLY----------ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 127 (415)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (415)
+..++|++++++..+.. |+. ..|+..-..+ ...|++++|+.+++...+..|.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 33467777777776653 443 3343322222 2234467788888888777788888888887777666
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 128 N--DKETAEKAFLELKKTKIDPDWISYS-TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 128 ~--~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
+ ++++|...+.++.+.. +++...+. .....+...+.+++|+..++.+.+.+ +-+...|+.+..++.+.|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 5 4788888888888764 34455543 44566777888888988888888774 446778888888888888888776
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 284 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 284 (415)
..+....... |.. ......+...+..+++...+....... +++...+..+...+...|+.++|...+.+.....
T Consensus 199 ~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6665544432 111 123334556677778888888777654 4466667777788888899999999998888753
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCC-HHHHHHHHHHHH
Q 014978 285 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLE 337 (415)
Q Consensus 285 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 337 (415)
+ .+...+..+...+...|++++|++.++++++ +.|+ ..-|..|...+.
T Consensus 273 p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~----ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 273 K-WCLLTIILLMRALDPLLYEKETLQYFSTLKA----VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp H-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCcccHHHHHHHHHHHh
Confidence 2 1456777888889999999999999999987 4564 344555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=3.8e-10 Score=92.06 Aligned_cols=199 Identities=14% Similarity=0.026 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH
Q 014978 151 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 230 (415)
Q Consensus 151 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (415)
+|..+..+|.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|+..|+++.+..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44444555555555555555555555442 234455555555555555555555555555554322 3334555555555
Q ss_pred hcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC----HH
Q 014978 231 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ----ME 306 (415)
Q Consensus 231 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----~~ 306 (415)
..|++++|...++...+.. +.+......+...+.+.+..+.+..+........ ++...+. ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 5555555555555555443 1122222223333333444333333333333321 1111111 1111111111 11
Q ss_pred HHHHHHHHhHhcccCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 014978 307 KVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (415)
.+...+..... ..|+ ..++..+...+...|++++|...|++.....|.+
T Consensus 193 ~~~~~~~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHhhh----cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 11111111111 1111 2345556666777777777777777777666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2e-09 Score=82.97 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014978 14 QSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 93 (415)
Q Consensus 14 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (415)
..+..|+.+...|+++.|++.|+.+.+ |++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence 356788899999999999999998755 778889999999999999999999999999876 45677888888999999
Q ss_pred CCcCcHHHHHHHHhhcCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014978 94 GQLDKVPQMLQELKKNTSPD----------------VVTYNLWLAACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (415)
|++++|++.|++.....+.+ ..++..+..++.+.|++++|.+.+....+.
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998876532222 234555666667777777777777666655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=5.7e-09 Score=86.37 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHH
Q 014978 121 LAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-N----RVAYSSL 190 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 190 (415)
...|...+++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+..... + ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666666666666665432 1111 12355555666666666666666655544321000 0 2233334
Q ss_pred HHHHH-cCCChHHHHHHHHHHHHccc----ccC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 191 LSLYT-NMGYKDEVLRIWKKMMSLFA----KMN-DAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 191 ~~~~~-~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
...|. ..|++++|++.+++..+... .+. ..++..+...+...|++++|...++++..
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 44442 23555555555555433210 000 11234444444445555555555544443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=4.1e-09 Score=73.84 Aligned_cols=103 Identities=7% Similarity=-0.097 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 17 RQRVAQAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 17 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
..|..+.+.|++++|+..|+.+....| ++..|..+..++...|++++|+..++...+.+ +.++..|..+..++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 445555566666666666666555544 44555555556666666666666666555543 3345555555555555666
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLW 120 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l 120 (415)
+++|+..|++..+..|.+...+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6666666655555444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=2e-07 Score=76.88 Aligned_cols=243 Identities=9% Similarity=0.073 Sum_probs=145.2
Q ss_pred CcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 97 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
.++.+++++..+..++....+..+.. ...+++++|..+|.++ ...|...|++++|.+.|.++.
T Consensus 2 ~~~~~~l~~aek~~~~~~~~~~~~~~--~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~ 64 (290)
T d1qqea_ 2 SDPVELLKRAEKKGVPSSGFMKLFSG--SDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAA 64 (290)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSC--CSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCcchhHHHHhcC--CccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHH
Confidence 35666666665555555433332211 1233456676665544 556778888888888888776
Q ss_pred hc----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcccccC-----hhhHHHHHHHHHh-cCChHHHHHHHHHH
Q 014978 177 KR----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVK-LGEFEKAENIYDEW 245 (415)
Q Consensus 177 ~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 245 (415)
+. +-++ -..+|..+..+|.+.|++++|.+.+++..+.....+ ..++..+...|.. .|++++|...+++.
T Consensus 65 ~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A 144 (290)
T d1qqea_ 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 52 1111 235677888888888888888888887765422211 2345566666644 58888888888876
Q ss_pred HhccCC-C----CCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 246 ESISGT-G----DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWELLTWGYLKKGQMEKVLECFKK 314 (415)
Q Consensus 246 ~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 314 (415)
.+.... . ...++..+...+...|++++|...|+++......... ..+...+..+...|+++.|...+++
T Consensus 145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~ 224 (290)
T d1qqea_ 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 542111 0 1234667788888888888888888887764221111 1233455566778888888888888
Q ss_pred hHhcccCCCC--CHHHHHHHHHHHHH--cCChhHHHHHHHHHHHcC
Q 014978 315 AIGSVRKWVP--DHRLITAAYNKLEE--QGDIDGAEHLLVTLRNAG 356 (415)
Q Consensus 315 ~~~~~~~~~p--~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 356 (415)
+.+....+.. .......++.++.. .+.+++|...|+++.+.+
T Consensus 225 ~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 7662111111 12345666666654 234777777777665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.6e-08 Score=74.61 Aligned_cols=123 Identities=11% Similarity=-0.079 Sum_probs=81.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
...+...|+++.|++.|+++ .+|++.+|..+..++...|++++|++.|++..+..|.+...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 44566777788887777653 23556667777777777778888888777777767777777777777777777777
Q ss_pred HHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 132 TAEKAFLELKKTKID--------------PD-WISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 132 ~a~~~~~~~~~~g~~--------------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+|...|++....... ++ ..++..+..++.+.|++++|.+.+....+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777776543100 00 133445555566666666666666655544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=8.7e-08 Score=66.86 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=73.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcC
Q 014978 261 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 340 (415)
Q Consensus 261 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 340 (415)
...+.+.|++++|...|++.++..+ -+...|..+..+|...|++++|+..+..+++. .+.+...|..+..++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHh---ccchhhHHHHHHHHHHHcc
Confidence 4556677777777777777776532 25566777777777777777777777777762 3456677777777777777
Q ss_pred ChhHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014978 341 DIDGAEHLLVTLRNAGHVSTEIYNSLLRT 369 (415)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 369 (415)
++++|+..|++..+..|.++.++..+-++
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777766666555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.2e-08 Score=74.54 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=55.2
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHH
Q 014978 52 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 131 (415)
Q Consensus 52 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (415)
...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..|.+..+|..++.++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 445556666666666666666554 3345555556666666666666666666665555556666666666666666666
Q ss_pred HHHHHHHHHHhC
Q 014978 132 TAEKAFLELKKT 143 (415)
Q Consensus 132 ~a~~~~~~~~~~ 143 (415)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666666655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.76 E-value=2.5e-05 Score=62.91 Aligned_cols=227 Identities=15% Similarity=0.023 Sum_probs=141.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYS 188 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (415)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..++..|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566667777777788888888888887765 45555566666665 557777887777777654 333333
Q ss_pred HHHHHHH----cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHH----hcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 014978 189 SLLSLYT----NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV----KLGEFEKAENIYDEWESISGTGDPRVPNIL 260 (415)
Q Consensus 189 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (415)
.+...+. ...+.+.|...++.....|.. .....+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 3433333 245667777777777665532 12222222222 233455556666554442 355566667
Q ss_pred HHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHHHH
Q 014978 261 LAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAA 332 (415)
Q Consensus 261 ~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 332 (415)
...|.. ..+...+..+++...+.| +......+...|.. ..++++|+.+|.++.+ .+ ++..+..|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~--~g---~~~a~~~L 220 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LE---NGGGCFNL 220 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TT---CHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc--cc---CHHHHHHH
Confidence 666665 345667777777777654 45555556555554 5678888888888877 33 45566667
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHcCCCC
Q 014978 333 YNKLEE----QGDIDGAEHLLVTLRNAGHVS 359 (415)
Q Consensus 333 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 359 (415)
...|.+ ..+.+.|.+.|++..+.|..+
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 766664 347888888888888877553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.1e-07 Score=70.65 Aligned_cols=92 Identities=9% Similarity=-0.019 Sum_probs=61.7
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (415)
....+.+.|++++|+..|++..+..|.+...|..+..++...|++++|...|++.++.. +.+..+|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34456666777777777777666666666677777777777777777777777766653 34445666667777777777
Q ss_pred HHHHHHHHHHHhc
Q 014978 166 EKAATTLKEMEKR 178 (415)
Q Consensus 166 ~~a~~~~~~~~~~ 178 (415)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=1.6e-05 Score=64.06 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCCcCcHHHHHHHHhhcCCCCHhHHHHH
Q 014978 45 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLW 120 (415)
Q Consensus 45 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l 120 (415)
|..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+...... .+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 4445555555556666666666666665544 33344444444443 33444454444444332 222333333
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCC
Q 014978 121 LAACAS----QNDKETAEKAFLELKKTK 144 (415)
Q Consensus 121 ~~~~~~----~~~~~~a~~~~~~~~~~g 144 (415)
...+.. ..+.+.|...++...+.|
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh
Confidence 333222 334555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=9.2e-08 Score=74.14 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=57.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014978 112 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL 191 (415)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (415)
|+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 445555555566666666666666666655553 3445556666666666666666666666665542 22355556666
Q ss_pred HHHHcCCChHHHHHHHHHHHH
Q 014978 192 SLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~ 212 (415)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=1.3e-07 Score=73.29 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=64.6
Q ss_pred CCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014978 78 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS 157 (415)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 157 (415)
|+...+......+.+.|++++|+..|++..+..|.+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444555556666666777777777766666566666667777777777777777777777766552 234556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014978 158 LYIKMELPEKAATTLKEMEK 177 (415)
Q Consensus 158 ~~~~~~~~~~a~~~~~~~~~ 177 (415)
+|.+.|++++|+..|+++.+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777766654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.66 E-value=6.3e-05 Score=61.97 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=73.4
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHH
Q 014978 43 RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 122 (415)
Q Consensus 43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (415)
|+..--..++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 343334455566666777777777766432 25566666666666666666665442 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHH
Q 014978 123 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 202 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 202 (415)
.+........+ .+...+...++.....++..|-..|.+++...+++..... -.++...++.++..|++.+ .++
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH
Confidence 66665554332 2222333345555566677777777777777777766543 1445556666777666643 334
Q ss_pred HHHHH
Q 014978 203 VLRIW 207 (415)
Q Consensus 203 a~~~~ 207 (415)
..+.+
T Consensus 151 l~e~l 155 (336)
T d1b89a_ 151 MREHL 155 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.61 E-value=1.9e-07 Score=64.50 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=32.3
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHH
Q 014978 54 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 133 (415)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (415)
.+.+.|++++|+..|++..+.. +-++.+|..+..++.+.|++++|+..|++..+..|.+..+|..+..+|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 3333444444444444433332 112333333333334444444444444433333333333344444444444444444
Q ss_pred HHHHH
Q 014978 134 EKAFL 138 (415)
Q Consensus 134 ~~~~~ 138 (415)
.+.++
T Consensus 104 ~~~l~ 108 (112)
T d1hxia_ 104 LASLR 108 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=1.6e-07 Score=64.91 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=53.3
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 014978 86 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 165 (415)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (415)
+...+.+.|++++|+..|++..+..|.+..+|..+..++.+.|++++|+..|++..+.. +.+...+..+..+|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 44455556666666666666655555566666666666666666666666666665553 33455566666666666666
Q ss_pred HHHHHHHHHH
Q 014978 166 EKAATTLKEM 175 (415)
Q Consensus 166 ~~a~~~~~~~ 175 (415)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1e-06 Score=61.49 Aligned_cols=102 Identities=9% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCC-HHHHHHHHH
Q 014978 259 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPD-HRLITAAYN 334 (415)
Q Consensus 259 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 334 (415)
.++..+...+++++|.+.|+..+..+. .+..++..+..++.+.++ +++|+.++++++. ....|+ ...+..+..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~--~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh--ccCCchHHHHHHHHHH
Confidence 455566666666777777766666432 255566666666655443 3356666666655 111122 124556666
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHH
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIY 363 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (415)
+|.+.|++++|++.|+++.+..|.+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence 67777777777777777777666655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=7.8e-07 Score=62.09 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 014978 120 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP---EKAATTLKEMEKRTCRKN-RVAYSSLLSLYT 195 (415)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 195 (415)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+++++...+..|+ ..+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3334444444444444444444433 23334444444444433222 234444444443321111 113334444444
Q ss_pred cCCChHHHHHHHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~ 212 (415)
+.|++++|++.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 44444444444444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.3e-08 Score=86.87 Aligned_cols=225 Identities=11% Similarity=0.004 Sum_probs=110.5
Q ss_pred HHHHHHHhcCcCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCCcCcHHHHHHHHh
Q 014978 30 ARENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELK 107 (415)
Q Consensus 30 ~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (415)
+|.+.|+++....|+ +.++..+..++...|++++| |+++...+ |+. ..++... .+. ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHH-HHHHHHHHHHHHHhc
Confidence 466677766655453 55666677777777777765 56665432 221 1111111 111 112344556666555
Q ss_pred hc-CCCCHhHHHH-H-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 014978 108 KN-TSPDVVTYNL-W-LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 184 (415)
Q Consensus 108 ~~-~~~~~~~~~~-l-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 184 (415)
+. ..++..-... + .......+.++.++..+....+.. +++...+..+...+.+.|+.++|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 43 2222221111 1 112223344555555444443332 3344566677777777888888877776655431 13
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 014978 185 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 264 (415)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (415)
.++..+...+...+++++|...|++..+..+. +...|+.+...+...|+..+|...|.+..... +|...++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 45666777888888888888888888775433 55678888888888888888888888877654 45666777776666
Q ss_pred Hhc
Q 014978 265 INR 267 (415)
Q Consensus 265 ~~~ 267 (415)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.1e-06 Score=61.94 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.+......+.+.|++++|...|.+............ . .-......+ -..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~-~-------------~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-N-------------EEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-S-------------HHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc-h-------------HHHhhhchh-------HHHHHHHHHHHHH
Confidence 445556677888888888888887776422111100 0 000011111 1235667778888
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+.|++++|+..++.++.. -+.+...+..+..+|...|++++|...|+.+.+.+|.+..+...+.....+.+
T Consensus 74 k~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhc---cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998872 23477888888889999999999999999999988887777766666554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.3e-06 Score=62.32 Aligned_cols=62 Identities=6% Similarity=-0.122 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+|+.+..+|.+.|++++|+..++..++.. |.++.++..+..+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555555555555555555555442 234445555555555555555555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.8e-07 Score=82.11 Aligned_cols=229 Identities=15% Similarity=0.027 Sum_probs=127.7
Q ss_pred cHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 98 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-SYSTLTSLYIKMELPEKAATTLKEME 176 (415)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 176 (415)
+|.+.|++..+..|....++..+..++...+++++| |++++.. .|+.. .++...... ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHHHHHHHhc
Confidence 577888887765555667778888888888888776 6777655 23211 121111111 112456677777766
Q ss_pred hcCCCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCC
Q 014978 177 KRTCRKNRVAYSSLLSL--YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 254 (415)
Q Consensus 177 ~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 254 (415)
+....++..-....... ....+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+........ .
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---Q 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH---H
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---H
Confidence 54333333222222111 122344455554444443322 22445677777788888999998888777655331 2
Q ss_pred chHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHH
Q 014978 255 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 334 (415)
Q Consensus 255 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 334 (415)
.++..+...+...|++++|...|++..+..+ -+...|+.+...+...|+..+|+..|.+++. -.+|-...+..|..
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~---~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIA---VKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS---SSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Confidence 4677788889999999999999999988532 2557899999999999999999999999987 34677788888887
Q ss_pred HHHHcCC
Q 014978 335 KLEEQGD 341 (415)
Q Consensus 335 ~~~~~g~ 341 (415)
.+.+..+
T Consensus 229 ~~~~~~~ 235 (497)
T d1ya0a1 229 ALSKALE 235 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 7765543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.6e-06 Score=59.41 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=24.5
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 141 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (415)
...+.+.|++++|+..|++..+..|.+..++..+..+|.+.|++++|+..+++++
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444444344444444444444444444444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=2.5e-05 Score=56.83 Aligned_cols=127 Identities=13% Similarity=-0.064 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.+..-...+.+.|++.+|...|.++...-....... .......... ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~-------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKN-------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence 455566677788888888888887765321110000 0000000000 02246777888999
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 370 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (415)
+.|++++|++.++.+++ .-+.+...|..+..++...|++++|...|++..+.+|.+..+...+-.+.
T Consensus 79 ~l~~~~~Al~~~~~al~---~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccc---ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999988 23557889999999999999999999999999999998887776665443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3e-06 Score=59.85 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=45.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCH-------hHHHHHHH
Q 014978 50 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV-------VTYNLWLA 122 (415)
Q Consensus 50 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~ 122 (415)
.+...+.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|++.++++.+..|.+. .+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443 22344444455555555555555555555433211111 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 014978 123 ACASQNDKETAEKAFLELKKT 143 (415)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~ 143 (415)
.+...+++++|+..|++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 555566666666666665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.24 E-value=1.8e-05 Score=59.16 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-----hCCCCCCHHHHHHH
Q 014978 327 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM--PLIIVERMQ-----KDNVQMDAETQKVL 399 (415)
Q Consensus 327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~m~-----~~~~~p~~~t~~~l 399 (415)
..+..+..++...|++++|...++++....|.+...|..++.+|.+.|+. |+..|+++. +.|+.|+..|-.+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~ 147 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 147 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999 577777764 47999999988777
Q ss_pred HHhccC
Q 014978 400 KITSEM 405 (415)
Q Consensus 400 ~~~~~~ 405 (415)
..+...
T Consensus 148 ~~il~~ 153 (179)
T d2ff4a2 148 ERILRQ 153 (179)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.23 E-value=1.1e-05 Score=58.90 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 014978 116 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 178 (415)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 178 (415)
+|+.+..+|.+.|++++|+..+++.++.. +.+..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555556666666666666666655553 334455556666666666666666666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=6.8e-06 Score=61.21 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=47.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014978 113 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 192 (415)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 192 (415)
+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|+..|+...+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44456666666666666666666666666653 3455566666666666666666666666666652 234444444443
Q ss_pred H
Q 014978 193 L 193 (415)
Q Consensus 193 ~ 193 (415)
+
T Consensus 154 ~ 154 (169)
T d1ihga1 154 V 154 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=7.7e-06 Score=60.80 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
...|..+.+.|++.+|+..|+.+...-+.... ...+. ......+. ...|+.+..+|.+.|+
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~-----------~~~~~-~~~~~~~~-------~~~~~Nla~~~~~l~~ 79 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG-----------LSEKE-SKASESFL-------LAAFLNLAMCYLKLRE 79 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-----------CCHHH-HHHHHHHH-------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-----------cchhh-hhhcchhH-------HHHHHhHHHHHHHhhh
Confidence 45677888899999999988776543111000 00000 00111111 1245567777788888
Q ss_pred cCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHH
Q 014978 96 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE-KAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~ 174 (415)
+++|+..++...+..|.+..+|..+..++...|++++|...|+++.+.. |.+......+-.+..+.+... ...+++..
T Consensus 80 ~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~ 158 (168)
T d1kt1a1 80 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYAN 158 (168)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888888888777778888888888888888888888888888888764 345555555555544444333 23344444
Q ss_pred H
Q 014978 175 M 175 (415)
Q Consensus 175 ~ 175 (415)
|
T Consensus 159 ~ 159 (168)
T d1kt1a1 159 M 159 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.20 E-value=9.9e-06 Score=60.66 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 014978 82 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK-----TKIDPDWI 150 (415)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~ 150 (415)
.+..+...+...|++++|+..++++.+..|.+...|..++.++.+.|+.++|++.|+++.+ .|+.|+..
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 3445555566666666666666666555566666666666666666666666666665532 35555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.16 E-value=2.1e-06 Score=62.04 Aligned_cols=105 Identities=11% Similarity=-0.030 Sum_probs=55.4
Q ss_pred HHHhhhhHHHHHHHHhcCcCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 22 QAQALQTRARENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 22 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
+-+.+.+++|++.|+.+....| ++.++..+..++...+++..+.+- .+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHHH
Confidence 3455666777777777666655 455666666666544433322221 12233455
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 014978 101 QMLQELKKNTSPDVVTYNLWLAACASQN-----------DKETAEKAFLELKKTKIDPDWISYS 153 (415)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~ 153 (415)
..|++..+..|.+..+|..+..+|...| .++.|.+.|++..+. .|+...|.
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 5555555555556666666665555443 245555555555554 34444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=4.8e-05 Score=56.30 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 014978 221 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 300 (415)
Q Consensus 221 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 300 (415)
.+......+.+.|++.+|...|.+....-...... .. ........+ ....|..+..+|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~-------------~~-~~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------SE-KESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CH-HHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc-------------ch-hhhhhcchh-------HHHHHHhHHHHHH
Confidence 45566667777788888888777655421110000 00 000000111 1235666777888
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 374 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (415)
+.|++++|+..++.++.. -+.+...|..+..++...|++++|...|+++.+..|.+..+...+-......+
T Consensus 76 ~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 899999999999998872 35577888888888999999999999999999888888777776666555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=3.8e-05 Score=56.96 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHH
Q 014978 222 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYL 300 (415)
Q Consensus 222 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 300 (415)
+......+...|++++|...|.++.+.. ............ .. +.| ....|..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~-------~~--~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG-------AK--LQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH-------GG--GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH-------HH--hChhhHHHHHHHHHHHH
Confidence 4455566677788888877777654321 000000010000 00 112 3456777888899
Q ss_pred hcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014978 301 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 371 (415)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (415)
+.|++++|+..+.++++. -+.+...|..+..++...|++++|...|+++.+..|.+..+...+..+..
T Consensus 89 ~~~~~~~Ai~~~~~al~~---~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhh---hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999872 34567889999999999999999999999999998888877777766554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0017 Score=53.24 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 95 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (415)
-..|-.+.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+...+.+...
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH
Confidence 3344455689999999999987665 688889999999999998887644 245688888888888765
Q ss_pred cCcHHHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014978 96 LDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKE 174 (415)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 174 (415)
...+ .+... ...+......++..|-..|.+++...+++...... .++...++.++..|++.+ .++..+.+..
T Consensus 85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 5332 22222 34466667789999999999999999999887542 567778899999998864 3444444433
Q ss_pred HHhcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 014978 175 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 209 (415)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (415)
... .-| ...++..|.+.+-++++.-++.+
T Consensus 158 ~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 158 FWS---RVN---IPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp HST---TSC---HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccc---cCC---HHHHHHHHHHcCChHHHHHHHHh
Confidence 211 112 22344555555555554444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.01 E-value=3.9e-06 Score=67.19 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=19.9
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 142 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (415)
|++++|+..+++..+..|.|...+..++..++..|++++|...++...+
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444443333333444444444444444444444444444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.95 E-value=6.8e-06 Score=65.79 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=63.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 014978 125 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 204 (415)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 204 (415)
.+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 45566666666666666653 4455666666666666666666666666666542 222334444444443333344333
Q ss_pred HHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 014978 205 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 248 (415)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 248 (415)
.-.......+.+++...+......+...|+.++|...+.++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32221111111122223333444555666666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=2.4e-05 Score=56.35 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=38.3
Q ss_pred CCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 014978 94 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ----------NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 163 (415)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (415)
+.+++|+..|+...+..|.+..++..+..++... +.+++|+..|++.++.. +.+..+|..+..+|...|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcc
Confidence 3355555555555555555555555555555433 23456666676666653 345556666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00017 Score=47.26 Aligned_cols=80 Identities=14% Similarity=-0.002 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccC---CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHH
Q 014978 289 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 364 (415)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (415)
...+-.+...+.+.|+++.|+..|+++++.... ..++ ..++..+..++.+.|++++|+..++++.+..|.++.+++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344456777888889999999988888763211 1122 467888889999999999999999999999888887776
Q ss_pred HHHH
Q 014978 365 SLLR 368 (415)
Q Consensus 365 ~l~~ 368 (415)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.55 E-value=0.001 Score=48.11 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCC-
Q 014978 121 LAACASQNDKETAEKAFLELKKTKI-DP----------DWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCRKN- 183 (415)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~g~-~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~- 183 (415)
...+...|++++|+..|++.++... .| ....|+.+..+|.+.|++++|...+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344555666666666666654310 01 1235556666666666666666666655431 00111
Q ss_pred ----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 184 ----RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 184 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
...++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11344455556666666666666665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.0011 Score=47.97 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=56.7
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhcCC-CCC----------HHHHHHHHHHHHcCCChHHHHHHHHHHHHccc--
Q 014978 151 SYSTL--TSLYIKMELPEKAATTLKEMEKRTC-RKN----------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-- 215 (415)
Q Consensus 151 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 215 (415)
+|..+ ...+.+.|++++|++.|++..+... .|+ ...|+.+..+|.+.|++++|...+++.+....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4456667888888888887765311 011 24566777777777777777777776654311
Q ss_pred ---ccC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 014978 216 ---KMN-----DAEYTCVISSLVKLGEFEKAENIYDEWES 247 (415)
Q Consensus 216 ---~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 247 (415)
.++ ...+..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11344555666666666666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00069 Score=44.21 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcCcCCC-------C-cchHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 014978 16 YRQRVAQAQALQTRARENFFENLPDKMR-------G-PDTCSALLHSYVQNKKSAEAEALMEKMSE 73 (415)
Q Consensus 16 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-------~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 73 (415)
|..|..+.+.|+++.|+..|+++.+..| + ..+++.+..++.+.|++++|++.++++++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 4444444455555555554444433211 0 12344444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.87 E-value=0.022 Score=39.41 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHhcC
Q 014978 60 KSAEAEALMEKMSECG 75 (415)
Q Consensus 60 ~~~~a~~~~~~~~~~~ 75 (415)
|+++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.64 E-value=0.05 Score=37.43 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHH----c
Q 014978 268 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----Q 339 (415)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 339 (415)
.+.++|.+++++..+.| ++.....|...|.. ..+.++|.++|+++.+ .+ ++.....|...|.. .
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~--~g---~~~a~~~Lg~~y~~G~gv~ 108 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG--LN---DQDGCLILGYKQYAGKGVV 108 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc--cC---cchHHHHHHHHHHcCCccC
Confidence 34455555555555543 23333334444433 3345666666666655 22 23334444444443 3
Q ss_pred CChhHHHHHHHHHHHcCC
Q 014978 340 GDIDGAEHLLVTLRNAGH 357 (415)
Q Consensus 340 g~~~~a~~~~~~~~~~~~ 357 (415)
.+.++|.++|++..+.|.
T Consensus 109 ~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 456666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.40 E-value=0.063 Score=35.74 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 014978 115 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 180 (415)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 180 (415)
..++..++.+.++|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++.+++.++-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344455566666677777677777665544 56666666677777777777777777777666664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.22 Score=33.27 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHhHhcccCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHH
Q 014978 286 KPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 361 (415)
Q Consensus 286 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (415)
.|+..+--...+++++..+ .++++.++++..+. .+.+. ..+..|..+|.+.|+++.|++.++.+.+..|.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 3455555566666665543 45777788777662 22233 45566777788888888888888888888777654
Q ss_pred H
Q 014978 362 I 362 (415)
Q Consensus 362 ~ 362 (415)
+
T Consensus 109 A 109 (124)
T d2pqrb1 109 V 109 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.72 Score=39.07 Aligned_cols=350 Identities=11% Similarity=-0.022 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHH--HHhcCcHHHHHHHHHHHHhcCCCCCcccH----HHH
Q 014978 13 AQSYRQRVAQAQALQTRARENFFENLPDKMRGPDTCSALLHS--YVQNKKSAEAEALMEKMSECGFLKCPLPY----NHM 86 (415)
Q Consensus 13 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l 86 (415)
...|..+....+.|+...+.++...+.+ .| ...|-..-.. ........+...++++ . |+...- ...
T Consensus 7 r~~y~~a~~a~~~~~~~~~~~~~~~L~d-yp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~---p~~P~~~~lr~~~ 78 (450)
T d1qsaa1 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKD-YP-LYPYLEYRQITDDLMNQPAVTVTNFVRA---N---PTLPPARTLQSRF 78 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTT-ST-THHHHHHHHHHHTGGGCCHHHHHHHHHH---C---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhhcC-CC-CHHHHHHHHHHhccccCCHHHHHHHHHH---C---CCChhHHHHHHHH
Confidence 4467888889999999999999988854 34 3334333222 2234455555444433 2 333222 223
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---------
Q 014978 87 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTS--------- 157 (415)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--------- 157 (415)
+..+.+.++++..+..+ ...|.+...-...+.+....|+.+.|...+..+-..| ......+..+..
T Consensus 79 l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 79 VNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCC
Confidence 45566666655433322 2245566655667777778888877777766665444 112222222333
Q ss_pred ---------HHHhcCCHHHHHHHHHHHHhc-----------------------CCCCCHHHHHHHHHHHHc--CCChHHH
Q 014978 158 ---------LYIKMELPEKAATTLKEMEKR-----------------------TCRKNRVAYSSLLSLYTN--MGYKDEV 203 (415)
Q Consensus 158 ---------~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~--~~~~~~a 203 (415)
.....|++..|..++..+... ...++......+..++.+ ..+++.+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a 233 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENA 233 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHH
Confidence 333334444444433321110 011121111112222221 2355666
Q ss_pred HHHHHHHHHcccccChhhHHHH----HHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHH
Q 014978 204 LRIWKKMMSLFAKMNDAEYTCV----ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 279 (415)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 279 (415)
..++......... +......+ .......+..+.+...+......+ .+.......+......+++..+...++.
T Consensus 234 ~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~ 310 (450)
T d1qsaa1 234 RLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (450)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHh
Confidence 6666665543222 22222211 122223455566666666554432 2333444455556667788888888877
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcc----------cCCCC-----------CHH----HHHHHHH
Q 014978 280 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV----------RKWVP-----------DHR----LITAAYN 334 (415)
Q Consensus 280 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~p-----------~~~----~~~~l~~ 334 (415)
+.... .-...-.--+..++...|+.+.|...|..+.... .|.++ ... .-..-+.
T Consensus 311 l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~ 389 (450)
T d1qsaa1 311 LPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVR 389 (450)
T ss_dssp SCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHH
T ss_pred cCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHH
Confidence 65321 1122333345677778888888888887765410 00000 000 0112345
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCcHHHH
Q 014978 335 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIV 381 (415)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~ 381 (415)
.+...|....|...+..+... .++.....+.....+.|.+..+|.
T Consensus 390 ~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~ 434 (450)
T d1qsaa1 390 ELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQ 434 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHH
Confidence 566778888888888877653 245566677777777787755553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.34 Score=32.18 Aligned_cols=139 Identities=18% Similarity=0.100 Sum_probs=74.4
Q ss_pred cCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHH
Q 014978 196 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 275 (415)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 275 (415)
..|..++..+++.+..... +..-|+.++--....-+-+...+.++.+-+. .|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 3466666666666655432 3334555554444445555555555554331 111 11222222222
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 014978 276 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 355 (415)
Q Consensus 276 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 355 (415)
.+-.+- .+...+...+..+..+|+-++-.++++...+ .-+|++.....+..+|.+.|...++-+++.++-+.
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k---n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 221111 1334455556666677777777777776554 34566677777777777777777777777777776
Q ss_pred CCC
Q 014978 356 GHV 358 (415)
Q Consensus 356 ~~~ 358 (415)
|..
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.72 E-value=0.43 Score=29.90 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=33.1
Q ss_pred HHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCHHHHHHHH
Q 014978 307 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 367 (415)
Q Consensus 307 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 367 (415)
+..+-++.+.. ..+.|++....+.+.+|.+.+++..|.++|+-++..--.+...|..++
T Consensus 24 e~rrgmN~l~~--~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44444555544 456666666666666666666666666666666543322233444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.64 E-value=0.57 Score=29.37 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHH
Q 014978 269 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 333 (415)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 333 (415)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++....+ ..++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K---~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCcHHHHHHHH
Confidence 44466677777777777788888888888888888888888888776652 223334444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=2.7 Score=35.35 Aligned_cols=310 Identities=8% Similarity=0.010 Sum_probs=167.8
Q ss_pred HHHHhhhhHHHHHHHHhcCcCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcCcHH
Q 014978 21 AQAQALQTRARENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVP 100 (415)
Q Consensus 21 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (415)
.+++.++++..+..+. ..+++...-.....+....|+.+.|...+..+-..| ...+..+..+...+...|.+....
T Consensus 81 ~L~~~~~w~~~~~~~~---~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt~~~ 156 (450)
T d1qsaa1 81 ELARREDWRGLLAFSP---EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA 156 (450)
T ss_dssp HHHHTTCHHHHHHHCC---SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhccCHHHHHHhcc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCCHHH
Confidence 4466666666554442 221244445566777777888888887777766555 234445566666555555443221
Q ss_pred HHHHHHh---------------hcCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c
Q 014978 101 QMLQELK---------------KNTSPDV-VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK--M 162 (415)
Q Consensus 101 ~~~~~~~---------------~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~ 162 (415)
++..+. ...+++. ......+.... +...+.... ... .++......+..++.+ .
T Consensus 157 -~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~ 227 (450)
T d1qsaa1 157 -YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAVAFASVAR 227 (450)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHHHHHHHhc
Confidence 111111 1111111 11222222211 111111111 111 2233333333333333 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHcCCChHHHHHHHHHHHHcccccChhhHHHHHHHHHhcCChHHH
Q 014978 163 ELPEKAATTLKEMEKRTCRKNRVAYSS----LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 238 (415)
Q Consensus 163 ~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 238 (415)
.+.+.+...+....... ..+...+.. +.......+..+.+...+......+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 56777888887776543 222222222 22233345666777777776655432 334444455556677888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCcHHHHHHHHHHHHhC------------CCCC----------CHhHH----
Q 014978 239 ENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK------------GIKP----------CYTTW---- 292 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~p----------~~~~~---- 292 (415)
...+..+.... .....-.--+..++...|+.+.|...|..+... |.++ ....+
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence 88887764321 112333455778888888888888888876432 1110 00011
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhHhcccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014978 293 -ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 352 (415)
Q Consensus 293 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 352 (415)
..-+..+...|....|...|..+.. . .+......+.....+.|.++.|+....+.
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~---~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVK---S--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh---C--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 1234567788999999999988876 2 35566677788889999999999776655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=1.1 Score=29.72 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 014978 166 EKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 212 (415)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 212 (415)
++++.+++++.+.+ +.+ ...+..+.-+|.+.|++++|.+.++.+++
T Consensus 55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34455555544432 112 12333444445555555555555555544
|