Citrus Sinensis ID: 014987

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
cEEccccccccccccccccccccccHHHHHHHHHHHHHcEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHcccccEEEEccccccccccccHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEcccccccccccccccccccccccccccccEEEccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccEEccccEEEEccccEEEEEEEEcccccEEEEcccccEEEcccEEEEEEcccccEEEEEEEEEEEEc
cccccccccccccccccccccHcccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccEEEHHccccccccEEEEEcccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccEEEEEcccEEEEcccccEEEEEEEEcccccccEEEccccccccccccccccccEEEccHHcccccEEEEEEEEEEcccccccEEEEEEEcccccccccHHHHcccEEEEEccccEEEEEEEEccHHHHEEEcccccEEEccccEEEEEcccccEEEEEEEEEEEEc
mrlgmfdgepsaqpfgnlgprdvctpAHQQLALQAAHQGIVLLKNsartlplstlrhhtvavigpnsdvTVTMIGNYAgvacgyttplqgISRYAKTIHQAgcfgvacngnqLIGAAEVAARQADATVLVMGLDQSIEAEFIDRaglllpgrQQELVSRVAKASRGPVVLVLMCggpvdvsfakndprigailwvgypgqaggAAIADVLFgranpggklpmtwypqdyvsrlpmtdmrmraargypgrtyrfykgpvvfpfghgmsytTFAHTlskapnqfsvpiatslyafknttisSNAIRVAHTNCNDAMSLGLHvdikntgdmagtHTLLvfakppagnwspnkqligfkKVHVTAGALQSVRLDIHVckhlsvvdkfgirripmgehslhigdlkHSISLQANLEGIKF
MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTvavigpnsdVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGehslhigdlkhsislqanlegikf
MRLGMFDGEPSAQPFGNLGPRDVCTPahqqlalqaahqGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
**********************VCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI***********
MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*RLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
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MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
P83344461 Putative beta-D-xylosidas N/A no 0.995 0.895 0.757 0.0
Q9FGY1774 Beta-D-xylosidase 1 OS=Ar yes no 0.983 0.527 0.702 1e-164
Q94KD8768 Probable beta-D-xylosidas no no 0.980 0.529 0.645 1e-159
A5JTQ2774 Beta-xylosidase/alpha-L-a N/A no 0.968 0.519 0.530 1e-125
Q9FLG1784 Beta-D-xylosidase 4 OS=Ar no no 0.968 0.512 0.545 1e-123
A5JTQ3774 Beta-xylosidase/alpha-L-a N/A no 0.966 0.518 0.524 1e-121
Q9LXD6773 Beta-D-xylosidase 3 OS=Ar no no 0.966 0.518 0.529 1e-119
Q9LJN4781 Probable beta-D-xylosidas no no 0.942 0.500 0.475 1e-105
Q9SGZ5767 Probable beta-D-xylosidas no no 0.937 0.507 0.463 1e-102
Q9LXA8792 Probable beta-D-xylosidas no no 0.978 0.512 0.436 5e-99
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/416 (75%), Positives = 351/416 (84%), Gaps = 3/416 (0%)

Query: 1   MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTV 60
           MRLGMFDGEPSA  +GNLGPRDVCTPAHQQLAL+AA QGIVLL+N  R+LPLST RH TV
Sbjct: 46  MRLGMFDGEPSAHQYGNLGPRDVCTPAHQQLALEAARQGIVLLENRGRSLPLSTRRHRTV 105

Query: 61  AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVA 120
           AVIGPNSDVTVTMIGNYAGVACGYTTPLQGI RY +TIHQAGC  V CNGNQL GAAE A
Sbjct: 106 AVIGPNSDVTVTMIGNYAGVACGYTTPLQGIGRYTRTIHQAGCTDVHCNGNQLFGAAEAA 165

Query: 121 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180
           ARQADATVLVMGLDQSIEAEF+DRAGLLLPG QQELVSRVA+ASRGP +LVLM GGP+DV
Sbjct: 166 ARQADATVLVMGLDQSIEAEFVDRAGLLLPGHQQELVSRVARASRGPTILVLMSGGPIDV 225

Query: 181 SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRM 240
           +FAKNDPRI AI+WVGYPGQAGG AIA+VLFG ANPGGKLPMTWYPQ+YV+ LPMTDM M
Sbjct: 226 TFAKNDPRISAIIWVGYPGQAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAM 285

Query: 241 RA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTI 298
           RA  ARGYPGRTYRFY GPVVFPFG G+SYTTFAH L+  P   SVP+ TSL A  N+T+
Sbjct: 286 RADPARGYPGRTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPTLVSVPL-TSLKATANSTM 344

Query: 299 SSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH 358
            S  +RV+H +CN    L +HVD+KNTG M GTHTLLVF  PP G W+ +KQL+GF K+H
Sbjct: 345 LSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIH 404

Query: 359 VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIK 414
           +  G+ + VR+ +HVCKHLSVVD+FGIRRIP+GEH L IGDL H +SLQ NL  IK
Sbjct: 405 IATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQTNLGEIK 460
May be involved in cell wall metabolism, related to senescence.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
183579871 769 arabinofuranosidase [Citrus unshiu] 0.966 0.521 0.953 0.0
224111912 768 predicted protein [Populus trichocarpa] 0.987 0.533 0.793 0.0
189380221 767 beta xylosidase [Camellia sinensis] 0.992 0.537 0.774 0.0
157041199 774 beta-D-xylosidase [Pyrus pyrifolia] 0.995 0.533 0.748 0.0
65736613 774 alpha-L-arabinofuranosidase / beta-D-xyl 0.995 0.533 0.746 0.0
224099193 755 predicted protein [Populus trichocarpa] 0.980 0.539 0.776 0.0
298364130 774 alpha-L-arabinofuranosidase/beta-D-xylos 0.995 0.533 0.741 0.0
225431898 770 PREDICTED: beta-D-xylosidase 1-like [Vit 0.992 0.535 0.760 1e-180
86553064 772 beta xylosidase [Fragaria x ananassa] 0.992 0.533 0.751 1e-180
30316196461 RecName: Full=Putative beta-D-xylosidase 0.995 0.895 0.757 1e-180
>gi|183579871|dbj|BAG28345.1| arabinofuranosidase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/408 (95%), Positives = 394/408 (96%), Gaps = 7/408 (1%)

Query: 1   MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTV 60
           MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTV
Sbjct: 355 MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTV 414

Query: 61  AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVA 120
           AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGC GVACNGNQLIGAAEVA
Sbjct: 415 AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCLGVACNGNQLIGAAEVA 474

Query: 121 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180
           ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV
Sbjct: 475 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 534

Query: 181 SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRM 240
           SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYV+RLPMTDMRM
Sbjct: 535 SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVARLPMTDMRM 594

Query: 241 RAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISS 300
           RA RGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISS
Sbjct: 595 RAGRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISS 654

Query: 301 NAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVT 360
           NAIRVAHTNCNDAMSLGLHVD+KNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVT
Sbjct: 655 NAIRVAHTNCNDAMSLGLHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVT 714

Query: 361 AGALQSVRLDIHVCKHLSVVDKFGIRRIP-------MGEHSLHIGDLK 401
           AGALQSVRLDIHVCKHLSVVDKFGIRRIP       +G  S+H+   K
Sbjct: 715 AGALQSVRLDIHVCKHLSVVDKFGIRRIPWVNIVSILGISSIHLSSSK 762

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111912|ref|XP_002316021.1| predicted protein [Populus trichocarpa] gi|222865061|gb|EEF02192.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|189380221|gb|ACD93208.1| beta xylosidase [Camellia sinensis] Back     alignment and taxonomy information
>gi|157041199|dbj|BAF79669.1| beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|65736613|dbj|BAD98523.1| alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|224099193|ref|XP_002311398.1| predicted protein [Populus trichocarpa] gi|222851218|gb|EEE88765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|298364130|gb|ADI79208.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|225431898|ref|XP_002276351.1| PREDICTED: beta-D-xylosidase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|86553064|gb|AAS17751.2| beta xylosidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|30316196|sp|P83344.1|XYNB_PRUPE RecName: Full=Putative beta-D-xylosidase; AltName: Full=PpAz152 gi|19879972|gb|AAM00218.1|AF362990_1 beta-D-xylosidase, partial [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
UNIPROTKB|P83344461 P83344 "Putative beta-D-xylosi 0.995 0.895 0.733 5.4e-166
TAIR|locus:2157994774 BXL1 "beta-xylosidase 1" [Arab 0.983 0.527 0.681 7.6e-151
TAIR|locus:2196060768 BXL2 "beta-xylosidase 2" [Arab 0.980 0.529 0.628 6.1e-142
TAIR|locus:2174809784 XYL4 "beta-D-xylosidase 4" [Ar 0.968 0.512 0.528 6.1e-110
TAIR|locus:2144756773 BXL3 "AT5G09730" [Arabidopsis 0.966 0.518 0.516 9.2e-107
TAIR|locus:2029391767 AT1G78060 [Arabidopsis thalian 0.937 0.507 0.443 5.5e-93
TAIR|locus:2091236781 AT3G19620 [Arabidopsis thalian 0.942 0.500 0.463 3e-92
TAIR|locus:2142434792 AT5G10560 [Arabidopsis thalian 0.978 0.512 0.422 3.7e-87
ASPGD|ASPL0000048081803 xlnD [Emericella nidulans (tax 0.944 0.488 0.337 1.3e-50
UNIPROTKB|Q5BAS1803 xlnD "Exo-1,4-beta-xylosidase 0.944 0.488 0.337 1.3e-50
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
 Score = 1615 (573.6 bits), Expect = 5.4e-166, P = 5.4e-166
 Identities = 305/416 (73%), Positives = 340/416 (81%)

Query:     1 MRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 60
             MRLGMFDGEPSA  +GNLGPRDVCTP            GIVLL+N  R+LPLST RH TV
Sbjct:    46 MRLGMFDGEPSAHQYGNLGPRDVCTPAHQQLALEAARQGIVLLENRGRSLPLSTRRHRTV 105

Query:    61 AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVA 120
             AVIGPNSDVTVTMIGNYAGVACGYTTPLQGI RY +TIHQAGC  V CNGNQL GAAE A
Sbjct:   106 AVIGPNSDVTVTMIGNYAGVACGYTTPLQGIGRYTRTIHQAGCTDVHCNGNQLFGAAEAA 165

Query:   121 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180
             ARQADATVLVMGLDQSIEAEF+DRAGLLLPG QQELVSRVA+ASRGP +LVLM GGP+DV
Sbjct:   166 ARQADATVLVMGLDQSIEAEFVDRAGLLLPGHQQELVSRVARASRGPTILVLMSGGPIDV 225

Query:   181 SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRM 240
             +FAKNDPRI AI+WVGYPGQAGG AIA+VLFG ANPGGKLPMTWYPQ+YV+ LPMTDM M
Sbjct:   226 TFAKNDPRISAIIWVGYPGQAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAM 285

Query:   241 RA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTI 298
             RA  ARGYPGRTYRFY GPVVFPFG G+SYTTFAH L+  P   SVP+ TSL A  N+T+
Sbjct:   286 RADPARGYPGRTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPTLVSVPL-TSLKATANSTM 344

Query:   299 SSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH 358
              S  +RV+H +CN    L +HVD+KNTG M GTHTLLVF  PP G W+ +KQL+GF K+H
Sbjct:   345 LSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIH 404

Query:   359 VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIK 414
             +  G+ + VR+ +HVCKHLSVVD+FGIRRIP+GEH L IGDL H +SLQ NL  IK
Sbjct:   405 IATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQTNLGEIK 460
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=TAS
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000048081 xlnD [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BAS1 xlnD "Exo-1,4-beta-xylosidase xlnD" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P83344XYNB_PRUPE3, ., 2, ., 1, ., -0.75720.99510.8958N/Ano
Q9FGY1BXL1_ARATH3, ., 2, ., 1, ., 5, 50.70280.98310.5271yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0551
hypothetical protein (768 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.3327000301
Predicted protein (63 aa)
  •     0.461
fgenesh4_pg.C_LG_IX000155
hypothetical protein (242 aa)
  •     0.461

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
PLN03080779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 1e-147
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 5e-66
PRK15098765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 1e-45
pfam1431071 pfam14310, Fn3-like, Fibronectin type III-like dom 2e-10
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 6e-06
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  437 bits (1125), Expect = e-147
 Identities = 192/418 (45%), Positives = 272/418 (65%), Gaps = 12/418 (2%)

Query: 1   MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTV 60
           +RLG+FDG+P    +G LGP +VCT  H++LAL+AA QGIVLLKN  + LPL+     ++
Sbjct: 364 LRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSL 423

Query: 61  AVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEV 119
           A+IGP ++    + G+Y GV C  TT  +G+  Y  KT   AGC  V+CN +   G A  
Sbjct: 424 AIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIA 483

Query: 120 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 179
            A++AD  V+V GLD S E E  DR  LLLPG+Q +L+S VA  S+ PVVLVL  GGPVD
Sbjct: 484 IAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVD 543

Query: 180 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMR 239
           VSFAK DPRI +ILW+GYPG+ GG A+A+++FG  NPGG+LPMTWYP+ + + +PMTDM 
Sbjct: 544 VSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMN 602

Query: 240 MRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVP--IATSLYAFKN 295
           MRA  +RGYPGRTYRFY G VV+ FG+G+SYT F++ +  AP + S+         + K 
Sbjct: 603 MRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKP 662

Query: 296 TTISSNAIRVAHTN----CNDAMSLGLHVDIKNTGDMAGTHTLLVFAK-PPAGNWSPNKQ 350
                + +          C +++   +H+ + N G+M G+H +++F++ PP     P KQ
Sbjct: 663 LLQRRDELDYVQIEDIASC-ESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQ 721

Query: 351 LIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 408
           L+GF +VH  +G      + +  CKHLSV ++ G R +P+G+H L +GDL+HS+S++ 
Sbjct: 722 LVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779

Length = 779
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
PLN03080779 Probable beta-xylosidase; Provisional 100.0
PRK15098765 beta-D-glucoside glucohydrolase; Provisional 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 100.0
PF1431071 Fn3-like: Fibronectin type III-like domain; PDB: 3 99.85
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 97.51
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.87
PF1269082 BsuPI: Intracellular proteinase inhibitor; InterPr 96.15
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.74
PRK13202104 ureB urease subunit beta; Reviewed 92.69
PRK13203102 ureB urease subunit beta; Reviewed 92.29
PF14874102 PapD-like: Flagellar-associated PapD-like 91.46
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 91.17
TIGR00192101 urease_beta urease, beta subunit. In a number of s 90.32
PRK13205162 ureB urease subunit beta; Reviewed 89.83
PRK13204159 ureB urease subunit beta; Reviewed 89.5
COG1470 513 Predicted membrane protein [Function unknown] 89.48
PRK13201136 ureB urease subunit beta; Reviewed 88.23
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 88.21
PRK13198158 ureB urease subunit beta; Reviewed 86.54
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 85.21
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 84.7
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 84.46
PRK13986225 urease subunit alpha; Provisional 83.38
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 83.2
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 82.92
PRK13192208 bifunctional urease subunit gamma/beta; Reviewed 82.36
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 81.22
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-86  Score=712.19  Aligned_cols=406  Identities=47%  Similarity=0.884  Sum_probs=334.9

Q ss_pred             CccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccccC
Q 014987            1 MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGV   80 (415)
Q Consensus         1 ~~lGlfd~~p~~~~~~~~~~~~v~~~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~g~   80 (415)
                      ||+||||.+|...+|.......+++++|+++|+++|++|||||||++++|||++.+.++|+||||+++....++|+|++.
T Consensus       364 ~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~  443 (779)
T PLN03080        364 LRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGV  443 (779)
T ss_pred             HHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCC
Confidence            58999994343445555556778999999999999999999999999999998765579999999999888778888888


Q ss_pred             CCcccCHHHHHhhhc-ceeeeeccCccccCCccchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHH
Q 014987           81 ACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR  159 (415)
Q Consensus        81 ~~~~~t~~~~l~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~  159 (415)
                      +++..+++++|+++. .+.|..||....+.+...++++++++++||+|||++|.+...++|+.||.+|.||+.|.+||++
T Consensus       444 ~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~  523 (779)
T PLN03080        444 PCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISS  523 (779)
T ss_pred             CCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHH
Confidence            888899999999875 3568888754333344567889999999999999999998899999999999999999999999


Q ss_pred             HHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCChhHHHHHHHHhhcCCCCCccCCeeeccccccCCCCccccc
Q 014987          160 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMR  239 (415)
Q Consensus       160 la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~~~g~AladvL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~  239 (415)
                      +++++++|||||+++|+|++|.|+.+.++++|||++|+||+++|+|+||||||++|||||||+||||+++ .++|++|++
T Consensus       524 va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~  602 (779)
T PLN03080        524 VASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMN  602 (779)
T ss_pred             HHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccC
Confidence            9976667899999999999999986567899999999999999999999999999999999999989887 789998887


Q ss_pred             ccc--cCCCCCcccccCCCCcccccCcCCCCCCeeecccccCCCcccccc---ccccccc--cccccccceeccc-cCCC
Q 014987          240 MRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIA---TSLYAFK--NTTISSNAIRVAH-TNCN  311 (415)
Q Consensus       240 ~~~--~~~~~~~~Yr~~~~~~lypFG~GLSYt~F~ys~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-~~~~  311 (415)
                      +++  ..+|++++||||+.+|+||||||||||+|+|++++++........   .....-.  ..........+.. ..|+
T Consensus       603 ~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (779)
T PLN03080        603 MRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCE  682 (779)
T ss_pred             cccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccccccccccccccccccccccccccccCC
Confidence            754  345888999999999999999999999999999875421111000   0000000  0000000000000 1123


Q ss_pred             CceeEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecC
Q 014987          312 DAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPM  390 (415)
Q Consensus       312 ~~~~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~  390 (415)
                      .. .++|+|+|||||+++|+||||||+++|... .+|.|+|+||+||.|+|||+++|+|+|+.+++|++||..+.|++++
T Consensus       683 ~~-~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~  761 (779)
T PLN03080        683 SL-RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPL  761 (779)
T ss_pred             Cc-eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeC
Confidence            22 489999999999999999999999999876 7999999999999999999999999999657999999999999999


Q ss_pred             eEEEEEEeCCCceEEEEE
Q 014987          391 GEHSLHIGDLKHSISLQA  408 (415)
Q Consensus       391 G~~~~~vg~~~~~~~~~~  408 (415)
                      |+|+|+||+++|+++|++
T Consensus       762 G~y~l~vG~~~~~~~~~~  779 (779)
T PLN03080        762 GDHVLMLGDLEHSLSIEI  779 (779)
T ss_pred             ccEEEEEeCCccceEEeC
Confidence            999999999999998864

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13204 ureB urease subunit beta; Reviewed Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>PRK13198 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PRK13986 urease subunit alpha; Provisional Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
3ac0_A845 Crystal Structure Of Beta-Glucosidase From Kluyvero 5e-27
3abz_A845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 1e-26
3zyz_A713 Crystal Structure Of A Glycoside Hydrolase Family 3 5e-16
4i8d_A714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 5e-16
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 1e-15
2x40_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 3e-14
2x42_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 3e-14
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 100 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 159
           QAG      +  ++  AAE+AA+  D  VL++GL+   E E  DR  + LP R  ELV  
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 160 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 219
           V KA+   V+ V   G PV+  + ++     A++   Y G   G AIADVL+G   P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 220 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 272
           L ++W P          + +    R   G      YR+Y+     V FPFG+G+SYTTF 
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 273 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 331
             +S                FK   ++ + I ++             VD+KNTGD  AG+
Sbjct: 725 LDISD---------------FK---VTDDKIAIS-------------VDVKNTGDKFAGS 753
Query: 332 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 389
             + V+        S P K+L GF+KVH+  G  ++V +D+ +   +S   ++ G   + 
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 390 MGEHSLHIG 398
            GE+ + +G
Sbjct: 814 AGEYLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 1e-76
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 6e-58
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 4e-57
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 2e-13
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 3e-52
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
 Score =  251 bits (642), Expect = 1e-76
 Identities = 96/456 (21%), Positives = 153/456 (33%), Gaps = 95/456 (20%)

Query: 2   RLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVA 61
               F     +               H ++A +A  +G+VLL+N    LPLS      +A
Sbjct: 306 NAPSFKNYRYSNKPD--------LEKHAKVAYEAGAEGVVLLRNE-EALPLSENS--KIA 354

Query: 62  VIGPNSDVTVTMIGNYAGVACGYT-TPLQGISRYAKTIHQAGCFGVACNGN--------- 111
           + G     T+            Y  + L+GI        +                    
Sbjct: 355 LFGTGQIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYK 414

Query: 112 ------------------QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAG----LLL 149
                                      A++ D  V+V+        E  DR        L
Sbjct: 415 PRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIVISRISG---EGYDRKPVKGDFYL 471

Query: 150 PGRQQELVSRVAKASRG---PVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAI 206
              + +L+  V++        V+++L  G PV+V   ++      IL V   GQ  G  +
Sbjct: 472 SDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRDLV--DGILLVWQAGQETGRIV 529

Query: 207 ADVLFGRANPGGKLPMTW------YPQDYVSRLPMTDMRMRAARGYPGRTYRFY---KGP 257
           ADVL GR NP GKLP T+       P       P  + +           YR+Y      
Sbjct: 530 ADVLTGRINPSGKLPTTFPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVE 589

Query: 258 VVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG 317
             + FG+G+SYTTF                     + +  +S            D  +L 
Sbjct: 590 PAYEFGYGLSYTTFE--------------------YSDLNVSF-----------DGETLR 618

Query: 318 LHVDIKNTGDMAGTHTLLVFAKPPAGNWS-PNKQLIGFKKVHV-TAGALQSVRLDIHVCK 375
           +   I+NTG  AG     V+ K P G    P ++L  F K  +   G  + V L+I V +
Sbjct: 619 VQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPV-R 677

Query: 376 HLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLE 411
            L+  +      +  GE+ + +G    +I L+    
Sbjct: 678 DLASFNG-EEWVVEAGEYEVRVGASSRNIKLKGTFS 712
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 98.81
3idu_A127 Uncharacterized protein; all beta-protein, structu 97.38
2l0d_A114 Cell surface protein; structural genomics, northea 96.84
2kut_A122 Uncharacterized protein; structural genomics, PSI- 96.33
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 94.13
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 92.21
2x3c_A 343 Toxic extracellular endopeptidase; hydrolase; 1.99 89.98
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 89.97
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 89.97
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 89.75
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 88.92
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 87.81
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 87.38
1yew_A382 Particulate methane monooxygenase, B subunit; memb 87.0
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 85.94
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 84.52
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 84.23
3qga_A225 UREA2, fusion of urease beta and gamma subunits; i 80.26
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-80  Score=670.86  Aligned_cols=363  Identities=30%  Similarity=0.441  Sum_probs=303.0

Q ss_pred             CccC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccc
Q 014987            1 MRLG----MFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGN   76 (415)
Q Consensus         1 ~~lG----lfd~~p~~~~~~~~~~~~v~~~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~   76 (415)
                      ||+|    +|| +|+.++    ....+++++|+++|+++|++|||||||++++|||++  .++|+||||+++....++|+
T Consensus       283 ~~~g~l~~~~~-~p~~~~----~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp~A~~~~~~Ggg  355 (845)
T 3abz_A          283 KFVVDNLEKTG-IVENGP----ESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGPNAKAKTSSGGG  355 (845)
T ss_dssp             HHHHHTHHHHC-CCTTCC----CCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEESTTTSCCCCSCBS
T ss_pred             HHhCCcccccc-CCccCc----cccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcCCcchhhccCCC
Confidence            4678    899 665332    123488999999999999999999999999999985  36999999999987766655


Q ss_pred             cc-cCCCcccCHHHHHhhhcc--eeeeeccCcc------------------------------------c----------
Q 014987           77 YA-GVACGYTTPLQGISRYAK--TIHQAGCFGV------------------------------------A----------  107 (415)
Q Consensus        77 ~~-g~~~~~~t~~~~l~~~~~--~~~~~g~~~~------------------------------------~----------  107 (415)
                      ++ ..+.+.++++++|+++..  +.|..||...                                    .          
T Consensus       356 s~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  435 (845)
T 3abz_A          356 SASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVT  435 (845)
T ss_dssp             TTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSEEE
T ss_pred             ccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCcccCcccccceeee
Confidence            54 356788999999987632  3444433100                                    0          


Q ss_pred             --------------------------------------------------------------------------------
Q 014987          108 --------------------------------------------------------------------------------  107 (415)
Q Consensus       108 --------------------------------------------------------------------------------  107 (415)
                                                                                                      
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~  515 (845)
T 3abz_A          436 KVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKER  515 (845)
T ss_dssp             EECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBCCE
T ss_pred             eccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCcccc
Confidence                                                                                            


Q ss_pred             -----------------c------------------------CC-ccchHHHHHHhhcCCEEEEEcCCCcccccccCCCC
Q 014987          108 -----------------C------------------------NG-NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRA  145 (415)
Q Consensus       108 -----------------~------------------------~~-~~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~  145 (415)
                                       .                        .+ ...+++|+++|+++|+|||++|.+..+|+|+.||.
T Consensus       516 ~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~  595 (845)
T 3abz_A          516 TKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRE  595 (845)
T ss_dssp             EEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCS
T ss_pred             eeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCCcc
Confidence                             0                        00 01256778899999999999999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCChhHHHHHHHHhhcCCCCCccCCeeec
Q 014987          146 GLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWY  225 (415)
Q Consensus       146 ~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~~~g~AladvL~G~~nPsGkLPvT~~  225 (415)
                      +|.||+.|.+||+++++. ++|||||+++|+|++|+|+   ++++|||++|+|||++|+|+||||||++|||||||+|| 
T Consensus       596 ~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~---~~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T~-  670 (845)
T 3abz_A          596 NMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWL---EDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-  670 (845)
T ss_dssp             SSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTG---GGCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSCB-
T ss_pred             cccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcch---hccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCceee-
Confidence            999999999999999974 6899999999999999987   48999999999999999999999999999999999997 


Q ss_pred             cccccCCCCccc-ccccc-cCCCCC---cccccCC---CCcccccCcCCCCCCeeec--ccccCCCcccccccccccccc
Q 014987          226 PQDYVSRLPMTD-MRMRA-ARGYPG---RTYRFYK---GPVVFPFGHGMSYTTFAHT--LSKAPNQFSVPIATSLYAFKN  295 (415)
Q Consensus       226 p~~~~~~~p~~~-~~~~~-~~~~~~---~~Yr~~~---~~~lypFG~GLSYt~F~ys--~~~~~~~~~~~~~~~~~~~~~  295 (415)
                      |++. +++|.++ +.... ...|.+   .+||||+   .+|+||||||||||||+|+  ++++.                
T Consensus       671 p~~~-~d~P~~~~~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~----------------  733 (845)
T 3abz_A          671 PFKL-QDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT----------------  733 (845)
T ss_dssp             CSSG-GGSTTTTSCSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC----------------
T ss_pred             eCch-hhCCccccCCCCCCceeccCCccCCCcchhcCCCceeecccCCCcceeEEEeccccccc----------------
Confidence            8887 7788542 21100 111221   3699997   5899999999999999999  98741                


Q ss_pred             ccccccceeccccCCCCceeEEEEEEEEeCC-CCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeC-
Q 014987          296 TTISSNAIRVAHTNCNDAMSLGLHVDIKNTG-DMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIH-  372 (415)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~vsv~V~NtG-~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~-  372 (415)
                                 +     . .++|+|+||||| +++|+||||||+++|.++ .+|.|+|+||+||.|+||||++|+|+|+ 
T Consensus       734 -----------~-----~-~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~  796 (845)
T 3abz_A          734 -----------D-----D-KIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLEL  796 (845)
T ss_dssp             -----------S-----S-EEEEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECTTCEEEEEEEEEH
T ss_pred             -----------C-----C-eEEEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECCCCEEEEEEEeCC
Confidence                       1     1 589999999999 999999999999999887 8999999999999999999999999999 


Q ss_pred             CCCCeeEEeCC-CCEEecCeEEEEEEeCCCceEEEEEEe
Q 014987          373 VCKHLSVVDKF-GIRRIPMGEHSLHIGDLKHSISLQANL  410 (415)
Q Consensus       373 ~~~~ls~~d~~-~~~~~~~G~~~~~vg~~~~~~~~~~~~  410 (415)
                      . ++|++||.. +.|++++|+|+|+||.||++++++..+
T Consensus       797 ~-~~l~~~d~~~~~~~~e~G~y~v~vG~ss~di~l~~~~  834 (845)
T 3abz_A          797 K-DAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEF  834 (845)
T ss_dssp             H-HHHCEEETTTTEEEECSEEEEEEEESSTTCEEEEEEE
T ss_pred             h-HHeeEEecCCCeEEEcCCEEEEEEECCCCCceeEEEE
Confidence            8 899999996 789999999999999999998876544
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 3e-25
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Beta-D-glucan exohydrolase, C-terminal domain
family: Beta-D-glucan exohydrolase, C-terminal domain
domain: Beta-D-glucan exohydrolase, C-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  100 bits (248), Expect = 3e-25
 Identities = 49/235 (20%), Positives = 78/235 (33%), Gaps = 28/235 (11%)

Query: 40  IVLLKNSART-----LPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRY 94
           +VLLKN   +     LPL   +   + V G ++D      G +     G T      +  
Sbjct: 1   LVLLKNGKTSTDAPLLPLPK-KAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTI 59

Query: 95  AKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ 154
            + +  A          +   A  V +      ++ +G     E +  +    + P    
Sbjct: 60  LEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTI-PEPGL 118

Query: 155 ELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRA 214
             V  V          VL+ G PV V          A++    PG  G   + D LFG  
Sbjct: 119 STVQAVCGGV--RCATVLISGRPVVVQ--PLLAASDALVAAWLPGSEGQG-VTDALFGDF 173

Query: 215 NPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYT 269
              G+LP TW+    V +LPM                  Y    +F  G+G++  
Sbjct: 174 GFTGRLPRTWFK--SVDQLPMN------------VGDAHYD--PLFRLGYGLTTN 212

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 100.0
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 97.15
d2q3za2114 Transglutaminase, two C-terminal domains {Human (H 92.76
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 92.18
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 91.23
d1ex0a2112 Transglutaminase, two C-terminal domains {Human (H 91.01
d1vjja2115 Transglutaminase, two C-terminal domains {Human (H 90.64
d2vzsa2122 Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato 88.06
d1g0da2112 Transglutaminase, two C-terminal domains {Red sea 87.5
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 84.56
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Beta-D-glucan exohydrolase, C-terminal domain
family: Beta-D-glucan exohydrolase, C-terminal domain
domain: Beta-D-glucan exohydrolase, C-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.2e-40  Score=307.40  Aligned_cols=197  Identities=25%  Similarity=0.334  Sum_probs=154.4

Q ss_pred             eEEEecCCC-----CCCCcCCCCCeEEEEccCCCcccccccccccC-------CCcccCHHHHHhhhcc----eeeeecc
Q 014987           40 IVLLKNSAR-----TLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGV-------ACGYTTPLQGISRYAK----TIHQAGC  103 (415)
Q Consensus        40 ivLLKN~~~-----~LPL~~~~~~~V~viG~~a~~~~~~~G~~~g~-------~~~~~t~~~~l~~~~~----~~~~~g~  103 (415)
                      ||||||+++     +|||+++ .+||+|+|++++....+.|+|+..       .....++.++++....    +.+....
T Consensus         1 iVLLKN~~~t~~~~lLPL~~~-~~~v~v~Gp~A~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (214)
T d1x38a2           1 LVLLKNGKTSTDAPLLPLPKK-APKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENP   79 (214)
T ss_dssp             CEEEEECSSTTSCCCCSCCSC-CSEEEEESTTTTCHHHHHCSSSSSTTCCSSCCSSCBCHHHHHHHHSCTTCEEEEESSC
T ss_pred             CEEeccCCCCCCCCcCCCCCC-CCEEEEECCCcCcccccCCCceeeccCCCCcccccccHHHHHhhhcccccceeeeccc
Confidence            799999764     5999753 579999999998877766766421       2234678888887642    1222211


Q ss_pred             CccccCCccchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCc
Q 014987          104 FGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFA  183 (415)
Q Consensus       104 ~~~~~~~~~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~  183 (415)
                                 +.....+..+|++|+++|+....+++ .|+.++.++..|.++++++++  ++|+|||+++++|+++.|+
T Consensus        80 -----------~~~~~~a~~~d~viv~vG~~~~~~~~-~~~~~~~~~~~q~~li~~~~~--~~p~VvVl~~~~p~~~~~~  145 (214)
T d1x38a2          80 -----------DAEFVKSGGFSYAIVAVGEHPYTETK-GDNLNLTIPEPGLSTVQAVCG--GVRCATVLISGRPVVVQPL  145 (214)
T ss_dssp             -----------CHHHHHHTTCSCEEEEEECCCCCGGG-GCCSSCCCCSSSHHHHHHHHT--TSCEEEEEECSSCCCCHHH
T ss_pred             -----------hhhhhhccccccceeeecccceeecc-cccccccCCccccceeeeecc--CCceEEEeecCCceeeecc
Confidence                       12334567789999999987765554 478899999999999999874  5789999999999999877


Q ss_pred             CCCCCccEEEeccCCChhHHHHHHHHhhcCCCCCccCCeeeccccccCCCCcccccccccCCCCCcccccCCCCcccccC
Q 014987          184 KNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFG  263 (415)
Q Consensus       184 ~~~~~v~Ail~a~~~g~~~g~AladvL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~lypFG  263 (415)
                      .  ++++|||++|+||++ |+|+||||||++|||||||+|| |++. ++.|++.            +||+|  +|+||||
T Consensus       146 ~--~~~~Ail~a~~pG~~-G~AladvL~G~~nPSGKLP~T~-p~~~-~~~p~~~------------~~~~~--~plypFG  206 (214)
T d1x38a2         146 L--AASDALVAAWLPGSE-GQGVTDALFGDFGFTGRLPRTW-FKSV-DQLPMNV------------GDAHY--DPLFRLG  206 (214)
T ss_dssp             H--HHCSEEEEEECCCSB-THHHHHHHTTSSCCCCCCSSCB-CSCG-GGCSCCT------------TCSSC--CCSBCTT
T ss_pred             c--cccCeeEeecccccc-chHHHHHhccCCCCCccCCccc-cCCc-ccCCCcC------------CCCCC--CccccCC
Confidence            4  578999999999998 7999999999999999999998 8877 7777421            35666  4999999


Q ss_pred             cCCCCCC
Q 014987          264 HGMSYTT  270 (415)
Q Consensus       264 ~GLSYt~  270 (415)
                      ||||||.
T Consensus       207 ~GLSY~~  213 (214)
T d1x38a2         207 YGLTTNA  213 (214)
T ss_dssp             CCBCCCC
T ss_pred             CCcCcCC
Confidence            9999985
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure