Citrus Sinensis ID: 015010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccHHHHHHHHcccccccccccccccccEEEEcccccccEEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEcccccccccccEEccEEEEcccccccHHHHHHHHHHccEEEEEEEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHcccHccccccccccHccccccccccHHHEEEEcccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEcccccccEEEEEEEccccccHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEccEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGLMYEDVVVISqaekpgdctvitvncpdktglgcdLCRIILLFGLsisrgdlskdgkwcYLVFWVVGKPTTRWSLLKNrllevcpsyfstSRIYSYrlenqqqpkppdvflLKFWCfqdrkgllHDVTEVLCELELTIKRVkvsttpdgrvmdLFFITDTRELLHTRKRREETIHHLEAVLGKTLISceielpgpeitacchgssflpsaitdemfslelpaeqpngflasapvsiavdnsfspshTLIQILGQDHKGLIYDMMRTLKDYNtqvsygrffakprgncevdLFIMqadgkkivdpskqDALCSRLRMELLRPLRVAVVnrgpdaellvanpvelsgrgrplvFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDeadgnleprnKIEDLVRKILMGWE
Flexible Loop (DISEMBL)
MGLMYEDVVVIsqaekpgdctVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTikrvkvsttpdgrvmdlffITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQAdgkkivdpsKQDALCSRLRMELLRPLRVAVVnrgpdaellvanpvelsgrgRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLdeadgnleprnkiEDLVRKILMGWE
Low Complexity Region (SEG)
MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE
Disordered region (IsUnstruct)
***MYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLEN******PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM***
Disordered Region (DISOPRED)
****YEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVC************************VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCE*****************************************SAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR************AELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGW*
Disordered Region (DISEMBL)
MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE
Disordered Region (DISPRO)
*GLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQ***F*ASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.432	0.188	0.258	5e-06
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.210	0.093	0.3	0.0003
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.178	0.079	0.363	0.0007

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 34/213 (15%)

Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL- 178
           D  GL   +   L     +I   ++ T  DG  +D F++ D          +   ++HL 
Sbjct: 764 DHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLV 823

Query: 179 -EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSI 237
            +A+ G+  I   IE       A  H +S    AI                     P  +
Sbjct: 824 EQALSGRLDIRKGIE------DASHHSTSRRMRAI-------------------HVPPRV 858

Query: 238 AVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQ 296
            +DN+ S  HT+I++ G+D  GL++D+   L   + Q+S         G   VD+F +  
Sbjct: 859 VIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTY--GMRAVDVFYVRD 916

Query: 297 ADGKKIVDPSKQDALCSRLRMELLRPLRVAVVN 329
             G KI DP +     +RLR  LL  L  A V 
Sbjct: 917 LLGMKITDPVR----LARLRETLLASLTSAPVT 945

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Gluconobacter oxydans (strain 621H) (taxid: 290633)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF 293
           P  + +DN+ S +HT+I++ G+D  GL+YD+ R L +   Q+S  +      G   +D+F
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKI--STYGEKAIDVF 901

Query: 294 -IMQADGKKIVDPSKQDALCSRLRMELLRP 322
            +    G K+   +K   +  RL   L  P
Sbjct: 902 YVKDVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 232 SAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVD 291
           + P  + VDN  S +HT+I+I G+D  G +Y + R L D   Q+S  R      G   VD
Sbjct: 823 TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARV--STYGERVVD 880

Query: 292 LF-IMQADGKKIVDPSK 307
            F +    G KIV  +K
Sbjct: 881 SFYVKDVFGMKIVHRAK 897

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
255585359	413	amino acid binding protein, putative [Ri	0.997	1.0	0.799	0.0
224109832	411	predicted protein [Populus trichocarpa]	0.992	1.0	0.787	0.0
224100729	412	predicted protein [Populus trichocarpa]	0.995	1.0	0.777	0.0
225448926	416	PREDICTED: uncharacterized protein LOC10	1.0	0.995	0.757	0.0
225448928	416	PREDICTED: uncharacterized protein LOC10	0.997	0.992	0.734	1e-175
449449320	412	PREDICTED: uncharacterized protein LOC10	0.995	1.0	0.731	1e-173
356572480	412	PREDICTED: uncharacterized protein LOC10	0.995	1.0	0.727	1e-172
225441177	411	PREDICTED: uncharacterized protein LOC10	0.990	0.997	0.715	1e-170
356548347	412	PREDICTED: uncharacterized protein LOC10	0.995	1.0	0.712	1e-169
356533259	411	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.714	1e-168

>gi|255585359|ref|XP_002533376.1| amino acid binding protein, putative [Ricinus communis] gi|223526783|gb|EEF29007.1| amino acid binding protein, putative [Ricinus communis]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/414 (79%), Positives = 366/414 (88%), Gaps = 1/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++YEDVVVISQAEKPGD TVITVNCPDKTGLGCDLCRIILLFGLSISRGDL  DGKWC
Sbjct: 1   MGMLYEDVVVISQAEKPGDSTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLQTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+V WVVGKP+TRWSLLK RLLEVCPSYFSTS I  YR ++QQ PK PDVFLLKFWC  D
Sbjct: 61  YIVLWVVGKPSTRWSLLKMRLLEVCPSYFSTSEISYYRPKDQQ-PKKPDVFLLKFWCSYD 119

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           R+GLLHDVTEVLCELELTIKRVKVST PDGRVMDLFFITDTRELLHT+ R+EETIH+L+ 
Sbjct: 120 REGLLHDVTEVLCELELTIKRVKVSTAPDGRVMDLFFITDTRELLHTKHRQEETIHYLKD 179

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           VLG  LISCEIE  G E+TAC  GSS LPSAIT++MF++ELP +Q  GFL   PVS+++D
Sbjct: 180 VLGDALISCEIESAGAEVTACSQGSSLLPSAITEDMFNMELPDKQRKGFLTPNPVSVSMD 239

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           N+ S SHTL+Q L +DHKGL+YD+MRTLKDYN Q+SYGRF+A P+G+CEVDLFIMQADGK
Sbjct: 240 NTLSRSHTLLQFLCKDHKGLMYDIMRTLKDYNIQISYGRFYATPKGHCEVDLFIMQADGK 299

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KI+D  KQDALCSRLRMELLRPLRVAVV+RGPD ELLVANPVELS RGRPLVFYDITLAL
Sbjct: 300 KIIDSYKQDALCSRLRMELLRPLRVAVVSRGPDTELLVANPVELSERGRPLVFYDITLAL 359

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           KIL+  IFSVEIGR+MIHDREWEVYRILLDE DG   PRNKIE+ VRK LMGW+
Sbjct: 360 KILNTRIFSVEIGRHMIHDREWEVYRILLDEGDGFTVPRNKIEESVRKRLMGWD 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109832|ref|XP_002315327.1| predicted protein [Populus trichocarpa] gi|222864367|gb|EEF01498.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/414 (78%), Positives = 361/414 (87%), Gaps = 3/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++ EDVVVISQAEKPG+  VITVNCPDKTGLGCDLCR+ILLFGLSI R D   DGKWC
Sbjct: 1   MGILQEDVVVISQAEKPGEPAVITVNCPDKTGLGCDLCRVILLFGLSICREDAQTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           YLVFWVVGKP TRW LLK RLLEVCPSYFSTS    Y+ ENQQ PKPPDVFLLKFWC  D
Sbjct: 61  YLVFWVVGKPNTRWDLLKKRLLEVCPSYFSTSEFDYYKPENQQ-PKPPDVFLLKFWCAYD 119

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           R+GLLHDVTEVL ELELTIKRVKVST PDGRV+DLFFITD RELLHT+ R+EETIH+L+ 
Sbjct: 120 REGLLHDVTEVLWELELTIKRVKVSTAPDGRVLDLFFITDNRELLHTKMRQEETIHYLKN 179

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           VLGK LISCEIEL G E+TAC    SFLP AIT++MF+LELP +  +GFLA  PVS+ VD
Sbjct: 180 VLGKALISCEIELAGAEVTAC--SQSFLPPAITEDMFNLELPNKHRSGFLAPNPVSVTVD 237

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           N+FSPSHTLIQIL +DHKGL YD+MRTLKDY+ Q+SYGRFFA  +GNCEVDLF+MQADGK
Sbjct: 238 NTFSPSHTLIQILCKDHKGLSYDIMRTLKDYHIQISYGRFFANRKGNCEVDLFLMQADGK 297

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIVDP+KQ+ALCSRLRMELLRP+R+AVV+RGPD ELLVANPVELSGRGRPLVF+DITLAL
Sbjct: 298 KIVDPNKQNALCSRLRMELLRPVRLAVVSRGPDTELLVANPVELSGRGRPLVFHDITLAL 357

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           K L+  IFSVEIGR+MIHDREWEVYRILLDE DG    RNKIE+ VRK+LMGWE
Sbjct: 358 KTLNTRIFSVEIGRHMIHDREWEVYRILLDEGDGLPVSRNKIEEGVRKVLMGWE 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100729|ref|XP_002311991.1| predicted protein [Populus trichocarpa] gi|222851811|gb|EEE89358.1| predicted protein [Populus trichocarpa]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/414 (77%), Positives = 361/414 (87%), Gaps = 2/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++ EDVVVIS+ EKPG+ T ITVNCPDK GLGCDLCR+ILLFGLSI +GD   DGKWC
Sbjct: 1   MGILQEDVVVISEGEKPGESTEITVNCPDKAGLGCDLCRVILLFGLSICKGDGQTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+VFWVVGKP+TRW+LLK RLLEVCPSYFSTS I  Y+ ENQQ P+PPDVFLLKFWC  D
Sbjct: 61  YVVFWVVGKPSTRWNLLKQRLLEVCPSYFSTSEIDFYKPENQQ-PRPPDVFLLKFWCSYD 119

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
            +GLLHDVTEVLCELELTI+RVKVST PDGRVMDLF+ITDTRELL T+ R+EETIH+L+ 
Sbjct: 120 YEGLLHDVTEVLCELELTIERVKVSTAPDGRVMDLFYITDTRELLRTKMRQEETIHYLKK 179

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           VLGK LISCEIEL GPE TAC  GS FLPSAIT++MFSLELP    +GFLA  PVS+ VD
Sbjct: 180 VLGKALISCEIELAGPEFTACSQGSPFLPSAITEDMFSLELPNNHRSGFLAHNPVSVTVD 239

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           N+FSPSHTL++IL +DHKGLIYD+ RTLKDYN Q+SYGRF A  +GNCEVDLF+MQADGK
Sbjct: 240 NAFSPSHTLVKILCKDHKGLIYDITRTLKDYNIQISYGRFLASRKGNCEVDLFLMQADGK 299

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIVDP+KQ+ALCSRLRMELL PLR+AVV+RGPD ELLVANPVELSGRGRPLVF+DITLAL
Sbjct: 300 KIVDPNKQNALCSRLRMELLCPLRLAVVSRGPDTELLVANPVELSGRGRPLVFHDITLAL 359

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           K L+  IFSVEIGR+MIHDREWEVYRILL E DG    RNKIE+ VRK+LMGWE
Sbjct: 360 KNLNTPIFSVEIGRHMIHDREWEVYRILL-EGDGLPVSRNKIEEGVRKVLMGWE 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448926|ref|XP_002266940.1| PREDICTED: uncharacterized protein LOC100266711 [Vitis vinifera] gi|296085960|emb|CBI31401.3| unnamed protein product [Vitis vinifera]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/416 (75%), Positives = 352/416 (84%), Gaps = 2/416 (0%)

Query: 1   MGLMY--EDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGK 58
           MG++Y  EDVV+I QAEKPGD   ITVNCPDKTGLGCDLCRIIL FGLSI+RGD+S DGK
Sbjct: 1   MGILYDYEDVVLIRQAEKPGDPAEITVNCPDKTGLGCDLCRIILQFGLSITRGDVSTDGK 60

Query: 59  WCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCF 118
           WCY++FWVVGKP TRW+LL  RL+EVCPS  S S I  Y+ E QQQPKPPDVFLLKFWC+
Sbjct: 61  WCYILFWVVGKPNTRWNLLHKRLMEVCPSCSSASGISFYKPEFQQQPKPPDVFLLKFWCY 120

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
            DRKGLLHDVTEVLCELELTIKRVKVST PDGRVMDLFF+TDTR  LHT+KR+E+TIH L
Sbjct: 121 HDRKGLLHDVTEVLCELELTIKRVKVSTAPDGRVMDLFFVTDTRNELHTKKRQEDTIHRL 180

Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIA 238
           +AVLG  ++S EIEL GPE+TAC  GSSFLP AIT+E+FSLELP E+ NG  AS  +S+ 
Sbjct: 181 KAVLGDAMMSVEIELAGPEVTACSQGSSFLPPAITEEIFSLELPNERSNGSAASNSLSVT 240

Query: 239 VDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQAD 298
           +DNS SPSHTLIQI+ QDHKGLIYD+MRTLKDYN Q SYGRF A  +G CE DL + Q D
Sbjct: 241 MDNSLSPSHTLIQIICQDHKGLIYDIMRTLKDYNIQTSYGRFSANAKGMCEADLLVRQVD 300

Query: 299 GKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITL 358
           GKKIVDP+K++AL SRLRMEL RPLRVAV +RGPD ELLVANPVELSGRGRPLVFYDITL
Sbjct: 301 GKKIVDPNKRNALSSRLRMELFRPLRVAVRSRGPDTELLVANPVELSGRGRPLVFYDITL 360

Query: 359 ALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           ALK+L+I IFSVEI R+MI DREWEVYRILLDE DG    RNKIE+ VRK LMGWE
Sbjct: 361 ALKLLNIQIFSVEIARHMIQDREWEVYRILLDEGDGFCVSRNKIEEGVRKKLMGWE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448928|ref|XP_002271915.1| PREDICTED: uncharacterized protein LOC100259822 [Vitis vinifera] gi|296085961|emb|CBI31402.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 305/415 (73%), Positives = 341/415 (82%), Gaps = 2/415 (0%)

Query: 1   MGLMY--EDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGK 58
           MG++Y  EDVV+I QAEKPGD T ITVNCPDK GLGCDLCRIIL FGLSISRGD S DGK
Sbjct: 1   MGILYDYEDVVLIRQAEKPGDPTEITVNCPDKIGLGCDLCRIILRFGLSISRGDSSTDGK 60

Query: 59  WCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCF 118
           WCY++FWVVGKP TRW+LL  RLLEVCPS  S S I  Y+ E QQQPKPPDVFLLKFWC+
Sbjct: 61  WCYILFWVVGKPNTRWNLLHRRLLEVCPSCSSASGISFYKPEFQQQPKPPDVFLLKFWCY 120

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
            D KGLLHD+TE LCELELTIKRVKVST PDGRVMDLFF+TDTR  LHT++RR+E I+HL
Sbjct: 121 YDWKGLLHDITEALCELELTIKRVKVSTAPDGRVMDLFFVTDTRNELHTQERRDEAIYHL 180

Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIA 238
           + VLG  +ISCEIEL GPE+T C  GSSFLP AIT+E+FSLELP    NG  AS  + + 
Sbjct: 181 KDVLGDAMISCEIELAGPEVTGCSQGSSFLPPAITEEIFSLELPDGHQNGSPASNALIVT 240

Query: 239 VDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQAD 298
           +DNS SPSHT + I+ QD KG IYD+MRTLKDYN Q SYGRFFA  +G  E DL +MQAD
Sbjct: 241 MDNSLSPSHTHVHIICQDQKGRIYDIMRTLKDYNIQTSYGRFFANAKGIFEADLLVMQAD 300

Query: 299 GKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITL 358
           GKK+VDP+KQ+AL SRL+MEL  PLRVAV +RGPD ELLVANPVEL GRGRPLVFYDITL
Sbjct: 301 GKKLVDPNKQNALSSRLKMELFCPLRVAVESRGPDTELLVANPVELCGRGRPLVFYDITL 360

Query: 359 ALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGW 413
           ALKIL I IFSVEIGR+MI DREWEVYRILLDE +G+   RNKIE+ VRK LMGW
Sbjct: 361 ALKILKIQIFSVEIGRHMIQDREWEVYRILLDEEEGSCVSRNKIEEGVRKKLMGW 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449320|ref|XP_004142413.1| PREDICTED: uncharacterized protein LOC101203151 [Cucumis sativus] gi|449487252|ref|XP_004157538.1| PREDICTED: uncharacterized protein LOC101230856 [Cucumis sativus]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/413 (73%), Positives = 343/413 (83%), Gaps = 1/413 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++YED VVI+  EK GD  VITVNCPDKTGLGCDLCRIILLFGLSISRGD S DGKWC
Sbjct: 1   MGILYEDSVVITSGEKQGDPHVITVNCPDKTGLGCDLCRIILLFGLSISRGDFSTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+V WVVGKPTTRW LLK RLLEVCPS+FSTS I  Y+ E + Q KPPDVFLLKFWC   
Sbjct: 61  YIVLWVVGKPTTRWPLLKKRLLEVCPSHFSTSGIRFYQQEKEIQ-KPPDVFLLKFWCSSH 119

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
            KGLLHDVTEVLCELELTI+RVKVST PDG++MDLFFITDTRELLHTRKR+EET+HHL+ 
Sbjct: 120 PKGLLHDVTEVLCELELTIRRVKVSTAPDGKMMDLFFITDTRELLHTRKRQEETMHHLKM 179

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           +L   L+SCEIEL GPE TAC   S  LPS+I++E+FSLELP    N  L S    +++D
Sbjct: 180 ILADVLMSCEIELAGPEFTACSQRSPNLPSSISEELFSLELPHGPSNRHLPSHSAVVSID 239

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           NS S SHT+IQ+L  DHKGL+YD+MRTLKDYN QVSYGRF    +G C+++LF MQ+DG 
Sbjct: 240 NSISRSHTVIQLLCLDHKGLMYDIMRTLKDYNIQVSYGRFHLNSKGKCDIELFTMQSDGC 299

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIVDP+K++ALCSRLRMEL RPLR AVV+RGPD ELLVANPVELSGRGRPLVF+DITLAL
Sbjct: 300 KIVDPNKKNALCSRLRMELTRPLRAAVVSRGPDTELLVANPVELSGRGRPLVFHDITLAL 359

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGW 413
           K L++SIFSVEIGR+MIH REWEVYRILLDE D     +NKIE+ VR ILMGW
Sbjct: 360 KQLNMSIFSVEIGRHMIHGREWEVYRILLDEGDIVWVQQNKIEEGVRNILMGW 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572480|ref|XP_003554396.1| PREDICTED: uncharacterized protein LOC100818216 [Glycine max]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/414 (72%), Positives = 341/414 (82%), Gaps = 2/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++++DVV+I +AEK G  TVITVNCPDKTGLGCDLCRIIL FGLSI RGD+S DGKWC
Sbjct: 1   MGILHDDVVIIGEAEKEGKATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+VFWVVGK   RWSLLK RL+E CPS  S S I  YR E  Q PKPPDVFLLKF C  D
Sbjct: 61  YIVFWVVGKQRARWSLLKKRLIEACPSCSSASGISYYRSE-LQPPKPPDVFLLKF-CCHD 118

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           RKGLLHDVTEVL ELEL I +VKVSTTPDG+V+DLFFITDTRELLHT+KRR++TI  L A
Sbjct: 119 RKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSA 178

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           +LG  LI+ +IEL GPEI AC   SSFLPSA+T++MF LELP    +G   S  VSI +D
Sbjct: 179 ILGDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSIQSGTSTSDSVSITMD 238

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           NS SP+HTL+QI+ QDHKGL+YD+MRTLKDYN Q+SYGRF  KPRG CE+DLFIMQADGK
Sbjct: 239 NSLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIMQADGK 298

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIV+PSKQ +L SRLRMELLRPLRV VV+RGPD ELLVANPVELSG+GRPLVFYDIT AL
Sbjct: 299 KIVNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFYDITHAL 358

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           K+L   IFS E+GR+++ DREWEVYRILLDE DG   PRNKIE  V K+LMGWE
Sbjct: 359 KMLGPCIFSAEVGRHVVGDREWEVYRILLDEGDGLSVPRNKIEKGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441177|ref|XP_002268949.1| PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera] gi|297739971|emb|CBI30153.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/415 (71%), Positives = 346/415 (83%), Gaps = 5/415 (1%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++Y+DVV+I  +EK G+  V+TVNCPDKTGLGCDLCRIIL FGLSI R D+S DGKWC
Sbjct: 1   MGILYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+VFW++GK TTRWSLL++RL E CPS  S S    ++L   Q PKPPDVFLLKF C+ D
Sbjct: 61  YIVFWIIGKSTTRWSLLQDRLSEACPSCSSASGFSYFQL---QPPKPPDVFLLKFCCY-D 116

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           RKGLLHDVTEVLCELELTIK+VKVSTTPDGRVMDLFFITDTRELLHT+KR+E+T +HL+ 
Sbjct: 117 RKGLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFFITDTRELLHTKKRQEDTHNHLKT 176

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGF-LASAPVSIAV 239
           VLG  +ISC+I + G EITAC   S+ LPSAIT E+F  +   E P+G    S  +S+ +
Sbjct: 177 VLGDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKFEDEPPSGLPQVSGNISVTM 236

Query: 240 DNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADG 299
           DNS SP+HTL+QI+ QDHKGL+YDMMRTLKDYN ++SYGR   KPR NCEVDLFIMQADG
Sbjct: 237 DNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRLTTKPRRNCEVDLFIMQADG 296

Query: 300 KKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLA 359
           KK+VDP KQ+ALCSRL+MELLRPLRVAVV+RGPD ELLVANPVELSG+GRPLVF+DIT A
Sbjct: 297 KKVVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVANPVELSGKGRPLVFFDITHA 356

Query: 360 LKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           LK+L++ IFS EIGR MI DREWEVYRILLDE DG L PRNKIE+ V K+LMGWE
Sbjct: 357 LKMLNVCIFSAEIGRQMIADREWEVYRILLDEGDGLLVPRNKIEEGVWKMLMGWE 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548347|ref|XP_003542564.1| PREDICTED: uncharacterized protein LOC100816138 [Glycine max]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/414 (71%), Positives = 345/414 (83%), Gaps = 2/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++Y+DVV+IS  EK GD T++TVNCPDKTGLGCDLCRIIL FGL+I RGD+S DGKWC
Sbjct: 1   MGILYDDVVIISPPEKDGDPTLLTVNCPDKTGLGCDLCRIILFFGLNILRGDVSTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+VFWVVGK  TRWSLLK RL+E CPS+ S S I  YR  + Q  KP DVFLL F C  D
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSFSSASGISYYR-SDLQPSKPSDVFLLNF-CCHD 118

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           RKGLLHDVTEVLCELELTIK+VKVSTTPDG+V+DLFFITDTRELLHT+KR++ETI +L  
Sbjct: 119 RKGLLHDVTEVLCELELTIKKVKVSTTPDGKVIDLFFITDTRELLHTKKRKDETIEYLTE 178

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           ++G  +IS +IEL GPEITAC     FLP+AIT+++F LELP     G L S  VSI +D
Sbjct: 179 IMGDAIISIDIELVGPEITACSQAPPFLPTAITEDVFDLELPDLARGGTLRSDYVSITMD 238

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           N  SP+HTL+QI+ QDHKGL+YD+MRTLKDYN Q+SYGRF AKPRG CE+DLFIMQADGK
Sbjct: 239 NLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTAKPRGKCEIDLFIMQADGK 298

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIVDP+KQ++L SRLRMELLRPLRVA+V+RGPD ELLV+NPVELSG+GRPLVFYDITLAL
Sbjct: 299 KIVDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLAL 358

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           K+L   IF  +IGR++I DREWEVYRILLDE +G   PRNK+E+ V K+LMGWE
Sbjct: 359 KMLDTCIFLAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533259|ref|XP_003535183.1| PREDICTED: uncharacterized protein LOC100789465 [Glycine max]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/414 (71%), Positives = 342/414 (82%), Gaps = 3/414 (0%)

Query: 1   MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
           MG++Y+DVV+I   EK GD T++TVNCPDKTGLGCDLCRI+L FGL+I RGD+S DGKWC
Sbjct: 1   MGILYDDVVIIRPPEKDGDPTLLTVNCPDKTGLGCDLCRIMLFFGLNIIRGDVSTDGKWC 60

Query: 61  YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQD 120
           Y+VFWVVGK  TRWSLLK RL+E CPS  S S I  YR  + Q  KP DVFLL F C  D
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSCSSASGISYYR-SDLQPSKPSDVFLLNFSC-HD 118

Query: 121 RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180
           RKGLLHDVTEVLCELELTIK+VKVSTTPDG+VMDLFFITDTRELLHT+KR++ETI HL  
Sbjct: 119 RKGLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLHTKKRKDETIEHLTE 178

Query: 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVD 240
           ++G  +IS +IEL GPEITAC     FLP+AITD +F LELP     G L S  VSI +D
Sbjct: 179 IMGDAIISIDIELVGPEITACSKAPPFLPTAITD-IFDLELPDLARGGTLRSDYVSITMD 237

Query: 241 NSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGK 300
           N  SP+HTL+QI+ QDHKGL+YD+MRTLKDYN Q+SYGRF  KPRG CE+DLFIMQADGK
Sbjct: 238 NLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGKCEIDLFIMQADGK 297

Query: 301 KIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLAL 360
           KIVDP+KQ++L SRLRMELLRPLRVA+V+RGPD ELLV+NPVELSG+GRPLVFYDITLAL
Sbjct: 298 KIVDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLAL 357

Query: 361 KILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
           K+L   IFS +IGR++I DREWEVYRILLDE +G   PRNK+E+ V K+LMGWE
Sbjct: 358 KMLDTCIFSAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.983	0.992	0.616	1.8e-133
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.966	0.973	0.542	2.2e-114
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.722	0.690	0.219	0.00017
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.456	0.415	0.225	0.0004

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 257/417 (61%), Positives = 319/417 (76%)

Query:     1 MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
             MG++ +DVV+ISQ+EK GD +VIT+NCPDKTGLGCDLCRI+L FGL+I RGD+S DGKWC
Sbjct:     1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWC 60

Query:    61 YLVFWVVGKPTTRWSLLKNRLLEVCPSY---FSTSRIYSYRLENQQQPKPPDVFLLKFWC 117
             YLVFWV+GKP TRW+LLK RL+E  PS+   F  SR Y    E+Q  PK PD+FLLK  C
Sbjct:    61 YLVFWVIGKPNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQP-PKLPDLFLLKLAC 119

Query:   118 FQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHH 177
               DR GLL+DVTEVL +LE+ I++VK+STTPDG+VMDLFF+TDTRELL T KRR E   +
Sbjct:   120 -SDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVKRRNEVYEY 178

Query:   178 LEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSI 237
             L   +G ++IS +IEL GPEITAC   SS     + + +FS ++  E  +G   S+ VSI
Sbjct:   179 LRDAIGDSMISYDIELVGPEITACSTSSS-----VAETLFSSDVSGEHSSGLHTSSNVSI 233

Query:   238 AVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQA 297
             AVDNS S +HTLI I  QDHKGL+YD+MRT KD+N Q+SYGRF  K   NCE+DLFI+Q+
Sbjct:   234 AVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQS 293

Query:   298 DGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDIT 357
             DG+KI+D SK +AL +RLR EL +PLRV ++NRGPD ELLV NPVELSG+GRP VF+DI 
Sbjct:   294 DGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQVFHDIA 353

Query:   358 LALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGWE 414
             LALK +   IFS EIGR++  DREWEVY++L++E D    PR+KIE+ V K LMGWE
Sbjct:   354 LALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIPRSKIEEEVWKTLMGWE 410

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 230/424 (54%), Positives = 294/424 (69%)

Query:     1 MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
             MG++ +D V+I   +  GD TV+TVNCPD++GLG  LCRIIL FGLSI+R D S DG+WC
Sbjct:     1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query:    61 YLVFWV---VGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWC 117
             Y+VFWV   +  P   W  LKNRLL  CPS   +   + + L++    KPP ++LLKF+C
Sbjct:    61 YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGS---FYFCLQSNVS-KPPSLYLLKFFC 116

Query:   118 FQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHH 177
              +DRKGLLHDVT+VL ELE TI+RVKV TTPDGRV+D+FFITD  +LLHT++R+ +T  H
Sbjct:   117 -RDRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDH 175

Query:   178 LEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVS- 236
             L AVLG+  +SCE+EL GPE+ +    SS LP    DE+F        P+GF  S   S 
Sbjct:   176 LTAVLGEHGVSCELELAGPELESVQRFSS-LPPLAADELFG-------PDGFDISGSSSN 227

Query:   237 ---IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF 293
                + VDN  SP+HTL+QI   D KGL YD++RT KD +  ++YGRF +K +G   ++LF
Sbjct:   228 KAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELF 287

Query:   294 IMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLVANPVELSGRGRPLVF 353
             +   DG KI+DP  Q   C+RL+ E++ PLRV +VNRGPD ELLVANPVELSG+GRP VF
Sbjct:   288 VRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVF 347

Query:   354 YDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEAD----GNLEPRNKIEDLVRKI 409
             YD+TLALK L I IFS EIGR+   DR+WEVYR LLDE+      +L  RN++ D V K 
Sbjct:   348 YDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKT 407

Query:   410 LMGW 413
             LMGW
Sbjct:   408 LMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
 Identities = 70/319 (21%), Positives = 132/319 (41%)

Query:     8 VVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV 67
             VV+ + A    D TVI V+  +K G   ++ +++    L I +  +S DG W   VF V+
Sbjct:    18 VVIDNNASD--DATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75

Query:    68 GKPTTRWSLLKNRLLEVCPSYF-STSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLH 126
              +   +  +   ++L+       S +  +   L +     P D +        DR GLL 
Sbjct:    76 DQDGNK--IRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIELAGTDRPGLLS 133

Query:   127 DVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD--TRELLHTRKRREETIHHLEAVLGK 184
             +V+ VL +L   +   ++  T + R   +  +TD  T   + T   R  TI  L   + +
Sbjct:   134 EVSAVLTDLHCNVVNAEI-WTHNTRAAAVIHVTDNSTHSAI-TDPIRLSTIKELLCNVVR 191

Query:   185 TLISCEIELPGPEITACC--HGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNS 242
             T            + +C   H    L   + D+     +   + +   AS P S+ + N 
Sbjct:   192 TNSGSRA---AKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTS---ASRP-SVTLMN- 243

Query:   243 FSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKI 302
                 +T++ +  +D   L++D++ TL D    V +G    +P    + + +I   DG  I
Sbjct:   244 IEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQ-EFYIRHVDGLPI 302

Query:   303 VDPSKQDALCSRLRMELLR 321
                ++Q+ +   L   + R
Sbjct:   303 NSEAEQERVIQCLEAAIER 321

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 45/200 (22%), Positives = 89/200 (44%)

Query:   217 FSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVS 276
             FS ++  E         P  + +DN      T+I++   +  G++ ++++ L D N  ++
Sbjct:     7 FSQDMDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTIT 66

Query:   277 YGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAE 335
               + +    G   +D+F +   DG K+ D    D +   L  E      +  V   P  +
Sbjct:    67 --KAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTD 124

Query:   336 LLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEAD-G 394
               V   +EL+G  RP +  +++  L  L  S+ + EI  +  + R   V ++  D    G
Sbjct:   125 STV---IELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTH--NTRAAAVMQVTDDLTGCG 179

Query:   395 NLEPR--NKIEDLVRKILMG 412
               +P   ++I++L+R +L G
Sbjct:   180 ISDPERLSRIKNLLRNVLKG 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.141   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      414       414   0.00081  118 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  271 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.79u 0.13s 35.92t   Elapsed:  00:00:02
  Total cpu time:  35.79u 0.13s 35.92t   Elapsed:  00:00:02
  Start:  Thu May  9 22:09:37 2013   End:  Thu May  9 22:09:39 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-38
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	2e-37
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	6e-36
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	4e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-12
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-08
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-08
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	3e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	5e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-04
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-04
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	3e-04
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	0.001
pfam01842	66	pfam01842, ACT, ACT domain	0.002

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  132 bits (334), Expect = 2e-38
 Identities = 61/77 (79%), Positives = 68/77 (88%), Gaps = 1/77 (1%)

Query: 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKR 170
           FLLK +C  DRKGLLHDVTEVL ELELTI+RVKVSTTPDGRV+DLFFITD RELLHT+KR
Sbjct: 1   FLLKLFCS-DRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKR 59

Query: 171 REETIHHLEAVLGKTLI 187
           REET  +L AVLG ++I
Sbjct: 60  REETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (328), Expect = 2e-37
 Identities = 47/75 (62%), Positives = 60/75 (80%)

Query: 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSK 307
           TL+QI   D KGL+YD++RT KD N Q+SYGRF +K +G  EVDLFI+Q+DGKKI+DP K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 308 QDALCSRLRMELLRP 322
           Q ALC+RLR E++ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  126 bits (317), Expect = 6e-36
 Identities = 49/69 (71%), Positives = 57/69 (82%), Gaps = 3/69 (4%)

Query: 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT---TRWSLL 77
          +VIT+NCPDKTGLGCDLCRIIL FGL+I+RGD S DG+WCY+VFWVV +P     RW LL
Sbjct: 1  SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLL 60

Query: 78 KNRLLEVCP 86
          KNRL+  CP
Sbjct: 61 KNRLMSACP 69

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  110 bits (277), Expect = 4e-30
 Identities = 49/77 (63%), Positives = 55/77 (71%), Gaps = 3/77 (3%)

Query: 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL--- 396
           NPVELSG+GRP VFYDITLALK L I IFS EIGR+   DR+WEVYR+LL E D      
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 397 EPRNKIEDLVRKILMGW 413
             R+K+ D V K LMGW
Sbjct: 61  RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179
           DR GLL DVT VL EL L I   K++T  + R  D+F++TD       +    E    L 
Sbjct: 9   DRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDA----DGQPLDPERQEALR 63

Query: 180 AVLGKTL 186
           A LG+ L
Sbjct: 64  AALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
            DR GLL D+T VL +L L I   ++STT + R +D+F++TD+       +R       L
Sbjct: 8   PDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEAL 66

Query: 179 EAVL 182
           E  L
Sbjct: 67  EDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV---GKPTT--RWS 75
          TV+ V  PD+ GL  D+ R++   GL+I    +S  G+    VF+V    G+P    R +
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 76 LLKNRLLEVC 85
           L+  L +  
Sbjct: 61 RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 35/204 (17%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
            DR  L   V   L    L+I   ++ TT DG  +D F + +         RR      L
Sbjct: 692 PDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGEL 751

Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPV--S 236
              L                          P               +    L   P+   
Sbjct: 752 IEAL--------------------LSGKAQPP-----------RRRRIPRKLRHFPIPPR 780

Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296
           + +  + S   T++++   D  GL+  +     D    +   +      G    D+FI+ 
Sbjct: 781 VTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAK--ITTFGERVEDVFIVT 838

Query: 297 ADGKKIVDPSKQDALCSRLRMELL 320
               + ++   + +L  RL   LL
Sbjct: 839 DADGQALNAELRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 50/209 (23%)

Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL- 178
           D  GL   +          I   ++ TT DGR +D F+I D         RR   +    
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAI 800

Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIA 238
           E  L     S E+ LP                   + +     P ++   F    P  + 
Sbjct: 801 EDAL-----SGEVRLP-------------------EALAKRTKPKKRARAF--HVPPRVT 834

Query: 239 VDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVS------YGR-----FFAKPRGN 287
           +DN  S   T+I++ G+D  GL+YD+ R L D N  ++      YG      F+      
Sbjct: 835 IDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT---- 890

Query: 288 CEVDLFIMQADGKKIVDPSKQDALCSRLR 316
              DLF     G KI + ++Q A+   L 
Sbjct: 891 ---DLF-----GLKITNEARQAAIRRALL 911

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSK 307
           T++++   D  GL+ D+ R L D    +   R      G   +D+F +     + +DP +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPER 58

Query: 308 QDALCSRLRMEL 319
              L   L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD-TRELLHTRKRREETIHH 177
            DR GL   +   L +L L I   ++ TT DG  +D F + D   E +  R+R       
Sbjct: 9   PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREA 68

Query: 178 LEAVL 182
           LE  L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 25/184 (13%)

Query: 21  TVITVNCPDKTGLGCDLCRIILLFGLSI--SRGDLSKDGKW--CYLVFWVVGKPT--TRW 74
           T + V  PD+  L   +C  +   GLSI  ++   ++DG     ++V    G P    R 
Sbjct: 685 TEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRR 744

Query: 75  SLLKNRLLEVCPS---YFSTSRIYSYRLENQQQPKPPDV-FLLKFWCFQ--------DRK 122
           + L+  L+E   S        R    +L  +  P PP V  L      +        DR 
Sbjct: 745 AALRGELIEALLSGKAQPPRRRRIPRKL--RHFPIPPRVTILPTASNDKTVLEVRALDRP 802

Query: 123 GLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182
           GLL  +  V  +L L++   K+ TT   RV D+F +TD       +    E    L   L
Sbjct: 803 GLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADG----QALNAELRQSLLQRL 857

Query: 183 GKTL 186
            + L
Sbjct: 858 LEAL 861

Length = 867

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 117 CFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160
             +DR GLL DVT V  E  LT+ R ++ST      +++F++TD
Sbjct: 7   RTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
            DR GLL  V   L EL L+I+  K++T  + +  D+F++TD   L  T +  +     L
Sbjct: 787 LDRPGLLARVGRTLEELGLSIQSAKITTFGE-KAEDVFYVTDLFGLKLTDEEEQ----RL 841

Query: 179 EAVLGKTL 186
             VL  ++
Sbjct: 842 LEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 39/205 (19%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD-TRELLHTRKRREETIHH 177
            D+ GL   V   L  L L++   +V+TT DG  +D F + D         +  +E +  
Sbjct: 676 PDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQG 735

Query: 178 LEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSI 237
           L  VL                           SA       L+  A  P          +
Sbjct: 736 LVDVLAGLA-----------------KDPDTISARRARRRRLQHFAVPP---------RV 769

Query: 238 AVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAK--PRGNCEVDLFIM 295
            + N+ S   T++++   D  GL+  + RTL++    +      AK    G    D+F +
Sbjct: 770 TILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQS----AKITTFGEKAEDVFYV 825

Query: 296 Q-ADGKKIVDPSKQDALCSRLRMEL 319
               G K+      D    RL   L
Sbjct: 826 TDLFGLKL-----TDEEEQRLLEVL 845

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRR 171
            DR GLL  V  VL E  + I  ++  T+ DG   D+F + D    L      
Sbjct: 6   PDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEA 58

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNK 401
           VE+    RP +  DIT  L  L ++I    I      +R  +V+ +   ++DG      +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVT--DSDGRPLDPER 58

Query: 402 IEDLVRKI 409
           I  L   +
Sbjct: 59  IARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179
           DR GLL  V++V  EL L +   K++T  + +  D F +T+ +      + R+     L 
Sbjct: 792 DRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLL 850

Query: 180 AVLG 183
           + L 
Sbjct: 851 SNLS 854

Length = 854

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDG-RVMDLFFITDTRELLHTRKRREETIH- 176
           +DR GLL+D+T  L +L L I    ++T   G R +D+F++TD   L  T + R+  I  
Sbjct: 851 RDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTDLFGLKITNEARQAAIRR 908

Query: 177 HLEAVL 182
            L A L
Sbjct: 909 ALLAAL 914

Length = 931

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREE 173
            DR GLL +V   L +  + I+ +  ST+ D   ++ +  + D  +L    +  ++
Sbjct: 8   PDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKK 63

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
PRK04374	869	PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.79
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.78
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.74
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.69
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.64
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.57
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.56
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.56
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.53
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.47
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.44
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.4
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.31
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.29
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.24
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.24
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.13
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.01
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.92
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.8
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.78
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.67
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.43
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.39
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.36
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.25
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.21
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.14
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.1
COG4747	142	ACT domain-containing protein [General function pr	97.97
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.97
PRK00194	90	hypothetical protein; Validated	97.91
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.9
COG4747	142	ACT domain-containing protein [General function pr	97.9
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.85
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.84
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.73
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.7
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.68
PRK00194	90	hypothetical protein; Validated	97.62
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.58
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.55
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.53
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.46
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.41
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.27
COG3830	90	ACT domain-containing protein [Signal transduction	97.25
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.19
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.18
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.18
PRK07431	587	aspartate kinase; Provisional	97.12
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.11
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.09
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.06
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.06
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.05
COG3830	90	ACT domain-containing protein [Signal transduction	97.0
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.99
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.97
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.94
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.92
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.92
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.91
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.87
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.87
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.83
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.78
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.77
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.75
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.71
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.66
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.62
PRK08577	136	hypothetical protein; Provisional	96.62
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.62
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.59
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.58
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.57
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.55
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.52
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.48
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.48
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.44
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.43
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.42
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.41
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.37
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.32
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.29
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.28
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.27
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.27
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.2
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.19
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.15
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.14
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.09
PRK04435	147	hypothetical protein; Provisional	96.08
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.06
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.04
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.03
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.03
PRK08577	136	hypothetical protein; Provisional	96.0
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.97
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.86
cd02116	60	ACT ACT domains are commonly involved in specifica	95.8
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.78
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.74
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.72
PRK07431	587	aspartate kinase; Provisional	95.58
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.58
PRK04435	147	hypothetical protein; Provisional	95.52
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.51
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.46
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.45
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.42
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.4
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.4
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.18
PRK11899	279	prephenate dehydratase; Provisional	95.17
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.15
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.1
cd02116	60	ACT ACT domains are commonly involved in specifica	95.08
PRK07334	403	threonine dehydratase; Provisional	95.05
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.91
PRK07334	403	threonine dehydratase; Provisional	94.86
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	94.83
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.75
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.72
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.4
PRK06635	404	aspartate kinase; Reviewed	93.97
COG1707	218	ACT domain-containing protein [General function pr	93.97
PRK11899	279	prephenate dehydratase; Provisional	93.63
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.61
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.59
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.35
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.31
COG1707	218	ACT domain-containing protein [General function pr	93.2
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.1
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.75
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.65
PRK06635	404	aspartate kinase; Reviewed	92.62
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.37
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.27
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.06
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	91.92
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	91.81
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	91.54
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.14
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	91.0
PRK06291	465	aspartate kinase; Provisional	90.99
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.96
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	90.75
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.74
PRK06382	406	threonine dehydratase; Provisional	90.66
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	90.33
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.02
PRK08210	403	aspartate kinase I; Reviewed	89.62
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.47
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.18
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	89.17
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	88.86
PLN02551	521	aspartokinase	88.79
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	88.61
COG2150	167	Predicted regulator of amino acid metabolism, cont	88.17
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	88.08
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	87.57
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	87.42
PRK06382	406	threonine dehydratase; Provisional	87.01
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.77
PRK08818	370	prephenate dehydrogenase; Provisional	86.36
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.65
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.19
PRK12483	521	threonine dehydratase; Reviewed	85.1
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.03
PRK08198	404	threonine dehydratase; Provisional	84.64
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	84.58
PRK11898	283	prephenate dehydratase; Provisional	83.83
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.55
PRK08210	403	aspartate kinase I; Reviewed	83.49
PRK09084	448	aspartate kinase III; Validated	83.39
PRK09181	475	aspartate kinase; Validated	83.37
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	83.2
PRK09034	454	aspartate kinase; Reviewed	83.12
PRK06291	465	aspartate kinase; Provisional	83.07
PLN02317	382	arogenate dehydratase	82.95
PRK06545	359	prephenate dehydrogenase; Validated	82.77
COG4492	150	PheB ACT domain-containing protein [General functi	82.31
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	82.01
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	81.91
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	81.74
PLN02551	521	aspartokinase	81.55
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.34
PLN02317	382	arogenate dehydratase	80.34
PRK09181	475	aspartate kinase; Validated	80.19

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.1e-28  Score=267.82  Aligned_cols=174  Identities=17%  Similarity=0.237  Sum_probs=152.4

Q ss_pred             CCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHH
Q 015010          232 SAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDA  310 (414)
Q Consensus       232 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~  310 (414)
                      ..+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++. ++++++
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            4567888999999999999999999999999999999999999999999964 666999999995 8888884 678899


Q ss_pred             HHHHHHHHHcCCcceee---ecC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          311 LCSRLRMELLRPLRVAV---VNR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       311 l~~~L~~~l~~~~~~~~---~~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      |++.|+++|.++.....   .++     ..+|+|.|+       |+|||.|.|||||||+|+++|.++|++|++|||+| 
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-  818 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-  818 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-
Confidence            99999999987653221   111     236888875       59999999999999999999999999999999999 


Q ss_pred             eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                       .|++  ++|+|||+|.+|.|+++++ .++|+++|+.
T Consensus       819 -~ger--v~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~  851 (854)
T PRK01759        819 -IGEK--AEDFFILTNQQGQALDEEE-RKALKSRLLS  851 (854)
T ss_pred             -cCce--EEEEEEEECCCCCcCChHH-HHHHHHHHHH
Confidence             9999  9999999999999999764 4999988864

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.8e-28  Score=266.60  Aligned_cols=173  Identities=18%  Similarity=0.205  Sum_probs=150.7

Q ss_pred             CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010          233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL  311 (414)
Q Consensus       233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l  311 (414)
                      .+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++. ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~d~~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVLEPDGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence            567888999999999999999999999999999999999999999999975 445999999995 8888874 6788999


Q ss_pred             HHHHHHHHcCCccee-ee---cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          312 CSRLRMELLRPLRVA-VV---NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       312 ~~~L~~~l~~~~~~~-~~---~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      ++.|+++|.++.... ..   ++     ..+|+|.|+       |+|||.|.|||||||+|+++|.++|++|++|||+| 
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T-  843 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT-  843 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence            999999998763221 11   11     136788876       58999999999999999999999999999999999 


Q ss_pred             eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                       .|++  |+|+|||++.+|.|++++ .++.|+++|+.
T Consensus       844 -~ger--a~DvFyV~~~~g~~l~~~-~~~~l~~~L~~  876 (884)
T PRK05007        844 -IGER--VEDLFILATADRRALNEE-LQQELRQRLTE  876 (884)
T ss_pred             -cCce--EEEEEEEEcCCCCcCCHH-HHHHHHHHHHH
Confidence             9999  999999999999999965 57888888864

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=5.6e-27  Score=256.58  Aligned_cols=180  Identities=21%  Similarity=0.282  Sum_probs=154.6

Q ss_pred             CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      .+.++++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+.+.+++++++|++.|+++|.+.
T Consensus       673 ~~~~~t~V~V~~-~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~  751 (854)
T PRK01759        673 FSRGGTEIFIYC-QDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN  751 (854)
T ss_pred             CCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            344799999999 9999999999999999999999999999999999999999998887667789999999999999762


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM  265 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~  265 (414)
                      .          ..          ..+.. ..         +...++..+|.|.|+|+.+..+|+|+|.++|||||||+|+
T Consensus       752 ~----------~~----------~~~~~-~~---------~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~  801 (854)
T PRK01759        752 K----------LK----------KLNLE-EN---------HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVS  801 (854)
T ss_pred             C----------Cc----------chhcc-cc---------ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence            1          00          00010 00         1123467889999999999999999999999999999999


Q ss_pred             HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ++|.++|++|+.|+|.  |.|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus       802 ~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        802 QVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            9999999999999998  8999999999995 88999987555 99999998876

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=9.1e-27  Score=255.75  Aligned_cols=183  Identities=20%  Similarity=0.264  Sum_probs=156.9

Q ss_pred             CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      ...++++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+...+++++++|++.|+++|.+.
T Consensus       697 ~~~~~t~V~V~a-~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~  775 (884)
T PRK05007        697 ATRGGTEIFIWS-PDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS  775 (884)
T ss_pred             CCCCeEEEEEEe-cCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            344799999999 9999999999999999999999999999999999999999998877667789999999999999763


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM  265 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~  265 (414)
                      .          ..         .+  ..++..        ....++..+|.|.|+|+.++.+|+|+|.|+|||||||+|+
T Consensus       776 ~----------~~---------~~--~~~~~~--------~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~  826 (884)
T PRK05007        776 S----------PQ---------PP--KPRRLP--------AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVG  826 (884)
T ss_pred             C----------CC---------cc--cccccc--------cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence            1          00         00  000100        1123467889999999999999999999999999999999


Q ss_pred             HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      ++|.++|++|.+|+|.  |.|+++.|+|||+ .+|.+++ +++++.|++.|.++|..
T Consensus       827 ~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        827 KIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999998  7999999999996 8889887 67889999999999864

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=3.3e-26  Score=251.40  Aligned_cols=184  Identities=16%  Similarity=0.254  Sum_probs=156.7

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHccc
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH--TRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~--~~~~~~~i~~~L~~~l~~~  185 (414)
                      .+.++|.|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.++.+.++  +++++++|++.|.++|.+.
T Consensus       702 ~~~t~V~V~~-~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYA-PDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            4789999999 999999999999999999999999999999999999999999887753  4689999999999999763


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM  265 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~  265 (414)
                      .          ..          +..+..+..        ....++..+|.|.++++.+.++|+|+|+++||||||++|+
T Consensus       781 ~----------~~----------~~~~~~~~~--------~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~  832 (895)
T PRK00275        781 D----------DY----------PTIIQRRVP--------RQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIG  832 (895)
T ss_pred             C----------cc----------chhhhhhhh--------hhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHH
Confidence            1          10          000111100        0113456789999999999999999999999999999999


Q ss_pred             HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      ++|+.+|+||++|+|+|  .|+++.|+|||. .+|.++.+++++++|++.|.++|..+
T Consensus       833 ~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        833 RIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999994  488999999996 88999988889999999999999755

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3.4e-25  Score=242.46  Aligned_cols=181  Identities=18%  Similarity=0.239  Sum_probs=151.3

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccc
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTL  186 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~  186 (414)
                      ..+.++|+|++ +||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+...+++++++|++.|+++|.+..
T Consensus       675 ~~~~~~v~i~~-~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~  753 (856)
T PRK03059        675 AGEGLQVMVYT-PDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA  753 (856)
T ss_pred             CCCeEEEEEEe-cCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC
Confidence            34789999999 99999999999999999999999999999999999999999987765567899999999999997631


Q ss_pred             ccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHH
Q 015010          187 ISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMR  266 (414)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~  266 (414)
                                ..          +..+.++..        .+..++..++.|.+++..+.++|+|+|+++||||||++|++
T Consensus       754 ----------~~----------~~~~~~~~~--------~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~  805 (856)
T PRK03059        754 ----------PL----------PEPSKGRLS--------RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR  805 (856)
T ss_pred             ----------Cc----------chhhccccc--------ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence                      00          000111100        11234678899999999999999999999999999999999


Q ss_pred             HHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          267 TLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       267 ~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      +|+.+|+||++|+|+|  .|+++.|+|+|+  +.++.+++++++|++.|.++|+
T Consensus       806 ~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        806 VLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999995  477999999994  3335577889999999988874

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=4.8e-25  Score=240.82  Aligned_cols=179  Identities=18%  Similarity=0.226  Sum_probs=150.4

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI  187 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~  187 (414)
                      .+.++|+|++ +||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+..  .+++.+|++.|+++|.+.. 
T Consensus       688 ~~~~~v~v~~-~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~-  763 (869)
T PRK04374        688 NDALEVFVYS-PDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL-  763 (869)
T ss_pred             CCeEEEEEEe-CCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-
Confidence            3689999999 99999999999999999999999999999999999999999987753  4678889999999998631 


Q ss_pred             cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010          188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT  267 (414)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~  267 (414)
                               ..          +. +.++..       .+...++..+|+|.+++..+.++|+|+|++.||||||++|+++
T Consensus       764 ---------~~----------~~-~~~~~~-------~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~  816 (869)
T PRK04374        764 ---------QK----------VR-PARRAV-------PRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHV  816 (869)
T ss_pred             ---------Cc----------cc-cccccC-------cccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHH
Confidence                     10          00 011100       0112356788999999999999999999999999999999999


Q ss_pred             HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 015010          268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      |+++|+||++|+|+  |.|+++.|+|||+ .+|.++.++++ +.|++.|.++|.
T Consensus       817 l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        817 LRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999999  4588999999995 88888776555 999999998884

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=5.3e-25  Score=242.28  Aligned_cols=173  Identities=16%  Similarity=0.151  Sum_probs=151.1

Q ss_pred             CeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010          234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC  312 (414)
Q Consensus       234 ~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~  312 (414)
                      .+.|.+.+....++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            46788888777999999999999999999999999999999999999974 677999999996 8888888878899999


Q ss_pred             HHHHHHHcCCccee--e-----ecC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEe
Q 015010          313 SRLRMELLRPLRVA--V-----VNR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIG  373 (414)
Q Consensus       313 ~~L~~~l~~~~~~~--~-----~~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~  373 (414)
                      +.|.++|.+.....  .     .++     ..+|+|.|+       |.|+|.|.|||||||+|+++|.++|++|++|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            99999998754211  0     011     136788775       5999999999999999999999999999999999


Q ss_pred             cceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          374 RYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       374 T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                      |  .|++  ++|+|||++..|.|++++ .++.|+++|+.
T Consensus       814 t--~~~~--~~d~F~v~~~~g~~~~~~-~~~~l~~~L~~  847 (850)
T TIGR01693       814 T--FGEK--AEDVFYVTDLFGLKLTDE-EEQRLLEVLAA  847 (850)
T ss_pred             e--cCcc--ceeEEEEECCCCCCCCHH-HHHHHHHHHHH
Confidence            9  9999  999999999999999985 68999998864

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=9.9e-25  Score=239.75  Aligned_cols=173  Identities=14%  Similarity=0.245  Sum_probs=143.7

Q ss_pred             CeEEEEecCCC---CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCC-ChHHH
Q 015010          234 PVSIAVDNSFS---PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIV-DPSKQ  308 (414)
Q Consensus       234 ~~~V~v~~~~~---~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~-~~~~~  308 (414)
                      .+.|.+.+...   .++|.|.|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|.++. +++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEeCCCCCCccchHHHH
Confidence            34555766664   589999999999999999999999999999999999976 555999999995 8888754 45789


Q ss_pred             HHHHHHHHHHHcCCccee--eec---C-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEE
Q 015010          309 DALCSRLRMELLRPLRVA--VVN---R-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       309 ~~l~~~L~~~l~~~~~~~--~~~---~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      ++|++.|.++|.++....  +..   +     ..++.|.+.       +.|+|+|.||||||++|+.+|.++|++|++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            999999999998775321  111   1     124666554       58999999999999999999999999999999


Q ss_pred             EecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          372 IGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       372 I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                      |.|  .|++  ++|+|||+|.+|.+++++..+++|+++|.
T Consensus       847 I~T--~g~~--v~D~F~V~d~~g~~l~~~~~~~~l~~~L~  882 (895)
T PRK00275        847 IAT--LGER--VEDVFFITDADNQPLSDPQLCSRLQDAIC  882 (895)
T ss_pred             EEe--cCCE--EEEEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence            999  8999  99999999999999986445677777765

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.6e-24  Score=238.51  Aligned_cols=184  Identities=22%  Similarity=0.304  Sum_probs=153.8

Q ss_pred             CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHcc
Q 015010          106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH-TRKRREETIHHLEAVLGK  184 (414)
Q Consensus       106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~~~~~i~~~L~~~l~~  184 (414)
                      .+.+.++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+... +++++++|++.|.++|.+
T Consensus       664 ~~~~~t~i~V~~-~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~  742 (850)
T TIGR01693       664 RPSGGTEVFIYA-PDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG  742 (850)
T ss_pred             CCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence            345799999999 999999999999999999999999999889999999999999887754 566899999999999976


Q ss_pred             ccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHH
Q 015010          185 TLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDM  264 (414)
Q Consensus       185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i  264 (414)
                      ..     ..  +..             +.++..   .   ..+..++..+|.|.|+|+.++.+|+|+|.|+||||||++|
T Consensus       743 ~~-----~~--~~~-------------~~~~~~---~---~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i  796 (850)
T TIGR01693       743 LA-----KD--PDT-------------ISARRA---R---RRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARV  796 (850)
T ss_pred             CC-----cc--ccc-------------cccccC---C---cccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHH
Confidence            31     00  000             111100   0   0112346688999999999999999999999999999999


Q ss_pred             HHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          265 MRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       265 ~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      +++|+++|++|.+|+|.  |.|+++.|+|+++ ..|.|+.+ ++++.|+++|.++|
T Consensus       797 ~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       797 GRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999998  6788999999996 78898876 78899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=3.1e-24  Score=237.79  Aligned_cols=187  Identities=25%  Similarity=0.376  Sum_probs=157.6

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHccc
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELL-HTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~~~~~i~~~L~~~l~~~  185 (414)
                      ..+.++|+|++ +||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.+.+ .+++++++|++.|+.++.+.
T Consensus       729 ~~~~t~v~I~~-~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~  807 (931)
T PRK05092        729 ARGVTEVTVLA-ADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE  807 (931)
T ss_pred             CCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            34789999999 99999999999999999999999999999999999999999987764 46789999999999999753


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM  265 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~  265 (414)
                      .          ..          +..+.++..      .+....++..+|.|.|+|+.+.++|+|+|+++||||||++|+
T Consensus       808 ~----------~~----------~~~~~~r~~------~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~  861 (931)
T PRK05092        808 V----------RL----------PEALAKRTK------PKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLT  861 (931)
T ss_pred             C----------CC----------ccccccccC------ccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHH
Confidence            1          00          000111100      000123467789999999999999999999999999999999


Q ss_pred             HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      ++|+++|+||.+|+|.  |.|+++.|+|+|+ .+|.++.++++++.|++.|.++|.++
T Consensus       862 ~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        862 RALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             HHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999  5688999999996 88999988888999999999999765

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=5.5e-24  Score=232.57  Aligned_cols=169  Identities=14%  Similarity=0.197  Sum_probs=140.8

Q ss_pred             eEEEE-ecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010          235 VSIAV-DNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC  312 (414)
Q Consensus       235 ~~V~v-~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~  312 (414)
                      +.|.+ ...+..+.+.|.|+++||||||++||++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|.+   ++++.+++
T Consensus       677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~~~~---~~~~~~i~  752 (869)
T PRK04374        677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQDTYA---DGDPQRLA  752 (869)
T ss_pred             CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence            34444 33677799999999999999999999999999999999999976 455999999996 66654   35688899


Q ss_pred             HHHHHHHcCCccee-ee----cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          313 SRLRMELLRPLRVA-VV----NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       313 ~~L~~~l~~~~~~~-~~----~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      +.|+++|.++.... ..    ++     ..+|+|.++       +.|+|.|.|||||||+|+.+|.++|++|++|+|+| 
T Consensus       753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T-  831 (869)
T PRK04374        753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT-  831 (869)
T ss_pred             HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe-
Confidence            99999998764311 11    11     135777765       59999999999999999999999999999999999 


Q ss_pred             eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                       .|++  ++|+|||+|.+|.+++++++ +.|+++|+.
T Consensus       832 -~g~~--a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~  864 (869)
T PRK04374        832 -FGER--AEDQFQITDEHDRPLSESAR-QALRDALCA  864 (869)
T ss_pred             -cCCE--EEEEEEEECCCCCcCChHHH-HHHHHHHHH
Confidence             8999  99999999999999887644 888888864

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=6.6e-24  Score=221.24  Aligned_cols=172  Identities=17%  Similarity=0.216  Sum_probs=143.2

Q ss_pred             CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010          233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL  311 (414)
Q Consensus       233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l  311 (414)
                      ..|.|.+.+.+..+.|+|.|+++|+|.||+.++.++...|.||++|+|+|+.+| +++|+|+|. ++|.++. +.+...+
T Consensus       670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG-~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC-ceeeeEEEecCCCCccc-hhHHHHH
Confidence            446777777777899999999999999999999999999999999999987555 999999995 8999876 6788888


Q ss_pred             HHHHHHHHcCCcce-e---eecCC-----CCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          312 CSRLRMELLRPLRV-A---VVNRG-----PDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       312 ~~~L~~~l~~~~~~-~---~~~~~-----~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      +..|.+++...... .   ..++.     ++|+|.+.       +.|||.+.||||||++|+++|.+++++|++|||+| 
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT-  826 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT-  826 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence            88888888654322 1   00111     25777664       59999999999999999999999999999999999 


Q ss_pred             eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                       .|||  ++|+|||++..|.+++.+ ....+.+.|.
T Consensus       827 -~GEr--veD~F~vt~~~~~~l~~~-~~q~l~~~ll  858 (867)
T COG2844         827 -FGER--VEDVFIVTDADGQALNAE-LRQSLLQRLL  858 (867)
T ss_pred             -cccc--ceeEEEEeccccccCCHH-HHHHHHHHHH
Confidence             9999  999999999999999865 4455555443

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.1e-23  Score=226.41  Aligned_cols=175  Identities=21%  Similarity=0.285  Sum_probs=141.2

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI  187 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~  187 (414)
                      .+.++|+|+| +||||||++|+++|+.+||||++|+|+| .+|+++|+|+|.++.+.++   .++++++.|++++.+.. 
T Consensus       597 ~~~~~V~V~~-~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-  670 (774)
T PRK03381        597 PHMVEVTVVA-PDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-  670 (774)
T ss_pred             CCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-
Confidence            5789999999 9999999999999999999999999999 9999999999998776532   36889999999997621 


Q ss_pred             cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010          188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT  267 (414)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~  267 (414)
                               ..          ...+.++.... .   .....++..++.|.+++..+.++|+|+|+++||||||++|+++
T Consensus       671 ---------~~----------~~~~~~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~  727 (774)
T PRK03381        671 ---------DV----------LARLAAREAAA-A---AVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARA  727 (774)
T ss_pred             ---------ch----------hhhhhcccccc-c---ccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHH
Confidence                     00          00011110000 0   0112346678899999999999999999999999999999999


Q ss_pred             HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHH
Q 015010          268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRL  315 (414)
Q Consensus       268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L  315 (414)
                      |+++|+||.+|+|+  |.|+++.|+|||. .+|.++.++  ++.|++.|
T Consensus       728 L~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        728 LERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             HHHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            99999999999999  4588999999996 889988764  66776665

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-23  Score=218.49  Aligned_cols=180  Identities=21%  Similarity=0.254  Sum_probs=152.7

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI  187 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~  187 (414)
                      ++.++|.|++ +|+|.||+.+++.+...|+||++|+|+|+.+|+++|+|+|+++.|.++++.+...++..|.+++.... 
T Consensus       682 ~~~teV~V~a-~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~-  759 (867)
T COG2844         682 SGGTEVFVYA-PDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK-  759 (867)
T ss_pred             CCceEEEEEc-CCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC-
Confidence            3689999999 99999999999999999999999999999999999999999999988888888888888888876411 


Q ss_pred             cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010          188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT  267 (414)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~  267 (414)
                                .         .|+ ...+.        .++..+|+.+|.|.|.+..+..+|+++|.+.||||||++++++
T Consensus       760 ----------~---------~~~-~~~r~--------~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v  811 (867)
T COG2844         760 ----------A---------QPP-RRRRI--------PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGV  811 (867)
T ss_pred             ----------C---------CCc-ccccc--------CcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHH
Confidence                      1         010 00010        1234578899999999999999999999999999999999999


Q ss_pred             HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 015010          268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      |++++++|++|+|.  |.|+++.|+|||+ ..|.+++ ++..+.+.+.|.+++.
T Consensus       812 ~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         812 FADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             HHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence            99999999999998  8999999999996 8888885 4566667777766664

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=6.5e-23  Score=227.26  Aligned_cols=174  Identities=22%  Similarity=0.339  Sum_probs=147.5

Q ss_pred             CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010          233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL  311 (414)
Q Consensus       233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l  311 (414)
                      .++.|.+.+..+.++|.|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. .+|.+..+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~-~dg~alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT-TDGRALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe-cCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence            457788888888999999999999999999999999999999999999975 566899999995 778877778899999


Q ss_pred             HHHHHHHHcCCccee--e----ec--C----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEE
Q 015010          312 CSRLRMELLRPLRVA--V----VN--R----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEI  372 (414)
Q Consensus       312 ~~~L~~~l~~~~~~~--~----~~--~----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I  372 (414)
                      ++.|.+++.+...+.  +    .+  +    ..+|+|.++       +.|+|.+.||||||++|+++|.++|++|.+|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            999999997653211  1    01  1    125677665       489999999999999999999999999999999


Q ss_pred             ecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          373 GRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       373 ~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                      .|  .|++  ++|+|||++.+|.++.+++.++.|++.|.
T Consensus       877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~  911 (931)
T PRK05092        877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALL  911 (931)
T ss_pred             EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHH
Confidence            99  8999  99999999999999986544666766664

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=6.2e-23  Score=222.76  Aligned_cols=166  Identities=16%  Similarity=0.170  Sum_probs=139.4

Q ss_pred             CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010          233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL  311 (414)
Q Consensus       233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l  311 (414)
                      .++.|.+.+.. .+.+.|+|+++||||||++|+++|+.+|+||.+|+|+|  .++.+.|+|+|. ++|.+.    .++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l  658 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALL  658 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHH
Confidence            34677787777 89999999999999999999999999999999999995  555999999996 666543    25789


Q ss_pred             HHHHHHHHcCCccee----eec-----CC-----CCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEE
Q 015010          312 CSRLRMELLRPLRVA----VVN-----RG-----PDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       312 ~~~L~~~l~~~~~~~----~~~-----~~-----~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A  370 (414)
                      ++.|++++.++..+.    ..+     +.     .++.+.++       +.|+|.|.|||||||+||++|.++|+||+.|
T Consensus       659 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~A  738 (774)
T PRK03381        659 RQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWA  738 (774)
T ss_pred             HHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEE
Confidence            999999998763211    000     11     13455443       6999999999999999999999999999999


Q ss_pred             EEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          371 EIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       371 ~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                      +|.|  .|++  ++|+|||+|.+|.+++++  ++.|+++|+
T Consensus       739 kI~T--~g~~--a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        739 RVAT--LGAD--VVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             EEee--cCCe--EEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            9999  8999  999999999999999865  799999986

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=1.2e-22  Score=222.57  Aligned_cols=170  Identities=14%  Similarity=0.148  Sum_probs=138.7

Q ss_pred             CeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010          234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC  312 (414)
Q Consensus       234 ~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~  312 (414)
                      .+.|.+.+.+..+.+.|.|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|. ..+++++++|+
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            45566888888899999999999999999999999999999999999976 444899999995 6665 45678899999


Q ss_pred             HHHHHHHcCCccee--ee---cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          313 SRLRMELLRPLRVA--VV---NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       313 ~~L~~~l~~~~~~~--~~---~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      +.|+++|.++....  ..   ++     ..++.+.+.       +.|+|.+.|||||||+|+.+|.++|++|++|+|.| 
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T-  821 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT-  821 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence            99999998764321  11   11     124556553       59999999999999999999999999999999999 


Q ss_pred             eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                       .|++  ++|+|||.+   .++.+.+.+++|++.|..
T Consensus       822 -~~~~--v~DvF~V~~---~~~~~~~~~~~l~~~L~~  852 (856)
T PRK03059        822 -LGER--VEDTFLIDG---SGLSDNRLQIQLETELLD  852 (856)
T ss_pred             -cCCE--EEEEEEEcC---CCCCCHHHHHHHHHHHHH
Confidence             8999  999999954   344443467888888753

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=2.1e-20  Score=142.22  Aligned_cols=69  Identities=14%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                      ++|||.+.|||||||+|+++|+++|++|++|||+|  .|++  ++|+|||+|.+|+|+++++.++.|+++|+.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Ger--v~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGW--FMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCe--EEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            68999999999999999999999999999999999  9999  999999999999999876578999999974

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=3.1e-20  Score=142.33  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=64.2

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                      ++|||.|.|||||||+|+++|.++|++|++|+|+|  .|++  ++|+|||+|.+|.|++++..+++|+++|.
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~ger--a~D~FyV~d~~g~kl~~~~~~~~l~~~L~   69 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDD--AHQEYYIRHKDGRTLSTEGERQRVIKCLE   69 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCce--EEEEEEEEcCCCCccCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999  9999  99999999999999987667888888875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=3.6e-20  Score=132.45  Aligned_cols=66  Identities=74%  Similarity=1.536  Sum_probs=63.4

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCC---CCHHHHHHHHHHhCC
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT---TRWSLLKNRLLEVCP   86 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g---~~~~~l~~~l~~~~~   86 (414)
                      ++|+|+||||.||.+|+|+++.+|||+|.++++||||+||+.+|||.++..   .+|.+|++||.++||
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP   69 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP   69 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence            479999999999999999999999999999999999999999999999885   899999999999986

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=1.1e-18  Score=133.83  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=70.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      +|+|+|.|+|||||||+|+++|+++|++|++|+|.  |.|+++.|+|||. .+|.|+.++++++.|+++|.++|.++
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999999999999998  7999999999995 89999999999999999999999763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=1e-18  Score=133.92  Aligned_cols=68  Identities=19%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEe--cceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIG--RYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG  412 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~--T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~  412 (414)
                      |.+||.|.|||||||+|+++|+++|++|++|||+  |  .|++  ++|+||| +.+|+|+++++.++.|+++|+.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T--~Ger--v~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV--KGYR--EVDLFIV-QSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc--ccCE--EEEEEEE-eCCCCccCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999  9  9999  9999999 8999999875567888888763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=1.9e-17  Score=126.90  Aligned_cols=75  Identities=63%  Similarity=0.991  Sum_probs=70.0

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      |+++|.|+|||||||+|+++|+++|++|++|+|.+.|.|+++.|+||++.+|.++.++++++.|+++|.+++.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            579999999999999999999999999999999866899999999999877888999999999999999999765

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2.6e-16  Score=119.80  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=63.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~  316 (414)
                      +|+|+|.++|||||||+|+++|+++|++|+.|+|.  |.|+++.|+|||+ .+|.|+.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999998  7999999999996 88999999888888888774

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.64  E-value=2e-15  Score=117.18  Aligned_cols=72  Identities=82%  Similarity=1.204  Sum_probs=67.0

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      .++|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+...++++++++++.|.++|+.
T Consensus         2 ~~ei~~-~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFC-SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEE-CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            689999 999999999999999999999999999989999999999999877656778999999999999864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=5.5e-15  Score=113.81  Aligned_cols=71  Identities=28%  Similarity=0.367  Sum_probs=64.4

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH-TRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~~~~~i~~~L~~~l  182 (414)
                      ++|+|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+... ++++++++++.|.++|
T Consensus         2 ~~i~v~~-~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYT-PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEe-cCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            6899999 999999999999999999999999999988999999999998777654 6789999999988764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=2.1e-14  Score=110.90  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=64.5

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCC-CC-CCCHHHHHHHHHHHHHHHc
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-EL-LHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~-~~-~~~~~~~~~i~~~L~~~l~  183 (414)
                      |.|+|++ +||||||++|+++|+.+||||++|+++| .+++++|+|+|+++. +. ..+++++++|++.|.++|.
T Consensus         1 t~~~v~~-~Dr~gLl~~i~~~l~~~~lnI~~A~i~t-~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTG-TDRPGLLSEVFAVLADLHCNVVEARAWT-HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEE-CCCCCHHHHHHHHHHHCCCcEEEEEEEE-ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999 9999999999999999999999999999 599999999999876 54 3577899999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.56  E-value=2.8e-14  Score=110.20  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCC-CCCCCchHHHHHHHHHHc
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEAD-GNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~-g~~l~~~~~~~~i~~~L~  411 (414)
                      ++|||.+.||||||++|+++|.++|+||+.|+|.|  .|++  +.|+|||+|++ |.++.+++.+++|++.|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~--~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~   69 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGR--LACVIYVRDEETGAPIDDPIRLASIEDRLD   69 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCE--EEEEEEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999  8999  99999999998 888876546788888775

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.56  E-value=4e-14  Score=109.02  Aligned_cols=71  Identities=23%  Similarity=0.359  Sum_probs=63.3

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      +.|+|+++||||||++++++|+.+|+||.+|+|+|. .++++.|+|++. ++|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999964 556999999995 77888877888999999987754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=3.7e-15  Score=111.22  Aligned_cols=73  Identities=67%  Similarity=1.041  Sum_probs=67.6

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC----chHHHHHHHHHHccC
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP----RNKIEDLVRKILMGW  413 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~----~~~~~~~i~~~L~~~  413 (414)
                      |++|++|+.||.++||||.||+.+|++|++|+|..++.++++|+++.|++.+..+. ++    .+++++++++.||||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999999999999999999999999999999887554 65    567899999999999

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.53  E-value=9.9e-14  Score=107.63  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=62.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      .++|+++||||||++++++|+++|+||.+|+|+|+ .++++.|+|+|. ++|. ..++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence            58999999999999999999999999999999964 677999999995 6555 55678899999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.47  E-value=1.9e-12  Score=117.54  Aligned_cols=135  Identities=9%  Similarity=0.104  Sum_probs=92.1

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS  188 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~  188 (414)
                      .+++|++.| +||||+.+.|+++|+++||||.+.+... .+|.+.-++.|+.+      +...++++..|...-...   
T Consensus         7 ~~lviTviG-~DrpGIVa~vs~~l~~~g~NI~ds~~t~-lgg~Fa~i~lvs~~------~~~~~~le~~L~~l~~~~---   75 (190)
T PRK11589          7 HYLVITALG-ADRPGIVNTITRHVSSCGCNIEDSRLAM-LGEEFTFIMLLSGS------WNAITLIESTLPLKGAEL---   75 (190)
T ss_pred             cEEEEEEEc-CCCChHHHHHHHHHHHcCCCeeehhhHh-hCCceEEEEEEeCC------hhHHHHHHHHHHhhhhhc---
Confidence            588999999 9999999999999999999999999998 67776667888542      335556655555433210   


Q ss_pred             ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHH
Q 015010          189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTL  268 (414)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L  268 (414)
                              .+              ...+..       ....   .       .......+.++|++.||||++++++++|
T Consensus        76 --------~L--------------~i~v~~-------~~~~---~-------~~~~~~~~~v~v~G~DrPGIV~~vT~~l  116 (190)
T PRK11589         76 --------DL--------------LIVMKR-------TTAR---P-------RPAMPATVWVQVEVADSPHLIERFTALF  116 (190)
T ss_pred             --------Ce--------------EEEEEe-------cccc---c-------cccCCceEEEEEEECCCCCHHHHHHHHH
Confidence                    00              001100       0000   0       0001113689999999999999999999


Q ss_pred             HhCCceEEeEEEEEeeCCC--EEEEEEEE
Q 015010          269 KDYNTQVSYGRFFAKPRGN--CEVDLFIM  295 (414)
Q Consensus       269 ~~~~l~I~~A~I~t~t~g~--~~~D~F~v  295 (414)
                      +++|+||.+  +.|.+.+.  ...+.|..
T Consensus       117 a~~~iNI~~--L~T~~~~a~~~~~~lf~~  143 (190)
T PRK11589        117 DSHHMNIAE--LVSRTQPAEGERPAQLHI  143 (190)
T ss_pred             HHcCCChhh--eEEeeecCCCCCcccEEE
Confidence            999999997  55445542  44555654

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.44  E-value=9.5e-13  Score=98.96  Aligned_cols=66  Identities=24%  Similarity=0.373  Sum_probs=56.4

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      .+|.|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+..+.     .-+.+++.|+++|
T Consensus         2 ~eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence            5799999 9999999999999999999999999999999999999999986552     2244656665554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.40  E-value=9.9e-12  Score=112.85  Aligned_cols=155  Identities=12%  Similarity=0.107  Sum_probs=103.7

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-Ccc
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR-PLR  324 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-~~~  324 (414)
                      .+.+|++.++|||||+++++++|+++|+||.+.+..  ..|+.+.-++.+.  +.    ......|+..|...-+. .+.
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDLL   78 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCeE
Confidence            578999999999999999999999999999998886  5666666666664  21    23566777777554422 332


Q ss_pred             eeeec--CCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEE----EEEEEcCCCCCCC
Q 015010          325 VAVVN--RGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVY----RILLDEADGNLEP  398 (414)
Q Consensus       325 ~~~~~--~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d----~Fyv~d~~g~~l~  398 (414)
                      +.+..  ............++|.+.||||++++||++|+++|+||..-+..|  ++...+..+    .|.+.-+.+..+.
T Consensus        79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~--~~a~~~~~~lf~~~~~v~lP~~~~~~  156 (190)
T PRK11589         79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT--QPAEGERPAQLHIQITAHSPASQDAA  156 (190)
T ss_pred             EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee--ecCCCCCcccEEEEEEEEcCCCCCHH
Confidence            22211  110111111248999999999999999999999999999998888  553111333    4445556665554


Q ss_pred             c-hHHHHHHHHHH
Q 015010          399 R-NKIEDLVRKIL  410 (414)
Q Consensus       399 ~-~~~~~~i~~~L  410 (414)
                      . ....+.+.++|
T Consensus       157 ~L~~~l~~l~~eL  169 (190)
T PRK11589        157 NIEQAFKALCTEL  169 (190)
T ss_pred             HHHHHHHHHHHHh
Confidence            2 11245555554

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.31  E-value=3.1e-11  Score=128.90  Aligned_cols=144  Identities=14%  Similarity=0.161  Sum_probs=114.2

Q ss_pred             EEEEEEe-cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 015010          248 TLIQILG-QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRPLRV  325 (414)
Q Consensus       248 t~v~V~~-~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~~~~  325 (414)
                      ..++|.. +|+||+|.+++++|+.++++|.+|++.  +.| .+...|.|. ..|.+. ++   ..+++.+..++.+.+.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~~~-~~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--ANG-PWSAEFDVRANGPQDF-DP---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--cCC-ceEEEEEEecCCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence            4677888 999999999999999999999999998  344 778999997 556553 33   56888888888887554


Q ss_pred             eeecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHH
Q 015010          326 AVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDL  405 (414)
Q Consensus       326 ~~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~  405 (414)
                      .  ..+++..+++.+++||++.||||+|+.|+++|-    .|..|+++|  .|..  ++|.||+..  |  .++.++...
T Consensus       620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~~--~--~~r~~~~~~  685 (693)
T PRK00227        620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALKP--G--FDRATVERD  685 (693)
T ss_pred             c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEecC--c--ccHHHHHHH
Confidence            2  223345567779999999999999999999999    899999999  9999  999999982  2  234445566


Q ss_pred             HHHHHcc
Q 015010          406 VRKILMG  412 (414)
Q Consensus       406 i~~~L~~  412 (414)
                      |.+.|.+
T Consensus       686 ~~~~~~~  692 (693)
T PRK00227        686 VTRVLAG  692 (693)
T ss_pred             HHHHHhc
Confidence            6666543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=2.3e-11  Score=93.29  Aligned_cols=67  Identities=21%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM  411 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~  411 (414)
                      +.++|.+.||||+|++|+.+|+++|+||.+|+|.|  .+++  +.|+|+|.+++|.+++.+ ..++|++.|+
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~--~~d~f~v~~~~~~~~~~~-~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDM--AVNVFYVTDANGNPVDPK-TIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCe--EEEEEEEECCCCCcCCHH-HHHHHHHHhc
Confidence            37899999999999999999999999999999999  7777  999999999999988544 6899999886

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=3e-11  Score=92.72  Aligned_cols=67  Identities=31%  Similarity=0.439  Sum_probs=57.6

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      +.|+|.+ +||||+|++|+++|+.+|+||++|+++| .+++++|+|+|.++.+...++++++++++.|-
T Consensus         2 tri~V~~-~D~~Gll~~i~~~l~~~~lnI~sa~i~t-~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRT-EDRVGLLSDVTRVFRENGLTVTRAEIST-QGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEE-CCccCHHHHHHHHHHHCCcEEEEEEEec-CCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            6899999 9999999999999999999999999998 57799999999987766446667776665553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.29  E-value=3.5e-11  Score=128.53  Aligned_cols=142  Identities=16%  Similarity=0.048  Sum_probs=112.8

Q ss_pred             EEEEeC-CCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCC--CCHHHHHHHHHHhCCCCCcCCcccccc
Q 015010           22 VITVNC-PDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT--TRWSLLKNRLLEVCPSYFSTSRIYSYR   98 (414)
Q Consensus        22 ~v~v~~-~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g--~~~~~l~~~l~~~~~~~~~~~~~~~~~   98 (414)
                      .|+|.. ||++|++.+++++|+.++++|++|.+.++|. +...|.|.+.+|  ++...|++.+.....+..+.....+++
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (693)
T PRK00227        548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGP-WSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGITA  626 (693)
T ss_pred             eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCc-eEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCCc
Confidence            455555 9999999999999999999999999999655 579999999998  899999999987665544321101111


Q ss_pred             cccccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 015010           99 LENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL  178 (414)
Q Consensus        99 ~~~~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L  178 (414)
                             .....++++|.+ .||+|+|+.++++|.    +|.+|++.| .+..++|.|++.+.       ..+.+++..+
T Consensus       627 -------~~~~~~~~e~r~-~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~-------~~r~~~~~~~  686 (693)
T PRK00227        627 -------TFWHGNILEVRT-EDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPG-------FDRATVERDV  686 (693)
T ss_pred             -------eEeeCcEEEEEe-CccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCc-------ccHHHHHHHH
Confidence                   111237999999 999999999999999    999999999 89999999999842       1346677777


Q ss_pred             HHHHcc
Q 015010          179 EAVLGK  184 (414)
Q Consensus       179 ~~~l~~  184 (414)
                      ..+|.+
T Consensus       687 ~~~~~~  692 (693)
T PRK00227        687 TRVLAG  692 (693)
T ss_pred             HHHHhc
Confidence            777643

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.24  E-value=5.8e-11  Score=89.29  Aligned_cols=64  Identities=23%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCCCHHHHHHHHHHh
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTTRWSLLKNRLLEV   84 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~   84 (414)
                      .+|.|.++|+||||++++++|+.+||+|++|+|. |.+||++|+|+|.+..|-+..-|.+.++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~~~~~~~~~~~~   66 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGETAALGHALQKE   66 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccchHHHHHHHHHh
Confidence            4789999999999999999999999999999998 578899999999999998887787777653

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.24  E-value=9.3e-11  Score=89.02  Aligned_cols=70  Identities=37%  Similarity=0.496  Sum_probs=62.4

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      |.|+|.+ +||||+|++|+++|+.+|+||.++++.| .+++++|+|++.+..+.+.+.+++++|++.|.+++
T Consensus         1 ~~l~v~~-~d~~gll~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTA-LDRPGLLADVTRVLAELGLNIHSAKIAT-LGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEE-cCCccHHHHHHHHHHHCCCeEEEEEEEe-cCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            4789999 9999999999999999999999999998 55699999999998776667789999999887753

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.13  E-value=5.6e-10  Score=84.66  Aligned_cols=69  Identities=29%  Similarity=0.517  Sum_probs=59.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      |.+.|.++|+||+|++|+++|++++++|.++++.  +.++.+.|+|++. .+|.+ .+.+++++|+++|+++|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999998  4455999999996 77777 45678899999987654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.01  E-value=2.6e-09  Score=93.24  Aligned_cols=157  Identities=13%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS  188 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~  188 (414)
                      ++++|++++ +||||+...|+++..++||||.++|+.+ .++.+.-+..++.+      ++...    .|+..|....  
T Consensus         4 ~~LvItavg-~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisgs------~dav~----~le~~l~~l~--   69 (176)
T COG2716           4 HYLVITAVG-ADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISGS------WDAVT----LLEATLPLLG--   69 (176)
T ss_pred             cEEEEEEec-CCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEeeC------HHHHH----HHHHHhhccc--
Confidence            358999999 9999999999999999999999999999 67766667778763      33334    4455554321  


Q ss_pred             ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHH
Q 015010          189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTL  268 (414)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L  268 (414)
                             .+.     |       |.-.|.       ++..    .+      .......+.+.|.+.||||++.+++..|
T Consensus        70 -------~~~-----~-------L~v~m~-------rt~~----~~------~~a~~~~v~v~v~a~DrpgIv~~~T~lf  113 (176)
T COG2716          70 -------AEL-----D-------LLVVMK-------RTGA----HP------TPANPAPVWVYVDANDRPGIVEEFTALF  113 (176)
T ss_pred             -------ccC-----C-------eEEEEe-------ecCC----Cc------cCCCCceEEEEEEecCCccHHHHHHHHH
Confidence                   000     0       111221       1100    00      1223345689999999999999999999


Q ss_pred             HhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHH
Q 015010          269 KDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       269 ~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      ..+|+||.+-.-.+....+.-...|..+ .-+-|..  -....|++.+++
T Consensus       114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~a  161 (176)
T COG2716         114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEA  161 (176)
T ss_pred             HhcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHH
Confidence            9999999863333222333566778765 3333332  234567776644

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.92  E-value=1.5e-08  Score=76.49  Aligned_cols=68  Identities=34%  Similarity=0.569  Sum_probs=59.4

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      .|.|.+ +|+||+|++++++|+++|++|.++.+.+..+ +..++|++.++.+...+++++++|++.|.++
T Consensus         2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYA-PDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEe-CCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            688999 9999999999999999999999999999544 9999999998766555667889898888764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.80  E-value=5.8e-08  Score=73.16  Aligned_cols=67  Identities=25%  Similarity=0.505  Sum_probs=56.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRME  318 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~  318 (414)
                      .+.|.++|+||+|++++++|+.+|++|.++++.+  .++...+.|++. +++.. .++++++++++.|..+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            6889999999999999999999999999999984  334899999996 66665 4567888888888664

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.78  E-value=6e-08  Score=84.77  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=94.8

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC--c
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP--L  323 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~--~  323 (414)
                      .|.+|++.+.||||+.-.+++...+.|.||..+++.  ..|+.+.-+..+  .|.    .+...+|++.|.. +..+  +
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~li--sgs----~dav~~le~~l~~-l~~~~~L   74 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLI--SGS----WDAVTLLEATLPL-LGAELDL   74 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEE--eeC----HHHHHHHHHHhhc-ccccCCe
Confidence            568999999999999999999999999999999998  566444333333  332    3445667666633 3332  2


Q ss_pred             ceeeecCCCCc-e-eeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecce-eCceeeEEEEEEEEcCCCCCCC
Q 015010          324 RVAVVNRGPDA-E-LLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYM-IHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       324 ~~~~~~~~~~~-~-v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~-~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      .+.+.+-+..+ . -.-...++|.+.||||++.++|+.|..+|++|..-.-.|.. .|.   -.--|...-.-+-|.+
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s---~~~lfha~it~~lPa~  149 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGS---SAPLFHAQITARLPAN  149 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCC---CccceehhhhccCCCc
Confidence            22222222211 1 11123789999999999999999999999999988888731 122   2234666444455655

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.67  E-value=2.1e-07  Score=72.04  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=54.3

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      ++.|++.| +||||+++.++++|+++||||.+.+..+ .++.+.-++.|..+      +...+++++.|++....
T Consensus         2 ~~vItv~G-~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~~   68 (76)
T PF13740_consen    2 QLVITVVG-PDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAEE   68 (76)
T ss_dssp             EEEEEEEE-E--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEe-cCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHHH
Confidence            57899999 9999999999999999999999999999 77777777888763      55778888888876543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.43  E-value=1.2e-06  Score=67.89  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      +.|++.| +||||+.++|+++|+++||||.+.+.++ .++...-.+.+..+      ....+.+++.|+...
T Consensus         2 ~iltv~g-~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~~~   65 (77)
T cd04893           2 LVISALG-TDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPGLA   65 (77)
T ss_pred             EEEEEEe-CCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHHHH
Confidence            6889999 9999999999999999999999999999 67766555555532      123567777777644

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.39  E-value=3.3e-06  Score=62.63  Aligned_cols=63  Identities=27%  Similarity=0.484  Sum_probs=48.1

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      +.|.+.+ +||||+|++++.+|+++|+||..+.+.+..+ ...+.++.+.+       ....+++.+.|+++
T Consensus         1 ~~v~v~~-~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIV-PDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEE-ETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHHH
T ss_pred             CEEEEEc-CCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHcc
Confidence            5788999 9999999999999999999999999999655 24444444433       34556666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.36  E-value=2.9e-06  Score=63.00  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRME  318 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~  318 (414)
                      |.|.|.++||||+|++++.+|+++|+||.++...+...+  ....|....     .+....+++.++|++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG--VGIVFIVIV-----VDEEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST--TEEEEEEEE-----EEGHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC--ceEEEEEEE-----CCCCCHHHHHHHHHcc
Confidence            568999999999999999999999999999999865332  223333221     1234556677777654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.25  E-value=1.1e-05  Score=62.39  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      +.+|++.++||||+++.++++|+++|+||.+.+..  +.++...-++.++..      ++..++|++.|.+.-
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999998887  566677777777621      346678888887654

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.21  E-value=4.6e-06  Score=64.27  Aligned_cols=65  Identities=23%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      +|++.| +||||+.++++++|+++||||.+.+..+ .+++..-.+.+.-+.+     ...+.+++.|+....
T Consensus         1 ~vtv~G-~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDS-----ADSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEc-CCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCC-----CCHHHHHHHHHHHHH
Confidence            378999 9999999999999999999999999888 5666666777775422     235667777777654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.14  E-value=8.6e-06  Score=59.00  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ++|+|.| ||+.||=.++++++.+.|++|..+.+.| .+....-+|+|.....  .-+-+|+.++++|.++.
T Consensus         1 tvitvnC-PDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~--~~~~rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINC-PDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPP--SIKVRWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeC-CCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCC--CCcccHHHHHHHHHhcC
Confidence            4789999 9999999999999999999999999999 6667888899987432  23568999999888753

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.10  E-value=1.3e-05  Score=61.82  Aligned_cols=52  Identities=25%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL  396 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~  396 (414)
                      .+.|.|+||||++++||++|+++|+||...+-.+  .++.  -.-.|.+.-+.+..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~--~~~~--f~~~~~v~~p~~~~   52 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV--IHGR--LSLGILVQIPDSAD   52 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE--EcCe--eEEEEEEEcCCCCC
Confidence            3789999999999999999999999999999888  7777  55577787665533

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.97  E-value=0.00063  Score=55.98  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCccccccccc
Q 015010           22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLEN  101 (414)
Q Consensus        22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  101 (414)
                      .|-+-.-||||-|..++..|..+|.+|+.-.|.--|. |=..-.|.    .+.+.-++-|.++.           +... 
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d-FGIiRmvV----~~~d~A~~~Lee~g-----------F~Vr-   67 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD-FGIIRMVV----DRPDEAHSVLEEAG-----------FTVR-   67 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC-cceEEEEc----CChHHHHHHHHHCC-----------cEEE-
Confidence            4667788999999999999999999999887763222 21222233    23334444444321           1111 


Q ss_pred             ccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          102 QQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       102 ~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                             -.-++-|-. +|+||=|++|+.+|.++++|+-.+..+++...+++-+|.+.+
T Consensus        68 -------~~dVlaVEm-eD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          68 -------ETDVLAVEM-EDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             -------eeeEEEEEe-cCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence                   135777888 999999999999999999999999999988888887776644

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.97  E-value=2.1e-05  Score=62.55  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=51.6

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      ..|++.| +||||++++|+++|+++||||.+.+..+ .++...-.+.+..+.    .....+.+++.|+....
T Consensus         2 ~vl~i~g-~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~----~~~~~~~L~~~l~~l~~   68 (88)
T cd04872           2 AVITVVG-KDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE----SNLDFAELQEELEELGK   68 (88)
T ss_pred             EEEEEEc-CCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence            5789999 9999999999999999999999999999 666655556666432    01234667777777554

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.91  E-value=3.5e-05  Score=61.39  Aligned_cols=67  Identities=21%  Similarity=0.321  Sum_probs=50.1

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      .+.|++.| +||||++++++++|+++|+||.+.+..+ .++...-.+.+.-+..    +...+.+++.|....
T Consensus         3 ~~~ltv~g-~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~~----~~~~~~l~~~l~~l~   69 (90)
T PRK00194          3 KAIITVIG-KDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISES----KKDFAELKEELEELG   69 (90)
T ss_pred             eEEEEEEc-CCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecCC----CCCHHHHHHHHHHHH
Confidence            57899999 9999999999999999999999999998 6776655555543310    112355666666644

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.90  E-value=6.2e-05  Score=57.66  Aligned_cols=67  Identities=22%  Similarity=0.242  Sum_probs=46.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCC-eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDG-RVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      .|++.| +||||++++|+++|+++|+||.+.+.++..++ ...-.+.+..+.    .+...+.+++.|+....
T Consensus         1 ii~v~g-~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~~l~~~l~~l~~   68 (74)
T cd04875           1 ILTLSC-PDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG----FDLSREALEAAFAPVAA   68 (74)
T ss_pred             CEEEEc-CCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence            378999 99999999999999999999999999973333 222223332211    01135677777776543

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.90  E-value=0.0016  Score=53.69  Aligned_cols=112  Identities=13%  Similarity=0.214  Sum_probs=79.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccccccc
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEI  191 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~  191 (414)
                      +|.++. .++||=|+.++..|.++|+||+.-.|.- .+.+-+--+.|..       ++.   -    .++|..       
T Consensus         5 QISvFl-ENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~-------~d~---A----~~~Lee-------   61 (142)
T COG4747           5 QISVFL-ENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDR-------PDE---A----HSVLEE-------   61 (142)
T ss_pred             EEEEEe-cCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCC-------hHH---H----HHHHHH-------
Confidence            688999 9999999999999999999999777765 3444444454533       111   1    112211       


Q ss_pred             cCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhC
Q 015010          192 ELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDY  271 (414)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~  271 (414)
                                             ..+                  .|.+.       .++-|...|+||=|+.|+.+|.++
T Consensus        62 -----------------------~gF------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~   93 (142)
T COG4747          62 -----------------------AGF------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDA   93 (142)
T ss_pred             -----------------------CCc------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhc
Confidence                                   110                  12121       278888999999999999999999


Q ss_pred             CceEEeEEEEEeeCCCEEEEEEEE
Q 015010          272 NTQVSYGRFFAKPRGNCEVDLFIM  295 (414)
Q Consensus       272 ~l~I~~A~I~t~t~g~~~~D~F~v  295 (414)
                      ++|+.+...+++ ....+.=+|.+
T Consensus        94 diNldYiYAFv~-ek~KAlli~r~  116 (142)
T COG4747          94 DINLDYIYAFVT-EKQKALLIVRV  116 (142)
T ss_pred             CcCceeeeeeee-cCceEEEEEEh
Confidence            999999888865 44567665554

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.85  E-value=9.9e-05  Score=57.17  Aligned_cols=65  Identities=22%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCC
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCP   86 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~   86 (414)
                      .++++.||||||+.+.++++|+++|.+|.+...+..+++|+-...+... ..+...|+..++.++.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-~~~~~~l~~~l~~~~~   66 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-WDAIAKLEAALPGLAR   66 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-cccHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999888888777777644 2345667777776553

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.84  E-value=8.6e-05  Score=57.71  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-----CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-----GRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-----g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      .|++.| +||||++++|+++|+++|+||.+.+..+...     +...-.+.+..+.     ....+++++.|+....
T Consensus         1 ~l~v~g-~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~l~~   71 (81)
T cd04869           1 VVEVVG-NDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEELCD   71 (81)
T ss_pred             CEEEEe-CCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHHHHH
Confidence            378999 9999999999999999999999999998541     3444345554432     1134667777776543

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.73  E-value=0.00018  Score=55.91  Aligned_cols=63  Identities=11%  Similarity=0.191  Sum_probs=46.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL  315 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L  315 (414)
                      +.+.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.-.|.+.     +.+.+.++.+.+.|
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L   69 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            5799999999999999999999999999998887532244666666665     33456667776665

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.70  E-value=0.00025  Score=55.06  Aligned_cols=64  Identities=25%  Similarity=0.365  Sum_probs=46.9

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .+.|.|.+ .||||+|++|+.++++.|+||.+.++.+.. ++.+.-.|.+.-     .+.+.++.+.+.|+
T Consensus         6 ~~~l~i~~-~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEA-EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEE-E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHHC
T ss_pred             EEEEEEEE-EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHHH
Confidence            46899999 999999999999999999999999999964 677666666654     24555555544443

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.68  E-value=0.00027  Score=54.84  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecC------CEEEEEEEEEcCCCCCHHHHHHHHHHhCCC
Q 015010           22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDG------KWCYLVFWVVGKPTTRWSLLKNRLLEVCPS   87 (414)
Q Consensus        22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg------~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~   87 (414)
                      +|++.|+|++|+.++++++|+++|++|.+....+++      +.+.-.+.+..+.+.+...|+..+..+|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~   72 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDD   72 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999998866      677777777766556677788888776654

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.62  E-value=0.00022  Score=56.76  Aligned_cols=68  Identities=18%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCC-CCCHHHHHHHHHHhCCC
Q 015010           20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKP-TTRWSLLKNRLLEVCPS   87 (414)
Q Consensus        20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~-g~~~~~l~~~l~~~~~~   87 (414)
                      ...+++.|+|+||++++++++|+++|++|....-.+.++.++-.+.+..+. +.+.+.|+..|+.++..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~   71 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKE   71 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999988877888888866666544 34566788777776543

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.58  E-value=0.00071  Score=51.46  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      |.+.+ .||||+|++|+.++++.|.||.+....+..++.+...|.+.-     .+.+.++.+.+.|++
T Consensus         2 l~v~~-~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-----~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLEL-PNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-----PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEe-CCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-----CCHHHHHHHHHHHhc
Confidence            67889 999999999999999999999998887755676655566653     245566666555554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.55  E-value=0.00054  Score=52.37  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe--cCCEEEEEEEEEcCCC-CCHHHHHHHHHHhCC
Q 015010           22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK--DGKWCYLVFWVVGKPT-TRWSLLKNRLLEVCP   86 (414)
Q Consensus        22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t--dg~~~~d~f~v~~~~g-~~~~~l~~~l~~~~~   86 (414)
                      .|++.||||+|+..+++++|+++|.+|.+..-.+  .++-+.-.+.+..+.+ .+...|+..|+++|.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~   68 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA   68 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999998875  4455555555555544 567788888887764

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.53  E-value=0.00033  Score=55.59  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCC-CCCHHHHHHHHHHhCCC
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKP-TTRWSLLKNRLLEVCPS   87 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~-g~~~~~l~~~l~~~~~~   87 (414)
                      ..|++.|||+||+.+++.++|+++|.+|.+..-.+.++-|.-.+.+.-+. +.+...|+..|..++..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~   69 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKE   69 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999888777777777777554 45667788888776644

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.46  E-value=0.0014  Score=49.73  Aligned_cols=61  Identities=5%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      +.|.+.||||+|++|+.++++.|.||.+....+. ..+.+.-.|.+.     +.+.+.++.+.+.|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence            6789999999999999999999999998776543 334555556664     334556667766664

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.41  E-value=0.00022  Score=53.83  Aligned_cols=70  Identities=11%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE--ecCCCCCCChHHHHHHHHHHHHHH
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM--QADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v--~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      |+++++-||-.|||++-+|+.+++-|++|.|.....+++..++|.+  ...++.+.......++.+.+.+.+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999865567788888755  333333554555667777766655

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.27  E-value=0.001  Score=64.68  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE--eCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS--TTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~--T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      .+.|++.| +||||+.+.|+++|+++|+||.+.+.+  +..+.+++ .+.+.+...   .....+++++.|.++..
T Consensus         9 ~~iitv~G-~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~---~~~~~~~l~~~l~~l~~   79 (289)
T PRK13010          9 SYVLTLAC-PSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSA---EAASVDTFRQEFQPVAE   79 (289)
T ss_pred             CEEEEEEC-CCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCC---CCCCHHHHHHHHHHHHH
Confidence            57899999 999999999999999999999999997  43444443 222332110   11134667777776544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.25  E-value=0.00037  Score=54.81  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=52.4

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      ...|+|.+ .||||+.+.++++|+++|.||++-...- .+|+.--.+.|.-+.    .......+++.|......
T Consensus         3 ~avITV~G-kDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~~   71 (90)
T COG3830           3 RAVITVIG-KDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISK----EVVDFAALRDELAAEGKK   71 (90)
T ss_pred             eEEEEEEc-CCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCCh----HhccHHHHHHHHHHHHHh
Confidence            46899999 9999999999999999999999988766 677755556665421    233456677777776643

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.19  E-value=0.01  Score=57.71  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=32.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      +.+|+|.|+||||+.+.|+..|+++|+||.+.+-+
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            46899999999999999999999999999986654

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.18  E-value=0.0019  Score=62.55  Aligned_cols=64  Identities=19%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      .|++.| +||||+.+.|+++|+++|+||.+.+.++.. +++..-.+.+..+..    ....+.+++.|..
T Consensus         2 ~itv~g-~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~----~~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSC-PDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF----RLEESSLLAAFKS   66 (280)
T ss_pred             EEEEEC-CCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence            589999 999999999999999999999999999842 355544555553311    1235677777777

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.18  E-value=0.013  Score=56.83  Aligned_cols=108  Identities=10%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee--
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVA--  326 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~--  326 (414)
                      +++|.|+||||+.+.|++.|+++|+||.+.+-+....++...=.+.++..+...    ..+.|++.|.+++..+..+.  
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence            589999999999999999999999999997665332233333333334222111    24567777766344333221  


Q ss_pred             eecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCce
Q 015010          327 VVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSIS  366 (414)
Q Consensus       327 ~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~  366 (414)
                      +.....+.      .|=|....+---|.+|-.+.+.-.++
T Consensus        78 l~~~~~~~------ki~vl~Sg~g~nl~~l~~~~~~g~l~  111 (280)
T TIGR00655        78 LILADKLK------RVAILVSKEDHCLGDLLWRWYSGELD  111 (280)
T ss_pred             EecCCCCc------EEEEEEcCCChhHHHHHHHHHcCCCC
Confidence            11111111      34444444455566666666655554

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK07431 aspartate kinase; Provisional

Probab=97.12  E-value=0.54  Score=50.49  Aligned_cols=264  Identities=16%  Similarity=0.164  Sum_probs=141.9

Q ss_pred             eCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCCC-HHHHHHHHHHhCCCCCcCCccccccccccc
Q 015010           26 NCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTTR-WSLLKNRLLEVCPSYFSTSRIYSYRLENQQ  103 (414)
Q Consensus        26 ~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  103 (414)
                      ..++++|.+.++-..|+++|.+|---.-+ +.++-.-..|.+...+-.. .+.|+....++...            .+  
T Consensus       277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~------------~i--  342 (587)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGA------------EV--  342 (587)
T ss_pred             cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCC------------cE--
Confidence            45788999999999999999998755432 1222223346663321111 11222211111110            00  


Q ss_pred             CCCCCCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          104 QPKPPDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       104 ~~~~~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                       .-..+...|.+.+ .   +.+|+++++..+|++.|+||..-.  +  .+..+ .|.|.        ++..++..+.|.+
T Consensus       343 -~~~~~~a~IsvvG-~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~I-s~vv~--------~~d~~~av~~Lh~  407 (587)
T PRK07431        343 -LVETNVAKLSISG-AGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKV-SCVID--------AEDGDKALRAVCE  407 (587)
T ss_pred             -EEeCCeEEEEEEC-CCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEE-EEEEc--------HHHHHHHHHHHHH
Confidence             0112567888888 5   789999999999999999997433  3  33333 24443        2334555566666


Q ss_pred             HHccccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCC--eEEEEecCCCCCeEEEEEE-ecCc
Q 015010          181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP--VSIAVDNSFSPSHTLIQIL-GQDH  257 (414)
Q Consensus       181 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~V~v~~~~~~~~t~v~V~-~~Dr  257 (414)
                      .+.....       ..+.              ...+.            ....+  +.|..    ..+...|++. ..+.
T Consensus       408 ~f~~~~~-------~~~~--------------~~~~~------------~~~~~~v~gIa~----~~~~~~i~l~~~~~~  450 (587)
T PRK07431        408 AFELEDS-------QIEI--------------NPTAS------------GQDEPEVRGVAL----DRNQAQLAIRNVPDR  450 (587)
T ss_pred             HhccCCc-------cccc--------------Ccccc------------CCCCCcEEEEEc----cCCEEEEEECCCCCC
Confidence            6643110       0000              00000            00111  12222    2234455543 4678


Q ss_pred             ccHHHHHHHHHHhCCceEEeEEEEEee-CCC--EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCc
Q 015010          258 KGLIYDMMRTLKDYNTQVSYGRFFAKP-RGN--CEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDA  334 (414)
Q Consensus       258 pGLL~~i~~~L~~~~l~I~~A~I~t~t-~g~--~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~  334 (414)
                      ||+++++...|+++|++|..  +.++. .++  ...=.|.++.     .+..++..+.+.|.+.+.. ..+.. ..+   
T Consensus       451 ~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~-----~~~~~~~~~l~~l~~~~~~-~~i~~-~~~---  518 (587)
T PRK07431        451 PGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPK-----EDREAAQKVLRELAKQLPG-AEVED-GPA---  518 (587)
T ss_pred             ccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcH-----HHHHHHHHHHHHHHHhcCC-ceEEE-eCC---
Confidence            99999999999999999996  54311 111  1222345431     1111223333333322211 00100 111   


Q ss_pred             eeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          335 ELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       335 ~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                          -..|.+.|.   .+||++.++..+|.+.|++|...-
T Consensus       519 ----va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        519 ----IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             ----eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence                126777776   789999999999999999996543

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.11  E-value=0.0053  Score=45.69  Aligned_cols=62  Identities=24%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC----CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP----DGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      +.|.+ +|+||+|++|+.+++++|+||.+.......    .+...-.|.+...     +.+.++.+.+.|++
T Consensus         1 ~~v~~-~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVEL-PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEe-CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            35788 999999999999999999999988776532    3554444555431     34455555555543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.09  E-value=0.0026  Score=61.84  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      ..+.|++.| +||||+.++|+++|+++||||.+.+.++. .+|...-.+.+.-.    +.+...+.|++.|++....
T Consensus         5 ~~~vitv~G-~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~----~~~~~~~~L~~~L~~l~~~   76 (286)
T PRK06027          5 QRYVLTLSC-PDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD----GLIFNLETLRADFAALAEE   76 (286)
T ss_pred             ceEEEEEEC-CCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHHHHHH
Confidence            468999999 99999999999999999999999999882 22333333444321    1122367777777765543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.06  E-value=0.024  Score=55.06  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=31.6

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      ..+|+|.|+||||+.++++++|+++|+||.+..-.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~   41 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF   41 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence            45799999999999999999999999999985554

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.06  E-value=0.0025  Score=45.74  Aligned_cols=47  Identities=26%  Similarity=0.433  Sum_probs=40.2

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      |.+.. +|+||.+++++..|.++|+||.+..++...++..+-.|.+.+
T Consensus         1 ~~v~~-~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFV-ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEe-CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35678 999999999999999999999999998855577777777764

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.05  E-value=0.0039  Score=48.75  Aligned_cols=66  Identities=8%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      .+.+...|+||+|++|++.|+..|+||.+-.+..+...+..-=++.+.     ..++...+++.+.|.+.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-----~~d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-----IQDDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-----CCCHHHHHHHHHHHhCCc
Confidence            588999999999999999999999999986655322221222222222     124566777877776544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.00  E-value=0.0011  Score=52.19  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      ..+|+|.++||||+.+.++++|+++|+||.+  |+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--is   35 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--IS   35 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HH
Confidence            3589999999999999999999999999996  65

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.0033  Score=59.21  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..+.+++.| +|++|+.+.|++.|+++||||.++..++-. .|++.--.......    .+...+.+++.+..+.
T Consensus         6 ~~~~LtvsC-pd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~----~~~~~~~l~~~f~~~a   75 (287)
T COG0788           6 DTFILTVSC-PDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEG----GPLDREALRAAFAPLA   75 (287)
T ss_pred             cceEEEEec-CCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCC----CcccHHHHHHHHHHHH
Confidence            468999999 999999999999999999999999999743 34332222222211    2234566777776633

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.97  E-value=0.0054  Score=49.24  Aligned_cols=65  Identities=9%  Similarity=0.208  Sum_probs=43.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.+...|+||+|++|++.|+..|+||.+-.+..+..++ .--+.++-.      ++...+++.+.|.+.+
T Consensus         9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~-iSRmtivv~------~~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGD-KSRIWLLVN------DDQRLEQMISQIEKLE   73 (96)
T ss_pred             EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCC-ceEEEEEEc------CchHHHHHHHHHhCCc
Confidence            4599999999999999999999999999985554222221 111222221      1346777777776544

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.94  E-value=0.0082  Score=44.67  Aligned_cols=63  Identities=6%  Similarity=0.024  Sum_probs=40.4

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEee---CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKP---RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t---~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      +.|..+|+||+|++|+.+|+++|+||.+.......   ..+...-.|.+..     .+.+.++.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999975544211   1223333333431     234455666666543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.92  E-value=0.0045  Score=60.14  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      .+.|+|.| +||||+.++|+++|+++|+||.+.+.++. .++.+.-.+.+..+.+     ...+.|++.|++....
T Consensus         7 ~~vitv~G-~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~l~~~   76 (286)
T PRK13011          7 TFVLTLSC-PSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAPIAAR   76 (286)
T ss_pred             eEEEEEEe-CCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHHHHHH
Confidence            57899999 99999999999999999999999999853 3343333444443221     1256777777776543

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.92  E-value=0.0063  Score=46.88  Aligned_cols=65  Identities=6%  Similarity=0.044  Sum_probs=43.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      .+.+...|+||+|.++++.|+..|+||.+-.+..+...+..-=++.+.  |    ++...++|.+.|.+.+
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~----~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C----TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999985554211121111122222  2    3466777877776544

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.91  E-value=0.0083  Score=45.60  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHH-HHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRK-RREETIHHLEA  180 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~-~~~~i~~~L~~  180 (414)
                      .|.+.+ .||||++++|+.+|+++|.||......+..++.+--.|.+...     +.+ .++++.+.|++
T Consensus         2 ~l~i~~-~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLL-EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEe-cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence            578899 9999999999999999999999987765345654445666532     232 44555444443

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.87  E-value=0.0067  Score=46.32  Aligned_cols=57  Identities=16%  Similarity=0.237  Sum_probs=40.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL  315 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L  315 (414)
                      .+.|.+.||+|+|++|+.++++.|+||.+..+.  +.+ .  -.|.+.     +.+.+.++.+.++|
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~--i~l~i~-----v~~~~~L~~li~~L   58 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R--IYLNFP-----TIEFEKLQTLMPEI   58 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e--EEEEeE-----ecCHHHHHHHHHHH
Confidence            378999999999999999999999999987775  333 3  223333     22445566666655

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.87  E-value=0.0073  Score=46.11  Aligned_cols=34  Identities=24%  Similarity=0.603  Sum_probs=32.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST  146 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T  146 (414)
                      .|.|.+ .||+|+|++|+.++++.|.||.+..+.+
T Consensus         2 ~l~I~~-~dr~Gll~dI~~~i~~~~~nI~~~~~~~   35 (74)
T cd04877           2 RLEITC-EDRLGITQEVLDLLVEHNIDLRGIEIDP   35 (74)
T ss_pred             EEEEEE-EccchHHHHHHHHHHHCCCceEEEEEec
Confidence            478999 9999999999999999999999999987

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.83  E-value=0.048  Score=53.03  Aligned_cols=66  Identities=14%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe--cCCCCCCChHHHHHHHHHHHH
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ--ADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~--~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      .+.+|+|.|+||||+.++|+++|+++|+||.+.+..+...++    .|.+.  .+..+.  +...+.|++.|++
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~--~~~~~~L~~~L~~   72 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGL--IFNLETLRADFAA   72 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCC--CCCHHHHHHHHHH
Confidence            357899999999999999999999999999997776421443    35442  222111  1225667777654

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.78  E-value=0.012  Score=52.02  Aligned_cols=65  Identities=15%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..|++.. .|+||.|++|+++|+..|+||.+-.+..+. .+..--+|.|..      ++...++|...|++..
T Consensus         2 ~~isI~v-en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLV-ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEE-cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            3588899 999999999999999999999999888765 455555566654      3556677777777654

acetohydroxyacid synthase is a synonym.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.77  E-value=0.011  Score=47.45  Aligned_cols=68  Identities=15%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      +.+...|.+.. .|+||+|++|++.|+..|.||.+-.+.-+.+.. .--++.+.       +++.+++|...|++..
T Consensus         5 ~~~~~tisvlv-~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-------~~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          5 THDNVILELTV-RNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-------DDQRLEQMISQIEKLE   73 (96)
T ss_pred             CCCCEEEEEEE-ECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-------CchHHHHHHHHHhCCc
Confidence            34556799999 999999999999999999999998776545443 22223332       2346677777776654

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.75  E-value=0.013  Score=51.89  Aligned_cols=65  Identities=15%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..|++.. .|+||.|++|++.|+.+|+||.+-.+..+. .+..--+|.|..      ++...+++...|++..
T Consensus         3 ~~IsV~v-eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLV-ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEE-cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            4688899 999999999999999999999998887655 465555566654      4556777877777655

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.71  E-value=0.016  Score=43.27  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=37.3

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCC-eEEEEEEEe
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDG-RVMDLFFIT  159 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~  159 (414)
                      ..+.+.. +|+||.|++++..|+++|+||.+.......++ ...-.+.+.
T Consensus         2 ~~~~v~~-~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDV-PDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEc-CCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4678899 99999999999999999999998887774322 333345554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.66  E-value=0.017  Score=44.50  Aligned_cols=64  Identities=8%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      ..|.+.. .|+||.|++++++|+..|+||.+-.+.-+.+....- ++.+..      ++...++|...|++.
T Consensus         3 ~tisi~v-~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVI-HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEE-ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhCC
Confidence            4688999 999999999999999999999998887434433322 233332      455667776666654

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.62  E-value=0.017  Score=42.96  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=33.8

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD  149 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~  149 (414)
                      ..+.|.. +|+||.|++++.+|+++|+||.+..++...+
T Consensus         2 ~ri~v~v-~d~pG~La~v~~~l~~~~inI~~i~~~~~~~   39 (66)
T cd04908           2 KQLSVFL-ENKPGRLAAVTEILSEAGINIRALSIADTSE   39 (66)
T ss_pred             EEEEEEE-cCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            4678899 9999999999999999999999999887433

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.62  E-value=0.033  Score=47.90  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010          243 FSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ  296 (414)
Q Consensus       243 ~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~  296 (414)
                      .....+.+.|.+.|+||+|++++.+|++++++|.+....+...++.+.-.|.+.
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            445578899999999999999999999999999986665432244444455554

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.62  E-value=0.012  Score=43.40  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeC--ceeeEEEEEEE
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIH--DREWEVYRILL  389 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g--~~~~~~d~Fyv  389 (414)
                      +.+...|+||+|.+|+.+|++.|++|.+..+..  .+  +.  ..-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~~~--~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR--KEKGGI--AYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec--cCCCCE--EEEEEEc
Confidence            678899999999999999999999999999877  44  44  5556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.59  E-value=0.019  Score=43.36  Aligned_cols=62  Identities=16%  Similarity=0.298  Sum_probs=42.3

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .|.+.+ .|++|++++++.+|+++|+||......+..+ +.+.-.+.+..     .+...++++.+.|+
T Consensus         2 yl~i~~-~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTV-KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEe-CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHH
Confidence            478889 9999999999999999999999988765334 44433333322     24444444444444

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.58  E-value=0.017  Score=51.80  Aligned_cols=66  Identities=11%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      .+.|.+.|+||+|+++++.|+.+|+||.+-.+..+...+...-++.+.  +    ++...++|.+.|.+.+.
T Consensus         4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHhH
Confidence            689999999999999999999999999986554322332332222332  1    12336788888877664

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.57  E-value=0.019  Score=43.52  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChH-HHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPS-KQDALCSRLR  316 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~-~~~~l~~~L~  316 (414)
                      .+.|.+.|+||++++|+.+|+++|+||......+ ..++.+.=.|.+..     .+.+ .++.+.+.|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v-----~~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDT-----STMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEc-----CchHHHHHHHHHHHh
Confidence            4789999999999999999999999999754431 12334444565542     2233 5566666653

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.55  E-value=0.016  Score=45.35  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeE-EEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRV-MDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~-~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..|.+.. .|+||.|++|++.|+..|+||.+-.+..+.+..+ =-++.+..     .++...++|.+.|++..
T Consensus         3 ~~isvlV-eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~-----~d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQV-ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI-----QDDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEE-ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC-----CCHHHHHHHHHHHhCCc
Confidence            3588999 9999999999999999999999988877655433 22344431     14556677777776644

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.52  E-value=0.027  Score=41.68  Aligned_cols=61  Identities=15%  Similarity=0.279  Sum_probs=43.9

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .|.+.+ .|+||++++++.+|+++|.||.+....+. .++.+.-.|.+..     .+ ...+.+.+.|+
T Consensus         2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLV-ENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEE-cCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence            367788 99999999999999999999999998774 3455544454543     13 44555555544

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.48  E-value=0.021  Score=43.08  Aligned_cols=63  Identities=8%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      .+.|.+.|+||++.+++..|+++|++|..........++.+.=.|.+.     ..+.+..+.+.+.|+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~-----~~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH-----ETSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc-----cCCHHHHHHHHHHHH
Confidence            478889999999999999999999999986654221223333233332     223455566666654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.48  E-value=0.024  Score=50.08  Aligned_cols=66  Identities=8%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      .+.|...|+||.|++|++.|+.+|+||.+-.+..+...+...=+|.++  +    ++...++|.+.|.+.+.
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~----d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G----DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcCcc
Confidence            588999999999999999999999999986665321122333334443  2    34567788888776554

acetohydroxyacid synthase is a synonym.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.44  E-value=0.025  Score=42.00  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      +|.+.+ +|++|.|++++..|+++++||.+....+..++...-.|.+.+
T Consensus         2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~   49 (72)
T cd04874           2 ALSIIA-EDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG   49 (72)
T ss_pred             eEEEEe-CCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence            578899 999999999999999999999988887633455443454543

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.43  E-value=0.011  Score=42.33  Aligned_cols=47  Identities=15%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEc
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDE  391 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d  391 (414)
                      +.+...|+||.|.+|+.+|.+.|+||.+..+... .+++  +.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~-~~~~--~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAET-RGEF--GILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEc-cCCc--EEEEEEECC
Confidence            3578899999999999999999999999998873 2366  666665543

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.42  E-value=0.028  Score=49.80  Aligned_cols=66  Identities=8%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      .+.|...|+||.|++|++.|+.+|+||.+-.+..+...+...=+|.++  |    ++...+++.+.|.+.+.
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~----~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G----DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcccc
Confidence            588999999999999999999999999986655321122333334443  2    35667888888876554

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.41  E-value=0.024  Score=43.73  Aligned_cols=63  Identities=11%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEE-EEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDL-FFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      ..|.+.. .|+||.|++++++|+..|+||.+-.+.-+.++...-+ +.| +      ++...+.|.+.|.+.
T Consensus         4 ~~lsi~v-~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKA-RFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEE-ECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhcC
Confidence            5689999 9999999999999999999999999877666543333 444 3      233456676666654

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.37  E-value=0.019  Score=54.23  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      ..+++++.|+|+||+.+.|++.|+.+|+||.++.=+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf   41 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF   41 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc
Confidence            457899999999999999999999999999998776

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.32  E-value=0.041  Score=40.61  Aligned_cols=61  Identities=7%  Similarity=0.096  Sum_probs=40.8

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      +.+.+.|+||+|.+++.+|++++++|.+....+...++.+.=.|.+..     .+ +..+.+.+.|+
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence            678899999999999999999999999866552112333333334431     22 44556655554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.29  E-value=0.029  Score=43.27  Aligned_cols=65  Identities=12%  Similarity=0.072  Sum_probs=46.0

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.+...++||.|.++++.|...|+||.+-.+..+.+++...=++.+.       ++...++|.+.|.+.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhcCc
Confidence            3589999999999999999999999999986665332443333333442       2345677877776544

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.28  E-value=0.048  Score=42.16  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG-NCEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g-~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      +.+.+..+|+||.|+++...|+++|+||.+-  .+.... ....=.|+++-++. .. .+..+.+.+.|+.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i--~s~p~~~~~~~~~f~vd~~~~-~~-~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKI--ESRPSKGGLWEYVFFIDFEGH-IE-DPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEE--EEEEcCCCCceEEEEEEEECC-CC-CHHHHHHHHHHHH
Confidence            3467778999999999999999999999974  433332 23334567764444 22 3444555555554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.27  E-value=0.049  Score=40.59  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      ..+.+..+|+||.|++++..|+++|+||.+....
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~   35 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL   35 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence            3588899999999999999999999999976655

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.27  E-value=0.034  Score=49.90  Aligned_cols=66  Identities=12%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      ..|.+.+ .|+||++++|+++|+..|+||.+-.+..+.+.. .--.+.+..      ++...++|.++|++...
T Consensus         3 ~~isvlv-~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLV-EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEE-eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHhH
Confidence            4689999 999999999999999999999998887644433 222233322      23346788888877664

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.20  E-value=0.061  Score=41.59  Aligned_cols=67  Identities=19%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      +.+.+.. +|+||.|+++..+|+++|+||.+-......++...-.|+|.-...  .+.+....+-+.|+.
T Consensus         2 ~sl~~~~-~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTL-PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEE-CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence            4577788 999999999999999999999988776654544445677764321  233344444444444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.19  E-value=0.047  Score=43.56  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      ....|.+.+..+|+||-|+++...|+.+|+|+.+  |.+...... -.=.|+|+-+|.  .+ ...+.+.+.|.+.|.
T Consensus        11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence            3444677777799999999999999999999995  876543322 334577875564  23 445555566666553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.15  E-value=0.023  Score=41.84  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=38.6

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEe
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFIT  159 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~  159 (414)
                      +.+.+ .|++|++++++.+|+++|+||.+..+.... ++...-.|.+.
T Consensus         2 l~v~~-~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVH-KDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEe-cCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            57789 999999999999999999999999988743 36666667663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.14  E-value=0.022  Score=42.39  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=33.6

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR  380 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~  380 (414)
                      .+.|...|+||.|++|+.+|.+.|+||.+.-+..  .+++
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~--~~~~   40 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIAD--TSEF   40 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe--cCCC
Confidence            5788899999999999999999999999988876  5554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.09  E-value=0.033  Score=41.75  Aligned_cols=47  Identities=23%  Similarity=0.434  Sum_probs=37.9

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEec
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITD  160 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~  160 (414)
                      +.+.. +|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus         2 l~v~~-~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRN-TDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEe-CCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            45678 99999999999999999999998877654 3566666676654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=96.08  E-value=0.064  Score=46.89  Aligned_cols=53  Identities=25%  Similarity=0.283  Sum_probs=43.4

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      ....+.|.+.. .|+||+|++|+.+|+++|+||..-...+..+|.+--.|.+..
T Consensus        66 ~~r~vtL~i~l-~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         66 KGKIITLSLLL-EDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             CCcEEEEEEEE-ecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            44588999999 999999999999999999999998876645676555566654

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.06  E-value=0.056  Score=39.84  Aligned_cols=47  Identities=23%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEec
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITD  160 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~  160 (414)
                      |.+.+ .|+||.+++++..|+++|+||.+...... .++...-.+.+.+
T Consensus         2 l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~   49 (71)
T cd04903           2 LIVVH-KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ   49 (71)
T ss_pred             EEEEe-CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence            56788 99999999999999999999999887763 2455443454443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.04  E-value=0.047  Score=41.24  Aligned_cols=46  Identities=26%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC--CCCeEEEEEEEe
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT--PDGRVMDLFFIT  159 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~  159 (414)
                      +.+.. +|+||-|++++..|+++|.||.+......  ..+.-...+.+.
T Consensus         2 l~v~~-~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~   49 (72)
T cd04884           2 FTFLL-EDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVT   49 (72)
T ss_pred             EEEEe-cCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEE
Confidence            57788 99999999999999999999998876653  233333344444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.03  E-value=0.038  Score=40.36  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=35.3

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEE
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFI  158 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V  158 (414)
                      +.+.. +|+||-|++++.+|+++|+||.+...+... .+...-.|.+
T Consensus         2 i~v~~-~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEV-PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEe-CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67788 999999999999999999999988776633 2454434444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.03  E-value=0.044  Score=40.43  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      +.+...||||.|.+|+..|.++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            577899999999999999999999999887654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.00  E-value=0.077  Score=45.64  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=40.5

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEe
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFIT  159 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~  159 (414)
                      ..+.|.+.+ .|+||+|++|+.+|+++++||.+....+.. ++.+.-.|.+.
T Consensus        55 ~~~~I~V~~-~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         55 KLVEIELVV-EDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             cEEEEEEEE-cCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            488999999 999999999999999999999998887754 44444344443

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.97  E-value=0.036  Score=44.25  Aligned_cols=66  Identities=11%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCc--hHHHHHHHHHHc
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPR--NKIEDLVRKILM  411 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~--~~~~~~i~~~L~  411 (414)
                      .|-+...|+||-|+++-..|+++|+|+.+-...-  ...+.| .+.||| |.+|. .+.  .+.++.+++.|.
T Consensus        16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~~-~Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~   83 (90)
T cd04931          16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNKD-EYEFFI-NLDKK-SAPALDPIIKSLRNDIG   83 (90)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCCc-eEEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence            5556668999999999999999999999654433  544444 468988 44565 222  234566666554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.86  E-value=0.089  Score=37.76  Aligned_cols=46  Identities=30%  Similarity=0.416  Sum_probs=36.0

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEe
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT  159 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~  159 (414)
                      |.+.+ .|+||.+++++..|.+++++|....+....++...-.|.+.
T Consensus         1 l~v~~-~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEA-IDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEE-eccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            45778 99999999999999999999999988874335443344444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.80  E-value=0.098  Score=35.57  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=31.3

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP  148 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~  148 (414)
                      |.+.+ +|++|++++++.+|..+|++|.........
T Consensus         1 i~i~~-~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSG-PDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEe-cCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46788 999999999999999999999999987743

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.78  E-value=0.012  Score=43.81  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=39.6

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK  408 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~  408 (414)
                      +-+.+.||||+|.+|+.+|.+.|++|.+....+  .++.  +.-.|-+.   ...  .+..+++|++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~---~~~--l~~li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDID---SEV--SEELLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcC---CCC--CHHHHHHHHc
Confidence            346889999999999999999999998876655  4444  44344432   222  2235666664

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.74  E-value=0.045  Score=41.69  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             EEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCC
Q 015010          343 ELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADG  394 (414)
Q Consensus       343 ev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g  394 (414)
                      -+...|+||-|++|..+|+++|+||.+-...- ..+..  ....|||. -+|
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp-~~~~~--~~~~f~id-~~~   50 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRP-SRKGL--WEYEFFVD-FEG   50 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee-cCCCC--ceEEEEEE-EEC
Confidence            34557999999999999999999999763322 23334  56688884 445

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.72  E-value=0.045  Score=41.00  Aligned_cols=45  Identities=18%  Similarity=0.199  Sum_probs=34.0

Q ss_pred             EEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEE
Q 015010          343 ELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILL  389 (414)
Q Consensus       343 ev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv  389 (414)
                      -+...|+||.+++|+..|+++|++|.+........+++  +.-+|-+
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v   47 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSV   47 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEe
Confidence            46789999999999999999999998887755223445  4444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK07431 aspartate kinase; Provisional

Probab=95.58  E-value=2  Score=46.10  Aligned_cols=189  Identities=14%  Similarity=0.136  Sum_probs=106.6

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccccc
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCE  190 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~  190 (414)
                      ..+++..-.+++|++++|...|+++|+||.--.......+..--.|.|..        ...+...+.|++ +..      
T Consensus       271 a~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~------  335 (587)
T PRK07431        271 AKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAP------  335 (587)
T ss_pred             eEEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHH------
Confidence            34555443789999999999999999999865443322322222366643        122222222332 111      


Q ss_pred             ccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHHHHHHH
Q 015010          191 IELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIYDMMRT  267 (414)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~~i~~~  267 (414)
                            +.              ..                    ..+.+.    .+...|.|.+.   ++||+++++..+
T Consensus       336 ------~~--------------~~--------------------~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki~~a  371 (587)
T PRK07431        336 ------AL--------------GG--------------------AEVLVE----TNVAKLSISGAGMMGRPGIAAKMFDT  371 (587)
T ss_pred             ------Hc--------------CC--------------------CcEEEe----CCeEEEEEECCCcccCccHHHHHHHH
Confidence                  00              00                    012221    24567888875   789999999999


Q ss_pred             HHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc-eeeecC--CCC----ceeeee-
Q 015010          268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR-VAVVNR--GPD----AELLVA-  339 (414)
Q Consensus       268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~-~~~~~~--~~~----~~v~~~-  339 (414)
                      |++.+++|..  |.+  ..  ..=.|.+.        ++..++..+.|.+.+..... ..+.+.  +.+    +-|... 
T Consensus       372 L~~~~I~i~~--i~s--Se--~~Is~vv~--------~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~  437 (587)
T PRK07431        372 LAEAGINIRM--IST--SE--VKVSCVID--------AEDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDR  437 (587)
T ss_pred             HHHCCCcEEE--EEc--CC--CEEEEEEc--------HHHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccC
Confidence            9999999985  432  11  22234443        23345555666666643311 111111  000    111111 


Q ss_pred             --eeEEEE-eCCccchHHHHHHHHHhCCceEEEEEE
Q 015010          340 --NPVELS-GRGRPLVFYDITLALKILSISIFSVEI  372 (414)
Q Consensus       340 --~~lev~-~~DRpGLL~dIt~~l~~~gl~I~~A~I  372 (414)
                        ..|.|. ..++||++++|...|.++|++|..--.
T Consensus       438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~  473 (587)
T PRK07431        438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQ  473 (587)
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence              133333 457899999999999999999987643

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.58  E-value=0.056  Score=39.45  Aligned_cols=33  Identities=15%  Similarity=-0.017  Sum_probs=29.7

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      +.+.-.||||-|++++.+|.++|+||.+.....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~   34 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV   34 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence            567889999999999999999999998887655

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.52  E-value=0.13  Score=44.88  Aligned_cols=71  Identities=11%  Similarity=0.115  Sum_probs=48.3

Q ss_pred             EecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCCh-HHHHHHHHHH
Q 015010          239 VDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDP-SKQDALCSRL  315 (414)
Q Consensus       239 v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~-~~~~~l~~~L  315 (414)
                      |..........+.+...|+||+|++|..+|+++|+||..-.... ..++.+.=.|.+..     .+. ..++.|.+.|
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVev-----s~~~~~L~~Li~~L  132 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDT-----SSMEGDIDELLEKL  132 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEe-----CChHHHHHHHHHHH
Confidence            44445667788999999999999999999999999999643321 12334555566642     122 2456666655

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.51  E-value=0.05  Score=41.73  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL  396 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~  396 (414)
                      +-+..+|+||-|+++-..|+++|+|+.+-...-  .....| .+.||| |-+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~~-~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRSS-EFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCCc-eEEEEE-EEEcCH
Confidence            445558999999999999999999999554433  444444 568888 445654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.46  E-value=0.14  Score=38.89  Aligned_cols=64  Identities=9%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCC-EEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGN-CEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~-~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      +.+..+|+||-|+++...|+++|+||.+  |.+..... ...=.|+++-+|..  ++...+.+.+.|++
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence            3455689999999999999999999997  66543322 34445667644431  23455566566654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.45  E-value=0.13  Score=36.94  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=29.0

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      +.|.+.|+||.+.+++..|.+++++|.+..+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~   32 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR   32 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE
Confidence            35779999999999999999999999987776

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.42  E-value=0.17  Score=37.81  Aligned_cols=48  Identities=19%  Similarity=0.295  Sum_probs=37.4

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEe
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFIT  159 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~  159 (414)
                      +.+.+.. +|+||.+++++.+|+++|+||.+....-. .++...-.|.+.
T Consensus         2 ~~~~v~~-~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRV-PDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            4688899 99999999999999999999998765442 234555456654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.40  E-value=0.081  Score=39.91  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      +.+.-+|+||-|++++..|+++|.||.+-...
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~   33 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA   33 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence            56788999999999999999999999975443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.40  E-value=0.025  Score=42.03  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      +.+.+ .|+||++++++.+|++.|+||......+ .++.+.-.|.+..
T Consensus         2 ~~~~~-~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~   47 (69)
T cd04901           2 ILHIH-KNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDS   47 (69)
T ss_pred             EEEEe-cCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCC
Confidence            56788 9999999999999999999998876655 3466555555543

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.18  E-value=0.22  Score=37.24  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      +.+.+..+|+||.|.+++..|+++|+||.+....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            4688899999999999999999999999976544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.17  E-value=0.077  Score=51.37  Aligned_cols=55  Identities=13%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      +.|-+...|+||.|++|-.+|++.|||+.+  |..+..+.+.| .+.||| |.+|..-+
T Consensus       195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~-~Y~F~i-d~eg~~~d  249 (279)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFT-ATQFYA-DIEGHPED  249 (279)
T ss_pred             EEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCc-eEEEEE-EEECCCCC
Confidence            345555679999999999999999999985  54443665555 668998 66676443

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.15  E-value=0.075  Score=40.61  Aligned_cols=49  Identities=6%  Similarity=0.027  Sum_probs=35.9

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCC
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADG  394 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g  394 (414)
                      +-+...|+||-|++|-..|+++|+|+.+  |.+++...+.| .+.||| |-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~-~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGS-EYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCc-eEEEEE-EEEc
Confidence            3445588999999999999999999995  54433444443 468888 4455

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.10  E-value=0.13  Score=39.30  Aligned_cols=48  Identities=6%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCC
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADG  299 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g  299 (414)
                      +.+..+|+||-|+++...|+.+|+|+.+  |.+...... ..=.|+++-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence            4555689999999999999999999995  876543322 33456777555

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.08  E-value=0.16  Score=34.44  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010          342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      |.+.+.|+||++++|+.+|++.|++|.......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            467889999999999999999999999998876

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07334 threonine dehydratase; Provisional

Probab=95.05  E-value=0.16  Score=51.88  Aligned_cols=65  Identities=25%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC----CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT----PDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      .+.|.|.+ .||+|+|++|+.+|++.++||.+....+.    .++.+.-.|.|.-     .+.+.++++..+|++
T Consensus       326 ~v~l~I~~-~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDI-RDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            57999999 99999999999999999999999998763    3565444455532     245566777666665

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.91  E-value=0.12  Score=38.21  Aligned_cols=58  Identities=7%  Similarity=0.113  Sum_probs=37.5

Q ss_pred             CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          256 DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      |+||.|.+|++.|...|+||.+-.+..+..++...=++.+.  |.    +...+.|.+.|.+.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GD----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-----CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eC----chhHHHHHHHHhccC
Confidence            78999999999999999999987776432343333333333  21    234667777776544

>PRK07334 threonine dehydratase; Provisional

Probab=94.86  E-value=0.17  Score=51.78  Aligned_cols=65  Identities=8%  Similarity=0.052  Sum_probs=47.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEee---CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKP---RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t---~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      +.|.|.+.||||+|.+|+.+|++.++||.+....+..   .++.+.-.|.+.     +.+.++++++.+.|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999987765320   233444445554     3355677778777755

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=94.83  E-value=0.16  Score=37.49  Aligned_cols=34  Identities=15%  Similarity=0.063  Sum_probs=30.9

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      .+.+...|+||.|++|+..|.+++++|.+....+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~   35 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFI   35 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEec
Confidence            4678899999999999999999999999887766

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.75  E-value=0.22  Score=54.50  Aligned_cols=65  Identities=12%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      ...|.|.+.||+|||.+|+.+++..++||.+.++.+...++.+.-.|.+.     +.+.+.+.++...|+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            35889999999999999999999999999988776432134555556664     344566677766664

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.72  E-value=0.096  Score=38.80  Aligned_cols=56  Identities=20%  Similarity=0.379  Sum_probs=38.1

Q ss_pred             CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       120 Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      |+||.|.+|+++|...|+||.+-.+..+.++...- .+.|.+      ++...+.|...|++.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~------~~~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG------DDREIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee------CchhHHHHHHHHhcc
Confidence            78999999999999999999999998755554433 344433      223456666666553

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.40  E-value=0.28  Score=37.55  Aligned_cols=49  Identities=4%  Similarity=0.044  Sum_probs=36.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCC
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGK  300 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~  300 (414)
                      +.+..+|+||-|+++...|+.+|+|+.+  |.+...... ..=.|+++-+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~--IeSRP~~~~~~~y~F~id~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVH--IESRKSKRRSSEFEIFVDCECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC
Confidence            4555689999999999999999999995  876543322 334567775554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=93.97  E-value=6.1  Score=40.25  Aligned_cols=110  Identities=16%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS  188 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~  188 (414)
                      +...|++.+-.+++|.++++..+|++.|+||.--......+|..--.|.|..        +..++..+.|.+ +...   
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~---  328 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDE---  328 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHH---
Confidence            3455666655789999999999999999999964433322223333455532        222333333333 1100   


Q ss_pred             ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEe---cCcccHHHHHH
Q 015010          189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG---QDHKGLIYDMM  265 (414)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~DrpGLL~~i~  265 (414)
                               .                                  ....+.+    ..+.+.+.|.+   +++||.++++.
T Consensus       329 ---------~----------------------------------~~~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~  361 (404)
T PRK06635        329 ---------I----------------------------------GAESVTY----DDDIAKVSVVGVGMRSHPGVAAKMF  361 (404)
T ss_pred             ---------c----------------------------------CcceEEE----cCCeEEEEEECCCCCCCchHHHHHH
Confidence                     0                                  0001211    12345677766   68999999999


Q ss_pred             HHHHhCCceEEe
Q 015010          266 RTLKDYNTQVSY  277 (414)
Q Consensus       266 ~~L~~~~l~I~~  277 (414)
                      .+|++.|+||..
T Consensus       362 ~~La~~~Ini~~  373 (404)
T PRK06635        362 EALAEEGINIQM  373 (404)
T ss_pred             HHHHHCCCCEEE
Confidence            999999999986

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.97  E-value=0.18  Score=44.30  Aligned_cols=47  Identities=13%  Similarity=0.348  Sum_probs=39.4

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM  295 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v  295 (414)
                      -+.+.+.++||.|.++++.++++|.||.+|+-+...+|..+.-+|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            36788999999999999999999999999999876667656555554

>PRK11899 prephenate dehydratase; Provisional

Probab=93.63  E-value=0.43  Score=46.22  Aligned_cols=53  Identities=9%  Similarity=0.134  Sum_probs=41.8

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK  301 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~  301 (414)
                      -|.+-+..+|+||.|+++..+|+++|+|+..  |.+...+.. ..=+||++.+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence            4667777799999999999999999999994  887655434 4446788877753

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.61  E-value=0.37  Score=52.74  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      .+.|.|.+ .||+|||++|+.+++..++||.+..+.+.. ++.+.-.|.|.-     .+...++++...|+.
T Consensus       666 ~v~I~I~~-~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-----~~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTA-NDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-----YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEE-cCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-----CCHHHHHHHHHHHhc
Confidence            45899999 999999999999999999999999998743 566554555542     245566666555553

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.59  E-value=0.19  Score=41.99  Aligned_cols=52  Identities=8%  Similarity=-0.001  Sum_probs=38.1

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL  396 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~  396 (414)
                      .+-+..+|+||-|++|-..|+++|+|+.+  |.+++.+.+.| .+.||| |.+|..
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~-eY~FfI-dieg~~   94 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGG-DLEVLV-RCEVHR   94 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCc-eEEEEE-EEEeCH
Confidence            55556689999999999999999999995  54443655544 367888 445543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.35  E-value=0.53  Score=51.41  Aligned_cols=64  Identities=11%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      .+.|.|.+.||+|+|.+|+.+++..++||.+..+.+. .++.+.-.|.+.     +.+.+.+..|...|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLT-----ARDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            3588999999999999999999999999999887532 333444455554     334566677766664

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.31  E-value=0.43  Score=52.12  Aligned_cols=64  Identities=11%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .+.|.|.+ .||+|+|++|+.+++..++||.+....+..++.+.-.|.+.-     .+.+.+++|...|+
T Consensus       626 ~v~i~I~~-~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEM-FNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-----RDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEE-eCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence            45899999 999999999999999999999999988744455544455542     23455566655544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.20  E-value=0.27  Score=43.30  Aligned_cols=49  Identities=20%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEec
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITD  160 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~  160 (414)
                      .-|.+.+ .++||.|++++++++++|.||..|+.+.-.+|. +.--|.+.+
T Consensus         3 ~~lsi~~-enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           3 RGLSIIA-ENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             ceeEEEe-ecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            3577889 999999999999999999999999999977774 443344543

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.10  E-value=0.58  Score=39.11  Aligned_cols=52  Identities=2%  Similarity=0.105  Sum_probs=38.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEE-EEEEEEecCCC
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCE-VDLFIMQADGK  300 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~-~D~F~v~~~g~  300 (414)
                      .|.+.+..+|+||-|+++...|+.+|+|+.+  |.+......- .=.|+|+-+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~eY~FfIdieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGGDLEVLVRCEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCceEEEEEEEEeC
Confidence            3566667799999999999999999999995  8765543332 23467775554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.75  E-value=0.087  Score=41.40  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             EEEEEEecC-CcchHHHHHHHHHhCCCeEEEEEEEeCC--------CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          112 LLKFWCFQD-RKGLLHDVTEVLCELELTIKRVKVSTTP--------DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       112 ~i~v~~~~D-r~GLl~~i~~~L~~~glnI~~A~i~T~~--------~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      .|++.+ +| +.|++++++++|+++|+||.+-+-.+..        .....-.|.|..+.      ...+.+++.|.+.-
T Consensus         1 ivtvlg-~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~la   73 (84)
T cd04871           1 IVTLLG-RPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLELA   73 (84)
T ss_pred             CEEEEc-CcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHHHh
Confidence            378999 99 9999999999999999999865443211        12334457777532      23466777776544


Q ss_pred             c
Q 015010          183 G  183 (414)
Q Consensus       183 ~  183 (414)
                      .
T Consensus        74 ~   74 (84)
T cd04871          74 S   74 (84)
T ss_pred             c
Confidence            3

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.65  E-value=0.98  Score=33.61  Aligned_cols=60  Identities=22%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          114 KFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       114 ~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      .+.- +||||=|.+++.+++. |.||..-+-.....+.+.-.+.+..     .+++..+++.+.|++
T Consensus         2 ~v~i-pdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTF-PERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-----PDREDLAELKERLEA   61 (68)
T ss_pred             EEEC-CCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            4667 9999999999999999 9999986554322222221222221     245555666555554

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=92.62  E-value=1.7  Score=44.24  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             eEEEEEE-ecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 015010          247 HTLIQIL-GQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG-NCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR  324 (414)
Q Consensus       247 ~t~v~V~-~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g-~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  324 (414)
                      ...|+|. -.++||+++++..+|++.|++|..  +.++... +...=.|.++        .+..+...+.|.+. .....
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~~  330 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEIG  330 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHcC
Confidence            3444444 367899999999999999999995  4422111 1233344443        12223333444331 11111


Q ss_pred             ee-e-ecCCCCceeeeeeeEEEEe---CCccchHHHHHHHHHhCCceEEEE
Q 015010          325 VA-V-VNRGPDAELLVANPVELSG---RGRPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       325 ~~-~-~~~~~~~~v~~~~~lev~~---~DRpGLL~dIt~~l~~~gl~I~~A  370 (414)
                      +. + ..+.       -..+.|.+   .++||++++|.++|.+.|++|...
T Consensus       331 ~~~i~~~~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        331 AESVTYDDD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             cceEEEcCC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            10 0 0011       12667765   589999999999999999999874

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.37  E-value=0.76  Score=34.07  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=34.4

Q ss_pred             CCeEEEEEEec----CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010          245 PSHTLIQILGQ----DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ  296 (414)
Q Consensus       245 ~~~t~v~V~~~----DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~  296 (414)
                      .++..|+|.++    |.||++++++..|++.|++|..  |+ +    ..-+.|.|.
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~--is-S----~~~~~ilV~   52 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM--IS-S----EISISILVK   52 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE--EE-E----SSEEEEEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE--EE-E----eeeEEEEEe
Confidence            35678888888    8999999999999999999995  54 2    234666664

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.27  E-value=0.94  Score=49.48  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR  316 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~  316 (414)
                      .+.|.|.+.||+|+|.+|+.+++..++||.+.++.+. .++.+.-.|.+.     +.+...+..|...|+
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            4588999999999999999999999999998777632 233444445554     334556666666654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.06  E-value=0.79  Score=50.05  Aligned_cols=64  Identities=17%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .+.|.|.+ .||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-     .+...+..|...|+
T Consensus       610 ~v~I~I~~-~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEA-VDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-----KNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEE-ecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence            56899999 999999999999999999999999998854565544454432     23455555555444

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=91.92  E-value=2.8  Score=42.65  Aligned_cols=104  Identities=20%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CeEEEEEE---ecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-
Q 015010          246 SHTLIQIL---GQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR-  321 (414)
Q Consensus       246 ~~t~v~V~---~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-  321 (414)
                      +...|.|.   -.++||++.++..+|.+.+++|..  +.+ +..+ ..=.|.+.        .+..++..+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~-~~Is~~V~--------~~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSE-TSISLTVD--------ETDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCC-ceEEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence            45677777   467899999999999999999984  432 1121 11234553        12233344444443311 


Q ss_pred             C-cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010          322 P-LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFS  369 (414)
Q Consensus       322 ~-~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~  369 (414)
                      . ..+. ..++       -..|.|.+.   ++||+++++..+|.+.|++|..
T Consensus       327 ~~~~i~-~~~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       327 GLDRVE-VEEG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CCceEE-EeCC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1 0010 0111       125666665   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=91.81  E-value=0.85  Score=44.00  Aligned_cols=54  Identities=13%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK  301 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~  301 (414)
                      ..|.+.+..+|+||-|+++...|+.+|+|..  +|.+...... ..-+||++-+|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence            4788888999999999999999999999998  5886544433 4556788866664

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=91.54  E-value=0.64  Score=47.21  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      +.+-+...|+||.|+++-..|+..|||+.+  |..++.+.+.| .+.||| |.+|..-+
T Consensus       298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~-~Y~Ffi-d~eg~~~d  352 (386)
T PRK10622        298 TTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPW-EEMFYL-DVQANLRS  352 (386)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCc-eEEEEE-EEeCCCCC
Confidence            345566679999999999999999999985  54433555544 568988 66675433

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.14  E-value=0.85  Score=42.21  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010          245 PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ  296 (414)
Q Consensus       245 ~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~  296 (414)
                      +....+.+.-.|+||.+..++..|.++++||..-++.....|+.+.-+..++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            3445677888999999999999999999999998888655666666655554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.00  E-value=1.4  Score=32.74  Aligned_cols=59  Identities=15%  Similarity=0.248  Sum_probs=38.2

Q ss_pred             EEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEE-EecCCCCCCChHHHHHHHHHHHH
Q 015010          251 QILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI-MQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       251 ~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~-v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      .|.-+||||=|.+++..++. +.||..-+-.  ..+.....+++ +.     ..+++..+.+.+.|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~ie-----~~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGIQ-----VPDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            56779999999999999999 9999864332  22222333333 33     1234566777776654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=90.99  E-value=4.6  Score=42.09  Aligned_cols=109  Identities=20%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             CeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          246 SHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       246 ~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      +.+.|.|.+.   +.||+++++..+|+++|++|..  |... .. ...=.|.++.        +..+...+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~-ss-e~sIsf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQG-SS-ESNISLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEec-CC-CceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            4567788764   6899999999999999999985  4311 11 1222345541        12233334444444321


Q ss_pred             --cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEEEec
Q 015010          323 --LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       323 --~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                        ..+... ..       -..|.|.|.   +++|++.++..+|.+.|++|..---++
T Consensus       388 ~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        388 LVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             cCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence              001000 01       126777775   699999999999999999998544333

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.96  E-value=1.2  Score=41.20  Aligned_cols=52  Identities=13%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEec
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITD  160 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~  160 (414)
                      +....|.+.- .||||.+.+|+.+|.++|+||...++.... +|.++-+..|..
T Consensus       146 ~~g~~L~~~~-~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       146 GEHPAILLEH-NDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             CCccEEEEEe-CCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            3456677788 999999999999999999999999998743 566776666643

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=90.75  E-value=0.96  Score=43.64  Aligned_cols=56  Identities=13%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             eeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          339 ANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       339 ~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      .|.|-+...|+||-|+++-.+|+..|||+.+  |..++.+.+.| .+.||| |-+|..=+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~-~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLG-EYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCe-eEEEEE-EEecCcCc
Confidence            3567777779999999999999999999985  54443665554 447888 66676544

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.74  E-value=1.5  Score=47.57  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=48.3

Q ss_pred             EEEecCC-CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEE-EEEecCCCCCCChHHHHHHHHH
Q 015010          237 IAVDNSF-SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDL-FIMQADGKKIVDPSKQDALCSR  314 (414)
Q Consensus       237 V~v~~~~-~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~-F~v~~~g~~~~~~~~~~~l~~~  314 (414)
                      |.++... ..-.+.|.|.+.||+|||.+|+.+|+..+.||.+....  +.......+ |.+.     +.+...+..|...
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~~i~-----v~n~~~L~~i~~~  688 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQFTIE-----VKNLNHLGRVLAR  688 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEEEEE-----ECcHHHHHHHHHH
Confidence            4455443 33457899999999999999999999999999986655  333333333 3333     3344455666555


Q ss_pred             H
Q 015010          315 L  315 (414)
Q Consensus       315 L  315 (414)
                      |
T Consensus       689 l  689 (701)
T COG0317         689 L  689 (701)
T ss_pred             H
Confidence            5

>PRK06382 threonine dehydratase; Provisional

Probab=90.66  E-value=1.8  Score=44.17  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=48.9

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE----eCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS----TTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~----T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      ....+.++|.- +|+||-|++++.+|.++|+||.+-...    ....+...-+|.|...     +++..++|.+.|++
T Consensus       327 ~~~~~rl~v~v-~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNI-PDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEc-CCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            34578999999 999999999999999999999987664    3234555556766542     33444456555544

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=90.33  E-value=15  Score=38.12  Aligned_cols=107  Identities=22%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             CCeEEEEEEecC---cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          245 PSHTLIQILGQD---HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       245 ~~~t~v~V~~~D---rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      .+.+.|+|...-   .+|.++++...|.++|++|..  |.+. .+ ...=.|.+..        .......+.|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~-~~~i~~~v~~--------~~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-IS-EVSISFTVPE--------SDAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cC-CCeEEEEEch--------hhHHHHHHHHHHHHhh
Confidence            455667776643   459999999999999999985  5422 22 1124455531        1122233333333322


Q ss_pred             Cc-ceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          322 PL-RVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       322 ~~-~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      .. .+.. .+++       ..|.+.|.   ..||+.+.+..+|.+.++||...-
T Consensus       373 ~~~~v~~-~~~~-------a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         373 LLAEVEV-EEGL-------ALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             hcceEEe-eCCe-------eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            21 1110 1111       14555544   689999999999999999999766

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.02  E-value=0.53  Score=48.21  Aligned_cols=60  Identities=13%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK  408 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~  408 (414)
                      ..|-+.-+|+||.+..|+..|.++|+||..-+..+  .|+.  +.   ++.+.++ ++.++ .+++|++
T Consensus       339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~--A~---~iie~D~-~~~~~-~~~~i~~  398 (409)
T PRK11790        339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEI--GY---VVIDVDA-DYAEE-ALDALKA  398 (409)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCE--EE---EEEEeCC-CCcHH-HHHHHHc
Confidence            37778999999999999999999999999999988  8877  44   4445555 44444 5677764

>PRK08210 aspartate kinase I; Reviewed

Probab=89.62  E-value=7.7  Score=39.52  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             CeEEEEEEecCc-ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 015010          246 SHTLIQILGQDH-KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR  324 (414)
Q Consensus       246 ~~t~v~V~~~Dr-pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  324 (414)
                      +...|+|...+. ||.+++|..+|+++|+||..  +.+.  ..  .=.|.+.        .+..+++.+.|.+ +..  .
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~~--~~--~is~~v~--------~~~~~~a~~~l~~-~~~--~  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INIF--PT--EVVFTVS--------DEDSEKAKEILEN-LGL--K  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEec--Cc--eEEEEEc--------HHHHHHHHHHHHH-hCC--c
Confidence            445667766555 99999999999999999996  3321  11  1234543        1223344343433 111  1


Q ss_pred             eeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010          325 VAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFS  369 (414)
Q Consensus       325 ~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~  369 (414)
                      +.. ..+.       ..|.|.+.   ++||++.++..+|.+.|++|..
T Consensus       333 v~~-~~~~-------a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 PSV-RENC-------AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EEE-eCCc-------EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            111 1111       25666665   7999999999999999999975

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.47  E-value=1.5  Score=44.94  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      ....|.+.- .|+||.++.|+.+|+++|+||..-+.++ .++.++-+|-+..
T Consensus       337 ~~~rlii~h-~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIH-ENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEe-CCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCC
Confidence            556777788 9999999999999999999999999988 6788877776644

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.18  E-value=4  Score=31.84  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCC-HHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHT-RKRREETIHHLEA  180 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~-~~~~~~i~~~L~~  180 (414)
                      .+.+.- +||||=|++++.+|+  +.||....-.....+.+--.+.+..+     + ++..+++.+.|++
T Consensus         3 vl~v~i-pD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-----~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTI-PERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-----NGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEec-CCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-----CcHHHHHHHHHHHHH
Confidence            467778 999999999999999  66777444333222332222333321     3 4455566555544

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=89.17  E-value=0.25  Score=38.76  Aligned_cols=29  Identities=14%  Similarity=0.335  Sum_probs=27.1

Q ss_pred             EEEEEecC-cccHHHHHHHHHHhCCceEEe
Q 015010          249 LIQILGQD-HKGLIYDMMRTLKDYNTQVSY  277 (414)
Q Consensus       249 ~v~V~~~D-rpGLL~~i~~~L~~~~l~I~~  277 (414)
                      +|+|.++| +.|++++++.+|+++|+||.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~   30 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR   30 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence            47899999 999999999999999999975

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=88.86  E-value=1  Score=33.37  Aligned_cols=31  Identities=29%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             eEEEEeC----CccchHHHHHHHHHhCCceEEEEE
Q 015010          341 PVELSGR----GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       341 ~lev~~~----DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      .|.|.+.    |.||+++.|+.+|.+.|++|+..-
T Consensus         8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            5666665    799999999999999999998766

>PLN02551 aspartokinase

Probab=88.79  E-value=5  Score=42.48  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH---HHH
Q 015010          245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL---RME  318 (414)
Q Consensus       245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L---~~~  318 (414)
                      .+.+.|+|.+.   +.||.+.++...|+++|++|..  |.++ .   .-=.|.++.+.  +..   .+.+.+.+   ...
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--IssS-e---~sIs~~v~~~~--~~~---~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VATS-E---VSISLTLDPSK--LWS---RELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eecc-C---CEEEEEEehhH--hhh---hhhHHHHHHHHHHH
Confidence            34567888765   6899999999999999999995  5422 2   22245664211  111   11222222   222


Q ss_pred             HcCCcceeeecCCCCceeeeeeeEEEEeC--CccchHHHHHHHHHhCCceEEEEEEec
Q 015010          319 LLRPLRVAVVNRGPDAELLVANPVELSGR--GRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       319 l~~~~~~~~~~~~~~~~v~~~~~lev~~~--DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      |.....+.. ..    .+   .+|.|.|.  .+||++.++-.+|.+.|++|..--.++
T Consensus       433 l~~~~~V~v-~~----~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        433 LEKIAVVNL-LQ----GR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             hhcCCeEEE-eC----CE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence            321111110 01    11   24555543  689999999999999999998655444

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=88.61  E-value=30  Score=35.12  Aligned_cols=106  Identities=14%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             CeEEEEEE---EecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          109 DVFLLKFW---CFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       109 ~~~~i~v~---~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      +...|+|.   . .+++|.++++..+|.++|+||..-...  .....+ .|.|..        +..++..+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~-~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~I-s~~V~~--------~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       259 NVTRVTVHGLGM-LGKRGFLARIFGALAERNINVDLISQT--PSETSI-SLTVDE--------TDADEAVRALKDQSGA-  325 (401)
T ss_pred             CEEEEEEecCCC-CCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceE-EEEEeH--------HHHHHHHHHHHHHHHh-
Confidence            45678887   5 678999999999999999999743221  122222 355532        1223333333332210 


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIY  262 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~  262 (414)
                                  .                                 . ...+.+    ..+.+.|.|.+.   ++||+++
T Consensus       326 ------------~---------------------------------~-~~~i~~----~~~~a~IsvVG~~~~~~~g~~a  355 (401)
T TIGR00656       326 ------------A---------------------------------G-LDRVEV----EEGLAKVSIVGAGMVGAPGVAS  355 (401)
T ss_pred             ------------c---------------------------------C-CceEEE----eCCeEEEEEECCCcccCccHHH
Confidence                        0                                 0 001212    234567777774   7899999


Q ss_pred             HHHHHHHhCCceEEe
Q 015010          263 DMMRTLKDYNTQVSY  277 (414)
Q Consensus       263 ~i~~~L~~~~l~I~~  277 (414)
                      ++..+|.+.|+||..
T Consensus       356 ~i~~~L~~~gIni~~  370 (401)
T TIGR00656       356 EIFSALEEKNINILM  370 (401)
T ss_pred             HHHHHHHHCCCcEEE
Confidence            999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=88.17  E-value=1.6  Score=38.34  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             HHHHHHHHHcCcEEEEEEE-EecCCEEEEEEEEEc-----CCCCC-------------HHHHHHHHHHhCCCCCcCCccc
Q 015010           35 CDLCRIILLFGLSISRGDL-SKDGKWCYLVFWVVG-----KPTTR-------------WSLLKNRLLEVCPSYFSTSRIY   95 (414)
Q Consensus        35 ~~~~~vl~~~~L~I~~a~i-~tdg~~~~d~f~v~~-----~~g~~-------------~~~l~~~l~~~~~~~~~~~~~~   95 (414)
                      ..++..|.+.|++|..+.. .+.+      --+..     ..|.|             ...|+..++++.|-..-.    
T Consensus        16 ~~Vvk~l~~~GisV~~g~~~~~gd------IEI~~t~iAka~gVdRrvV~~Ti~~I~sd~~L~~if~nl~P~a~l~----   85 (167)
T COG2150          16 KKVVKKLLESGISVKNGGKIYCGD------IEIPITKIAKATGVDRRVVYATIELIESDEELRRIFENLEPVASLA----   85 (167)
T ss_pred             HHHHHHHHHhCeeEccCCceeeCc------EEechHHHHHHhCcchHhHHHHHHHHhcCHHHHHHHHhccchhhHH----
Confidence            5789999999999998875 3322      11211     12333             334555555554431100    


Q ss_pred             ccccccccCCCCCCeEEEEEEE-ecCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010           96 SYRLENQQQPKPPDVFLLKFWC-FQDRKGLLHDVTEVLCELELTIKRVKV  144 (414)
Q Consensus        96 ~~~~~~~~~~~~~~~~~i~v~~-~~Dr~GLl~~i~~~L~~~glnI~~A~i  144 (414)
                          .+  .+ --+.-+|++.. +.+.||+++.+++.++++||+|+.+-.
T Consensus        86 ----~v--A~-~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          86 ----DV--AP-LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             ----HH--HH-hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence                00  01 11334455554 277899999999999999999998755

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=88.08  E-value=1.5  Score=41.20  Aligned_cols=66  Identities=15%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE--EEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD--LFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d--~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ....|.+.. .|.||.+++|+++|+..|+||-+--+-- ....++.  ++.+.+.      ..-+++.+++|++..
T Consensus        76 krHvinclV-qnEpGvlsRisGvlAaRGfNIdSLvVc~-tevk~LsrmTIVl~Gt------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLV-QNEPGVLSRISGVLAARGFNIDSLVVCL-TEVKALSRMTIVLQGT------DGVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEe-cCCchHHHHHHHHHHhccCCchheeeec-hhhhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence            456788888 8999999999999999999999877754 2333443  4556653      223455555555544

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=87.57  E-value=3  Score=42.35  Aligned_cols=52  Identities=12%  Similarity=0.244  Sum_probs=40.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCC
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGK  300 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~  300 (414)
                      .|.+-+..+|+||.|+++...|+.+|+|+..  |.+...... ..=+|+++.+|.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~  349 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQAN  349 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCC
Confidence            5667677789999999999999999999994  887644434 445678886675

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=87.42  E-value=2.7  Score=45.62  Aligned_cols=63  Identities=21%  Similarity=0.341  Sum_probs=45.5

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEE-EEEecCCCCCCCHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDL-FFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .+.|.|.+ .||+|||++|+.+|+..+.||.+....+. ++....+ |.+.-     .+...+.+|-.+|.
T Consensus       627 ~~~i~v~~-~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v-----~n~~~L~~i~~~l~  690 (701)
T COG0317         627 PVDIEIRA-YDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEV-----KNLNHLGRVLARLK  690 (701)
T ss_pred             EEEEEEEE-ccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEE-----CcHHHHHHHHHHHh
Confidence            67999999 99999999999999999999999988885 4433332 33322     23445555544444

>PRK06382 threonine dehydratase; Provisional

Probab=87.01  E-value=3.7  Score=42.00  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE---eeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA---KPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t---~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      ....+.+.|.-+|+||-|.+++..|.++|+||.+-....   ....+...=+|.++..     +++..+.|.+.|++
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            445678999999999999999999999999998744321   1111233344555411     23444566666644

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.77  E-value=8.6  Score=43.07  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=66.3

Q ss_pred             CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      .+.+.|.|.+.   ++||++.++..+|+++|++|..  |... .+ ..-=.|.++.        +..+...+.|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Isqs-sS-e~sIsf~V~~--------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--ITQS-SS-EYSISFCVPQ--------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EEcC-CC-CceEEEEEeH--------HHHHHHHHHHHHHHHH
Confidence            45677888765   6799999999999999999985  3311 22 1222455541        1222333334333321


Q ss_pred             CcceeeecCCCCceeee---eeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          322 PLRVAVVNRGPDAELLV---ANPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~---~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      +..    .... ..+.+   -..|.|.|.   ++||++.++-.+|.+.|++|..--
T Consensus       381 el~----~~~~-~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        381 ELK----EGLL-EPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             Hhc----cCCc-ceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            100    0000 01111   126667665   789999999999999999998653

>PRK08818 prephenate dehydrogenase; Provisional

Probab=86.36  E-value=3.6  Score=41.52  Aligned_cols=46  Identities=11%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             eeEEEEe-CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEE
Q 015010          340 NPVELSG-RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLD  390 (414)
Q Consensus       340 ~~lev~~-~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~  390 (414)
                      +.|-+.- +|+||.|++|+..|.++|+||.+-.+..    .++|..- |||.
T Consensus       296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~----~r~~~y~-f~i~  342 (370)
T PRK08818        296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR----TPAGELH-FRIG  342 (370)
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec----ccCceEE-EEEE
Confidence            3444455 4999999999999999999999877722    3344554 8884

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.65  E-value=4.1  Score=36.04  Aligned_cols=68  Identities=16%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      ...+.+.- .|.||.|+++++.|+..|+||.+-.+.-+.+....=+-.|...     ++...++|...|.....
T Consensus         4 ~rilsvlv-~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLV-ENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEE-ECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence            35677888 9999999999999999999999988876555443222233321     34566777777777653

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.19  E-value=6.4  Score=39.73  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE---eC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS---TT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~---T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      ....+.|.- +||||.|++++..++++|.||.+-.-.   .. ..+.+.-.+.+...     +++..+.|.+.|++
T Consensus       304 r~~~l~v~l-~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       304 RKVRIETVL-PDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             CEEEEEEEe-CCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            356899999 999999999999999999999987443   21 23454444545431     34455556555544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK12483 threonine dehydratase; Reviewed

Probab=85.10  E-value=50  Score=35.00  Aligned_cols=118  Identities=17%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             CeeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe-cCCEEEEEEEEEcCCC-CCH-HHHHHHHHHhCCCCCcCCc--
Q 015010           19 DCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK-DGKWCYLVFWVVGKPT-TRW-SLLKNRLLEVCPSYFSTSR--   93 (414)
Q Consensus        19 ~~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t-dg~~~~d~f~v~~~~g-~~~-~~l~~~l~~~~~~~~~~~~--   93 (414)
                      .-..+.|.-|||||-|.+++.+|...  +|..-.... ..+-+. ++....-.+ .+. +.|...|++..-.....+.  
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne  420 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE  420 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence            34468899999999999999999988  777665542 222222 233322223 232 3456666554332211111  


Q ss_pred             --cccccccccc-CCCCCCeEEEEEEEecCCcchHHHHHHHHHhC-CCeEE
Q 015010           94 --IYSYRLENQQ-QPKPPDVFLLKFWCFQDRKGLLHDVTEVLCEL-ELTIK  140 (414)
Q Consensus        94 --~~~~~~~~~~-~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~-glnI~  140 (414)
                        ....+..++- .+....--.+.|.- |.|||=|.+.+..|... +++-.
T Consensus       421 ~~k~h~r~~~g~~~~~~~~E~~~~v~i-PE~pGa~~~f~~~l~~~~niTeF  470 (521)
T PRK12483        421 LAKLHIRHMVGGRAPLAHDERLFRFEF-PERPGALMKFLSRLGPRWNISLF  470 (521)
T ss_pred             HHHHHHHhccCCCCCCCCceEEEEEEc-CCCCcHHHHHHHHhCCCcceeee
Confidence              0112222221 12233456677777 99999999999999852 44443

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.03  E-value=3.3  Score=36.58  Aligned_cols=68  Identities=7%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      .+.+.-.|.||.|.++++.|+..|+||.+-.+..+......--++.+.  |    ++...+++.+.|.+.+.-.
T Consensus         6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLidV~   73 (163)
T COG0440           6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G----DEQVLEQIIKQLNKLIDVL   73 (163)
T ss_pred             EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C----CcchHHHHHHHHHhhccce
Confidence            577888999999999999999999999986665322222222222322  2    2355788888887777533

>PRK08198 threonine dehydratase; Provisional

Probab=84.64  E-value=9.1  Score=39.00  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe----CCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST----TPDGRVMDLFFITDTRELLHTRKRREETIHHLEA  180 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T----~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~  180 (414)
                      ....+.|.- +|+||-|+++...+++.|.||.+-...-    .+.+.+--.+.|..     .+++..+.|.+.|++
T Consensus       326 r~~~l~v~l-~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~l~~~L~~  395 (404)
T PRK08198        326 RYLKLRVRL-PDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-----RGPEHIEEILDALRD  395 (404)
T ss_pred             CEEEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            467899999 9999999999999999999999877653    12343332233322     134455566555544

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=84.58  E-value=8.1  Score=30.07  Aligned_cols=61  Identities=7%  Similarity=0.048  Sum_probs=35.8

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCC-hHHHHHHHHHHHH
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVD-PSKQDALCSRLRM  317 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~-~~~~~~l~~~L~~  317 (414)
                      ++.|.-+||||=|.+++.+|.  +.||....-.. ...+.+.-.+.+.-     .+ ++..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSV-----ANGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence            577888999999999999999  44555322221 11123333334441     22 4556666666644

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=83.83  E-value=5.8  Score=38.50  Aligned_cols=67  Identities=12%  Similarity=0.179  Sum_probs=44.1

Q ss_pred             eEEEEEEecC-cccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          247 HTLIQILGQD-HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       247 ~t~v~V~~~D-rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      .|.+.+..++ +||-|+++...|+++|+|+.+  |.+...... ..=.|+++-+|.. .+ ...+++.+.|++
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~~y~F~vd~eg~~-~~-~~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLGTYFFFIDVEGHI-DD-VLVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCccEEEEEEEEccC-CC-HHHHHHHHHHHH
Confidence            4556666655 699999999999999999995  876543322 3345778766653 33 234444444543

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.55  E-value=8.1  Score=38.99  Aligned_cols=33  Identities=12%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeE
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYG  278 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A  278 (414)
                      ....+.|.-+||||.|.+++..+++++.||.+-
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i  336 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKI  336 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence            334789999999999999999999999999863

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK08210 aspartate kinase I; Reviewed

Probab=83.49  E-value=55  Score=33.29  Aligned_cols=99  Identities=15%  Similarity=0.158  Sum_probs=65.4

Q ss_pred             CeeEEEEeCCCC-CChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCccccc
Q 015010           19 DCTVITVNCPDK-TGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSY   97 (414)
Q Consensus        19 ~~~~v~v~~~d~-~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~   97 (414)
                      +...|+|...+. +|.+.++...|+++|.+|---..+++.    -.|.+...   +.+.+...|.+++.           
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~---~~~~a~~~l~~~~~-----------  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDE---DSEKAKEILENLGL-----------  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHH---HHHHHHHHHHHhCC-----------
Confidence            444677766655 999999999999999998877544332    34555321   11223333443221           


Q ss_pred             ccccccCCCCCCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEE
Q 015010           98 RLENQQQPKPPDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKR  141 (414)
Q Consensus        98 ~~~~~~~~~~~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~  141 (414)
                        .+   ....+...|.+.+ .   ++||+++++..+|++.|+||..
T Consensus       332 --~v---~~~~~~a~isvvG-~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 --KP---SVRENCAKVSIVG-AGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --cE---EEeCCcEEEEEEc-CCcCCCccHHHHHHHHHHhCCCCEEE
Confidence              00   0112456777776 5   7899999999999999999974

>PRK09084 aspartate kinase III; Validated

Probab=83.39  E-value=23  Score=36.69  Aligned_cols=104  Identities=19%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      .+.+.|+|.+.   +.||.++++...|+++|++|..  |.++ .   .-=.|.++....  . ......+.+.+.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~ss-e---~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITTS-E---VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eecc-C---cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence            34567888765   6889999999999999999995  5422 1   223456642111  0 11112233334344432


Q ss_pred             CcceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCc
Q 015010          322 PLRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSI  365 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl  365 (414)
                      ...+.. ..+       -..|.|.|.   ++||++.++-.+|.+.++
T Consensus       375 ~~~i~~-~~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        375 LCRVEV-EEG-------LALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             CCeEEE-ECC-------eEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence            111111 111       126777776   789999999999987543

>PRK09181 aspartate kinase; Validated

Probab=83.37  E-value=21  Score=37.31  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=67.0

Q ss_pred             CeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          246 SHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       246 ~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      +.+.|+|.+.   +.+|+++++..+|++++++|..  +.++ .   ..-.|.+..+      ..+.+++.+.|++.+...
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss-~---~sis~~v~~~------~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATN-A---NTITHYLWGS------LKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEec-C---cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence            5667777654   6899999999999999999983  4422 1   2223455321      123455555565544311


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeCC--ccchHHHHHHHHHhCCceEEEEEE
Q 015010          323 LRVAVVNRGPDAELLVANPVELSGRG--RPLVFYDITLALKILSISIFSVEI  372 (414)
Q Consensus       323 ~~~~~~~~~~~~~v~~~~~lev~~~D--RpGLL~dIt~~l~~~gl~I~~A~I  372 (414)
                       .+.  ..+.       .+|.+.|.+  +||+..++-.+|.+.|++|..---
T Consensus       396 -~i~--~~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        396 -EVT--VRKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             -eEE--ECCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence             111  1111       256666654  899999999999999999975433

>TIGR00657 asp_kinases aspartate kinase

Probab=83.20  E-value=29  Score=35.82  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CeEEEEEEecCc--ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 015010          246 SHTLIQILGQDH--KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPL  323 (414)
Q Consensus       246 ~~t~v~V~~~Dr--pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~  323 (414)
                      +...|+|.+.+-  ||++.++..+|+++|++|..  |... ..+ ..=.|.++.        +..++..+.|....... 
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~-~se-~sIs~~I~~--------~~~~~a~~~L~~~~~~~-  367 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQS-SSE-TSISFTVDK--------EDADQAKTLLKSELNLS-  367 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEec-CCC-ceEEEEEEH--------HHHHHHHHHHHHHHHhc-
Confidence            455677766443  79999999999999999985  4321 121 112344441        11222223332221111 


Q ss_pred             ceeeecCCCCceeee---eeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          324 RVAVVNRGPDAELLV---ANPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       324 ~~~~~~~~~~~~v~~---~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      .+        ..+.+   -..|.|.+.   ++||++++|..+|.+.|++|..--
T Consensus       368 ~~--------~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       368 AL--------SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             Cc--------ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            01        01111   126677554   789999999999999999997653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09034 aspartate kinase; Reviewed

Probab=83.12  E-value=17  Score=37.84  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      +.+.|++..   .++||+++++...|+++|++|..  |.   .+. ..=.|.++..  .+. ...+..+.+.|...+.- 
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~---ss~-~sis~~v~~~--~~~-~a~~~~l~~el~~~~~~-  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP---SGI-DDLSIIIRER--QLT-PKKEDEILAEIKQELNP-  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec---CCC-cEEEEEEeHH--Hhh-HHHHHHHHHHHHHhhCC-
Confidence            345667764   67899999999999999999996  42   221 2234666421  011 11113344444433320 


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCc
Q 015010          323 LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPR  399 (414)
Q Consensus       323 ~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~  399 (414)
                      ..+.. .+.       -..|.+.|.   ++||+++++-.+|.+.|++|..---++  .. .  -+ .|.|.+.+.     
T Consensus       377 ~~I~~-~~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~--Se-~--~I-s~vV~~~d~-----  437 (454)
T PRK09034        377 DELEI-EHD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS--SE-I--SI-MFGVKNEDA-----  437 (454)
T ss_pred             ceEEE-eCC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC--Cc-c--eE-EEEEcHHHH-----
Confidence            01100 111       126677554   789999999999999999998764434  11 1  11 355543321     


Q ss_pred             hHHHHHHHHHHcc
Q 015010          400 NKIEDLVRKILMG  412 (414)
Q Consensus       400 ~~~~~~i~~~L~~  412 (414)
                      ++.+..|.+++.+
T Consensus       438 ~~av~~LH~~f~~  450 (454)
T PRK09034        438 EKAVKAIYNAFFK  450 (454)
T ss_pred             HHHHHHHHHHHhc
Confidence            1235666666654

>PRK06291 aspartate kinase; Provisional

Probab=83.07  E-value=63  Score=33.66  Aligned_cols=106  Identities=11%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             CeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          109 DVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       109 ~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      +...|++.+ .   +.+|+++++..+|+++|+||.--...+  ....+ .|.|..        ...++..+.|.+.+...
T Consensus       320 ~valIsI~g-~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sI-sf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISG-AGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNI-SLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeC-CCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceE-EEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            466788876 4   689999999999999999998643333  22222 344532        12222323333333210


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIY  262 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~  262 (414)
                                                    .                 ...|.+.    .+...|.|.+.   +++|+..
T Consensus       388 ------------------------------~-----------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~  416 (465)
T PRK06291        388 ------------------------------L-----------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAG  416 (465)
T ss_pred             ------------------------------c-----------------CcceEEe----CCEEEEEEEcCCccCCcChHH
Confidence                                          0                 0012221    23457777775   6899999


Q ss_pred             HHHHHHHhCCceEEe
Q 015010          263 DMMRTLKDYNTQVSY  277 (414)
Q Consensus       263 ~i~~~L~~~~l~I~~  277 (414)
                      ++..+|...|++|..
T Consensus       417 rif~aL~~~~I~v~~  431 (465)
T PRK06291        417 RIFSALGESGINIKM  431 (465)
T ss_pred             HHHHHHHHCCCCEEE
Confidence            999999999999984

>PLN02317 arogenate dehydratase

Probab=82.95  E-value=6.5  Score=39.75  Aligned_cols=66  Identities=12%  Similarity=0.210  Sum_probs=44.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE---------------EEEEEEEecCCCCCCChHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC---------------EVDLFIMQADGKKIVDPSKQDAL  311 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~---------------~~D~F~v~~~g~~~~~~~~~~~l  311 (414)
                      .|.|.+.-+|+||-|+++..+|+.+|+|+.+  |.+......               ..=.||++-+|.. .+ .+.+..
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtk--IESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d-~~~~~a  358 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTK--IESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-AD-PRAQNA  358 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEE--EEeeecCCCCccccccccccccccccEEEEEEEEcCc-CC-HHHHHH
Confidence            4677777799999999999999999999995  876543322               2346788866653 33 233333


Q ss_pred             HHHHH
Q 015010          312 CSRLR  316 (414)
Q Consensus       312 ~~~L~  316 (414)
                      .+.|+
T Consensus       359 L~~L~  363 (382)
T PLN02317        359 LAHLQ  363 (382)
T ss_pred             HHHHH
Confidence            34443

>PRK06545 prephenate dehydrogenase; Validated

Probab=82.77  E-value=4.3  Score=40.72  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010          245 PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF  281 (414)
Q Consensus       245 ~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~  281 (414)
                      +.++.|.|.-+||||-+++++..|...|+||.+-+|.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            4678899999999999999999999999999998886

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=82.31  E-value=9.7  Score=32.43  Aligned_cols=52  Identities=23%  Similarity=0.369  Sum_probs=43.6

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      +.-+.+.+.- .||.|.|+++-.++++.+|||+.-+..--.+|++--+..+..
T Consensus        70 ~ri~TL~l~l-edr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~  121 (150)
T COG4492          70 ERIITLSLSL-EDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT  121 (150)
T ss_pred             ceEEEEEEEE-hhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence            3567888999 999999999999999999999999888767887655555543

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=82.01  E-value=5.4  Score=41.19  Aligned_cols=68  Identities=6%  Similarity=-0.013  Sum_probs=45.9

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEE--EEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVD--LFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D--~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      ....|.|.+..+|+||-|+++-..|+.+|+|+.+  |.+........+  .|+|+-+|..    ...+++.+.|+.
T Consensus        28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfVD~Eg~~----~~l~~aL~~Lk~   97 (464)
T TIGR01270        28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLVDVELFH----YGLQEAMDLLKS   97 (464)
T ss_pred             CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEEEEEcCH----HHHHHHHHHHHH
Confidence            3445667777799999999999999999999996  876544333333  5777744442    234444455544

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=81.91  E-value=6.8  Score=27.26  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEe
Q 015010          113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT  159 (414)
Q Consensus       113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~  159 (414)
                      |++.+-++.+|.++++...|.++|++|.........+|..--.|.|.
T Consensus         3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~   49 (61)
T cd04891           3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP   49 (61)
T ss_pred             EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence            44443388899999999999999999977555332333222246554

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.74  E-value=3.2  Score=43.98  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=44.1

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK  408 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~  408 (414)
                      .+=+.-.|+||.+..|+..|.+.++||....++....|+.  +.   ++...++ +++++ .+++|++
T Consensus       454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al---~~i~~D~-~v~~~-~l~~i~~  514 (526)
T PRK13581        454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--AL---MVLSVDD-PVPEE-VLEELRA  514 (526)
T ss_pred             EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EE---EEEECCC-CCCHH-HHHHHhc
Confidence            3444568999999999999999999999999987444555  44   3333433 55555 6777764

>PLN02551 aspartokinase

Probab=81.55  E-value=77  Score=33.63  Aligned_cols=108  Identities=15%  Similarity=0.299  Sum_probs=66.1

Q ss_pred             CeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          109 DVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       109 ~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      +.+.|+|.+ .   +++|.+++|...|+++|++|.--  .| . ...+ .|.+....     ....+.+++.+...+.. 
T Consensus       365 ~v~li~i~~-~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-S-e~sI-s~~v~~~~-----~~~~~~i~~~l~~l~~e-  432 (521)
T PLN02551        365 NVTMLDIVS-TRMLGQYGFLAKVFSTFEDLGISVDVV--AT-S-EVSI-SLTLDPSK-----LWSRELIQQELDHLVEE-  432 (521)
T ss_pred             CeEEEEEec-CCCCCcccHHHHHHHHHHHcCCcEEEE--ec-c-CCEE-EEEEehhH-----hhhhhhHHHHHHHHHHH-
Confidence            567888876 5   68999999999999999999854  33 2 2222 35554321     11122233333332221 


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec--CcccHHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ--DHKGLIYD  263 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~--DrpGLL~~  263 (414)
                                                +. ..                  ..|.+.    .+...|.|.+.  .+||++.+
T Consensus       433 --------------------------l~-~~------------------~~V~v~----~~vAiISvVG~~~~~~gvaar  463 (521)
T PLN02551        433 --------------------------LE-KI------------------AVVNLL----QGRSIISLIGNVQRSSLILEK  463 (521)
T ss_pred             --------------------------hh-cC------------------CeEEEe----CCEEEEEEEccCCCCccHHHH
Confidence                                      00 00                  012222    24556666654  67999999


Q ss_pred             HHHHHHhCCceEEe
Q 015010          264 MMRTLKDYNTQVSY  277 (414)
Q Consensus       264 i~~~L~~~~l~I~~  277 (414)
                      +..+|+..|+||..
T Consensus       464 iF~aLa~~gInV~m  477 (521)
T PLN02551        464 VFRVLRTNGVNVQM  477 (521)
T ss_pred             HHHHHHHCCCCeEE
Confidence            99999999999984

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.34  E-value=4.4  Score=42.95  Aligned_cols=50  Identities=12%  Similarity=0.151  Sum_probs=38.3

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM  295 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v  295 (414)
                      .+..+.+...|+||.+..++..|.++++||..-++.....|+.+.-++.+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            44556667799999999999999999999998777644355555555554

>PLN02317 arogenate dehydratase

Probab=80.34  E-value=6.6  Score=39.74  Aligned_cols=54  Identities=13%  Similarity=0.239  Sum_probs=38.1

Q ss_pred             eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCcee-------------eEEEEEEEEcCCCCC
Q 015010          340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDRE-------------WEVYRILLDEADGNL  396 (414)
Q Consensus       340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~-------------~~~d~Fyv~d~~g~~  396 (414)
                      +.|-+.-.|+||.|+++-.+|+..|||+.+-.  ++....+.             .-.+.||| |-+|..
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE--SRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~  350 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIE--SRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASM  350 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE--eeecCCCCccccccccccccccccEEEEE-EEEcCc
Confidence            45666668899999999999999999999544  32233321             13578999 556654

>PRK09181 aspartate kinase; Validated

Probab=80.19  E-value=81  Score=33.04  Aligned_cols=103  Identities=16%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             CeEEEEEEEe--cCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccc
Q 015010          109 DVFLLKFWCF--QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTL  186 (414)
Q Consensus       109 ~~~~i~v~~~--~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~  186 (414)
                      +.+.|+|.+.  .+.+|+.++|..+|+++|++|.  .+.++.  ..+ .|.|...      ..+.+++.+.|+..+..  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~si-s~~v~~~------~~~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTI-THYLWGS------LKTLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEE-EEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence            5667777651  2789999999999999999998  344422  222 3555431      11223332333322210  


Q ss_pred             ccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecC--cccHHHHH
Q 015010          187 ISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQD--HKGLIYDM  264 (414)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D--rpGLL~~i  264 (414)
                                                                      ..+..     .+...|.|.+..  +||+.+++
T Consensus       395 ------------------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~  421 (475)
T PRK09181        395 ------------------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKA  421 (475)
T ss_pred             ------------------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHH
Confidence                                                            01110     234567777654  89999999


Q ss_pred             HHHHHhCCceEEe
Q 015010          265 MRTLKDYNTQVSY  277 (414)
Q Consensus       265 ~~~L~~~~l~I~~  277 (414)
                      ..+|.+.|+||..
T Consensus       422 f~aL~~~~Ini~~  434 (475)
T PRK09181        422 VQALAEAGINVLA  434 (475)
T ss_pred             HHHHHHCCCCeEE
Confidence            9999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1u8s_A	192	Glycine cleavage system transcriptional repressor,	2e-07
2nyi_A	195	Unknown protein; protein structure initiative, PSI	6e-05

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 22  VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRL 81
           VIT    D+ G+  ++ R++   G +I    ++  GK   L+  + G   +  + ++  L
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-SPSNITRVETTL 66

Query: 82  LEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKR 141
             +   +   + +      + Q         +      D+ GL    T+   + ++ +  
Sbjct: 67  PLLGQQHDLITMMKRTSPHDHQTHAYT--VEVYVES-DDKLGLTEKFTQFFAQRQIGMAS 123

Query: 142 VKVSTTPDGRVM---DLFFIT 159
           +   T    ++    + F I 
Sbjct: 124 LSAQTISKDKLHSEQNQFHIA 144

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 22  VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRL 81
           V++V   D+ G+  D    +     ++    ++  G    ++  +V        L+++ L
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIV-LVSLNAKDGKLIQSAL 65

Query: 82  LEVCPSYFSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKR 141
               P  F  S   +  +  +        + L      D +G++  VT VL +    I  
Sbjct: 66  ESALPG-FQISTRRASSVAERHVSPDTREYELYVEG-PDSEGIVEAVTAVLAKKGANIVE 123

Query: 142 VKVSTTPDGRVMDLFF 157
           ++  T P        F
Sbjct: 124 LETETLPAPFAGFTLF 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.69
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.67
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.63
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.6
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.69
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.54
2f06_A	144	Conserved hypothetical protein; structural genomic	98.07
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.06
2f06_A	144	Conserved hypothetical protein; structural genomic	98.02
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.8
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.76
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.72
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.38
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.3
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.29
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.29
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.27
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.22
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.19
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.17
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.14
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.03
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.0
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.98
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.97
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.93
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.78
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.74
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.73
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.66
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.63
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.61
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.37
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.37
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.27
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.14
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.08
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.05
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.97
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.88
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.76
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.68
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.47
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.71
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.52
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.28
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.26
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	92.78
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.68
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.61
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	90.54
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.13
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.64
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.31
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	89.27
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	88.51
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.19
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.74
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	87.41
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.26
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	83.3
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	83.06
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	82.83

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.69  E-value=1.3e-16  Score=145.03  Aligned_cols=158  Identities=13%  Similarity=0.115  Sum_probs=108.8

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISC  189 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~  189 (414)
                      .++|+|+| +||||||++|+++|+++||||++|++++..+++++ .|.|..+..  ..+.++++|++.|..++.+..   
T Consensus         5 ~~~ltv~~-~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~---   77 (195)
T 2nyi_A            5 SFVVSVAG-SDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTR---   77 (195)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEE---
T ss_pred             EEEEEEEe-CCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcC---
Confidence            67999999 99999999999999999999999999996766666 777865321  123355666555554332200   


Q ss_pred             cccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHH
Q 015010          190 EIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLK  269 (414)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~  269 (414)
                            ...            .+.            .       .+    . ......++|+|.|+|||||+++|+++|+
T Consensus        78 ------~~~------------~~~------------~-------~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La  115 (195)
T 2nyi_A           78 ------RAS------------SVA------------E-------RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLA  115 (195)
T ss_dssp             ------ECC------------CC---------------------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHH
T ss_pred             ------CeE------------EEE------------e-------CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHH
Confidence                  000            000            0       00    0 2334568999999999999999999999


Q ss_pred             hCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          270 DYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       270 ~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ++|+||.+++..+....++..+.|++. ..+.+  ++.. +.|++.|....
T Consensus       116 ~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          116 KKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             HTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred             HcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence            999999999998543124456888874 22222  2334 77888876544

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.67  E-value=4.6e-16  Score=141.45  Aligned_cols=153  Identities=15%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC-cce
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP-LRV  325 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~-~~~  325 (414)
                      .++|+|+|+|||||+++|+++|+++|+||.+|++++. .|..+. .|.+...+.  ..+.+++.|++.|...+... ...
T Consensus         5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~-~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL-GGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE-CCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            4689999999999999999999999999999999964 554555 666652221  22334566666665433211 001


Q ss_pred             eeecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeC--ceeeEEEEEEEEcCCCCCCCchHHH
Q 015010          326 AVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIH--DREWEVYRILLDEADGNLEPRNKIE  403 (414)
Q Consensus       326 ~~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g--~~~~~~d~Fyv~d~~g~~l~~~~~~  403 (414)
                      .+.. .....-.-..+|+|.|.|||||+++||.+|+++|+||..+++.|  .+  ++  ..+.||++...+.+  +... 
T Consensus        81 ~~~~-~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t--~~~~~~--~~~~F~m~~~~~~~--~~~~-  152 (195)
T 2nyi_A           81 SVAE-RHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETET--LPAPFA--GFTLFRMGSRVAFP--FPLY-  152 (195)
T ss_dssp             CC-----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--EECSST--TCEEEEEEEEEEEE--GGGH-
T ss_pred             EEEe-CCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeee--cccccC--CCCeEEEEEEEEcC--CCcc-
Confidence            0100 00000112358999999999999999999999999999999999  77  66  78999998765543  1223 


Q ss_pred             HHHHHHHc
Q 015010          404 DLVRKILM  411 (414)
Q Consensus       404 ~~i~~~L~  411 (414)
                      +.|+++|.
T Consensus       153 ~~l~~~l~  160 (195)
T 2nyi_A          153 QEVVTALS  160 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555553

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.63  E-value=9.8e-15  Score=132.21  Aligned_cols=156  Identities=9%  Similarity=0.057  Sum_probs=108.2

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISC  189 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~  189 (414)
                      .+.|+|.| +||||++++|+++|+++|+||.++++++..+.+++ .|.|..+      ...+++|++.|..++....   
T Consensus         6 ~~~itv~~-~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~-~~~v~~~------~~~~~~l~~~L~~~~~~~~---   74 (192)
T 1u8s_A            6 HLVITAVG-TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTL-LMLISGS------PSNITRVETTLPLLGQQHD---   74 (192)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEEC------HHHHHHHHHHHHHHHHHHT---
T ss_pred             EEEEEEEc-CCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEE-EEEEecC------CCCHHHHHHHHHHHHHhcC---
Confidence            57899999 99999999999999999999999999995544444 7878652      3467888888887663210   


Q ss_pred             cccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHH
Q 015010          190 EIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLK  269 (414)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~  269 (414)
                            ...            .+. ..         .      .++     +..+...++|+|.|+||||++++|+.+|+
T Consensus        75 ------~~~------------~~~-~~---------~------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~  115 (192)
T 1u8s_A           75 ------LIT------------MMK-RT---------S------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFA  115 (192)
T ss_dssp             ------CEE------------EEE-EE---------C------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHH
T ss_pred             ------CEE------------EEE-eC---------C------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHH
Confidence                  011            011 00         0      000     23344568999999999999999999999


Q ss_pred             hCCceEEeEEEEEeeCC----CEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010          270 DYNTQVSYGRFFAKPRG----NCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       270 ~~~l~I~~A~I~t~t~g----~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ++|+||.+++..|  .+    ++..+.|++. .-+.+  ++...+.|++.|.+..
T Consensus       116 ~~~~nI~~~~~~t--~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A          116 QRQIGMASLSAQT--ISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALC  166 (192)
T ss_dssp             HTTCCEEEEEEEE--EC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHH
T ss_pred             HcCCcHHHhhhhc--ccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence            9999999988884  44    2467888774 22211  1224567878776544

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.60  E-value=2.5e-14  Score=129.49  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=98.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-Ccce
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR-PLRV  325 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-~~~~  325 (414)
                      ..+|+|+|+|||||+++|+++|+++|+||.++++++ +.| ...-.|.+...      ....+.|++.|.+.... ....
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~~-~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGK-EFTLLMLISGS------PSNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETT-EEEEEEEEEEC------HHHHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cCC-ceEEEEEEecC------CCCHHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999999986 355 43336666421      24567888888776531 1111


Q ss_pred             eee--cCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCc----eeeEEEEEEEEcCCC
Q 015010          326 AVV--NRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHD----REWEVYRILLDEADG  394 (414)
Q Consensus       326 ~~~--~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~----~~~~~d~Fyv~d~~g  394 (414)
                      .+.  .+..+..-....+|+|.+.||||++++|+.+|+++|+||..++..|  .++    +  ..+.||++..-+
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t--~~~~~~~~--~~~~F~~~~~~~  148 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT--ISKDKLHS--EQNQFHIAISAR  148 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE--EC----------CEEEEEEEEE
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc--ccCCccCC--CCCEEEEEEEEe
Confidence            111  1111111123458999999999999999999999999999999999  773    5  788999977543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.69  E-value=1.7e-06  Score=86.92  Aligned_cols=125  Identities=17%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS  188 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~  188 (414)
                      ..+.|++.| +||||+.+.|+++|+++||||.+.+.++ .+|+..-...+..+..    ....+.|++.|.......   
T Consensus        11 ~~~~lt~~g-~Dr~Giv~~vs~~l~~~~~nI~d~~q~~-~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~---   81 (415)
T 3p96_A           11 VSVLITVTG-VDQPGVTATLFEVLSRHGVELLNVEQVV-IRHRLTLGVLVCCPAD----VADGPALRHDVEAAIRKV---   81 (415)
T ss_dssp             EEEEEEEEE-ECCTTHHHHHHHHHTTTTCEEEEEEEEE-ETTEEEEEEEEEECHH----HHTSHHHHHHHHHHHHHT---
T ss_pred             CeEEEEEEc-CCCCCHHHHHHHHHHHCCCCEEEeeeEE-ECCEeEEEEEEEecCC----cCCHHHHHHHHHHHHHHc---
Confidence            468999999 9999999999999999999999999998 5666544444443110    112366777776643321   


Q ss_pred             ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecC-cccHHHHHHHH
Q 015010          189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQD-HKGLIYDMMRT  267 (414)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D-rpGLL~~i~~~  267 (414)
                            +-++            +++..          ..    ..       ......+..+++.++| +||++.+|+.+
T Consensus        82 ------~~~~------------~~~~~----------~~----~~-------~~~~~~~~~~~llg~~~~~~~~~~i~~~  122 (415)
T 3p96_A           82 ------GLDV------------SIERS----------DD----VP-------IIREPSTHTIFVLGRPITAAAFGAVARE  122 (415)
T ss_dssp             ------TCEE------------EEEEC----------SS----SC-------SSCCCCSEEEEEEESSCCHHHHHHHHHH
T ss_pred             ------CeEE------------EEEEC----------Cc----cc-------ccCCCCcEEEEEEeCCCCHHHHHHHHHH
Confidence                  0111            00000          00    00       0123456789999999 99999999999


Q ss_pred             HHhCCceEEeEEEE
Q 015010          268 LKDYNTQVSYGRFF  281 (414)
Q Consensus       268 L~~~~l~I~~A~I~  281 (414)
                      ++++|+||...+-.
T Consensus       123 l~~~~~Ni~~l~~~  136 (415)
T 3p96_A          123 VAALGVNIDLIRGV  136 (415)
T ss_dssp             HHHTTCEEEEEEEE
T ss_pred             HHHcCCCccceeec
Confidence            99999999986655

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.54  E-value=9.2e-07  Score=88.80  Aligned_cols=154  Identities=12%  Similarity=0.044  Sum_probs=102.7

Q ss_pred             eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCC-CCHHHHHHHHHHhCCCCCcCCcccccc
Q 015010           20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT-TRWSLLKNRLLEVCPSYFSTSRIYSYR   98 (414)
Q Consensus        20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g-~~~~~l~~~l~~~~~~~~~~~~~~~~~   98 (414)
                      ..++++.||||+|+.+.++++|+++|.+|.+..-+..+|+|.-...+.-+.. .+.+.|+..|..++....-.-......
T Consensus        12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~   91 (415)
T 3p96_A           12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIERSD   91 (415)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEEECC
Confidence            4689999999999999999999999999999998888888766655543322 133456666665432210000000000


Q ss_pred             cccccCCCCCCeEEEEEEEecC-CcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHH
Q 015010           99 LENQQQPKPPDVFLLKFWCFQD-RKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHH  177 (414)
Q Consensus        99 ~~~~~~~~~~~~~~i~v~~~~D-r~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~  177 (414)
                      ...  ......+..+++.+ .+ ++|++.+|+.+++.+|.||.+.+..+......++ |.|..+.      ...+.+++.
T Consensus        92 ~~~--~~~~~~~~~~~llg-~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~-~~v~~~~------~~~~~l~~~  161 (415)
T 3p96_A           92 DVP--IIREPSTHTIFVLG-RPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLE-LRVSVPP------GADEALRTA  161 (415)
T ss_dssp             SSC--SSCCCCSEEEEEEE-SSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEE-EEEECCT------TCHHHHHHH
T ss_pred             ccc--ccCCCCcEEEEEEe-CCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEE-EEeeCCC------CCHHHHHHH
Confidence            000  11234588999999 99 9999999999999999999988887733344443 6665421      223556666


Q ss_pred             HHHHHc
Q 015010          178 LEAVLG  183 (414)
Q Consensus       178 L~~~l~  183 (414)
                      +.+.+.
T Consensus       162 l~~l~~  167 (415)
T 3p96_A          162 LNRVSS  167 (415)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            665543

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.07  E-value=0.00038  Score=59.14  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=78.6

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEE-e-cCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCcccccc
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLS-K-DGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYR   98 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-t-dg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~   98 (414)
                      ..++|..||+||.++++.+.|++.|.+|..-.++ + |.|  +-.|.+     .+.+..+..|....-.           
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~--~~~~~~-----~d~~~a~~~L~~~G~~-----------   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG--ILRGIV-----SDPDKAYKALKDNHFA-----------   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE--EEEEEE-----SCHHHHHHHHHHTTCC-----------
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC--EEEEEe-----CCHHHHHHHHHHcCCe-----------
Confidence            4688899999999999999999999999887665 3 433  223433     3556666666643210           


Q ss_pred             cccccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEE
Q 015010           99 LENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFI  158 (414)
Q Consensus        99 ~~~~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V  158 (414)
                      ..        ....+.+.. +|+||.+++++++|+++|+||.....+. .++....+|.+
T Consensus        69 v~--------~~svv~v~~-~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~  118 (144)
T 2f06_A           69 VN--------ITDVVGISC-PNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP  118 (144)
T ss_dssp             EE--------EEEEEEEEE-ESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred             Ee--------eeeEEEEEe-CCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence            00        124577788 9999999999999999999998766663 35555555555

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.06  E-value=1.9e-05  Score=61.64  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      .+.|++.+ +||||++++|+++|+++|+||.+....+. ++.+.-.+.+.-+     +...+++|.+.|++...
T Consensus         5 ~~~l~v~~-~DrpGila~vt~~la~~~~NI~~i~~~~~-~~~~~~~i~v~~~-----~~~~l~~l~~~L~~~~~   71 (91)
T 1zpv_A            5 KAIITVVG-KDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSD-----EKQDFTYLRNEFEAFGQ   71 (91)
T ss_dssp             EEEEEEEE-SCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEES-----SCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeEEE-cCEEEEEEEEEeC-----CCCCHHHHHHHHHHHHH
Confidence            57899999 99999999999999999999999999984 4765555656432     12245777777776543

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.02  E-value=0.00027  Score=60.04  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceee
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAV  327 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~  327 (414)
                      ..++|..+|+||.++++++.|++.|+||..-.+..  ..+..  ++.+.     ..+++   ..++.|++.   ...   
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~--~~~~~--~~~~~-----~~d~~---~a~~~L~~~---G~~---   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADFG--ILRGI-----VSDPD---KAYKALKDN---HFA---   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSCE--EEEEE-----ESCHH---HHHHHHHHT---TCC---
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe--cCCCC--EEEEE-----eCCHH---HHHHHHHHc---CCe---
Confidence            46888899999999999999999999999744331  21111  12222     12333   333444331   110   


Q ss_pred             ecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEe
Q 015010          328 VNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIG  373 (414)
Q Consensus       328 ~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~  373 (414)
                              +.....+-+...|+||.+++|+++|++.|+||.+.-..
T Consensus        69 --------v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           69 --------VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             --------EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             --------EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence                    11123677778899999999999999999999766555

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.80  E-value=0.00014  Score=56.51  Aligned_cols=66  Identities=20%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhC
Q 015010           20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVC   85 (414)
Q Consensus        20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~   85 (414)
                      ...++|.|+||||++++++++|+++|.+|.....++++|.+.-.+.+.-+...+.+.|...|..++
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467999999999999999999999999999999987668888888775444445566666676554

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.76  E-value=0.00014  Score=55.91  Aligned_cols=63  Identities=14%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE  179 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~  179 (414)
                      .+.|.+.+ +||||+|++|+++|++.|+||.+..+.+. ++.+...|.+..     .+...++++.+.|+
T Consensus         5 ~~~l~v~~-~Dr~G~L~~I~~~la~~~inI~~i~~~~~-~~~~~~~i~v~~-----~~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVG-EDKNGMTNQITGVISKFDTNIRTIVLNAK-DGIFTCNLMIFV-----KNTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHTTSSSCEEEEEEEEC-SSEEEEEEEEEE-----SSHHHHHHHHHHHT
T ss_pred             EEEEEEEE-ECCCcHHHHHHHHHHHCCCCeEEEEEEEc-CCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence            46789999 99999999999999999999999999884 445555555543     23444455544443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.72  E-value=0.00014  Score=55.91  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL  315 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L  315 (414)
                      .+.+.|.++||||+|++|+.+|++.|+||.+..+.+  .++.+...|.+..     .+.+.++++.+.|
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~--~~~~~~~~i~v~~-----~~~~~l~~l~~~L   66 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA--KDGIFTCNLMIFV-----KNTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE--CSSEEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE--cCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence            357899999999999999999999999999977763  3335555555541     2344555555544

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.38  E-value=0.00084  Score=63.93  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe-CCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST-TPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T-~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..+.|++.| +||||+.++|++.|+++|+||.+.+.++ ...|++.-...+.-+..    ....++|++.|....
T Consensus         5 ~~~iLtv~g-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~----~~~~~~L~~~f~~la   74 (288)
T 3obi_A            5 HQYVLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK----VIPLASLRTGFGVIA   74 (288)
T ss_dssp             CEEEEEEEE-ECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC----CCCHHHHHHHHHHHH
T ss_pred             CeEEEEEEC-CCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC----CCCHHHHHHHHHHHH
Confidence            357899999 9999999999999999999999999984 24666544444432211    113466777776543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.30  E-value=0.00096  Score=63.90  Aligned_cols=69  Identities=16%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..+.|++.| +||||+.++|++.|+++|+||.+++.++. ..|++.-...+..+..    ....++|++.|....
T Consensus        21 ~~~iLtv~c-~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~----~~~~~~L~~~l~~la   90 (302)
T 3o1l_A           21 RTFRLVIAC-PDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL----PFDLDGFREAFTPIA   90 (302)
T ss_dssp             CEEEEEEEE-ECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS----SSCHHHHHHHHHHHH
T ss_pred             ceEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC----CCCHHHHHHHHHHHH
Confidence            468999999 99999999999999999999999999973 2566544444432211    113466777776543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.29  E-value=0.0011  Score=63.08  Aligned_cols=67  Identities=13%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe-CCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST-TPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T-~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..+.|++.| +||||+.++|++.|+++|+||.+.+.++ ...|++.-...+..+.      ...++|++.|....
T Consensus         6 ~~~vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~------~~~~~L~~~f~~la   73 (287)
T 3nrb_A            6 NQYVLSLAC-QDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV------AGVNDFNSAFGKVV   73 (287)
T ss_dssp             TEEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---------CHHHHHHHHHH
T ss_pred             CeEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC------CCHHHHHHHHHHHH
Confidence            468999999 9999999999999999999999999984 2456554334343221      12346766666543

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.29  E-value=0.0036  Score=54.56  Aligned_cols=108  Identities=19%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             CeEEEEEEe-cCcccHHHHHHHHHHhCCceEEeEEEEEee-CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 015010          246 SHTLIQILG-QDHKGLIYDMMRTLKDYNTQVSYGRFFAKP-RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPL  323 (414)
Q Consensus       246 ~~t~v~V~~-~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t-~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~  323 (414)
                      +.+.|+|.. +|+||.++++..+|+++|+||..  |.+.. .++...=.|++..        ...++..+.|++ +..++
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~--i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l   92 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDM--IIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI   92 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCC--EEEC----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEE--EEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc
Confidence            456788884 99999999999999999999986  43211 1122333466642        112333344443 32222


Q ss_pred             ceeeecCCCCceeee---eeeEEEEeCC---ccchHHHHHHHHHhCCceEEEEEEec
Q 015010          324 RVAVVNRGPDAELLV---ANPVELSGRG---RPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       324 ~~~~~~~~~~~~v~~---~~~lev~~~D---RpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      ..        ..+..   -..+.|.+.+   +||+++++..+|.+.|++|..  |+|
T Consensus        93 ~~--------~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--ist  139 (167)
T 2re1_A           93 GA--------ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--IST  139 (167)
T ss_dssp             TC--------SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             CC--------ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEc
Confidence            11        11111   1378888886   999999999999999999988  445

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.27  E-value=0.0011  Score=57.65  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ...|.|.+ .||||+|++|+++|++.|+||.+..+.++.+ +...-+|.|..      +...+++|.++|.+..
T Consensus         3 ~~~IsV~v-~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~------d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLL-ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEE-eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec------cHHHHHHHHHHHcCCC
Confidence            35789999 9999999999999999999999999987564 66665677763      3556777777777643

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.22  E-value=0.098  Score=54.76  Aligned_cols=273  Identities=21%  Similarity=0.248  Sum_probs=149.5

Q ss_pred             EEEE-eCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCccccccc
Q 015010           22 VITV-NCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRL   99 (414)
Q Consensus        22 ~v~v-~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~   99 (414)
                      .|++ ..++.+|.+.++-+.|++++++|---.-+ +.+|-.-..|.|....   .......++++............+ .
T Consensus       272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~---~~~a~~~l~~~~~el~~~~~~~~~-~  347 (600)
T 3l76_A          272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDL---LNTAEAVTSAIAPALRSYPEADQE-A  347 (600)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGG---HHHHHHHHHHHGGGGSSSTTCSSS-S
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHH---HHHHHHHHHHHHHHhhccccccCc-c
Confidence            4444 34789999999999999999998333222 2444445566664331   112223333322111000000000 0


Q ss_pred             ccccCCCCCCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHH
Q 015010          100 ENQQQPKPPDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIH  176 (414)
Q Consensus       100 ~~~~~~~~~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~  176 (414)
                      .+   .-..+...|.+.+ .   .+||..+++..+|++.|+||.--.  |+  ...+ .|.|..        +..++..+
T Consensus       348 ~v---~~~~~~a~VsvVG-~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~I-s~vI~~--------~d~~~Av~  410 (600)
T 3l76_A          348 EI---IVEKGIAKIAIAG-AGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKV-SCVIDQ--------RDADRAIA  410 (600)
T ss_dssp             EE---EEECSEEEEEEEC-GGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEE-EEEEEG--------GGHHHHHH
T ss_pred             ee---EecCCeEEEEEEC-CCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEE-EEEEcH--------HHHHHHHH
Confidence            11   0123578999998 6   689999999999999999997543  42  3333 355543        12334445


Q ss_pred             HHHHHHccccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEE-ec
Q 015010          177 HLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQIL-GQ  255 (414)
Q Consensus       177 ~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~-~~  255 (414)
                      .|.+.+....     .   +           .+.. ...+             ..+.-+-|..+.    +.+.|+|. .+
T Consensus       411 aLh~~f~~~~-----t---~-----------~~~~-~~~~-------------~~~~v~Gia~~~----~~a~i~i~~~~  453 (600)
T 3l76_A          411 ALSNAFGVTL-----S---P-----------PKNQ-TDTS-------------HLPAVRGVALDQ----DQAQIAIRHVP  453 (600)
T ss_dssp             HHHHHTTCCB-----C---C-----------CCCC-CC----------------CCSCCEEEEEC----SEEEEEEEEEE
T ss_pred             HHHHhhcccC-----C---C-----------cccc-cccc-------------ccCceEEEEeeC----CEEEEEEecCC
Confidence            5555553210     0   0           0000 0000             001112344432    44566664 58


Q ss_pred             CcccHHHHHHHHHHhCCceEEeEEEEEe--eC---CC-EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeec
Q 015010          256 DHKGLIYDMMRTLKDYNTQVSYGRFFAK--PR---GN-CEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVN  329 (414)
Q Consensus       256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~--t~---g~-~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~  329 (414)
                      |+||+.++|-..|++.|+||.-  |..+  ..   |. ...=.|.+.        .+..++..+.|++ +..++..    
T Consensus       454 ~~~g~~~~if~~La~~~I~vDm--I~q~~~~~~~~g~~~~~isftv~--------~~d~~~a~~~l~~-~~~~~~~----  518 (600)
T 3l76_A          454 DRPGMAAQLFTALAEANISVDM--IIQSQRCRINQGTPCRDIAFMVA--------EGDSSQAEAILQP-LIKDWLD----  518 (600)
T ss_dssp             SSTTHHHHHHHHHHHTTCCCCE--EEEEEECCCSSSSCEEEEEEEEE--------HHHHHHHHHHHHH-HTTTSTT----
T ss_pred             CCccHHHHHHHHHHHcCCcEEE--EEecccccccCCCccceEEEEEe--------HHHHHHHHHHHHH-HHHhcCC----
Confidence            9999999999999999999964  3211  11   21 223346664        2233344444433 3222111    


Q ss_pred             CCCCceeeee---eeEEEEe---CCccchHHHHHHHHHhCCceEEEEE
Q 015010          330 RGPDAELLVA---NPVELSG---RGRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       330 ~~~~~~v~~~---~~lev~~---~DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                          .++.++   .+|.|.|   ..+||+.+.+-++|.+.|+||..--
T Consensus       519 ----~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          519 ----AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             ----CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             ----ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence                112221   3777776   4899999999999999999998644

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.19  E-value=0.0012  Score=63.05  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCC-HHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHT-RKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~-~~~~~~i~~~L~~~l  182 (414)
                      ..+.|++.| +||||+.++|++.|+++|+||.+.+.++- ..|++.-...+..+.   ++ ....++|++.|....
T Consensus         9 ~~~vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~~~~~L~~~f~~la   80 (292)
T 3lou_A            9 HQFVLTLSC-PSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD---DADALRVDALRREFEPIA   80 (292)
T ss_dssp             CEEEEEEEE-ESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-------CCHHHHHHHHHHHH
T ss_pred             CcEEEEEEc-CCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccC---cccCCCHHHHHHHHHHHH
Confidence            468999999 99999999999999999999999999852 356544333333220   01 123566777776543

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.17  E-value=0.0033  Score=54.79  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             CeEEEEEEe-cCcccHHHHHHHHHHhCCceEEeEEEEEeeC---CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          246 SHTLIQILG-QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPR---GNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       246 ~~t~v~V~~-~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~---g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      +.+.|+|.+ +|+||.++++..+|++.|+||..  |.+...   .+...=.|.+..+     +.++..++.+.+...+.-
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~~-----d~~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKKD-----FAQEALEALEPVLAEIGG   87 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEGG-----GHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEehH-----HHHHHHHHHHHHHHHhCC
Confidence            556777776 89999999999999999999986  542111   1133345677521     122223333334444432


Q ss_pred             CcceeeecCCCCceeeeeeeEEEEeCC---ccchHHHHHHHHHhCCceEEEE
Q 015010          322 PLRVAVVNRGPDAELLVANPVELSGRG---RPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~~~~lev~~~D---RpGLL~dIt~~l~~~gl~I~~A  370 (414)
                        .+.. ..+       -.++.|.|.+   +||+++++.++|.+.|+||..-
T Consensus        88 --~v~~-~~~-------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 --EAIL-RPD-------IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             --EEEE-ECS-------EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             --cEEE-eCC-------EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence              2211 111       1378888876   9999999999999999999543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.14  E-value=0.0015  Score=62.03  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG  183 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~  183 (414)
                      ..+.|++.| +||||+.++|++.|+++|+||.+.+.++- ..|++.-...+..+.     ....++|++.|.....
T Consensus         7 ~~~vLtv~c-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-----~~~~~~L~~~f~~la~   76 (286)
T 3n0v_A            7 DTWILTADC-PSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-----DFDEAGFRAGLAERSE   76 (286)
T ss_dssp             CCEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-----SCCHHHHHHHHHHHHG
T ss_pred             CcEEEEEEe-CCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-----CCCHHHHHHHHHHHHH
Confidence            357899999 99999999999999999999999999852 356544344443321     1235677777776543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.03  E-value=0.0023  Score=55.71  Aligned_cols=66  Identities=14%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ...|.+.. .|+||+|++|+++|++.|+||.+..+..+.+ +..--+|.|..      +...+++|.++|.+..
T Consensus         4 ~~~IsV~v-eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLM-ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEE-ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEE-eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCCC
Confidence            36789999 9999999999999999999999999986564 66665667764      3556677777777644

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.00  E-value=0.0026  Score=55.38  Aligned_cols=66  Identities=8%  Similarity=0.088  Sum_probs=50.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.|...|+||+|++|++.|++.|+||.+..+..+.+.+...=+|.++  +    ++..+++|.+.|.+..
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~----d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G----DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--c----cHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999998776433334555556665  2    2567788888887644

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.98  E-value=0.012  Score=51.76  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             CeEEEEE-EecCcccHHHHHHHHHHhCCceEEeEEEEEeeC---CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          246 SHTLIQI-LGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPR---GNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       246 ~~t~v~V-~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~---g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      +.+.|+| ..+|+||.++++...|++.|+||..  |.+++.   ++...=.|.+..        +..++..+.|++ +..
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~--i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~   82 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQV   82 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCE--EEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTT
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEE--EEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHH
Confidence            4567777 3699999999999999999999985  432211   112222366641        222333344433 222


Q ss_pred             CcceeeecCCCCceeeee---eeEEEEeC---CccchHHHHHHHHHhCCceEEEEEEec
Q 015010          322 PLRVAVVNRGPDAELLVA---NPVELSGR---GRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~~---~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      +...        ..+.+.   .+|.|.|.   ++||+++++.++|.+.|+||..  |+|
T Consensus        83 ~~~~--------~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--ist  131 (178)
T 2dtj_A           83 QGNW--------TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--IST  131 (178)
T ss_dssp             TTTC--------SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             hcCC--------CeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEc
Confidence            2111        112221   36677765   8999999999999999999988  445

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.97  E-value=0.0091  Score=51.93  Aligned_cols=109  Identities=16%  Similarity=0.249  Sum_probs=72.1

Q ss_pred             CeEEEEEE-EecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010          109 DVFLLKFW-CFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI  187 (414)
Q Consensus       109 ~~~~i~v~-~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~  187 (414)
                      +...|+|. . +|+||.+++|..+|+++|+||.--....+.+|..--.|.|...     +.   ++..+.|++...    
T Consensus        24 ~~~~i~v~~~-~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-----~~---~~a~~~l~~~~~----   90 (167)
T 2re1_A           24 NQARINVRGV-PDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-----DY---KQTLEILSERQD----   90 (167)
T ss_dssp             CCEEEEEEEE-ECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-----GH---HHHHHHHHHSST----
T ss_pred             CEEEEEEecC-CCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-----HH---HHHHHHHHHHHH----
Confidence            57888888 6 9999999999999999999998655443334533335766531     11   223233333111    


Q ss_pred             cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecC---cccHHHHH
Q 015010          188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQD---HKGLIYDM  264 (414)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D---rpGLL~~i  264 (414)
                               +.                                 .. ..+.+.    .+.+.+.|.+.+   +||+++++
T Consensus        91 ---------~l---------------------------------~~-~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i  123 (167)
T 2re1_A           91 ---------SI---------------------------------GA-ASIDGD----DTVCKVSAVGLGMRSHVGVAAKI  123 (167)
T ss_dssp             ---------TT---------------------------------TC-SEEEEE----SSEEEEEEECSSCTTCCCHHHHH
T ss_pred             ---------Hc---------------------------------CC-ceEEec----CCEEEEEEECCCcCCCcCHHHHH
Confidence                     00                                 00 012222    356789999987   99999999


Q ss_pred             HHHHHhCCceEEe
Q 015010          265 MRTLKDYNTQVSY  277 (414)
Q Consensus       265 ~~~L~~~~l~I~~  277 (414)
                      ..+|++.|+||..
T Consensus       124 ~~aL~~~~InI~~  136 (167)
T 2re1_A          124 FRTLAEEGINIQM  136 (167)
T ss_dssp             HHHHHHTTCCCCE
T ss_pred             HHHHHHCCCcEEE
Confidence            9999999999997

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.93  E-value=0.041  Score=52.21  Aligned_cols=111  Identities=11%  Similarity=0.146  Sum_probs=65.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVA  326 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~  326 (414)
                      ..+++|.|+||||+.++|+++|+++|+||.+.+-++....+...-...++......    ..+.|++.|.. +..+..++
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~----~~~~L~~~f~~-la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVI----PLASLRTGFGV-IAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCC----CHHHHHHHHHH-HHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCC----CHHHHHHHHHH-HHHHcCCE
Confidence            36899999999999999999999999999997776433333332222223111111    24567776643 22222221


Q ss_pred             --eecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEE
Q 015010          327 --VVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIF  368 (414)
Q Consensus       327 --~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~  368 (414)
                        +.....+.      .|=|....+---|.+|-.+.++-.+++.
T Consensus        81 ~~l~~~~~~~------ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  118 (288)
T 3obi_A           81 WHMRDRETRR------KVMLLVSQSDHCLADILYRWRVGDLHMI  118 (288)
T ss_dssp             EEEEETTSCE------EEEEEECSCCHHHHHHHHHHHTTSSCEE
T ss_pred             EEeeccCCCc------EEEEEEcCCCCCHHHHHHHHHCCCCCeE
Confidence              22211111      3444444445577777777776666543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.78  E-value=0.051  Score=51.85  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA  282 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t  282 (414)
                      ..+++|.|+||||+.++|++.|+++|+||.+..-++
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~   57 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHS   57 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence            358999999999999999999999999999977764

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.74  E-value=0.0041  Score=54.16  Aligned_cols=66  Identities=8%  Similarity=0.101  Sum_probs=50.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.|...|+||+|++|++.|++.|+||.+..+..+.+.+...=+|.++  +    ++..+++|.+.|.+..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~----d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--G----PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--c----cHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999997776433334555556664  1    2466788888887654

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.73  E-value=0.052  Score=51.42  Aligned_cols=36  Identities=14%  Similarity=0.035  Sum_probs=32.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA  282 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t  282 (414)
                      ..+++|.|+||||+.++|++.|+++|+||.+.+-++
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~   43 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD   43 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec
Confidence            368999999999999999999999999999977664

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.66  E-value=0.091  Score=49.89  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=33.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA  282 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t  282 (414)
                      ..++++.|+||||+.++|+++|+++|+||.+.+-++
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            468999999999999999999999999999977764

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.63  E-value=0.07  Score=50.55  Aligned_cols=107  Identities=8%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVA  326 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~  326 (414)
                      ..+++|.|+||||+.++|++.|+++|+||.+..-++....+...-  .+..+....    ..+.|++.|.. +..+..++
T Consensus         7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~~----~~~~L~~~f~~-la~~~~m~   79 (287)
T 3nrb_A            7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM--RVSVEIPVA----GVNDFNSAFGK-VVEKYNAE   79 (287)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE--EEEEECCC-------CHHHHHHHH-HHGGGTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE--EEEEEcCCC----CHHHHHHHHHH-HHHHcCCe
Confidence            468999999999999999999999999999987764333333221  122111111    13367676643 33333222


Q ss_pred             --eecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCce
Q 015010          327 --VVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSIS  366 (414)
Q Consensus       327 --~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~  366 (414)
                        +.....+.      .|=|....+---|.++-...++-.++
T Consensus        80 ~~l~~~~~~~------ri~vl~Sg~g~nl~~ll~~~~~g~l~  115 (287)
T 3nrb_A           80 WWFRPRTDRK------KVVIMVSKFDHCLGDLLYRHRLGELD  115 (287)
T ss_dssp             EEEEETTCCC------EEEEEECSCCHHHHHHHHHHHHTSSC
T ss_pred             eEeeccCCCc------EEEEEEeCCCcCHHHHHHHHHCCCCC
Confidence              22111111      34444444445777887777766554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.61  E-value=0.14  Score=44.86  Aligned_cols=139  Identities=16%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             CCeEEEEEE-EecCCcchHHHHHHHHHhCCCeEEEEEEEeCC--CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010          108 PDVFLLKFW-CFQDRKGLLHDVTEVLCELELTIKRVKVSTTP--DGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK  184 (414)
Q Consensus       108 ~~~~~i~v~-~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~  184 (414)
                      .+.+.|+|. . +|+||.+++|...|++.|+||.--...+..  ++..--.|.+..        ...++..+.|++... 
T Consensus        13 ~~~~~Itv~~~-~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~~~~-   82 (178)
T 2dtj_A           13 KSEAKVTVLGI-SDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKKLQV-   82 (178)
T ss_dssp             CSEEEEEEEEE-ECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHTTTT-
T ss_pred             CCEEEEEEecC-CCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHHHHH-
Confidence            357888885 6 999999999999999999999865544421  332222366643        122223222222110 


Q ss_pred             ccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHH
Q 015010          185 TLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLI  261 (414)
Q Consensus       185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL  261 (414)
                                  +.                                 .. ..+.+.    .+...|.|.+.   ++||++
T Consensus        83 ------------~~---------------------------------~~-~~v~~~----~~~a~VsvVG~gm~~~~Gv~  112 (178)
T 2dtj_A           83 ------------QG---------------------------------NW-TNVLYD----DQVGKVSLVGAGMKSHPGVT  112 (178)
T ss_dssp             ------------TT---------------------------------TC-SEEEEE----SCEEEEEEEEECCTTCHHHH
T ss_pred             ------------hc---------------------------------CC-CeEEEe----CCeEEEEEEcCCcccCccHH
Confidence                        00                                 00 122232    35677888886   899999


Q ss_pred             HHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       262 ~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      +++..+|++.|+||..  |.++ .-   --.|.|.        ++..++..+.|.+++.
T Consensus       113 arif~aLa~~~InI~~--istS-e~---~Is~vV~--------~~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A          113 AEFMEALRDVNVNIEL--ISTS-EI---RISVLIR--------EDDLDAAARALHEQFQ  157 (178)
T ss_dssp             HHHHHHHHHTTCCCCE--EEEE-TT---EEEEEEE--------GGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEE--EEcC-CC---eEEEEEe--------HHHHHHHHHHHHHHHc
Confidence            9999999999999986  5433 22   2245553        2334445555666664

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.37  E-value=0.26  Score=51.56  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=111.5

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS  188 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~  188 (414)
                      +.+.|++..-+++||.+++|...|+++|+||---......+|..--.|.|...        ..++..+.|++....    
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~--------~~~~a~~~l~~~~~e----  336 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD--------LLNTAEAVTSAIAPA----  336 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG--------GHHHHHHHHHHHGGG----
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH--------HHHHHHHHHHHHHHH----
Confidence            44566665448999999999999999999995322222234544345666542        222332333332111    


Q ss_pred             ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHHHHH
Q 015010          189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIYDMM  265 (414)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~~i~  265 (414)
                               +              ...          +.   ......|.+.    .+...|.|.+.   .+||+.+++.
T Consensus       337 ---------l--------------~~~----------~~---~~~~~~v~~~----~~~a~VsvVG~gm~~~~Gv~a~if  376 (600)
T 3l76_A          337 ---------L--------------RSY----------PE---ADQEAEIIVE----KGIAKIAIAGAGMIGRPGIAAKMF  376 (600)
T ss_dssp             ---------G--------------SSS----------TT---CSSSSEEEEE----CSEEEEEEECGGGTTCTTHHHHHH
T ss_pred             ---------h--------------hcc----------cc---ccCcceeEec----CCeEEEEEECCCcccCccHHHHHH
Confidence                     0              000          00   0001133333    35678999886   6899999999


Q ss_pred             HHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCC-----CCceeeee-
Q 015010          266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRG-----PDAELLVA-  339 (414)
Q Consensus       266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~-----~~~~v~~~-  339 (414)
                      .+|++.++||..  |+++  .  .--.|.++        ++..++..+.|.+.+...........+     .-+-|..+ 
T Consensus       377 ~aL~~~~Ini~~--istS--e--~~Is~vI~--------~~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gia~~~  442 (600)
T 3l76_A          377 KTLADVGVNIEM--ISTS--E--VKVSCVID--------QRDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVALDQ  442 (600)
T ss_dssp             HHHHHTTCCCCE--EEEC--S--SEEEEEEE--------GGGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEEEEEC
T ss_pred             HHHHhCCCcEEE--EecC--C--CEEEEEEc--------HHHHHHHHHHHHHhhcccCCCccccccccccCceEEEEeeC
Confidence            999999999985  5432  2  22345554        223445556666666533110000000     00112221 


Q ss_pred             --eeEEEE-eCCccchHHHHHHHHHhCCceEEEE
Q 015010          340 --NPVELS-GRGRPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       340 --~~lev~-~~DRpGLL~dIt~~l~~~gl~I~~A  370 (414)
                        ..|.|. -.|+||+.++|-..|.+.|+||-.-
T Consensus       443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI  476 (600)
T 3l76_A          443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMI  476 (600)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence              244443 4799999999999999999998543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.37  E-value=0.29  Score=42.92  Aligned_cols=113  Identities=12%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC--CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccc
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP--DGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTL  186 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~  186 (414)
                      +.+.|+|.+-+|+||.+++|..+|++.|+||.--......  +|..--.|.|...     +.   ++..+.|++....  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-----~~---~~a~~~L~~~~~e--   84 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-----VG---PAAVEKLDSLRNE--   84 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-----TH---HHHHHHHHHTHHH--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-----HH---HHHHHHHHHHHHh--
Confidence            5667777654899999999999999999999743332222  4554445777652     12   2222223221110  


Q ss_pred             ccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHHH
Q 015010          187 ISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIYD  263 (414)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~~  263 (414)
                                                   ..                ...|.++    .+...|.|.+.   ++||+.++
T Consensus        85 -----------------------------l~----------------~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~  115 (181)
T 3s1t_A           85 -----------------------------IG----------------FSQLLYD----DHIGKVSLIGAGMRSHPGVTAT  115 (181)
T ss_dssp             -----------------------------HC----------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             -----------------------------cC----------------cceEEEe----CCEEEEEEEecccccCchHHHH
Confidence                                         00                0012222    24567888775   89999999


Q ss_pred             HHHHHHhCCceEEeEEEEE
Q 015010          264 MMRTLKDYNTQVSYGRFFA  282 (414)
Q Consensus       264 i~~~L~~~~l~I~~A~I~t  282 (414)
                      +..+|++.|+||..  |++
T Consensus       116 ~f~aLa~~~InI~~--Ist  132 (181)
T 3s1t_A          116 FCEALAAVGVNIEL--IST  132 (181)
T ss_dssp             HHHHHHHTTCCCCE--EEE
T ss_pred             HHHHHHHCCCcEEE--EEc
Confidence            99999999999996  543

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.27  E-value=0.015  Score=51.60  Aligned_cols=66  Identities=12%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ...|.|.. .|+||.|++|+++|+..|+||.+-.+..+.+ +..--++.|.+.      +...++|.++|.++.
T Consensus        29 ~~~LsVlV-eN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLV-HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEE-CCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            57899999 9999999999999999999999988874455 655555677642      334566666666544

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.14  E-value=0.09  Score=45.47  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC--CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP--DGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      .+...|++.+-+|+||.++++..+|++.|+||.--....+.  .|..--.|.|...     +.   ++..+.|++.... 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-----d~---~~a~~~L~~~~~~-   84 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-----FA---QEALEALEPVLAE-   84 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-----GH---HHHHHHHHHHHHH-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-----HH---HHHHHHHHHHHHH-
Confidence            35788888765899999999999999999999863332211  2333335777541     12   2222333332111 


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecC---cccHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQD---HKGLIY  262 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D---rpGLL~  262 (414)
                                                    .               ..  .+.++    .+...|.|.+.+   +||+++
T Consensus        85 ------------------------------~---------------~~--~v~~~----~~~a~vsvVG~gm~~~~Gv~a  113 (167)
T 2dt9_A           85 ------------------------------I---------------GG--EAILR----PDIAKVSIVGVGLASTPEVPA  113 (167)
T ss_dssp             ------------------------------H---------------CC--EEEEE----CSEEEEEEEESSGGGSTHHHH
T ss_pred             ------------------------------h---------------CC--cEEEe----CCEEEEEEECCCcccCcCHHH
Confidence                                          0               00  12222    356788899876   999999


Q ss_pred             HHHHHHHhCCceEEe
Q 015010          263 DMMRTLKDYNTQVSY  277 (414)
Q Consensus       263 ~i~~~L~~~~l~I~~  277 (414)
                      ++..+|++.|+||..
T Consensus       114 ~~f~aL~~~~InI~~  128 (167)
T 2dt9_A          114 KMFQAVASTGANIEM  128 (167)
T ss_dssp             HHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHCCCCEEE
Confidence            999999999999963

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.08  E-value=0.069  Score=47.02  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             eEEEEE-EecCcccHHHHHHHHHHhCCceEEeEEEEEe-eC--CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          247 HTLIQI-LGQDHKGLIYDMMRTLKDYNTQVSYGRFFAK-PR--GNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       247 ~t~v~V-~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~-t~--g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      .+.|+| .-+|+||.+++|..+|++.|+||..  |... +.  .+...-.|.++.+     +.++..++.+.+.+.+. .
T Consensus        16 ~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~--I~q~~s~~~~g~~~isftv~~~-----~~~~a~~~L~~~~~el~-~   87 (181)
T 3s1t_A           16 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG-F   87 (181)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCC--EEECCCCTTTCEEEEEEEEETT-----THHHHHHHHHHTHHHHC-C
T ss_pred             EEEEEEecCCCCcCHHHHHHHHHHHcCCcEEE--EEecCCcccCCccEEEEEEehh-----HHHHHHHHHHHHHHhcC-c
Confidence            445554 3579999999999999999999985  4321 11  2344556777521     12222333333333332 1


Q ss_pred             cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          323 LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       323 ~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                      ..+.. ..+    +   .+|.|.|.   ++||+.+.+.++|.+.|++|...-
T Consensus        88 ~~v~~-~~~----v---a~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 SQLLY-DDH----I---GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             SEEEE-ESC----E---EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEE-eCC----E---EEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            11110 011    1   25666655   899999999999999999998755

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.05  E-value=0.012  Score=53.12  Aligned_cols=50  Identities=20%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC----CCeEEEEEEEec
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP----DGRVMDLFFITD  160 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~  160 (414)
                      ...|.+.+ .||||+|++|+.+|++++.||...+..+..    ++.+.-.+.+.+
T Consensus         4 ~VtL~I~a-~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            4 LRGLRIIA-ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             CEEEEEEE-ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eEEEEEEE-cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            46899999 999999999999999999999999999955    566554455544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.97  E-value=0.0083  Score=52.08  Aligned_cols=34  Identities=18%  Similarity=0.144  Sum_probs=32.6

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGR  374 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T  374 (414)
                      .|+|.+.||+|||+||+.+|.+.+++|..+.+.+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~   35 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP   35 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence            5899999999999999999999999999999988

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.88  E-value=0.027  Score=50.04  Aligned_cols=66  Identities=8%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.|...|+||.|++|++.|+..|+||.+-.+..+.+.+...=++.++.+      +...++|.+.|.+.+
T Consensus        30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            579999999999999999999999999998666533333344445555421      245667777665543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.76  E-value=0.013  Score=52.91  Aligned_cols=35  Identities=11%  Similarity=-0.036  Sum_probs=29.3

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRY  375 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~  375 (414)
                      .|+|.+.||||+|++|+.+|+++++||......+.
T Consensus         6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~   40 (223)
T 1y7p_A            6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLI   40 (223)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEEC
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEcc
Confidence            78999999999999999999999999999999884

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.68  E-value=0.048  Score=48.86  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             CeEEEEEE-ecCcccHHHHHHHHHHhCCceEEeEEEEEee---CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          246 SHTLIQIL-GQDHKGLIYDMMRTLKDYNTQVSYGRFFAKP---RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       246 ~~t~v~V~-~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t---~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      +.+.|+|. .+|+||+.++|-.+|++.|+||..  |....   ......-.|.+..+     +.++...+.+.+...+..
T Consensus        34 ~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDm--I~Qs~s~~~~~~~~~sftv~~~-----d~~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           34 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCC--EECCCCC--CCEEEEEEEEEGG-----GHHHHHHHHHTTHHHHCC
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHhCcceEE--EeeccccccccceEEEEecchh-----hHHHHHHHHHHHHhhhce
Confidence            45667775 489999999999999999999985  54211   12244455766421     122223333333333321


Q ss_pred             CcceeeecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEE
Q 015010          322 PLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A  370 (414)
                      . .+.. .    ..+..-..+-.-...+||+.+++-.+|.+.|+||..-
T Consensus       107 ~-~v~~-~----~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          107 S-QLLY-D----DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             S-EEEE-E----CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             e-eEEE-e----cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence            1 1100 0    1111112333334579999999999999999999864

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.47  E-value=0.06  Score=46.46  Aligned_cols=60  Identities=15%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      .|+|.| .||+||+++|+.+|+..+.||....+.+ . |.    +++.-+   ..+.+....+...+..+
T Consensus         2 ~~~v~~-~dr~g~l~~i~~~l~~~~~ni~~~~~~~-~-g~----i~~~~~---~~~~~~~~~L~~~l~~i   61 (190)
T 2jhe_A            2 RLEVFC-EDRLGLTRELLDLLVLRGIDLRGIEIDP-I-GR----IYLNFA---ELEFESFSSLMAEIRRI   61 (190)
T ss_dssp             EEEEEE-CSCTTHHHHHHHHHHHTTCCEEEEEEET-T-TE----EEEEEC---CCCHHHHHHHHHHHHHS
T ss_pred             EEEEEE-ecCCcHHHHHHHHHHHcCCCeEEEEEec-C-CE----EEEEEE---eCCHHHHHHHHHHHHcC
Confidence            588999 9999999999999999999999999977 3 54    223221   12445556665555543

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.71  E-value=1.7  Score=43.15  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             CeEEEEEE-EecCCcchHHHHHHHHHhCCCeEEEEEEEeCC--CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010          109 DVFLLKFW-CFQDRKGLLHDVTEVLCELELTIKRVKVSTTP--DGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT  185 (414)
Q Consensus       109 ~~~~i~v~-~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~  185 (414)
                      +.+.|+|. . +|+||.+++|...|+++|+||.--...|..  +|..--.|.|...     +.++   ..+.|++.... 
T Consensus       263 ~~~~i~v~~~-~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-----~~~~---a~~~l~~~~~~-  332 (421)
T 3ab4_A          263 SEAKVTVLGI-SDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-----DGRR---AMEILKKLQVQ-  332 (421)
T ss_dssp             SEEEEEEEEE-ESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-----THHH---HHHHHHHHHTT-
T ss_pred             CEEEEEEecc-CCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-----hHHH---HHHHHHHHHHH-
Confidence            56778888 6 899999999999999999999865444433  4533345777642     2222   22223332111 


Q ss_pred             cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHH
Q 015010          186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIY  262 (414)
Q Consensus       186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~  262 (414)
                                  +                                 .. ..+.++    .+...|.|.+.   ++||.++
T Consensus       333 ------------~---------------------------------~~-~~v~~~----~~~a~vsvVG~gm~~~~Gv~a  362 (421)
T 3ab4_A          333 ------------G---------------------------------NW-TNVLYD----DQVGKVSLVGAGMKSHPGVTA  362 (421)
T ss_dssp             ------------T---------------------------------TC-SEEEEE----CCEEEEEEECGGGTSCTTHHH
T ss_pred             ------------c---------------------------------CC-ceEEEe----CCeEEEEEEccCcccCccHHH
Confidence                        0                                 00 012232    35668888885   7999999


Q ss_pred             HHHHHHHhCCceEEe
Q 015010          263 DMMRTLKDYNTQVSY  277 (414)
Q Consensus       263 ~i~~~L~~~~l~I~~  277 (414)
                      ++..+|++.|+||..
T Consensus       363 ~~f~aL~~~~InI~~  377 (421)
T 3ab4_A          363 EFMEALRDVNVNIEL  377 (421)
T ss_dssp             HHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHCCCCEEE
Confidence            999999999999993

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.52  E-value=0.32  Score=43.48  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC--CCCeEEEEEEEec
Q 015010          108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT--PDGRVMDLFFITD  160 (414)
Q Consensus       108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~~  160 (414)
                      .+...|+|.+-+|+||..++|..+|++.|+||----...+  .++.....|.+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~   87 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR   87 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence            3577888875599999999999999999999974322221  1344444576654

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.28  E-value=0.18  Score=50.30  Aligned_cols=105  Identities=19%  Similarity=0.183  Sum_probs=66.9

Q ss_pred             CeEEEEEE-ecCcccHHHHHHHHHHhCCceEEeEEEEEe-eC--CCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010          246 SHTLIQIL-GQDHKGLIYDMMRTLKDYNTQVSYGRFFAK-PR--GNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR  321 (414)
Q Consensus       246 ~~t~v~V~-~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~-t~--g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  321 (414)
                      +.+.|+|. ..|+||.+++|...|+++|+||..  |... +.  .+...=.|.+..     .+.++..   +.|++ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~--I~q~~s~~~~g~~~isf~v~~-----~~~~~a~---~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVFSVEDGTTDITFTCPR-----SDGRRAM---EILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEE--EEECCCC--CCEEEEEEEEET-----TTHHHHH---HHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEE--EEccCccccCCcceEEEEEec-----hhHHHHH---HHHHH-HHH
Confidence            45677887 589999999999999999999985  4311 11  123344566652     1223322   33332 222


Q ss_pred             CcceeeecCCCCceeeee---eeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010          322 PLRVAVVNRGPDAELLVA---NPVELSGR---GRPLVFYDITLALKILSISIFS  369 (414)
Q Consensus       322 ~~~~~~~~~~~~~~v~~~---~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~  369 (414)
                      ++..        ..+.+.   .++.|.|.   ++||+++.+..+|.+.|+||..
T Consensus       332 ~~~~--------~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  377 (421)
T 3ab4_A          332 QGNW--------TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL  377 (421)
T ss_dssp             TTTC--------SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCE
T ss_pred             HcCC--------ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEE
Confidence            2111        011111   26777775   7999999999999999999984

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=92.78  E-value=0.21  Score=47.19  Aligned_cols=54  Identities=9%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      .|-+...|+||-||++-..|+..|||+.+  |.+++.+.+.| .+.||| |-+|..-+
T Consensus       202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~-~Y~Ffv-D~eg~~~d  255 (283)
T 2qmx_A          202 SIVFALPNEQGSLFRALATFALRGIDLTK--IESRPSRKKAF-EYLFYA-DFIGHRED  255 (283)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTT-EEEEEE-EEESCTTS
T ss_pred             EEEEEcCCCCchHHHHHHHHHHcCCCeeE--EEeeEcCCCCc-ceEEEE-EEecCCCc
Confidence            44444469999999999999999999995  54443555554 568988 66776543

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.68  E-value=1.4  Score=42.32  Aligned_cols=53  Identities=15%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             eEEEEEEec--CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEE-EEEEEEecCCCC
Q 015010          247 HTLIQILGQ--DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCE-VDLFIMQADGKK  301 (414)
Q Consensus       247 ~t~v~V~~~--DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~-~D~F~v~~~g~~  301 (414)
                      .+.+.+..+  |+||-|+++...|+.+|+|..  +|.+....... .=.|+++.+|..
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~  261 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMT--SFISRPIKGRTGTYSFIVTLDAAP  261 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEE--EEEEEEETTEEEEEEEEEEESSCT
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceE--EEEeeECCCCCccEEEEEEEeCCc
Confidence            344444444  799999999999999999999  48775544444 445788877764

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.61  E-value=1.1  Score=43.11  Aligned_cols=48  Identities=15%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          347 RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       347 ~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      .|+||-||++-..|+..|||+.+  |.++....+.| .+.||| |.+|..-+
T Consensus       216 ~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~-~Y~Ffi-D~eg~~~d  263 (329)
T 3luy_A          216 VTGPGVLANLLDVFRDAGLNMTS--FISRPIKGRTG-TYSFIV-TLDAAPWE  263 (329)
T ss_dssp             CCSTTHHHHHHHHHHHTTCCEEE--EEEEEETTEEE-EEEEEE-EESSCTTS
T ss_pred             CCCCCHHHHHHHHHHHCCcceEE--EEeeECCCCCc-cEEEEE-EEeCCcCC
Confidence            38999999999999999999985  55444666655 568987 67786544

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=90.54  E-value=0.52  Score=45.02  Aligned_cols=54  Identities=15%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             eEEEEeC-CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010          341 PVELSGR-GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP  398 (414)
Q Consensus       341 ~lev~~~-DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~  398 (414)
                      .|-+... |+||-||++-..|+..|||+.+  |.++....+.| .+.||| |.+|..-+
T Consensus       203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~-~Y~Ffi-D~eg~~~d  257 (313)
T 3mwb_A          203 TVVVPLPEDHPGALMEILDQFASRGVNLSR--IESRPTGQYLG-HYFFSI-DADGHATD  257 (313)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTT-SEEEEE-EEESCTTS
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHCCccEEE--EEEeecCCCCc-cEEEEE-EEeCCCCc
Confidence            4445554 9999999999999999999985  54443555544 468998 66676533

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.13  E-value=0.87  Score=42.86  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010          247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK  301 (414)
Q Consensus       247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~  301 (414)
                      .|.|.+..+|+||-|+++...|+.+|+|+.  +|.+...... ..-.|+++-+|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLT--KIESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTEEEEEEEEESCT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCee--EEEeeEcCCCCcceEEEEEEecCC
Confidence            466777778999999999999999999999  4887554433 4556888866763

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.64  E-value=0.98  Score=44.75  Aligned_cols=50  Identities=16%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      +...|.+.- .|+||.+..|+.+|.++|+||......+ .++.++-++-|..
T Consensus       330 ~~~rl~~~h-~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIH-ENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEE-ESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEe-CCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            456788888 9999999999999999999999999999 8888887777765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.31  E-value=0.59  Score=46.36  Aligned_cols=60  Identities=8%  Similarity=0.021  Sum_probs=45.2

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCC-CCCchHHHHHHHH
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGN-LEPRNKIEDLVRK  408 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~-~l~~~~~~~~i~~  408 (414)
                      .|-+.-+|+||.+..|+.+|.++|+||..-...+  .|+.  +.-++-|   ++. ++.++ .+++|++
T Consensus       333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~--A~~vidv---D~~~~~~~~-~l~~l~~  393 (404)
T 1sc6_A          333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQM--GYVVIDI---EADEDVAEK-ALQAMKA  393 (404)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSE--EEEEEEE---ECCHHHHHH-HHHHHHT
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCE--EEEEEEc---CCCCCCCHH-HHHHHhc
Confidence            5777888999999999999999999999999999  8887  5544444   332 13333 5566653

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=89.27  E-value=0.96  Score=42.20  Aligned_cols=49  Identities=14%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             eEEEEe---CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCC
Q 015010          341 PVELSG---RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEAD  393 (414)
Q Consensus       341 ~lev~~---~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~  393 (414)
                      .|-+..   .|+||-|+++-..|+..|||+.+  |.+++.+.+.| .+.||| |.+
T Consensus       188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~-~Y~Ffi-D~e  239 (267)
T 2qmw_A          188 SLMFLITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLG-MYRFFV-QAD  239 (267)
T ss_dssp             EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTT-CEEEEE-EES
T ss_pred             EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeE--EEEeecCCCCc-cEEEEE-EEe
Confidence            444455   79999999999999999999995  54433555544 468998 444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=88.51  E-value=1.4  Score=45.12  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=43.0

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010          244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ  296 (414)
Q Consensus       244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~  296 (414)
                      .+.+..+.+.-+|+||.+..++..|.++|+||.+-++.....|+.+.=++.++
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd  503 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD  503 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC
Confidence            34567788999999999999999999999999999998554566666555554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.19  E-value=1.7  Score=43.55  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=69.0

Q ss_pred             CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010          246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP  322 (414)
Q Consensus       246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  322 (414)
                      +.+.|+|..   .+.||.+++|..+|++++++|..  |.+. .   ..-.|.++.+.  +.  ...+.+.+.|.+.+...
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~-~---~~is~~V~~~d--~~--~~~~~~~~el~~~~~~~  366 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSG-V---DSVSLVIEDCK--LD--GKCDKIIEEIKKQCNPD  366 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEE-T---TEEEEEEEHHH--HT--TTHHHHHHHHHHHSCCS
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecC-C---CEEEEEEecch--HH--HHHHHHHHHHHHhcCCC
Confidence            456788886   68999999999999999999985  4422 1   22346665211  10  12344555555544311


Q ss_pred             cceeeecCCCCceeeee---eeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010          323 LRVAVVNRGPDAELLVA---NPVELSGR---GRPLVFYDITLALKILSISIFSVE  371 (414)
Q Consensus       323 ~~~~~~~~~~~~~v~~~---~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~  371 (414)
                                  ++.+.   .+|.|.|.   .+||+.+++-.+|.+.|++|..--
T Consensus       367 ------------~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          367 ------------SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             ------------EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             ------------cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence                        11111   37777776   589999999999999999998644

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.74  E-value=2.3  Score=43.59  Aligned_cols=61  Identities=16%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREET  174 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i  174 (414)
                      ....|.+.- +|+||.+.+|+..|.++|+||...++... .++.++-++.+.++    .+++.+++|
T Consensus       453 ~~~~l~v~~-~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~~~~~l~~l  514 (529)
T 1ygy_A          453 QGINLIIHY-VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VPDDVRTAI  514 (529)
T ss_dssp             CSEEEEEEE-SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CCHHHHHHH
T ss_pred             CccEEEEEc-CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----CCHHHHHHH
Confidence            456788888 99999999999999999999999999874 35667766777542    355555555

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=87.41  E-value=1.7  Score=41.49  Aligned_cols=54  Identities=22%  Similarity=0.433  Sum_probs=41.3

Q ss_pred             CeEEEEEEec-CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010          246 SHTLIQILGQ-DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK  301 (414)
Q Consensus       246 ~~t~v~V~~~-DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~  301 (414)
                      ..|.|.+..+ |+||-|+++...|+.+|+|..  +|.+...... ..=.|+++.+|..
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLS--RIESRPTGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTSEEEEEEEESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEE--EEEEeecCCCCccEEEEEEEeCCC
Confidence            4577777785 999999999999999999998  4876544323 3446888866763

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.26  E-value=5.6  Score=39.40  Aligned_cols=51  Identities=14%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEe
Q 015010          107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT  159 (414)
Q Consensus       107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~  159 (414)
                      .++...|.+.= .|+||.+.+|..+|+++|+||..-.-.| .++++.-+.-|.
T Consensus       340 ~~~~~r~~~~h-~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~y~~~d~~  390 (416)
T 3k5p_A          340 RPTGTRFMHVH-ENRPGILNSLMNVFSHHHINIASQFLQT-DGEVGYLVMEAD  390 (416)
T ss_dssp             CSSSEEEEEEE-CCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCEEEEEEEC
T ss_pred             CCCceEEEEEe-cCCccHHHHHHHHHHHcCCCHHHHhccC-CCceEEEEEEec
Confidence            34578999999 9999999999999999999999888888 777766555553

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=83.30  E-value=3.3  Score=38.53  Aligned_cols=51  Identities=25%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecC
Q 015010          246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQAD  298 (414)
Q Consensus       246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~  298 (414)
                      ..|.+.+..   +|+||-|+++...|+.+|+|..  +|.+...... ..-.|+++-+
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCee--EEEEeecCCCCccEEEEEEEe
Confidence            345666666   8999999999999999999999  4887554433 4456888855

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=83.06  E-value=19  Score=35.83  Aligned_cols=32  Identities=19%  Similarity=0.414  Sum_probs=27.9

Q ss_pred             CeEEEEEEec---CcccHHHHHHHHHHhCCceEEe
Q 015010          246 SHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSY  277 (414)
Q Consensus       246 ~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~  277 (414)
                      +...|.|.+.   .+||+.+++..+|++.|+||..
T Consensus       373 ~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~m  407 (446)
T 3tvi_A          373 NMALVATVGTGMAKTKGIANKIFTALSKENVNIRM  407 (446)
T ss_dssp             EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEE
Confidence            4568888875   5899999999999999999984

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=82.83  E-value=1.7  Score=44.33  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCC-CChHHHHHHHHHHHHHHc
Q 015010          246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKI-VDPSKQDALCSRLRMELL  320 (414)
Q Consensus       246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~-~~~~~~~~l~~~L~~~l~  320 (414)
                      +.+.|+|.+   .++||.+++|-.+|+++|++|..  |.++ .   .-=.|.++ .+.... ...+.++    .+.+.+.
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~--I~ss-e---~sis~~v~~~~~~~~~~~~~~l~----~~~~el~  409 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VATS-E---VSISLTLDPSKLWSRELIQQELD----HVVEELE  409 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EEEE-T---TEEEEEECCGGGSSSCCCHHHHH----HHHHHHT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEE--EEeC-C---CeEEEEEechHhhhhhHHHHHHH----HHHHHhC
Confidence            457888886   67899999999999999999996  5532 1   22346664 221110 0112222    2333343


Q ss_pred             CCcceeeecCCCCceeeeeeeEEEEeC--CccchHHHHHHHHHhCCceEEEE
Q 015010          321 RPLRVAVVNRGPDAELLVANPVELSGR--GRPLVFYDITLALKILSISIFSV  370 (414)
Q Consensus       321 ~~~~~~~~~~~~~~~v~~~~~lev~~~--DRpGLL~dIt~~l~~~gl~I~~A  370 (414)
                      .-..+...     ..+   .+|.|.|.  ..||+.+.+-.+|.+.|+||..-
T Consensus       410 ~~~~v~~~-----~~~---a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI  453 (510)
T 2cdq_A          410 KIAVVNLL-----KGR---AIISLIGNVQHSSLILERAFHVLYTKGVNVQMI  453 (510)
T ss_dssp             TTSEEEEE-----EEE---EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE
T ss_pred             CCCeEEEe-----CCc---EEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE
Confidence            21111110     011   25666665  78999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.71
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.42
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.31
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.19
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.88
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.69
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.57
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.52
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.48
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.4
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.31
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.16
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.15
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.13
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.13
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.12
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.11
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.09
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.99
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.96
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.9
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.6
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.23
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.83
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.69
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	89.25
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.81

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.71  E-value=4.8e-08  Score=74.54  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      .++.|++.| +||||++++++++|+++||||.+++.++ .++...-.+.|..      ++...+++++.|+..-
T Consensus         4 ~~~vitv~G-~DrpGiva~vt~~l~~~g~NI~d~~~~~-~~~~~~~~~~v~~------~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           4 QHLVITAVG-TDRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISG------SPSNITRVETTLPLLG   69 (86)
T ss_dssp             EEEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEE------CHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEe-CCCChHHHHHHHHHHHCCCeEEEeEeEE-ECCeeEEEEEEEc------CcccHHHHHHHHHHHH
Confidence            478999999 9999999999999999999999999999 6777666777764      3445677777666644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.42  E-value=4.5e-07  Score=68.40  Aligned_cols=65  Identities=15%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      +.|++.| +||||++++|+++|+++|+||.+.+.++ .++...-.+.+..+.+  .+   .+++++.|+...
T Consensus         3 ~vitv~g-~DrpGiVa~vt~~l~~~g~NI~d~~q~~-~~~~f~~~~~v~~~~~--~~---~~~l~~~l~~la   67 (83)
T d1zpva1           3 AIITVVG-KDKSGIVAGVSGKIAELGLNIDDISQTV-LDEYFTMMAVVSSDEK--QD---FTYLRNEFEAFG   67 (83)
T ss_dssp             EEEEEEE-SCCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEESSC--CC---HHHHHHHHHHHH
T ss_pred             EEEEEEc-CCCCCHHHHHHHHHHHCCCeEEEEEeEE-eCCEEEEEEEEEEecC--CC---HHHHHHHHHHHH
Confidence            5799999 9999999999999999999999999998 5666554566654322  12   356777776644

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.31  E-value=1.9e-06  Score=65.37  Aligned_cols=64  Identities=19%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010          246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM  317 (414)
Q Consensus       246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~  317 (414)
                      .+.+|++.|+||||++++++++|+++|+||.+++..  +.++...-.+.+..      ++...++|++.|.+
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~~~~~~v~~------~~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEFTLLMLISG------SPSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCeeEEEEEEEc------CcccHHHHHHHHHH
Confidence            467999999999999999999999999999998887  45556655555652      13345667776644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.19  E-value=4.5e-06  Score=62.68  Aligned_cols=65  Identities=20%  Similarity=0.257  Sum_probs=57.0

Q ss_pred             eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhC
Q 015010           21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVC   85 (414)
Q Consensus        21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~   85 (414)
                      +++++.||||||+.++++++|+++|.+|.+..-.++++.|.-.+.+..+.+.+.+.|+..|..++
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la   67 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFG   67 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHH
Confidence            47999999999999999999999999999998888888888888888777777777888887654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.88  E-value=3.4e-05  Score=59.02  Aligned_cols=36  Identities=14%  Similarity=0.240  Sum_probs=33.4

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST  146 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T  146 (414)
                      .+.|+|.| +|||||+++|+++|+++|+||.+.+..|
T Consensus         6 tv~v~v~g-~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           6 TVEVYVES-DDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEEEE-SCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEE-CCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            56889999 9999999999999999999999988776

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=0.00012  Score=53.94  Aligned_cols=62  Identities=11%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHH
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKI  409 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~  409 (414)
                      .|-+.-.||||+|.+|+.+|.+.|+||.....++...|+.  +.-.+-   .++ +++++ .+++|++.
T Consensus         5 ~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~--a~~vi~---vD~-~~~~~-vl~~I~~~   66 (78)
T d1ygya3           5 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPG--ATILLR---LDQ-DVPDD-VRTAIAAA   66 (78)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSC--EEEEEE---ESS-CCCHH-HHHHHHHH
T ss_pred             EEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCe--EEEEEE---cCC-CccHH-HHHHHHcC
Confidence            6778889999999999999999999999999988556666  543333   333 55554 67887763

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.57  E-value=0.00021  Score=54.34  Aligned_cols=67  Identities=10%  Similarity=0.101  Sum_probs=51.3

Q ss_pred             eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe------c--CCEEEEEEEEEcCCCCCHHHHHHHHHHhCC
Q 015010           20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK------D--GKWCYLVFWVVGKPTTRWSLLKNRLLEVCP   86 (414)
Q Consensus        20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t------d--g~~~~d~f~v~~~~g~~~~~l~~~l~~~~~   86 (414)
                      ...|+|.|+||||+.++++++|+++|.+|.+..-.+      |  .++|.--+.+.-+.+.+...|+..|..+|.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~   80 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCT   80 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHH
Confidence            347899999999999999999999999998876432      2  234555555555667788889999988764

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=4.4e-05  Score=56.23  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=42.0

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHH
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVR  407 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~  407 (414)
                      -|.|.+.||||+|++|+.+|++.|+||......+...|... ..-.||+.+.++. +  +.++++|+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~-~~~~i~v~~~~~~-l--~~ll~kL~   65 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHE-GKALIYFEIEGGD-F--EKILERVK   65 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTT-TEEEEEEEECSSC-H--HHHHHHHH
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEE-EEEEEEEEcCccc-H--HHHHHHHH
Confidence            58899999999999999999999999999887763344321 3447778766432 3  23566665

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.48  E-value=0.00025  Score=51.20  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=42.0

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      +|.|.. +||||-|++++++|.+.|+||....++. ..++.+-+|.|.+
T Consensus         1 ViaV~v-~d~pG~L~~v~~~L~~~~InI~~~y~~~-~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISC-PNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEE-ESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESC
T ss_pred             CEEEEe-cCCccHHHHHHHHHHHCCCCEEEEEEEc-CCCcEEEEEEECC
Confidence            478899 9999999999999999999999999998 5678887888854

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=4.4e-05  Score=56.24  Aligned_cols=49  Identities=18%  Similarity=0.245  Sum_probs=36.7

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeE--EEEEEEec
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRV--MDLFFITD  160 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~--~d~f~V~~  160 (414)
                      ..|.|.+ .||||+|++|+.++++++.||......+..+|.+  .-.+++.+
T Consensus         2 ~~i~i~~-~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIA-ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEE-ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEE-ecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            4689999 9999999999999999999999999998677653  33455554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.00091  Score=48.97  Aligned_cols=48  Identities=19%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEE
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFI  158 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V  158 (414)
                      .+.|.+.- .|+||.+++|+.+|+++|+||...++.+. .+|.++-++.+
T Consensus         3 G~~L~i~~-~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHY-VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             SEEEEEEE-SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             ceEEEEEe-CCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            46788888 99999999999999999999999998764 45566655555

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.16  E-value=0.00046  Score=49.71  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEc
Q 015010           22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVG   68 (414)
Q Consensus        22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~   68 (414)
                      +|-|..||+||-|.+++++|.+.|.+|...|.+..+++++.+|.|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            36678899999999999999999999999999987789999999953

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.15  E-value=0.00037  Score=50.06  Aligned_cols=45  Identities=13%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEE
Q 015010          341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILL  389 (414)
Q Consensus       341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv  389 (414)
                      .|.|...||||.|++|+.+|.+.|+||.+--+..  ..+.  .+-+|-+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~--t~~~--~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADF--GILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSC--EEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEee--cCCC--CEEEEEE
Confidence            6899999999999999999999999999988877  6777  7777755

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.001  Score=48.59  Aligned_cols=66  Identities=9%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.+...|+||+|.+|++.|+..|+||.+-.+..+...+..-=++.++  |    +++..+++.+.|.+.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~--g----~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK--G----DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE--E----CTTHHHHHHHHHTTST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE--c----CHHHHHHHHHHHhCCc
Confidence            3689999999999999999999999999997766433333333333333  2    1245677777775543

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.13  E-value=0.0013  Score=47.14  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=39.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      .|.|.. .||||.|++++++|++.|+||.+-.+..+. +..+-.+.|.+
T Consensus         5 QisV~~-eNkpG~L~~v~~~~~~~~inI~sl~v~~t~-~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFL-ENKSGRLTEVTEVLAKENINLSALCIAENA-DFGILRGIVSD   51 (70)
T ss_dssp             EEEEEE-CSSSSHHHHHHHHHHHTTCCEEEEEEEECS-SCEEEEEEESC
T ss_pred             EEEEEE-eCCCcHHHHHHHHHHHCCCCEEEEEEeecC-CCCEEEEEECC
Confidence            689999 999999999999999999999999998844 44454565543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.12  E-value=0.0012  Score=48.09  Aligned_cols=65  Identities=14%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      ..|.+.. .|+||.|++|++.|+..|+||.+-.+.-+.+ |..--++.+..      +++..++|...|++..
T Consensus         3 ~tisv~v-eN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLM-ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEE-ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEE-ECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence            4678899 9999999999999999999999999985444 44444455544      4567788877777654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.11  E-value=0.00085  Score=48.90  Aligned_cols=66  Identities=8%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      .+.+...|+||+|.+|++.|+..|+||.+-.+..+...+..-=++.+.  |    +++..+++.+.|.+.++
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~--~----~~~~i~qi~kQL~Klvd   69 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--G----PDEIVEQITKQLNKLIE   69 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--E----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE--C----CHHHHHHHHHHHhCCcC
Confidence            588999999999999999999999999997776432333333334443  2    35677888888877553

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0013  Score=47.68  Aligned_cols=66  Identities=9%  Similarity=0.124  Sum_probs=46.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010          249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL  320 (414)
Q Consensus       249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  320 (414)
                      .+.+...|+||+|.++++.|+..|+||.+-.+..+...+..  -|.+...|    +++..+++.+.|.+.+.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iS--R~tivv~~----~~~~i~qi~kQL~Klid   68 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS--RMTIQTVG----DEKVLEQIEKQLHKLVD   68 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEE--EEEEEEES----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCee--EEEEEEEC----CHHHHHHHHHHHhCCCC
Confidence            48899999999999999999999999998666632222222  23222112    35677888888877553

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0021  Score=46.63  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010          112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAVL  182 (414)
Q Consensus       112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~l  182 (414)
                      .|.+.. .|+||+|+++++.|+..|+||.+-.+.-+.+....- ++.+..      +++..+++...|++..
T Consensus         3 tlsv~v-~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~------~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           3 ILSVLL-ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEE-ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHHST
T ss_pred             EEEEEE-ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC------CHHHHHHHHHHHhCCC
Confidence            578899 999999999999999999999999998555544333 233332      4667777877777654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0016  Score=47.56  Aligned_cols=64  Identities=11%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010          111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAV  181 (414)
Q Consensus       111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~  181 (414)
                      ..|.+.. .|+||+|++|++.|+..|+||.+-.+..+.+....- ++.+..      +++..+++...|++.
T Consensus         4 ~tisvlv-~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g------~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLV-HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG------DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEE-ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE------CTTHHHHHHHHHTTS
T ss_pred             EEEEEEE-eCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc------CHHHHHHHHHHHhCC
Confidence            5788999 999999999999999999999999987766554333 344433      234566666666543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0058  Score=45.10  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC
Q 015010          110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT  147 (414)
Q Consensus       110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~  147 (414)
                      ...|.+.- .|+||.+++|+.+|+++|+||.+....+.
T Consensus        11 ~~rl~i~~-~d~PGvla~I~~~l~~~~iNI~~~~~~~~   47 (84)
T d1sc6a3          11 GRRLMHIH-ENRPGVLTALNKIFAEQGVNIAAQYLQTS   47 (84)
T ss_dssp             SEEEEEEE-ESCTTHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred             CeEEEEEe-CCcCCHHHHHHHHHHHcCCCHHHhccccC
Confidence            36788888 99999999999999999999999988883

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0051  Score=45.39  Aligned_cols=35  Identities=3%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE
Q 015010          248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA  282 (414)
Q Consensus       248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t  282 (414)
                      ..+.+.-+|+||.+++|+..|+++|+||.+-...+
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            46777889999999999999999999999866653

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.004  Score=47.38  Aligned_cols=71  Identities=10%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010          244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKKIVDPSKQDALCSRLRMEL  319 (414)
Q Consensus       244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l  319 (414)
                      ..+.|.|.+..+|+||-|+++...|+++|+|+.+  |.+...... ..=.||++.+|..  + +..+.+.+.|+..+
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~--IeSRP~~~~~~~Y~F~id~eg~~--~-~~i~~~l~~L~~~~   84 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTH--IESRPSRLNKDEYEFFTYLDKRT--K-PVLGSIIKSLRNDI   84 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTS--EEEEECSSCTTEEEEEECBCGGG--H-HHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEE--EEeeccCCCCceEEEEEEcccCC--h-HHHHHHHHHHHHhh
Confidence            3455778888899999999999999999999985  776543323 3345888866652  2 33444444454433

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.83  E-value=0.015  Score=42.43  Aligned_cols=49  Identities=14%  Similarity=0.259  Sum_probs=35.6

Q ss_pred             EEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCC
Q 015010          343 ELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGN  395 (414)
Q Consensus       343 ev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~  395 (414)
                      -+...|+||-|+++-..|+++|+|+.+  |.+++...+. -.+.||| |-+|.
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~--IeSRP~~~~~-~~Y~F~i-d~~g~   54 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQL-GMYRFFV-QADSA   54 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSST-TCEEEEE-EESCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEE--EEeeecCCCC-ceEEEEE-EEecC
Confidence            344579999999999999999999985  4433244443 3458999 45565

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.69  E-value=0.018  Score=41.98  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCC
Q 015010          250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGK  300 (414)
Q Consensus       250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~  300 (414)
                      +.+...|+||-|+++...|+++|+|+.+  |.+....+. -.=.|+++-+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~--IeSRP~~~~~~~Y~F~id~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFVQADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEEEESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEecC
Confidence            4444579999999999999999999995  876544433 344588886665

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.25  E-value=0.51  Score=35.09  Aligned_cols=54  Identities=15%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010          106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD  160 (414)
Q Consensus       106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~  160 (414)
                      ...+.+.|.+.. +|+||-|+++-.+|+++|+|+..-.-.-..+...--.|+|.-
T Consensus        12 ~~~~ktSl~f~~-~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          12 NQNGAISLIFSL-KEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             CSSCCEEEEEEE-ECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCCcEEEEEEe-CCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            344578888999 999999999999999999998765444333333233588854

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.81  E-value=3.5  Score=27.92  Aligned_cols=44  Identities=11%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             EEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010          249 LIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ  296 (414)
Q Consensus       249 ~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~  296 (414)
                      .|.+.+   +++||+..++..+|++.|+||.-  |+ . .....-=.|.|+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~m--Is-q-~~Se~~Is~~V~   49 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKM--IA-Q-GSSEVNISFVID   49 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCE--EE-E-SSCSSEEEEEEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHH--ee-e-cCccceEEEEEe
Confidence            566766   68999999999999999999984  44 1 121233456665