Citrus Sinensis ID: 014979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEcccccccEEEcEEccccccEEEEEEEEccccccEEEEEEccccccccccccccccEEccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEEEccccEEEEccccEEEEEccccccccccccccEEEEEEEEEcccEEEEEEcccccHHHHHHHHHHccccccccc
ccHHHHHHHHHHHHccccccccccEEEccccccccccccccHHccccccHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEccccccEEEEEcccccccccEEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEccccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFKSIVRELKEMRdgigsksrrgveagkhwhsrkqthiapdqallssdssqhslwanlppELLLDIVRRVEesetswpaRAVVVFCASVCRTWREVTKEIVqtpeqcgrltfpislkqpgphespiqcfirrdrgtstyhlcfglvpsedgsDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVgklrsnflgtkftiydsqppcdmtiqptggmsrrfhskqvsprlpaynyriGSISYELNVlrtrgprrmncimdtipfssieeggaaptptsfaqsfdeqffsftslkgkepityssspspslslastpgspqplalknkaprWHEQLQCWCLNFRGRVTVASVKNFQLVAavepshnvplaeQEKVILQFGkigkdiftmdyhyplSAFQAFAICLssfdtkpace
MSFKSIVRELkemrdgigsksrrgveagkhwHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEEsetswparavVVFCASVCRTWREVTKeivqtpeqcgrltfpislkqpgphESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLaandfsrasnsyVGKLRSNFLGTkftiydsqppcDMTIQPTGGMSRRFHSkqvsprlpaynyriGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVepshnvplaeQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYssspspslslastpgspQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
******************************************************LWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQ*****SPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDM*******************RLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSS********************FF***************************************PRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSF*******
*SFKSIVRELKE**********************************************LPPELLLDI****************VVF***************************PISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPP*************************AYNYRIGSISYELNVL***G*****C************************************************************PQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQ****************EKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
MSFKSIVRELKEMRDGIG******************THIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKE*********************QPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
*********LKE*RDGIGSKSRRGVE**************************HSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPC******************VSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPT*F*************************************SPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEP*******EQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPAC*
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MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q6Z2G9428 Tubby-like F-box protein yes no 0.997 0.967 0.650 1e-152
Q8GVE5394 Tubby-like F-box protein yes no 0.944 0.994 0.634 1e-145
Q2QXB2445 Tubby-like F-box protein no no 0.985 0.919 0.545 1e-129
Q10LG8403 Tubby-like F-box protein no no 0.968 0.997 0.562 1e-126
Q8H485406 Tubby-like F-box protein no no 0.973 0.995 0.558 1e-125
Q8VY21406 Tubby-like F-box protein no no 0.975 0.997 0.555 1e-123
Q75HX5445 Tubby-like F-box protein no no 0.990 0.923 0.523 1e-121
Q53PP5440 Tubby-like F-box protein no no 0.987 0.931 0.525 1e-121
Q9FRH7445 Tubby-like F-box protein no no 0.983 0.916 0.539 1e-121
Q0WPY0413 Tubby-like F-box protein no no 0.867 0.871 0.560 1e-120
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function desciption
 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/429 (65%), Positives = 317/429 (73%), Gaps = 15/429 (3%)

Query: 1   MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAP------------DQALLSS 48
           MS KSIVREL+EMRDGIGS SRR  +           H  P             Q     
Sbjct: 1   MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQE 60

Query: 49  DSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQC 108
              Q   WANLPPELLLD+++RVE SE +WPAR  VV CA+VCR+WREVTKE+V+T E+C
Sbjct: 61  HQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120

Query: 109 GRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSEDG-SDKLLLAARKIRRAT 167
           GR+TFPISLKQPGP E P+QCF+RRDR TSTY L  GL PS  G +DKLLLAARKIRRAT
Sbjct: 121 GRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRAT 180

Query: 168 CTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQ 227
            T FVISL +NDFS +S++YVGKL+ NFLGTKFTI+DSQPPCD  + P    S+R H KQ
Sbjct: 181 RTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKR-HFKQ 239

Query: 228 VSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDE 287
           VSPRLP  NY + ++SYEL VLR RGPRRM C M +IP   I+EGG APTPT    S DE
Sbjct: 240 VSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDE 299

Query: 288 QFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQ-PLALKNKAPRWHEQLQCWCLNFRGR 346
           Q  + ++ KGKEP    SS S S  L+    + + PL LKNKAPRWHEQLQCWCLNFRGR
Sbjct: 300 QVPALSTSKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFRGR 359

Query: 347 VTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLS 406
           VTVASVKNFQLVA+V+PS  +P AEQEKVILQFGKIGKDIFTMDY YPLSAFQAFAICL+
Sbjct: 360 VTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLT 419

Query: 407 SFDTKPACE 415
           SFDTKPACE
Sbjct: 420 SFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q0WPY0|TLP6_ARATH Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
255561112414 phosphoric diester hydrolase, putative [ 0.995 0.997 0.778 0.0
225430726413 PREDICTED: tubby-like F-box protein 5-li 0.995 1.0 0.775 0.0
356496747415 PREDICTED: tubby-like F-box protein 5-li 0.997 0.997 0.740 1e-178
356538200414 PREDICTED: tubby-like F-box protein 5-li 0.995 0.997 0.735 1e-177
357483493416 Tubby-like F-box protein [Medicago trunc 0.995 0.992 0.734 1e-176
224097020416 f-box family protein [Populus trichocarp 0.997 0.995 0.738 1e-175
358248100414 uncharacterized protein LOC100777506 [Gl 0.997 1.0 0.725 1e-175
449457532414 PREDICTED: tubby-like F-box protein 5-li 0.997 1.0 0.739 1e-175
302399097414 TLP domain class transcription factor [M 0.995 0.997 0.733 1e-174
356503004423 PREDICTED: tubby-like F-box protein 2-li 0.997 0.978 0.725 1e-172
>gi|255561112|ref|XP_002521568.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223539246|gb|EEF40839.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/416 (77%), Positives = 361/416 (86%), Gaps = 3/416 (0%)

Query: 1   MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLP 60
           MS KSIVREL+EM+DGIGS SRRGVE GKHW  R ++HIAPD+    S+  Q   WANLP
Sbjct: 1   MSLKSIVRELREMKDGIGSISRRGVE-GKHWRGRTRSHIAPDETPPDSEPIQQGQWANLP 59

Query: 61  PELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQP 120
           PELLLDI+RRVEESET WPARAVVV+CA VCR+WREVTKEIV+TPEQCGRLTFPISLKQP
Sbjct: 60  PELLLDIIRRVEESETLWPARAVVVYCALVCRSWREVTKEIVKTPEQCGRLTFPISLKQP 119

Query: 121 GPHESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDF 180
           GP ESPIQCFIRR+  TSTY L +GLVPSE+ SDKLLLAARKIRRATCTDF++SLAA+DF
Sbjct: 120 GPRESPIQCFIRRETATSTYLLYYGLVPSENESDKLLLAARKIRRATCTDFIVSLAADDF 179

Query: 181 SRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIG 240
           SRASN+YVGKLRSNFLGTKFT++DSQP C++ IQP     RRFHS+QVSP+LPA NY IG
Sbjct: 180 SRASNTYVGKLRSNFLGTKFTVFDSQPTCEVPIQPASRTHRRFHSRQVSPKLPACNYSIG 239

Query: 241 SISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTS-LKGKE 299
           +I+YELNVLRTRGPRRM+C++ +IP SSIEEGG APTPTSF+++FD+ + SF+S  KGKE
Sbjct: 240 TITYELNVLRTRGPRRMHCVLHSIPVSSIEEGGTAPTPTSFSETFDD-WLSFSSGSKGKE 298

Query: 300 PITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA 359
            +   SS SPS S     GS +PL LKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA
Sbjct: 299 SVFDVSSASPSESPVIIHGSGEPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA 358

Query: 360 AVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
           AV PSHNVP AEQEKVILQFGKIGKDIFTMDY YPLSAFQAFAICLSSFDTKPACE
Sbjct: 359 AVGPSHNVPAAEQEKVILQFGKIGKDIFTMDYCYPLSAFQAFAICLSSFDTKPACE 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430726|ref|XP_002265804.1| PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496747|ref|XP_003517227.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356538200|ref|XP_003537592.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|357483493|ref|XP_003612033.1| Tubby-like F-box protein [Medicago truncatula] gi|355513368|gb|AES94991.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224097020|ref|XP_002310813.1| f-box family protein [Populus trichocarpa] gi|222853716|gb|EEE91263.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248100|ref|NP_001239813.1| uncharacterized protein LOC100777506 [Glycine max] gi|255646239|gb|ACU23604.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449457532|ref|XP_004146502.1| PREDICTED: tubby-like F-box protein 5-like [Cucumis sativus] gi|449499981|ref|XP_004160969.1| PREDICTED: tubby-like F-box protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302399097|gb|ADL36843.1| TLP domain class transcription factor [Malus x domestica] gi|302399105|gb|ADL36847.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356503004|ref|XP_003520303.1| PREDICTED: tubby-like F-box protein 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.860 0.802 0.515 2.3e-131
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.944 0.994 0.629 3.9e-131
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.701 0.639 0.518 2.1e-113
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.867 0.871 0.563 2.9e-110
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.971 0.939 0.487 1.9e-99
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.884 0.965 0.516 3.3e-95
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.669 0.733 0.430 2.4e-91
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.845 0.902 0.505 1.2e-90
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.202 0.166 0.516 1.7e-36
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.202 0.166 0.516 1.7e-36
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 916 (327.5 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 200/388 (51%), Positives = 259/388 (66%)

Query:     1 MSFKSIVRELKEMRDGIGSKSRRGVE-------AGKHWHSRKQTHIAPDQALLSSDSSQH 53
             MSF+ IV++L   RDG GS SRR  +        GK   S  + + +  + LLS    Q 
Sbjct:     1 MSFRGIVQDL---RDGFGSLSRRSFDFRLSSLHKGKAQGSSFREY-SSSRDLLSPVIVQT 56

Query:    54 SLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTF 113
             S WANLPPELL D+++R+EESE++WPAR  VV CASVCR+WR + +EIV  PE CG+LTF
Sbjct:    57 SRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTF 116

Query:   114 PISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPS---EDGSDKLLLAARKIRRATCTD 170
             P+SLKQPGP ++ IQCFI+RD+   T+HL   L P+   E+G  K LL+A++ RR T T+
Sbjct:   117 PVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENG--KFLLSAKRTRRTTRTE 174

Query:   171 FVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQP--TGGMSR-RFHSKQ 227
             ++IS+ A++ SR+SNSY+GKLRSNFLGTKF +YD+QPP + +     T   SR RFHS++
Sbjct:   175 YIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRR 234

Query:   228 VSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPT-PTSFAQ--- 283
             VSP++P+ +Y I  I+YELNVL TRGPRRM+CIM++IP SS+E GG+ P  P        
Sbjct:   235 VSPKVPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPY 294

Query:   284 SFDEQF---FSFT-SLKGKEPITYXXXXXXXXXXX----XXXXXXQPLALKNKAPRWHEQ 335
             S D+ F    SF+ S      + +                     +PL LKNK PRWHEQ
Sbjct:   295 SLDDSFRSNISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQ 354

Query:   336 LQCWCLNFRGRVTVASVKNFQLVAAVEP 363
             LQCWCLNFRGRVTVASVKNFQLVAA +P
Sbjct:   355 LQCWCLNFRGRVTVASVKNFQLVAARQP 382
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GVE5TLP2_ARATHNo assigned EC number0.63460.94450.9949yesno
Q6Z2G9TLP5_ORYSJNo assigned EC number0.65030.99750.9672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0019021002
f-box family protein (416 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
pfam01167243 pfam01167, Tub, Tub family 1e-106
PLN02727 986 PLN02727, PLN02727, NAD kinase 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  313 bits (805), Expect = e-106
 Identities = 120/293 (40%), Positives = 158/293 (53%), Gaps = 53/293 (18%)

Query: 120 PGPHESPIQCFIRRDRGTSTYHLCFGL---VPSEDGSDKLLLAARKIRRATCTDFVISLA 176
           P P    +QC I RD+    Y L       +  E+G  K LLAARK +R+  ++++ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 177 ANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYN 236
             D SR+ + Y+GKLRSNFLGTKFT++D+                   ++ V+P++ +  
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQ-------------KARLVTPKVASGR 107

Query: 237 YRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLK 296
             + ++ YE NVL  RGPR+M  IM  IP SS E     P     +     Q       K
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIP-SSHERVPIQPLNDQESLLSRWQ------NK 160

Query: 297 GKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQ 356
            KE                       L L NKAPRW++QLQ + LNF GRVT ASVKNFQ
Sbjct: 161 NKES---------------------LLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQ 199

Query: 357 LVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFD 409
           +V A +P         + ++LQFG++ KD+FTMDY YPLSAFQAFAICLSSFD
Sbjct: 200 IVHASDP---------DYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.76
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.78
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.54
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.3
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.18
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.66
KOG2997366 consensus F-box protein FBX9 [General function pre 88.02
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-127  Score=949.30  Aligned_cols=353  Identities=51%  Similarity=0.823  Sum_probs=304.4

Q ss_pred             CchhhhhhhhhhcccCcccccccccccccccccCcccccCCccccccCCcccCCccCCCCHHHHHHHHHHhhhcCCCCCc
Q 014979            1 MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPA   80 (415)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~se~~wp~   80 (415)
                      |++++++++   +++..      +++......+++. +...++.. .+.....+.|++||||||+|+|+|+||+|+.||+
T Consensus         1 ~~~~~~~~~---~~~~~------~~~~~~~~~~~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~   69 (355)
T KOG2502|consen    1 MGEDGPVRD---PEDKS------SFRAPQGSGTKGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPS   69 (355)
T ss_pred             CCccCccCC---CCccc------chhcccccccccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccc
Confidence            789999998   66655      4444333222222 11122110 1111122899999999999999999999999999


Q ss_pred             cceeeeecccchhHHHHHHHhhcCccccccccccccccCCCCCCCcEEEEEEEecCCceEEEEeccCCCCC--CCCcEEE
Q 014979           81 RAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSED--GSDKLLL  158 (415)
Q Consensus        81 r~~vv~ca~vc~~wr~~~~eiv~~pe~~gk~tFpisLkqPgPrd~~iQCfIkR~k~~~tY~LYL~l~~~~~--e~~KfLL  158 (415)
                      |++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+++.  |++||||
T Consensus        70 r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLL  149 (355)
T KOG2502|consen   70 RRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLL  149 (355)
T ss_pred             ccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998843  7799999


Q ss_pred             EEeeeccCCceeEEEEccCCccccCccceeeeeeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCccee
Q 014979          159 AARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYR  238 (415)
Q Consensus       159 aArK~rr~ttS~YiISld~~dlSr~S~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~e  238 (415)
                      ||||+||+||+|||||+|++||||++++||||||||||||||||||+|.          +.+|+++      ++|+++|+
T Consensus       150 aark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~----------~~~r~~~------~~~~~~~~  213 (355)
T KOG2502|consen  150 AARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGV----------NPSRRFN------KVPSGRQE  213 (355)
T ss_pred             eeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCC----------Ccccccc------cCCcccce
Confidence            9999999999999999999999999999999999999999999999972          2234444      58999999


Q ss_pred             EEEEEEeecccCCCCCceeEEeecCCCcccccCCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCC
Q 014979          239 IGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPG  318 (415)
Q Consensus       239 la~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~  318 (415)
                      ||+|+||+||||+||||||+|+||+||.++  ++|++|.|++..+.     ..+.  +.                 .+..
T Consensus       214 la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~-----~~l~--r~-----------------~~k~  267 (355)
T KOG2502|consen  214 LAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHP-----SLLF--RS-----------------QNKD  267 (355)
T ss_pred             eeEEEEeeccccccCCceeEEeccCCCCCC--CCCccccccccccc-----chhh--hc-----------------cccC
Confidence            999999999999999999999999999987  89999988653211     0110  10                 1223


Q ss_pred             CCCceEeecCCCccccccccEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHH
Q 014979          319 SPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAF  398 (415)
Q Consensus       319 ~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~aSVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~  398 (415)
                      ++++++|+||.|+|||++||||||||||||+||||||||||.         .++++|||||||||||+|||||+||||||
T Consensus       268 ~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYrYPlSa~  338 (355)
T KOG2502|consen  268 KEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYRYPLSAF  338 (355)
T ss_pred             cccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeecccCccHHH
Confidence            689999999999999999999999999999999999999998         56799999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccCC
Q 014979          399 QAFAICLSSFDTKPACE  415 (415)
Q Consensus       399 QAFaI~LssfdtKlACE  415 (415)
                      |||||||||||+|||||
T Consensus       339 QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  339 QAFAICLSSFDTKLACE  355 (355)
T ss_pred             HHHHHHHHhccccccCC
Confidence            99999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 1e-43
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 3e-43
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 6e-43
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 4e-37
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 1e-34
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 154/300 (51%), Gaps = 53/300 (17%)
Query: 119 QPGPHESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISL 175
           +P P    I+C I RD+       +   F  +  EDG    LLA RK +++  ++++IS+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 176 AANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAY 235
              D SR  +SY+GKLRSN +GTKFT+YD+       + P    S    S  +   L A 
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN------GVNPQKASSSTLESGTLRQELAA- 136
Query: 236 NYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSL 295
                 + YE NVL  +GPR+M+ I   +P  ++     +  P    ++  E   +    
Sbjct: 137 ------VCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQN 183
Query: 296 KGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 355
           K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNF
Sbjct: 184 KNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNF 222
Query: 356 QLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
           Q++   +P +         +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct: 223 QIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 2e-88
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 2e-86
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 4e-05
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  268 bits (686), Expect = 2e-88
 Identities = 92/300 (30%), Positives = 140/300 (46%), Gaps = 53/300 (17%)

Query: 117 LKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPS-EDGSDKLLLAARKIRRATCTDFVISL 175
           + +P P    ++C + RD+      +        +      LLA RK +R+   +++IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 176 AANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAY 235
              + SR   +++GKLRSN LG +FT++D+                    +  S  + + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQN---------------PQRGYSTNVASL 133

Query: 236 NYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSL 295
              + ++ YE NVL  RGPRRM  I+   P  S E       P + +     ++ +    
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNASDGLLVRWQN---- 186

Query: 296 KGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNF 355
                                      + L NK P W++    + LNF+GRVT ASVKNF
Sbjct: 187 ---------------------KTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 225

Query: 356 QLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415
           Q+V A +P +         ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K ACE
Sbjct: 226 QIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.09
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.92
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.78
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.58
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.93
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.8
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.74
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 91.97
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.87
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-89  Score=667.32  Aligned_cols=242  Identities=38%  Similarity=0.693  Sum_probs=184.6

Q ss_pred             ccCCCCCCCcEEEEEEEecCCc------eEEEEeccCCCCCCCCcEEEEEeeeccCCceeEEEEccCCccccCccceeee
Q 014979          117 LKQPGPHESPIQCFIRRDRGTS------TYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGK  190 (415)
Q Consensus       117 LkqPgPrd~~iQCfIkR~k~~~------tY~LYL~l~~~~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~~yVGK  190 (415)
                      |+||+|+|+++||+|+|||+|+      +|||||+     .++++|||||||+|+++++||+||+|++||||++++||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK  103 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK  103 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence            9999999999999999999984      9999994     4678999999999999999999999999999999999999


Q ss_pred             eeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCcceeEEEEEEeecccCCCCCceeEEeecCCCccccc
Q 014979          191 LRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIE  270 (415)
Q Consensus       191 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~  270 (415)
                      |||||+||+|+|||+|++++.               ..+|.++.+++|||+|+||+||||++|||+|+|+||.+   . +
T Consensus       104 LrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~-~  164 (276)
T 2fim_A          104 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A  164 (276)
T ss_dssp             EEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C-T
T ss_pred             EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence            999999999999999955431               13566778899999999999999999999999998753   1 2


Q ss_pred             CCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCCCCCceEeecCCCccccccccEEeccCCccccc
Q 014979          271 EGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVA  350 (415)
Q Consensus       271 ~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~a  350 (415)
                      .|+..|.+.   ...++++  +         .++          .+...+++++|+||+|+|||++|||||||+||||+|
T Consensus       165 ~~~~~~~~p---~~~~~~l--l---------~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a  220 (276)
T 2fim_A          165 ENERVPIRP---RNASDGL--L---------VRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA  220 (276)
T ss_dssp             TSCBCCCCC---SSTTCSH--H---------HHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred             CCCEecccC---CCccccc--c---------hhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence            333333221   0011111  0         000          012457889999999999999999999999999999


Q ss_pred             ccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014979          351 SVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE  415 (415)
Q Consensus       351 SVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  415 (415)
                      ||||||||++         +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       221 SvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          221 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9999999998         6778999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 6e-96
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 0.001
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  286 bits (733), Expect = 6e-96
 Identities = 97/302 (32%), Positives = 149/302 (49%), Gaps = 53/302 (17%)

Query: 117 LKQPGPHESPIQCFIRRDRGTSTYHLC---FGLVPSEDGSDKLLLAARKIRRATCTDFVI 173
             +P P    I+C I RD+      +    F  +  EDG    LLA RK +++  ++++I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 174 SLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLP 233
           S+   D SR  +SY+GKLRSN +GTKFT+YD+                   +   +    
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQ-------------KASSSTLESG 120

Query: 234 AYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFT 293
                + ++ YE NVL  +GPR+M+ I+  +             P +  ++   ++ +  
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCI---RPRNEHETLLARWQN-- 175

Query: 294 SLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVK 353
             K  E                       + L+NK P W++  Q + LNF GRVT ASVK
Sbjct: 176 --KNTE---------------------SIIELQNKTPVWNDDTQSYVLNFHGRVTQASVK 212

Query: 354 NFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 413
           NFQ++   +P         + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K A
Sbjct: 213 NFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLA 263

Query: 414 CE 415
           CE
Sbjct: 264 CE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.01
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.94
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.81
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.74
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-85  Score=631.08  Aligned_cols=246  Identities=38%  Similarity=0.674  Sum_probs=205.2

Q ss_pred             ccCCCCCCCcEEEEEEEecCCc------eEEEEeccCCCCCCCCcEEEEEeeeccCCceeEEEEccCCccccCccceeee
Q 014979          117 LKQPGPHESPIQCFIRRDRGTS------TYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGK  190 (415)
Q Consensus       117 LkqPgPrd~~iQCfIkR~k~~~------tY~LYL~l~~~~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~~yVGK  190 (415)
                      |.||||+|++|||+|+|||+++      +|+|||+.+   .++++|||||||+|+++++|||||+|++|+||+|++||||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGK   90 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGK   90 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEE
Confidence            9999999999999999999876      689998643   2456799999999999999999999999999999999999


Q ss_pred             eeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCcceeEEEEEEeecccCCCCCceeEEeecCCCccccc
Q 014979          191 LRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIE  270 (415)
Q Consensus       191 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~  270 (415)
                      |||||+||+|+|||+|++++.++..             ++.....++|||+|+||+||||+||||+|+|+||.|+.....
T Consensus        91 lrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~  157 (265)
T d1c8za_          91 LRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHER  157 (265)
T ss_dssp             EEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTSCB
T ss_pred             eeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCccccc
Confidence            9999999999999999766544321             112234578999999999999999999999999987532110


Q ss_pred             CCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCCCCCceEeecCCCccccccccEEeccCCccccc
Q 014979          271 EGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVA  350 (415)
Q Consensus       271 ~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~a  350 (415)
                            .          .+.+..  .......++          .+...+++++|+||+|+||++++||+|||+|||++|
T Consensus       158 ------~----------~~~p~~--~~~~~~~~~----------~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~  209 (265)
T d1c8za_         158 ------V----------CIRPRN--EHETLLARW----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA  209 (265)
T ss_dssp             ------C----------CCCCSS--TTSSHHHHH----------HTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEEC
T ss_pred             ------c----------ccCCCC--cchhhhHHh----------hccCcccceEEecCCCeeeccCCEEEeccCCEEecc
Confidence                  0          011110  000000000          123567899999999999999999999999999999


Q ss_pred             ccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014979          351 SVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE  415 (415)
Q Consensus       351 SVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  415 (415)
                      ||||||||++         ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       210 SvKNFql~~~---------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         210 SVKNFQIIHG---------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             BTTEEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             ccceEEEEeC---------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            9999999987         6778999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure