Citrus Sinensis ID: 015029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHcccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccccEEEEEEcEEEEEEEcccccEEEEccccccccccccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHcccHHHHHccccccccccccccccccccEccccccccccccHcccccccccccccccHHHHHcHHcccccccccccccccccccccccEEEEEcccEEEEEEEEccccHccEEEEEcccEEEEEEEccccccccEccccccccccccccEEEEccEEEEEEEccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEccHHHccccEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEkgaslapgdsrFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEetgelqkqpletgptnvvstnnvqpatnisstedVETVMDVSNeaamaaparpkyrhefyqkpEEVVVTVFAkgipaknvtvdfgEQILSVsidvpgeeayhfqprlfgkiipakcryeVLSTKVEIRLAkaepiqwsslefskgavvpqrvnppsvsgsprptypsskptrvdWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVesngtvlstnwkevgskkvegsppdgmemkkwey
Flexible Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRaielepsmskAYWRKATACMKLEEYETAKVALEkgaslapgdsRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGelqkqpletgptnvvstnnvqpatnisstedvETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPqrvnppsvsgsprptypsskptrvdwDKLEAQVKKeekeekldgdaalNKFFQEIYADADEDTRRAMKKsfvesngtvlstnwkevgskkvegsppdgmemkkwey
Low Complexity Region (SEG)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVkkeekeekLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered region (IsUnstruct)
***********AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISE******************************************************YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS*****************************************************LNKFFQEIYA*************************************************
Disordered Region (DISOPRED)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRV************DIFSEGFCLFISEETGELQKQPL*******V*TNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS*********************************************************ALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE*
Disordered Region (DISEMBL)
********AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV***********************RVDWDKLEAQV*********DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered Region (DISPRO)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV*****Y*************************CL********************************************************PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS*L*******************************RVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q0JL44	367	Protein SGT1 homolog OS=O	yes	no	0.871	0.983	0.589	1e-119
Q9SUR9	350	Protein SGT1 homolog A OS	yes	no	0.833	0.985	0.582	1e-117
Q9SUT5	358	Protein SGT1 homolog B OS	no	no	0.473	0.547	0.754	1e-85
Q9Y2Z0	365	Suppressor of G2 allele o	no	no	0.814	0.923	0.325	1e-39
Q2KIK0	338	Suppressor of G2 allele o	yes	no	0.471	0.576	0.45	5e-39
Q9CX34	336	Suppressor of G2 allele o	yes	no	0.756	0.931	0.313	9e-39
B0BN85	336	Suppressor of G2 allele o	yes	no	0.495	0.610	0.428	2e-38
Q55ED0	387	Protein SUGT1 homolog OS=	yes	no	0.463	0.496	0.427	9e-38
Q08446	395	Protein SGT1 OS=Saccharom	yes	no	0.468	0.491	0.340	3e-27
O59709	379	Glucose-insensitive trans	yes	no	0.458	0.501	0.362	3e-24

>sp|Q0JL44|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/414 (58%), Positives = 295/414 (71%), Gaps = 53/414 (12%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A+DLE KAK AF+DD FELA +LY+QAIE SP +AEL+ADRAQA IKL N+TEAVADAN+
Sbjct: 6   ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121
           AIEL+PSM KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KE         
Sbjct: 66  AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKE--------- 116

Query: 122 VYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTNN 181
                             C                I+EE  E+  +  E G       + 
Sbjct: 117 ------------------CDE-------------RIAEELSEVPVKKAEDGAAAPSVASF 145

Query: 182 VQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTV 241
           V+   + ++ ++   +++V          +PKYRH+FY    EVV+T+FAKG+PA+NV V
Sbjct: 146 VEEKDDAANMDNTPPMVEV----------KPKYRHDFYNSATEVVLTIFAKGVPAENVVV 195

Query: 242 DFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF 301
           DFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K RY+VLSTKVEIRLAKAE I W+SL++
Sbjct: 196 DFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEIRLAKAEQITWTSLDY 255

Query: 302 SKG-AVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
            K    VPQ++ PP+ S   RP+YPSSK ++ DWDKLEA+VKKEEKEEKL+GDAALNKFF
Sbjct: 256 DKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWDKLEAEVKKEEKEEKLEGDAALNKFF 313

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           ++IY+DADED RRAM KSFVESNGTVLSTNWK+VGSKKVEGSPPDGME+KKWEY
Sbjct: 314 RDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGMELKKWEY 367

Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SUR9|SGT1A_ARATH Protein SGT1 homolog A OS=Arabidopsis thaliana GN=SGT1A PE=1 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/417 (58%), Positives = 293/417 (70%), Gaps = 72/417 (17%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA +L  KAKEAF+DD F++A DLYS+AI++ PN AE FADRAQA IKL++FTEAVADAN
Sbjct: 1   MAKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL+PS++KAY RK TACMKLEEY TAK ALEKGAS+ P +S+F  LI E        
Sbjct: 61  KAIELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLF-ISEETGELQKQPLETGPTNVVST 179
                                            C F I+EE  +L  QP+   P+ + S+
Sbjct: 113 ---------------------------------CNFLITEEEKDLV-QPV---PSTLPSS 135

Query: 180 NNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNV 239
               P +           +DV+  A        KYRHE+YQKPEEVVVTVFAKGIP +NV
Sbjct: 136 VTAPPVSE----------LDVTPTA--------KYRHEYYQKPEEVVVTVFAKGIPKQNV 177

Query: 240 TVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSL 299
            +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP KC+YEVLSTK+EI LAKA+ I W+SL
Sbjct: 178 NIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIITWASL 237

Query: 300 EFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAAL 356
           E  KG AV+P+    P+VS   S RP YPSSK  + DWDKLEA+VKK+EK+EKL+GDAAL
Sbjct: 238 EHGKGPAVLPK----PNVSSEVSQRPAYPSSKKVK-DWDKLEAEVKKQEKDEKLEGDAAL 292

Query: 357 NKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 413
           NKFF+EIY +ADED RRAM KSFVESNGTVLSTNW+EVG+K +E +PPDGME+KKWE
Sbjct: 293 NKFFREIYQNADEDMRRAMSKSFVESNGTVLSTNWQEVGTKTIESTPPDGMELKKWE 349

Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 176/204 (86%), Gaps = 8/204 (3%)

Query: 214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 273
           +RHEFYQKPEE VVT+FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP 
Sbjct: 160 FRHEFYQKPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPE 219

Query: 274 KCRYEVLSTKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPT 330
           KCR+EVLSTKVEIRLAKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP 
Sbjct: 220 KCRFEVLSTKVEIRLAKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPA 275

Query: 331 RVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTN 390
           + DWDKLEA+VKK+EK+EKLDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTN
Sbjct: 276 K-DWDKLEAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTN 334

Query: 391 WKEVGSKKVEGSPPDGMEMKKWEY 414
           WKEVG+KKVE +PPDGME+KKWEY
Sbjct: 335 WKEVGTKKVESTPPDGMELKKWEY 358

Involved in plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different oomycete pathogen isolates like avirulent H.parasitica (downy mildew). Contributes additively with RAR1 to RPP5-dependent resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Functions as negative regulator of RPS5 accumulation by assisting its degradation. May be involved in heat shock response by associating with HSC70-1 chaperone. Required for the SCF(TIR1)-mediated degradation of Aux/IAA proteins, but maybe not for SCF(TIR1) assembly or binding to its Aux/IAA substrates. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. Required for the coronatine/jasmonic acid-mediated signal transduction pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y2Z0|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 199/378 (52%), Gaps = 41/378 (10%)

Query: 49  LQNFTEAVADAN---------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
            Q+F++A+ D +         +A+E +P  ++ Y ++A   + L  Y  A    +K   L
Sbjct: 15  FQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLEL 74

Query: 100 APGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISE 159
            P +S  T ++++ +          C  +E       KN      +L+ F+EG  L I  
Sbjct: 75  NPNNS--TAMLRKGI----------CEYHE-------KNYA---AALETFTEGQKLDIET 112

Query: 160 ETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPA-----RPKY 214
               + +  L+   ++     + Q A    +  +    +    EA   + +     + K 
Sbjct: 113 GFHRVGQAGLQLLTSSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKI 172

Query: 215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK 274
           ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP +
Sbjct: 173 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 232

Query: 275 CRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDW 334
             ++VLSTK+EI+L K E ++W  LE  +G V      P       +  YPSS P   +W
Sbjct: 233 STFKVLSTKIEIKLKKPEAVRWEKLE-GQGDVP----TPKQFVADVKNLYPSSSPYTRNW 287

Query: 335 DKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEV 394
           DKL  ++K+EEK EKL+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +V
Sbjct: 288 DKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDV 347

Query: 395 GSKKVEGSPPDGMEMKKW 412
           G +KVE +PPD ME KK+
Sbjct: 348 GKRKVEINPPDDMEWKKY 365

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 131/200 (65%), Gaps = 5/200 (2%)

Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           K ++++YQ   +V++T+  K +   +V V+F E+ LS  + +P  + Y  + RL   IIP
Sbjct: 144 KIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIP 203

Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 332
            +  ++VLSTK+EI++ K E ++W  LE  +G V     NP       +  YPSS     
Sbjct: 204 EQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDVP----NPKPFIADVKNLYPSSSHYTR 258

Query: 333 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 392
           +WDKL  ++K+EEK EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW 
Sbjct: 259 NWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWS 318

Query: 393 EVGSKKVEGSPPDGMEMKKW 412
           +VG +KVE +PPD ME KK+
Sbjct: 319 DVGKRKVEINPPDDMEWKKY 338

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Bos taurus (taxid: 9913)

>sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 194/373 (52%), Gaps = 60/373 (16%)

Query: 49  LQNFTEAVADAN---------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
            Q+F++A+ D +         +A+E  P  ++ Y ++A   + L +Y      ++K   L
Sbjct: 15  FQSFSDALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKSLEL 74

Query: 100 APGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISE 159
            P +   T L+++ +          C  +E       K+      +L+ F+EG       
Sbjct: 75  NPNNC--TALLRKGI----------CEYHE-------KDYA---SALETFAEG------- 105

Query: 160 ETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFY 219
                  Q L++  TN          T I   ++++   +  +E + +   + K ++++Y
Sbjct: 106 -------QKLDSTDTNF--------DTWIKRCQEIQNGSE--SEVSASQRTQSKIKYDWY 148

Query: 220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEV 279
           Q    V++T+  K +   +V V F E+ LS  + +P  E Y  + RL   IIP +  ++V
Sbjct: 149 QTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKV 208

Query: 280 LSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 339
           LSTK+EI++ K E ++W  LE       P++      +   +  YPSS     +WDKL  
Sbjct: 209 LSTKIEIKMKKPEAVRWEKLEGQGDEPTPKQF-----TADVKNMYPSSSHYTRNWDKLVG 263

Query: 340 QVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKV 399
           ++K+EEK EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KV
Sbjct: 264 EIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKV 323

Query: 400 EGSPPDGMEMKKW 412
           E +PPD ME K++
Sbjct: 324 EINPPDDMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 133/210 (63%), Gaps = 5/210 (2%)

Query: 203 EAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 262
           E + +   + K ++++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    
Sbjct: 132 EVSASQRTQSKIKYDWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSL 191

Query: 263 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRP 322
           + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V      P   +   + 
Sbjct: 192 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDVPA----PKQFTADVKN 246

Query: 323 TYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVES 382
            YPSS     +WDKL  ++K+EEK EKL+GDAALNK FQ+IY+D  ++ +RAM KSF+ES
Sbjct: 247 MYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMES 306

Query: 383 NGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
            GTVLSTNW +VG +KVE +PPD ME K++
Sbjct: 307 GGTVLSTNWSDVGKRKVEINPPDDMEWKQY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1

 Score =  158 bits (399), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 9/201 (4%)

Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           K RHE+YQ    VV+T+FAK + A N  ++   + +++S  +     + F+  LF  I+ 
Sbjct: 195 KVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEMDLFDPIVD 254

Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 332
                   STKVEI++ K+  I+W +LEF+  +     ++  S S    P  PS   ++ 
Sbjct: 255 KDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLMDQISSS----PAVPSPYASKK 310

Query: 333 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 392
           DWDKL       E EEKL+GD ALNK F++I++   ED +RAM KSF ES GTVLSTNW 
Sbjct: 311 DWDKLP-----NEPEEKLEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESGGTVLSTNWD 365

Query: 393 EVGSKKVEGSPPDGMEMKKWE 413
           EVGSKKV G PP G+E K++E
Sbjct: 366 EVGSKKVVGEPPKGLEFKQYE 386

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08446|SGT1_YEAST Protein SGT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT1 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 26/220 (11%)

Query: 212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDF-----GEQILSVSIDVP--GEEAYHFQP 264
           PK++ ++YQ    V +++F   +P     V+        + LS+S  VP  G E + +  
Sbjct: 183 PKFKIDWYQSSTSVTISLFTVNLPESKEQVNIYISPNDRRTLSISYQVPKSGSE-FQYNA 241

Query: 265 RLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF------------SKGAVVPQRVN 312
           +L  ++ P     ++   K+EI L+K +  QW  LE              K +    R+ 
Sbjct: 242 KLSHEVDPKAVSLKIFPKKLEITLSKIDSTQWKKLEEDILTESSRLSDEGKNSDSATRLL 301

Query: 313 PPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTR 372
               +   R +YPSS   ++DW KL+  + +E  EE    D+    FFQ++YA AD DT+
Sbjct: 302 SAETASKERLSYPSSSKKKIDWSKLD--IDEEADEEAGSADS----FFQKLYAGADPDTK 355

Query: 373 RAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
           RAM KSF+ESNGT LST+W++V    V+ SPP+GME K W
Sbjct: 356 RAMMKSFIESNGTALSTDWEDVSKGTVKTSPPEGMEPKHW 395

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Required for both entry into S phase and kinetochore function. Also involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59709|GIT7_SCHPO Glucose-insensitive transcription protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=git7 PE=4 SV=2

 Score =  113 bits (283), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 17/207 (8%)

Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF--QPRLFGKI 270
           + R+++ Q    + + ++AK +  ++V++   +  L + I +     +     P L+ +I
Sbjct: 183 RIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDP-LYEEI 241

Query: 271 IPAKCRYEVLSTKVEIRL-AKAEPIQWSSLEFSKGA----VVPQRVNPPSVSGSPRPTYP 325
           +P K  +++ S+KVEI L  K   I+W +L  S       V  +  N  S SG+      
Sbjct: 242 VPEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGN------ 295

Query: 326 SSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGT 385
            +K    DWD L      EE E    G+AAL   FQ +Y +AD+DTRRAM KS+ ESNGT
Sbjct: 296 -TKNKAKDWDSLAKLADLEEDEPT--GEAALANLFQNLYKNADDDTRRAMMKSYTESNGT 352

Query: 386 VLSTNWKEVGSKKVEGSPPDGMEMKKW 412
            LSTNWK+V SK  E  PP GME KK+
Sbjct: 353 ALSTNWKDVKSKTFETKPPQGMEPKKF 379

Involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
225464635	361	PREDICTED: protein SGT1 homolog [Vitis v	0.871	1.0	0.661	1e-143
390985902	361	SGT1 [Vitis pseudoreticulata]	0.871	1.0	0.659	1e-142
255545142	361	chaperone binding protein, putative [Ric	0.871	1.0	0.654	1e-140
356559728	359	PREDICTED: protein SGT1 homolog B-like [	0.867	1.0	0.632	1e-140
388509998	358	unknown [Lotus japonicus]	0.864	1.0	0.625	1e-139
62467587	370	Sgt1b [Capsicum annuum]	0.888	0.994	0.637	1e-139
51511450	370	SGT1 [Solanum tuberosum]	0.888	0.994	0.630	1e-139
351725565	359	SGT1-2 [Glycine max] gi|208964720|gb|ACI	0.867	1.0	0.628	1e-138
29468339	370	SGT1 [Nicotiana benthamiana]	0.888	0.994	0.644	1e-135
238915472	360	SGT1 [Malus hupehensis]	0.869	1.0	0.644	1e-134

>gi|225464635|ref|XP_002276170.1| PREDICTED: protein SGT1 homolog [Vitis vinifera] gi|302143763|emb|CBI22624.3| unnamed protein product [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/414 (66%), Positives = 307/414 (74%), Gaps = 53/414 (12%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYTQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           RAIEL+PSMSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKE        
Sbjct: 61  RAIELDPSMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                            C  I+EET  L KQ +   P  V S  
Sbjct: 113 ----CEE--------------------------C--IAEETDGLPKQSVVPAPEAVESPE 140

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
            V  A  +             ++  M   ++PKYRHE+YQKP+EVVVT+FAKG+P +NV 
Sbjct: 141 TVVAAEEV-------------HQVPMVTASKPKYRHEYYQKPQEVVVTIFAKGVPDENVV 187

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVLSTK+EIRLAKAE I W+SLE
Sbjct: 188 VDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRLAKAEEIHWTSLE 247

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           FSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQVKKEEKEEKLDGDAALNKFF
Sbjct: 248 FSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEEKLDGDAALNKFF 307

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           ++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Sbjct: 308 RDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390985902|gb|AFM35697.1| SGT1 [Vitis pseudoreticulata]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/414 (65%), Positives = 305/414 (73%), Gaps = 53/414 (12%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYNQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           RAIEL+P MSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKE        
Sbjct: 61  RAIELDPLMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                               I+EET  L KQ +   P  V S  
Sbjct: 113 ----CEER----------------------------IAEETDGLPKQSVVQAPEAVESPE 140

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
            V  A  +             ++  M   ++PKYRHE+YQKP+EVVVT+FAKGIP +NV 
Sbjct: 141 TVVAAEKV-------------HQVPMVTASKPKYRHEYYQKPQEVVVTIFAKGIPDENVV 187

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVLSTK+EIRLAKAE I W+SLE
Sbjct: 188 VDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRLAKAEEIHWTSLE 247

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           FSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQVKKEEKEEKLDGDAALNKFF
Sbjct: 248 FSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEEKLDGDAALNKFF 307

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           ++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Sbjct: 308 RDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 361

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545142|ref|XP_002513632.1| chaperone binding protein, putative [Ricinus communis] gi|223547540|gb|EEF49035.1| chaperone binding protein, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/414 (65%), Positives = 310/414 (74%), Gaps = 53/414 (12%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE+KAKEAF+DD+F LA DL +QAI + PNSAEL+ADRAQA+IKL+N TEAVADAN
Sbjct: 1   MASDLERKAKEAFVDDHFALAADLLTQAIGLDPNSAELYADRAQANIKLRNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           RAI+L+PSM+KAY RK TAC++LEEY+TAK ALE GASLAP D RFTNLIKE        
Sbjct: 61  RAIQLDPSMAKAYLRKGTACIRLEEYQTAKAALEIGASLAPEDPRFTNLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                            C  I++ET  L K   E  P NVV   
Sbjct: 113 ----CEE--------------------------C--IADETDNLPKHASE-APENVVPME 139

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
           +VQP            V D  ++  +  P++PKYRHEFYQKPEEVVVT+FAKG+PA +V 
Sbjct: 140 DVQP------------VNDHISKVPIVTPSKPKYRHEFYQKPEEVVVTIFAKGLPASSVA 187

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSI+VPGE+AYHFQPRLFGKIIPAKCRY VLSTKVE+ L KA+PI W+SLE
Sbjct: 188 VDFGEQILSVSINVPGEDAYHFQPRLFGKIIPAKCRYNVLSTKVEVHLVKADPIHWTSLE 247

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           FS    V QR N  S +GS RP+YPSSKP R DWD+LEA+VKKEEK+EKLDGDAALNKFF
Sbjct: 248 FSNEITVLQRANVSSGTGSHRPSYPSSKPKRTDWDRLEAEVKKEEKDEKLDGDAALNKFF 307

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           ++IY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEM+KWEY
Sbjct: 308 RDIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMRKWEY 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559728|ref|XP_003548149.1| PREDICTED: protein SGT1 homolog B-like [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/414 (63%), Positives = 305/414 (73%), Gaps = 55/414 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAELYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL  S+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKE   L+ + 
Sbjct: 61  KAIELNSSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAE- 119

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
                                         E + + I EE                 +T 
Sbjct: 120 ------------------------------ESYTIPIIEEK---------------TTTQ 134

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
           +  P       +DV+   D+  +  +A   +PKYRHEFYQKP+++VVT+FAK IP +++T
Sbjct: 135 DATP-------KDVQQQDDLLEKPTVAV-TKPKYRHEFYQKPDQLVVTIFAKKIPKESIT 186

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSI+VPGE+ Y FQPRLFGKI+P+ CRYEVLSTK+EIRLAKAEPI W+SLE
Sbjct: 187 VDFGEQILSVSINVPGEDVYAFQPRLFGKIVPSNCRYEVLSTKIEIRLAKAEPIHWTSLE 246

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           F+   VVPQRVN  SV+GS RP+YPSSK TR DWDK+EAQVKKEEK+EKLDGDAALNKFF
Sbjct: 247 FTTDIVVPQRVNASSVTGSQRPSYPSSKQTR-DWDKIEAQVKKEEKDEKLDGDAALNKFF 305

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           +EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGS PDGME+KKWEY
Sbjct: 306 REIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSAPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509998|gb|AFK43065.1| unknown [Lotus japonicus]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/414 (62%), Positives = 304/414 (73%), Gaps = 56/414 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA +L +QAI++ P  AEL+ADRAQA+IKL NFTEA+ADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVELLTQAIDVDPKHAELYADRAQANIKLNNFTEAIADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL PS+SKAY RK TACMKLEEY+TAK ALE GA+L+   SRF NLIKE   L+ + 
Sbjct: 61  KAIELNPSLSKAYLRKGTACMKLEEYQTAKTALEMGATLSTDKSRFLNLIKECDKLIAE- 119

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
                                         E + + I E+   L            VS  
Sbjct: 120 ------------------------------ESYPMPIQEKATTLD-----------VSPK 138

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
           +VQP  +++             E  + A A+PKYRHEFYQKP+EVVVT+FAKG   +N+T
Sbjct: 139 DVQPDKDLT-------------EQPIVAVAKPKYRHEFYQKPDEVVVTIFAKGASKENIT 185

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSI+VPGE+AY FQPRLFGKII ++CRYEVLSTK+EIRL KAEPI W+SLE
Sbjct: 186 VDFGEQILSVSINVPGEDAYTFQPRLFGKIISSRCRYEVLSTKIEIRLGKAEPIHWNSLE 245

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           F++   V QR N  SV GS RPTYPSSKP + DWDKLEAQVKKEEK+EKLDGDAALNKFF
Sbjct: 246 FTREVAVAQRANISSVIGSQRPTYPSSKPKK-DWDKLEAQVKKEEKDEKLDGDAALNKFF 304

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           +EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KKVEGSPPDGME++KWEY
Sbjct: 305 REIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELRKWEY 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62467587|gb|AAX83943.1| Sgt1b [Capsicum annuum]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/414 (63%), Positives = 310/414 (74%), Gaps = 46/414 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAISLSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL+P MSKAY RK  ACMKLEEY+TAK ALE GASLAPG+SRFT L+KE        
Sbjct: 61  KAIELDPYMSKAYLRKGLACMKLEEYQTAKAALETGASLAPGESRFTKLMKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                               I+EE GEL    LE    N V+++
Sbjct: 113 ----CDES----------------------------IAEEAGELPNISLEKPSANAVASS 140

Query: 181 NVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNV 239
             + + N++ +  D ++ + +S++ + A   +PKYRHEFYQKPEEVVVT+FAKGIPAKNV
Sbjct: 141 ASELSDNVAIAPRDPQSTVTLSHQESAA---KPKYRHEFYQKPEEVVVTIFAKGIPAKNV 197

Query: 240 TVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSL 299
            VDFGEQILSVSID+PG E Y FQPRLFGKI PAKCRYEV+STK+EIRLAKAEP+ W+SL
Sbjct: 198 VVDFGEQILSVSIDLPGGETYSFQPRLFGKITPAKCRYEVMSTKIEIRLAKAEPLHWTSL 257

Query: 300 EFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKF 359
           ++++  VV  R  P   S +PRP+YPSSK   VDWDKLEAQVKKEEK+EKLDGDAALNKF
Sbjct: 258 DYTREPVVIHR--PVVSSAAPRPSYPSSKLRNVDWDKLEAQVKKEEKDEKLDGDAALNKF 315

Query: 360 FQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 413
           F++IY DADEDTRRAM KSFVESNGTVLSTNWKEVG+KKVEGSPPDGME+KKWE
Sbjct: 316 FRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWE 369

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51511450|gb|AAU04979.1| SGT1 [Solanum tuberosum]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/414 (63%), Positives = 306/414 (73%), Gaps = 46/414 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAITMSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL+P+MSKAY R+  ACMKLEEY+TAK ALE GASLAPG+ RFT LIKE        
Sbjct: 61  KAIELDPTMSKAYLRRGLACMKLEEYQTAKTALETGASLAPGELRFTKLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                               I+EE GEL    ++    +VV+  
Sbjct: 113 ----CDER----------------------------IAEEAGELPNLSVDKTSASVVAPP 140

Query: 181 NVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNV 239
             + + N++ + ED +  +   N++   + A+PKYRHEFYQKPEEVVVT+FAKGIPAKNV
Sbjct: 141 ASELSDNVAIAPEDAQPTV---NQSHQGSAAKPKYRHEFYQKPEEVVVTIFAKGIPAKNV 197

Query: 240 TVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSL 299
            +DFGEQILSVSIDVPGEE Y FQPRLFGKI PAKCRY+V+STK+EIRLAKAE + W+SL
Sbjct: 198 VIDFGEQILSVSIDVPGEETYSFQPRLFGKITPAKCRYDVMSTKIEIRLAKAELLHWTSL 257

Query: 300 EFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKF 359
           E++   VV QR  P   S +PRP+YPSSK   VDWDKLEA VKKEEK+EKLDGDAALNKF
Sbjct: 258 EYTTEPVVVQR--PIVSSAAPRPSYPSSKLRNVDWDKLEAAVKKEEKDEKLDGDAALNKF 315

Query: 360 FQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 413
           F++IY DADEDTRRAM KSFV SNGTVLSTNWKEVG+KKVEGSPPDGME+KKWE
Sbjct: 316 FRDIYQDADEDTRRAMMKSFVGSNGTVLSTNWKEVGTKKVEGSPPDGMELKKWE 369

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725565|ref|NP_001236585.1| SGT1-2 [Glycine max] gi|208964720|gb|ACI31550.1| SGT1-2 [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/414 (62%), Positives = 303/414 (73%), Gaps = 55/414 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AE +ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAEFYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL PS+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKE   L+ + 
Sbjct: 61  KAIELNPSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAE- 119

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
                                         E +   I EE                 +T 
Sbjct: 120 ------------------------------ESYTPPIIEEKA---------------TTE 134

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
           +V P       +DV+   D+  +  +    +PKYRHEFYQK ++VVVT+FAK IP +++T
Sbjct: 135 DVTP-------KDVQQQDDLLEKPTVTV-TKPKYRHEFYQKHDQVVVTIFAKKIPKESIT 186

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSI+V GE+ Y FQPRLFGKIIP+ C+YEVLSTK+EIRLAKAEPI W+SLE
Sbjct: 187 VDFGEQILSVSINVTGEDTYVFQPRLFGKIIPSNCQYEVLSTKIEIRLAKAEPIHWTSLE 246

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           F++  VV QRVN  SV+GS RP+YPSSK TR DWDK+EAQVKKEEK+EKLDGDAALNKFF
Sbjct: 247 FTRDIVVQQRVNASSVTGSQRPSYPSSKQTR-DWDKIEAQVKKEEKDEKLDGDAALNKFF 305

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           +EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KKVEGSPPDGME+KKWEY
Sbjct: 306 REIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29468339|gb|AAO85509.1| SGT1 [Nicotiana benthamiana]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/414 (64%), Positives = 312/414 (75%), Gaps = 46/414 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI ++P +AELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAIAMTPKNAELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL+PSMSKAY RK  ACMKLEEY+TAK ALE GASLAP +SRFT LIKE        
Sbjct: 61  KAIELDPSMSKAYLRKGLACMKLEEYQTAKAALETGASLAPAESRFTKLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                               I+EE GEL  Q ++    NVV+  
Sbjct: 113 ----CDER----------------------------IAEEAGELPNQSVDKTSGNVVAPP 140

Query: 181 NVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNV 239
             +   N++ + +D +  +++S + + A   RPKYRHEFYQKPEEVVVT+FAKGIPAKNV
Sbjct: 141 ASESLDNVAVAPKDAQPTVNLSYQGSAA---RPKYRHEFYQKPEEVVVTIFAKGIPAKNV 197

Query: 240 TVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSL 299
            VDFGEQILSVSIDVPG+E Y FQPRLFGKI PAKCRYEV+STK+EIRLAKAEP+ W+SL
Sbjct: 198 VVDFGEQILSVSIDVPGDETYSFQPRLFGKITPAKCRYEVMSTKIEIRLAKAEPLHWTSL 257

Query: 300 EFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKF 359
           E+++ + V QR  P   S +PRP+YPSSK   VDWDKLEA+VKKEEK+EKLDGDAALNKF
Sbjct: 258 EYTRASAVVQR--PNVSSDAPRPSYPSSKLRHVDWDKLEAEVKKEEKDEKLDGDAALNKF 315

Query: 360 FQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 413
           F++IY DADEDTRRAM KSFVESNGTVLSTNWKEVG+KKVEGSPPDGME+KKWE
Sbjct: 316 FRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWE 369

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238915472|gb|ACR78249.1| SGT1 [Malus hupehensis]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/414 (64%), Positives = 312/414 (75%), Gaps = 54/414 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE++AKE F+DD+FELA DLY+QAI+++P +AEL++DRAQA+IK  N TEAVADAN
Sbjct: 1   MASDLEQRAKEVFMDDHFELAVDLYTQAIDLNPQNAELYSDRAQANIKAGNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIE +PS+ KAY+RK  AC+KLEEY+TAK ALE GA LAP ++RF +LIKE        
Sbjct: 61  KAIEFDPSLYKAYFRKGIACIKLEEYQTAKAALETGAPLAPQETRFASLIKE-------- 112

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
               C                               I+EET  L   P+E        T 
Sbjct: 113 ----CDEK----------------------------IAEETIVLPTPPVEKD-----ITE 135

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
           NV PA      +DVE V + SN+  +A   +PKYRHEFYQKPEEVVVT+FAKGIPAK+V 
Sbjct: 136 NVIPA------KDVEPVSEPSNQVTVAT-VKPKYRHEFYQKPEEVVVTIFAKGIPAKDVH 188

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSVSIDV GE+ +HFQPRLFGKIIP KCR++VLSTKVEIRLAKAEPIQW+SLE
Sbjct: 189 VDFGEQILSVSIDVAGEDTFHFQPRLFGKIIPEKCRFDVLSTKVEIRLAKAEPIQWASLE 248

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           FSK ++VP R + P V G+PRP+YPSSKP R DWDKLEAQVKKEEKEEKLDGDAALNKFF
Sbjct: 249 FSKDSLVPFRGSGP-VVGAPRPSYPSSKPKR-DWDKLEAQVKKEEKEEKLDGDAALNKFF 306

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           Q+IY DADEDTRRAM+KSFVESNGTVLSTN KEVG+KKVEGS PDGMEMKKWE+
Sbjct: 307 QDIYKDADEDTRRAMRKSFVESNGTVLSTNXKEVGNKKVEGSAPDGMEMKKWEF 360

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2128278	358	SGT1B [Arabidopsis thaliana (t	0.545	0.631	0.679	1.8e-118
UNIPROTKB|Q0JL44	367	SGT1 "Protein SGT1 homolog" [O	0.632	0.713	0.591	7.6e-118
DICTYBASE|DDB_G0269292	387	sugt1 "SGS domain-contantaing	0.567	0.607	0.375	2.9e-54
UNIPROTKB|Q2KIK0	338	SUGT1 "Suppressor of G2 allele	0.471	0.576	0.425	2.9e-52
UNIPROTKB|Q9Y2Z0	365	SUGT1 "Suppressor of G2 allele	0.471	0.534	0.43	3.3e-51
MGI|MGI:1915205	336	Sugt1 "SGT1, suppressor of G2	0.497	0.613	0.393	6e-50
RGD|1307550	336	Sugt1 "SGT1, suppressor of G2	0.495	0.610	0.404	6e-50
ZFIN|ZDB-GENE-041114-56	322	sgut1 "SGT1, suppressor of G2	0.521	0.670	0.400	7.7e-48
CGD|CAL0004941	413	SGT1 [Candida albicans (taxid:	0.550	0.552	0.351	4.6e-40
UNIPROTKB|Q59X42	413	CaO19.11570 "Putative uncharac	0.550	0.552	0.351	4.6e-40

TAIR|locus:2128278 SGT1B [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
 Identities = 159/234 (67%), Positives = 182/234 (77%)

Query:   184 PATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDF 243
             P+   SST  + T  D       AAPA+P +RHEFYQKPEE VVT+FAK +P +NVTV+F
Sbjct:   130 PSLPSSSTTPLATEADAPPVPIPAAPAKPMFRHEFYQKPEEAVVTIFAKKVPKENVTVEF 189

Query:   244 GEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 303
             GEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVLSTKVEIRLAKAE I W+SLE+ K
Sbjct:   190 GEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRLAKAEIITWASLEYGK 249

Query:   304 G-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFF 360
             G +V+P+    P+VS   S RP YPSSKP + DWDKLEA+V        LDGDAA+NKFF
Sbjct:   250 GQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKLEAEVKKQEKDEKLDGDAAMNKFF 304

Query:   361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
              +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+KKVE +PPDGME+KKWEY
Sbjct:   305 SDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVESTPPDGMELKKWEY 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:2000072 "regulation of defense response to fungus, incompatible interaction" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=TAS

GO:0030163 "protein catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q0JL44 SGT1 "Protein SGT1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 785 (281.4 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 159/269 (59%), Positives = 193/269 (71%)

Query:   149 FSEGFCLF--ISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAM 206
             F+ G   F  + +E  E   + L   P          P+   S  E+ +   ++ N   M
Sbjct:   103 FASGDSRFTRLMKECDERIAEELSEVPVKKAEDGAAAPSV-ASFVEEKDDAANMDNTPPM 161

Query:   207 AAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRL 266
                 +PKYRH+FY    EVV+T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRL
Sbjct:   162 VE-VKPKYRHDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRL 220

Query:   267 FGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGA-VVPQRVNPPSVSGSPRPTYP 325
             F KIIP K RY+VLSTKVEIRLAKAE I W+SL++ K    VPQ++ PP+ S   RP+YP
Sbjct:   221 FSKIIPEKSRYQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYP 279

Query:   326 SSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGT 385
             SSK ++ DWDKLEA+V        L+GDAALNKFF++IY+DADED RRAM KSFVESNGT
Sbjct:   280 SSK-SKKDWDKLEAEVKKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGT 338

Query:   386 VLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
             VLSTNWK+VGSKKVEGSPPDGME+KKWEY
Sbjct:   339 VLSTNWKDVGSKKVEGSPPDGMELKKWEY 367

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

DICTYBASE|DDB_G0269292 sugt1 "SGS domain-contantaing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 395 (144.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 93/248 (37%), Positives = 133/248 (53%)

Query:   168 PLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARP-KYRHEFYQKPEEVV 226
             P  +  T   + NN     N ++  +  T  D S    +  P+   K RHE+YQ    VV
Sbjct:   150 PTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTD-STTTKLPIPSSGNKVRHEWYQTETHVV 208

Query:   227 VTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI 286
             +T+FAK + A N  ++   + +++S  +     + F+  LF  I+         STKVEI
Sbjct:   209 LTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEMDLFDPIVDKDSTIHYYSTKVEI 268

Query:   287 RLAKAEPIQWSSLEFS-KGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXX 345
             ++ K+  I+W +LEF+ K   V        +S SP    PS   ++ DWDKL  +     
Sbjct:   269 KMKKSRAIKWDTLEFTDKSGPVGLM---DQISSSP--AVPSPYASKKDWDKLPNEPEEK- 322

Query:   346 XXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPD 405
                 L+GD ALNK F++I++   ED +RAM KSF ES GTVLSTNW EVGSKKV G PP 
Sbjct:   323 ----LEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESGGTVLSTNWDEVGSKKVVGEPPK 378

Query:   406 GMEMKKWE 413
             G+E K++E
Sbjct:   379 GLEFKQYE 386

GO:0003674 "molecular_function" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q2KIK0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Bos taurus (taxid:9913)]

 Score = 427 (155.4 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
 Identities = 85/200 (42%), Positives = 125/200 (62%)

Query:   213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
             K ++++YQ   +V++T+  K +   +V V+F E+ LS  + +P  + Y  + RL   IIP
Sbjct:   144 KIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIP 203

Query:   273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 332
              +  ++VLSTK+EI++ K E ++W  LE  +G V P   NP       +  YPSS     
Sbjct:   204 EQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-P---NPKPFIADVKNLYPSSSHYTR 258

Query:   333 DWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 392
             +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW 
Sbjct:   259 NWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWS 318

Query:   393 EVGSKKVEGSPPDGMEMKKW 412
             +VG +KVE +PPD ME KK+
Sbjct:   319 DVGKRKVEINPPDDMEWKKY 338

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y2Z0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Homo sapiens (taxid:9606)]

 Score = 431 (156.8 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 86/200 (43%), Positives = 125/200 (62%)

Query:   213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
             K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct:   171 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 230

Query:   273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 332
              +  ++VLSTK+EI+L K E ++W  LE  +G V P    P       +  YPSS P   
Sbjct:   231 EQSTFKVLSTKIEIKLKKPEAVRWEKLE-GQGDV-P---TPKQFVADVKNLYPSSSPYTR 285

Query:   333 DWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 392
             +WDKL  ++        L+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW 
Sbjct:   286 NWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWS 345

Query:   393 EVGSKKVEGSPPDGMEMKKW 412
             +VG +KVE +PPD ME KK+
Sbjct:   346 DVGKRKVEINPPDDMEWKKY 365

GO:0005634 "nucleus" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

MGI|MGI:1915205 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 420 (152.9 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 83/211 (39%), Positives = 126/211 (59%)

Query:   202 NEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYH 261
             +E + +   + K ++++YQ    V++T+  K +   +V V F E+ LS  + +P  E Y 
Sbjct:   131 SEVSASQRTQSKIKYDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYS 190

Query:   262 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPR 321
              + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G        P   +   +
Sbjct:   191 LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQG----DEPTPKQFTADVK 245

Query:   322 PTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVE 381
               YPSS     +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+E
Sbjct:   246 NMYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFME 305

Query:   382 SNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
             S GTVLSTNW +VG +KVE +PPD ME K++
Sbjct:   306 SGGTVLSTNWSDVGKRKVEINPPDDMEWKQY 336

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1307550 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 420 (152.9 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 85/210 (40%), Positives = 127/210 (60%)

Query:   203 EAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHF 262
             E + +   + K ++++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    
Sbjct:   132 EVSASQRTQSKIKYDWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSL 191

Query:   263 QPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRP 322
             + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V P    P   +   + 
Sbjct:   192 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-PA---PKQFTADVKN 246

Query:   323 TYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVES 382
              YPSS     +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES
Sbjct:   247 MYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMES 306

Query:   383 NGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
              GTVLSTNW +VG +KVE +PPD ME K++
Sbjct:   307 GGTVLSTNWSDVGKRKVEINPPDDMEWKQY 336

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-041114-56 sgut1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 93/232 (40%), Positives = 129/232 (55%)

Query:   189 SSTEDVETVMD-VSNEAAMAAPARPK-------YRHEFYQKPEEVVVTVFAKGIPAKNVT 240
             SS E+ +T M     E A   P +          +H++YQ   +V VT+  K    + V 
Sbjct:    99 SSVEEFQTWMQHCETEMATHIPNKTSDLQTTTHVKHDWYQTESQVAVTIMVKNAKKEGVI 158

Query:   241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
             V FGE+ L+  + +P  E Y  +  L   I+P +  Y++LSTK+EI++ K E IQW  L+
Sbjct:   159 VSFGERELTAVVKLPSGEDYCLKVHLLHPIVPQQSTYKILSTKIEIKMKKTEAIQWEKLQ 218

Query:   301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFF 360
                G      V   + S      YPSS     +WDKL  ++        L+GDAALNK F
Sbjct:   219 ---GEETLSNVKHFTAS-----QYPSSSHYTRNWDKLVGEIKEEEKKENLEGDAALNKLF 270

Query:   361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
             Q+IY+D  +D RRAM KSF+ES GTVLSTNW +VG +KVE +PPD +E KK+
Sbjct:   271 QQIYSDGSDDVRRAMNKSFMESGGTVLSTNWIDVGKRKVEMNPPDDVEWKKY 322

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004941 SGT1 [Candida albicans (taxid:5476)]

 Score = 376 (137.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:   174 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 233
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   234 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 291
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   292 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 351
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   352 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 411
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   412 WE 413
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0051382 "kinetochore assembly" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

UNIPROTKB|Q59X42 CaO19.11570 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 376 (137.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:   174 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 233
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   234 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 291
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   292 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 351
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   352 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 411
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   412 WE 413
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JL44	SGT1_ORYSJ	No assigned EC number	0.5893	0.8719	0.9836	yes	no
Q9SUR9	SGT1A_ARATH	No assigned EC number	0.5827	0.8333	0.9857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.0
pfam05002	78	pfam05002, SGS, SGS domain	6e-35
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	2e-32
COG5091	368	COG5091, SGT1, Suppressor of G2 allele of skp1 and	1e-31
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	1e-21
pfam04969	78	pfam04969, CS, CS domain	8e-21
cd06489	84	cd06489, p23_CS_hSgt1_like, p23_like domain simila	8e-19
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-16
cd06488	87	cd06488, p23_melusin_like, p23_like domain similar	1e-14
cd06468	92	cd06468, p23_CacyBP, p23_like domain found in prot	5e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-09
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	5e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	6e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-04
pfam08959	288	pfam08959, DUF1872, Domain of unknown function (DU	5e-04
cd06490	87	cd06490, p23_NCB5OR, p23_like domain found in NAD(	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  586 bits (1513), Expect = 0.0
 Identities = 261/414 (63%), Positives = 297/414 (71%), Gaps = 58/414 (14%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA DLE KAKEAF+DD F LA DLY+QAI++ PN+AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN 120
           +AIEL+PS++KAY RK TACMKLEEY+TAK ALEKGASLAPGDSRFT LIKE        
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK---- 116

Query: 121 AVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
                                               I+EE  +L +      P       
Sbjct: 117 ------------------------------------IAEEEKDLVQPVPSDLP------- 133

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
                    S+     V +      +  P++PKYRHEFYQKPEEVVVTVFAKG+PA+NV 
Sbjct: 134 ---------SSVTAPPVEEADA-TPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVN 183

Query: 241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           VDFGEQILSV I+VPGE+AYH QPRLFGKIIP KC+YEVLSTK+EIRLAKAEPI W+SLE
Sbjct: 184 VDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEPITWASLE 243

Query: 301 FSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 360
           + KG  V  + N  S   S RP YPSSK  + DWDKLEA+VKKEEK+EKLDGDAALNKFF
Sbjct: 244 YGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFF 302

Query: 361 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 414
           +EIY +ADEDTRRAM KSFVESNGTVLSTNWKEVGSKK+EGSPPDGME+KKWEY
Sbjct: 303 REIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY 356

Length = 356

>gnl|CDD|218373 pfam05002, SGS, SGS domain

 Score =  123 bits (311), Expect = 6e-35
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 332 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 391
            DWDKL     KE+++++ D  AALN FF+++Y D D+DT+RAM KSF ESNGTVLSTNW
Sbjct: 2   KDWDKL----TKEDEDDEEDPSAALNNFFKKLYKDGDDDTKRAMMKSFTESNGTVLSTNW 57

Query: 392 KEVGSKKVEGSPPDGMEMKKW 412
            EVG KKVE  PP+GME KKW
Sbjct: 58  DEVGKKKVETKPPEGMEAKKW 78

This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Length = 78

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score =  117 bits (295), Expect = 2e-32
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 276
           ++YQ    V VT++AK +  ++V V+F EQ LSVSI +PG   Y  +  LFG I P + +
Sbjct: 1   DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSK 60

Query: 277 YEVLSTKVEIRLAKAEPIQWSSLE 300
             VL TKVEI L KAEP  W SLE
Sbjct: 61  VSVLPTKVEITLKKAEPGSWPSLE 84

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

 Score =  123 bits (310), Expect = 1e-31
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 13/240 (5%)

Query: 178 STNNVQPATNISSTEDVETVMD-VSNEAAMAAPA-RPKYRHEFYQKPEEVVVTVFAKGIP 235
           + + ++P  +I +  D  +    +S      AP   PK    +          +F    P
Sbjct: 137 NKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPP 196

Query: 236 AKNVTVD--FGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE 292
             +  V        LS+S               L+ ++ P     +  S +VE+ L K E
Sbjct: 197 VGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256

Query: 293 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDG 352
            ++W  L    G    +         +     P S   + DW +L     ++  +E  + 
Sbjct: 257 MVRWGGLN---GRPADESSRLSDEGKNSDSATPKSSKKQDDWKELM---VEDSGDE--EN 308

Query: 353 DAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 412
            + ++  FQ++Y  AD+DTRRAM KSF ESNGT LST+W +V SK +   PP+GME K W
Sbjct: 309 PSVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368

Length = 368

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRY 277
           +YQ  +EV +T+  K +  K+V V+F  + L+VS+   G + Y  +  LFG I P + ++
Sbjct: 1   WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60

Query: 278 EVLSTKVEIRLAKAEPIQ-WSSLE 300
            V   K+EI L K EP + W  LE
Sbjct: 61  TVEDRKIEITLKKKEPGEWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 85.3 bits (212), Expect = 8e-21
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 215 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 273
           R+++YQ  +EV +T+  KG    K+V V+   + L VSI  PG + Y     LFG I P 
Sbjct: 2   RYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPE 61

Query: 274 KCRYEVLSTKVEIRLAK 290
           +  +++  TKVEI L K
Sbjct: 62  ESSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

 Score = 80.1 bits (198), Expect = 8e-19
 Identities = 31/84 (36%), Positives = 54/84 (64%)

Query: 217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 276
           ++YQ   +VV+T+  K +  ++V+V+F ++ LS ++ +P    Y  +  L   I+P +  
Sbjct: 1   DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSS 60

Query: 277 YEVLSTKVEIRLAKAEPIQWSSLE 300
           Y++LSTK+EI+L K E I+WS LE
Sbjct: 61  YKILSTKIEIKLKKTEAIRWSKLE 84

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup. Length = 84

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
            L       +    ++ A + Y +A+E+ P++A+ + + A A  KL  + EA+ D  +A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           EL+P  +KAY+    A  KL +YE A  A EK   L P
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 215 RHEFYQKPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 273
           RH+++Q    VVV+V+AK   P  +V V+    +L++ I   G + +     L+G I   
Sbjct: 2   RHDWHQTGSHVVVSVYAKNSNPELSV-VEANSTVLTIHIVFEGNKEFQLDIELWGVIDVE 60

Query: 274 KCRYEVLSTKVEIRLAKAEPIQWSSLE 300
           K    +L TKVEI+L KAEP  W+ LE
Sbjct: 61  KSSVNMLPTKVEIKLRKAEPGSWAKLE 87

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains. Length = 87

>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 220 QKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI-DVPGEEAYHFQ-PRLFGKIIPAK 274
           Q  + V + +  KG+   P +N+ V+F E+   + + D+ G+  Y F   RL  KI P K
Sbjct: 8   QSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKN-YRFTINRLLKKIDPEK 66

Query: 275 CRYEVLSTKVEIRLAKAEPIQWSSLE 300
             ++V + ++ I LAK +  +W SL 
Sbjct: 67  SSFKVKTDRIVITLAKKKEKKWESLT 92

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development. Length = 92

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADAN 60
          A  L+      F    ++ A + Y +A+E+ P++AE + + A A +KL +++ EA+ D  
Sbjct: 3  AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 61 RAIELEP 67
          +A+EL+P
Sbjct: 63 KALELDP 69

Length = 69

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-------YHFQPRLFGKI 270
           +YQ  +EVVVTV   G+  +++ V+  + +L++S     EE        +     L   +
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 271 IPAKCRYEVLSTKVEIRLAK 290
            P K +  + +  +EI L K
Sbjct: 61  DPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 48  KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107
           KL ++ EA+    +A+EL+P  + AY+  A A  KL +YE A    EK   L P +++  
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 108 NLI 110
             +
Sbjct: 72  YNL 74

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL-EEYETAKVA 92
           ++AE   +   A  KL ++ EA+    +A+EL+P  ++AY+  A A +KL ++YE A   
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 93  LEKGASLAP 101
           LEK   L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
             A+A+++  ++ EA+A    A+   P  ++A      A ++      A   L    +  
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 101 PGDS 104
           P D 
Sbjct: 62  PDDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +E A + Y +A+E+ P++A+ + +   A  KL  + EA+    +A+EL+P+
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y +AI + PN+  +    A   I+   F EA   A+  ++  P+   A++ KA
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268

Query: 78  TACMKLEEYETAKVALEKGASLAPG 102
               + + YE A+  L+     AP 
Sbjct: 269 LVDFQKKNYEDARETLQDALKSAPE 293

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y QA+ I P S       AQ ++    F EA A  +  +  +P    A   K 
Sbjct: 141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              + L   E A  A  K  +L P + 
Sbjct: 201 DLLLSLGNIELALAAYRKAIALRPNNI 227

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 26  SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
            ++    P   EL A + +  I+  NF EAV+   +A  L P+  +A+     A  +L  
Sbjct: 90  QKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149

Query: 86  YETAKVALEKGASLAPGDSRFTN 108
           ++ A+ A  +   LAP +    N
Sbjct: 150 FDEARRAYRQALELAPNEPSIAN 172

Length = 257

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L++K  +A+ +  F  A  LYS+AIE  P+    +++RA     L ++ + V D   
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTA 185

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETA 89
           A+EL+P  SKA  R+A A   L +Y  A
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADA 213

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|220081 pfam08959, DUF1872, Domain of unknown function (DUF1872)

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 215 RHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQ------------ILSVSIDVPGEEAYH 261
           +++ Y+K  + VVV V+ K I      V F EQ             L +  D      + 
Sbjct: 81  KNDSYEKGTDLVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPDCGPNTHFR 140

Query: 262 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE--FSKGAVVPQRVNPPSVSGS 319
           +Q +L   I P +C Y    ++++I L K +  +W  LE   S+GAV   +V  PS    
Sbjct: 141 WQVKLRNLIEPEQCSYCFTPSRLDITLKKRQSQRWGGLEAPASQGAVGGAKVAVPSGPAP 200

Query: 320 PRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNK 358
              T P S    +   + EA+  ++EK +    D  L+ 
Sbjct: 201 MDKTQPGSSKHSLP-AQEEARAVEKEKAKARAEDTGLDP 238

The CS domain, found in Ubiquitin specific peptidase 19 (USP-19), has no known function. Length = 288

>gnl|CDD|107240 cd06490, p23_NCB5OR, p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 219 YQKPEEVVVTVF--AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKII-PAKC 275
           +Q   EV + V+  +KG PA  V VD  ++ L V I + G+++Y     L  ++  P + 
Sbjct: 4   FQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEI-ILGDKSYLLHLDLSNEVQWPCEV 62

Query: 276 RYEVLSTKVEIRLAKAEPIQWSSL 299
           R    + K+E+ L K EP +W+SL
Sbjct: 63  RISTETGKIELVLKKKEPEKWTSL 86

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases. Length = 87

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAYWR 75
            E AY   +Q ++ +PNS    A R  ASI+L+     EA+A  + A+ L+P    A   
Sbjct: 311 LEQAYQYLNQILKYAPNS--HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
              A + L ++E A   L K   L P +
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELDPEN 396

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	100.0
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	100.0
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	100.0
PF05002	82	SGS: SGS domain ; InterPro: IPR007699 This domain	100.0
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	99.9
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.89
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.86
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.86
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.82
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.78
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.78
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.72
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.69
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.64
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.64
cd06463	84	p23_like Proteins containing this p23_like domain	99.63
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.61
KOG4234	271	consensus TPR repeat-containing protein [General f	99.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.59
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.59
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.47
PRK11189	296	lipoprotein NlpI; Provisional	99.42
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.42
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.29
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.29
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.29
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.28
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.27
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.25
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.25
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
PRK15331	165	chaperone protein SicA; Provisional	99.22
KOG2003	840	consensus TPR repeat-containing protein [General f	99.2
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG1126	638	consensus DNA-binding cell division cycle control	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.18
PRK15359	144	type III secretion system chaperone protein SscB;	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
PRK12370	553	invasion protein regulator; Provisional	99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.15
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.13
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.09
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.08
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.05
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
PRK10803	263	tol-pal system protein YbgF; Provisional	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.02
KOG1125	579	consensus TPR repeat-containing protein [General f	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
KOG2076	895	consensus RNA polymerase III transcription factor	98.99
KOG4555	175	consensus TPR repeat-containing protein [Function	98.98
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.98
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	98.97
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
PF13512	142	TPR_18: Tetratricopeptide repeat	98.94
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.92
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
PLN02789	320	farnesyltranstransferase	98.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.86
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.86
PLN02789	320	farnesyltranstransferase	98.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.84
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.8
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.79
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.7
PF12688	120	TPR_5: Tetratrico peptide repeat	98.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.68
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.66
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.63
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.62
PRK14574	822	hmsH outer membrane protein; Provisional	98.61
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.57
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.57
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.55
KOG1310	758	consensus WD40 repeat protein [General function pr	98.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.54
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.48
PRK11906	458	transcriptional regulator; Provisional	98.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.44
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.4
KOG0553	304	consensus TPR repeat-containing protein [General f	98.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.39
KOG1129	478	consensus TPR repeat-containing protein [General f	98.37
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
KOG2076	895	consensus RNA polymerase III transcription factor	98.33
KOG1129	478	consensus TPR repeat-containing protein [General f	98.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.32
PRK11906	458	transcriptional regulator; Provisional	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.28
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.25
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.24
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.23
KOG1125	579	consensus TPR repeat-containing protein [General f	98.23
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.23
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.21
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.19
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.17
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.16
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.16
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.13
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.11
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.08
PRK15331	165	chaperone protein SicA; Provisional	98.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.02
KOG4234	271	consensus TPR repeat-containing protein [General f	98.02
PRK10803	263	tol-pal system protein YbgF; Provisional	97.99
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.98
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.98
PF12688	120	TPR_5: Tetratrico peptide repeat	97.98
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.95
KOG2003	840	consensus TPR repeat-containing protein [General f	97.95
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.95
PF13431	34	TPR_17: Tetratricopeptide repeat	97.94
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.94
PF13428	44	TPR_14: Tetratricopeptide repeat	97.92
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.87
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.84
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.84
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.79
PF13431	34	TPR_17: Tetratricopeptide repeat	97.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.77
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.73
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.71
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.69
PF13428	44	TPR_14: Tetratricopeptide repeat	97.66
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.65
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.65
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.61
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.6
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.56
PF13512	142	TPR_18: Tetratricopeptide repeat	97.53
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.52
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.51
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.47
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.43
PRK10941	269	hypothetical protein; Provisional	97.41
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.36
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.33
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.25
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.25
KOG2471	696	consensus TPR repeat-containing protein [General f	97.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.16
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.12
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.11
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.1
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.1
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.03
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.03
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.98
KOG3364	149	consensus Membrane protein involved in organellar	96.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.96
KOG4379	596	consensus Uncharacterized conserved protein (tumor	96.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.91
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.83
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.81
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.77
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.76
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.75
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.66
PRK10941	269	hypothetical protein; Provisional	96.65
KOG4555	175	consensus TPR repeat-containing protein [Function	96.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.64
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.52
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.47
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.46
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.42
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.29
PRK04841	903	transcriptional regulator MalT; Provisional	96.28
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.28
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.25
KOG1586	288	consensus Protein required for fusion of vesicles	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.22
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.15
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.14
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.06
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.06
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.99
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	95.97
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.94
PRK04841	903	transcriptional regulator MalT; Provisional	95.93
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.93
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	95.91
PLN03218	1060	maturation of RBCL 1; Provisional	95.89
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.87
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.85
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.74
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	95.72
PLN03218	1060	maturation of RBCL 1; Provisional	95.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.7
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.69
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	95.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.65
KOG2471	696	consensus TPR repeat-containing protein [General f	95.59
KOG1585	308	consensus Protein required for fusion of vesicles	95.52
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.43
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	95.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.37
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.35
COG2912	269	Uncharacterized conserved protein [Function unknow	95.21
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.04
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	95.02
PLN03077	857	Protein ECB2; Provisional	94.93
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.87
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	94.81
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.72
KOG1585	308	consensus Protein required for fusion of vesicles	94.51
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.49
PLN03077	857	Protein ECB2; Provisional	94.41
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.31
PRK10743	137	heat shock protein IbpA; Provisional	94.3
KOG1586	288	consensus Protein required for fusion of vesicles	94.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.99
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.96
COG2912	269	Uncharacterized conserved protein [Function unknow	93.84
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	93.83
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.65
KOG3364	149	consensus Membrane protein involved in organellar	93.49
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.34
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	93.27
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.26
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.95
PRK11597	142	heat shock chaperone IbpB; Provisional	92.93
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.93
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.86
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.73
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.7
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.4
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	92.39
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.09
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.07
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.04
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.81
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.68
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	91.45
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.2
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.06
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	90.97
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.82
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.77
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.56
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.46
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.39
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.05
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	90.02
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.73
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.5
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.3
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.3
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.67
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.6
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.48
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.42
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.11
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.96
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.85
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.82
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	86.8
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.73
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.58
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.54
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.33
KOG2422	665	consensus Uncharacterized conserved protein [Funct	86.29
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.26
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.19
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.96
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.9
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.64
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	85.28
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.82
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.79
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	84.57
COG5191	435	Uncharacterized conserved protein, contains HAT (H	84.28
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	84.27
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	84.12
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.94
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.31
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.91
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	82.86
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.66
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	82.34
COG3947	361	Response regulator containing CheY-like receiver a	82.27
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.1
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	81.98
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.47
COG4941	415	Predicted RNA polymerase sigma factor containing a	81.42
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.01
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.9
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.81
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	80.56
KOG0529	421	consensus Protein geranylgeranyltransferase type I	80.21
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.17

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=100.00  E-value=5.4e-88  Score=668.85  Aligned_cols=356  Identities=72%  Similarity=1.103  Sum_probs=300.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ||..+..+|+.+|..|+|++|+.+|++||+++|+++.+|++||.+|+++|+|++|+.++++|+.++|.++.+|+++|.+|
T Consensus         1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhhcccc
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEE  160 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  160 (414)
                      +.+|+|++|+.+|++++.++|++..+..|+.+|...+.....                                 .....
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~---------------------------------~~~~~  127 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEK---------------------------------DLVQP  127 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhc---------------------------------ccccc
Confidence            999999999999999999999999999999999833311000                                 00000


Q ss_pred             cccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCCCCCCCccccccCCCeEEEEEEeCCCCCCceE
Q 015029          161 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT  240 (414)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~  240 (414)
                           . ...++  ..   ....+.+.            . ...+..++..+++||||||++++|+|+||+++++++++.
T Consensus       128 -----~-~~~~~--~~---~~~~~~~~------------~-~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~  183 (356)
T PLN03088        128 -----V-PSDLP--SS---VTAPPVEE------------A-DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVN  183 (356)
T ss_pred             -----c-ccccc--cc---cccccccc------------c-ccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcE
Confidence                 0 00000  00   00000000            0 011122334568999999999999999999999999999


Q ss_pred             EEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCCccccCCCccCCcccCCCCCCCCC
Q 015029          241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSP  320 (414)
Q Consensus       241 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~  320 (414)
                      |+|++++|+|+|..+++..|.|.++||++|+|+.|+|+|+++||||+|+|+++.+|++|+..+..........+. ....
T Consensus       184 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~  262 (356)
T PLN03088        184 VDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQ  262 (356)
T ss_pred             EEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecCCCCCccccccCCccccccCCCCCc-Cccc
Confidence            999999999999888888999999999999999999999999999999999999999999875433222111111 1245


Q ss_pred             CCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccCcccc
Q 015029          321 RPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE  400 (414)
Q Consensus       321 ~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~~~~~  400 (414)
                      .|+||||+++++|||||+.++++|+++|+++|+++||+||||||+||||||||||||||+|||||||||||+|||+++||
T Consensus       263 ~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e  342 (356)
T PLN03088        263 RPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIE  342 (356)
T ss_pred             CCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccc
Confidence            68999998878999999999888888888899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccCC
Q 015029          401 GSPPDGMEMKKWEY  414 (414)
Q Consensus       401 ~~~p~g~e~k~~~~  414 (414)
                      ++||+|||+|||++
T Consensus       343 ~~pp~g~e~k~~~~  356 (356)
T PLN03088        343 GSPPDGMELKKWEY  356 (356)
T ss_pred             cCCCCCCccccCCC
Confidence            99999999999985

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-69  Score=458.39  Aligned_cols=195  Identities=59%  Similarity=0.944  Sum_probs=175.6

Q ss_pred             CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029          212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  291 (414)
Q Consensus       212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  291 (414)
                      +++||||||+.+.|+|+||.++|+.++|.|.|+++.|++.+..++|..|.|.++|||+|+|+.|+|+++++||||+|.|.
T Consensus         2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~   81 (196)
T KOG1309|consen    2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA   81 (196)
T ss_pred             CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHH
Q 015029          292 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT  371 (414)
Q Consensus       292 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~  371 (414)
                      +..+|..|++.....+......    +....+||+|+. ++|||+++.+.+++|++++.+ +++||+|||+||.+|||||
T Consensus        82 ~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv  155 (196)
T KOG1309|consen   82 EIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV  155 (196)
T ss_pred             cchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence            8899999996432221111111    122348999977 889999999988888888777 8999999999999999999


Q ss_pred             HHHHHhhhhhcCCeeeecCcccccCcccccCCCCCcccccc
Q 015029          372 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  412 (414)
Q Consensus       372 kram~KS~~eS~gt~lstnw~~v~~~~~~~~~p~g~e~k~~  412 (414)
                      ||||||||+|||||||||||+|||+++||++||+|||+|||
T Consensus       156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~  196 (196)
T KOG1309|consen  156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW  196 (196)
T ss_pred             HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence            99999999999999999999999999999999999999999

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=100.00  E-value=1.4e-53  Score=385.32  Aligned_cols=347  Identities=24%  Similarity=0.351  Sum_probs=248.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCC------CHHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPS------MSKA   72 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----------~~~~~Al~~~~~Ai~l~p~------~~~a   72 (414)
                      |..++...+.-.|+.+|...+.-.|.|..++...+.|+.++          .....|+..++.|+-+...      ...+
T Consensus         2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~   81 (368)
T COG5091           2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV   81 (368)
T ss_pred             ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence            44677788888999999999999999976666666666554          3567899999999977542      5678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchh
Q 015029           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEG  152 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  152 (414)
                      .|+++++||.+.+|+.|..||..|+.+ ..+..+..|..++...++.....+.       .  ..+ .-+|+.++-    
T Consensus        82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~-~~~d~L~~We~rLet~L~~~~kkQ~-------~--~Tn-k~~I~~vEs----  146 (368)
T COG5091          82 NFRYFVHFFNIKDYELAQSYFKKAKNL-YVDDTLPLWEDRLETKLNKKNKKQK-------D--STN-KHTIKPVES----  146 (368)
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHhHhhHhhc-------c--ccC-CCCCCchhh----
Confidence            999999999999999999999999998 5566688888777744433222100       0  000 000100000    


Q ss_pred             hhhhcccccccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCC---CCCCCccccccCCCeEEEEE
Q 015029          153 FCLFISEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAP---ARPKYRHEFYQKPEEVVVTV  229 (414)
Q Consensus       153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~~r~dW~Qt~~~V~i~i  229 (414)
                          +..                       ....+..-       ++.+|....++|   ...+++|||.||..++.|.|
T Consensus       147 ----~e~-----------------------~GD~~~~~-------S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifi  192 (368)
T COG5091         147 ----IEN-----------------------RGDNNSSH-------SPISPLKIETAPQESPKMEIAYDFSETSDTAIIFI  192 (368)
T ss_pred             ----hhc-----------------------cCcccccc-------CCCCccccccCcccCccceeeeeccccceeEEEEE
Confidence                000                       00000000       011221111122   23467788888888888888


Q ss_pred             EeCCCCCCceEEEEeeeEEEEEEEcCCCC-eeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCCccccCCCccCC
Q 015029          230 FAKGIPAKNVTVDFGEQILSVSIDVPGEE-AYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVP  308 (414)
Q Consensus       230 ~~k~~~~~~v~v~~~~~~l~v~~~~~~~~-~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~  308 (414)
                      |.+-+..++|.+-++++.|+|++..+.+. .+.+.+.||++|.|+.+++++.+.++|+.|+|.+..+|..|++...... 
T Consensus       193 y~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S-  271 (368)
T COG5091         193 YRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADES-  271 (368)
T ss_pred             ecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccc-
Confidence            88888889999999999999999876554 4556678999999999999999999999999999999999997632110 


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeee
Q 015029          309 QRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLS  388 (414)
Q Consensus       309 ~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~ls  388 (414)
                        ......-.....+-|+|+++++||+++..+.+.|  +|  ++ ..+++|||+||++|||||||||||||+|||||+||
T Consensus       272 --~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~d--Ee--~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLS  344 (368)
T COG5091         272 --SRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGD--EE--NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALS  344 (368)
T ss_pred             --cccccccccccccCCccccccccHHHhhhhhccc--cc--Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceec
Confidence              0000000011234478888999999999762211  11  12 33788999999999999999999999999999999


Q ss_pred             cCcccccCcccccCCCCCcccccc
Q 015029          389 TNWKEVGSKKVEGSPPDGMEMKKW  412 (414)
Q Consensus       389 tnw~~v~~~~~~~~~p~g~e~k~~  412 (414)
                      |||++|++++|++.||+|||.|+|
T Consensus       345 TdW~dVkskt~~t~pPeGMEPK~~  368 (368)
T COG5091         345 TDWDDVKSKTITTEPPEGMEPKHW  368 (368)
T ss_pred             ccHHHhhcCceecCCCCCCCCCCC
Confidence            999999999999999999999999

>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins

Probab=100.00  E-value=1.4e-41  Score=258.49  Aligned_cols=81  Identities=58%  Similarity=0.998  Sum_probs=31.9

Q ss_pred             CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccCcccccCCCCCccccc
Q 015029          332 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK  411 (414)
Q Consensus       332 ~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~~~~~~~~p~g~e~k~  411 (414)
                      +||++|......++++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++||++||+|||+||
T Consensus         2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~   81 (82)
T PF05002_consen    2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK   81 (82)
T ss_dssp             ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred             CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence            58999986644445555566777899999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 015029          412 W  412 (414)
Q Consensus       412 ~  412 (414)
                      |
T Consensus        82 ~   82 (82)
T PF05002_consen   82 W   82 (82)
T ss_dssp             -
T ss_pred             C
Confidence            9

Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=99.90  E-value=7.2e-24  Score=180.85  Aligned_cols=137  Identities=22%  Similarity=0.330  Sum_probs=116.5

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecc-cccccccCCcceEEEeCcEEEEEEeeCCCC
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEPI  294 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~  294 (414)
                      |.|.|++..|.++|.+.||+.++|+|+|++.+|.+.+....|++|.+.+ +|+++|.|+.|+.+|.+..|-|.++|.+..
T Consensus        77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~  156 (224)
T KOG3260|consen   77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENT  156 (224)
T ss_pred             cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcc
Confidence            9999999999999999999999999999999999999988999999999 799999999999999999999999888889


Q ss_pred             CCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHH
Q 015029          295 QWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRA  374 (414)
Q Consensus       295 ~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kra  374 (414)
                      +|.-|..-.....          ....|+|-                      -+.|+.+++|++|++||.+||+||||.
T Consensus       157 rwd~Lt~~~Ke~K----------ek~kpsl~----------------------ke~DP~~glmnvmKk~YeDGD~~mK~t  204 (224)
T KOG3260|consen  157 RWDYLTQVEKECK----------EKEKPSLD----------------------KETDPSEGLMNVMKKIYEDGDDDMKQT  204 (224)
T ss_pred             cchHHHHHHHHHh----------hccCcccc----------------------ccCChHHHHHHHHHHHHhcccHHHHHH
Confidence            9999874321110          01122221                      112355689999999999999999999


Q ss_pred             HHhhhhhcCC
Q 015029          375 MKKSFVESNG  384 (414)
Q Consensus       375 m~KS~~eS~g  384 (414)
                      |.|.|+||.-
T Consensus       205 IaKAWtesr~  214 (224)
T KOG3260|consen  205 IAKAWTESRE  214 (224)
T ss_pred             HHHHHHHhhh
Confidence            9999999973

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.89  E-value=3e-23  Score=163.99  Aligned_cols=87  Identities=36%  Similarity=0.566  Sum_probs=83.0

Q ss_pred             CccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  293 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  293 (414)
                      +||||||++++|+|+||+++++++++.|+|++++|+|.+..++++.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus         1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488           1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence            69999999999999999999999999999999999998877778889999999999999999999999999999999998


Q ss_pred             CCCCccc
Q 015029          294 IQWSSLE  300 (414)
Q Consensus       294 ~~W~~L~  300 (414)
                      ++|++|+
T Consensus        81 ~~W~~Le   87 (87)
T cd06488          81 GSWAKLE   87 (87)
T ss_pred             CcCccCC
Confidence            9999996

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.86  E-value=1e-21  Score=160.10  Aligned_cols=102  Identities=19%  Similarity=0.338  Sum_probs=90.4

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  293 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  293 (414)
                      .++||||.+.|+|||+++++  .+++|+|++++|+|+....+|..|.++|+||++|+|++|+|++++++|||+|+|++. 
T Consensus         3 ~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~   80 (106)
T cd00237           3 KTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG   80 (106)
T ss_pred             cceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence            47999999999999999974  799999999999999865567789999999999999999999999999999999975 


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 015029          294 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  339 (414)
Q Consensus       294 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~  339 (414)
                      .+|++|+++                ..+++|.     ++|||||.+
T Consensus        81 ~~WprL~k~----------------~~k~~~l-----k~DfdkW~D  105 (106)
T cd00237          81 VAWPRLTKE----------------KAKPNWL-----SVDFDNWRD  105 (106)
T ss_pred             CCCchhhcC----------------CCCCCcE-----ECcchhccC
Confidence            589999987                3446666     789999984

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.86  E-value=2.2e-21  Score=152.46  Aligned_cols=84  Identities=37%  Similarity=0.757  Sum_probs=80.5

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCC
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  296 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  296 (414)
                      ||||+++.|+|+|++++++++++.|+|++++|+|.+...++..|.+.++||++|+|++|+|+++++||||+|+|+++.+|
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W   80 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999987777789999999999999999999999999999999988999


Q ss_pred             Cccc
Q 015029          297 SSLE  300 (414)
Q Consensus       297 ~~L~  300 (414)
                      ++|+
T Consensus        81 ~~Le   84 (84)
T cd06489          81 SKLE   84 (84)
T ss_pred             ccCC
Confidence            9996

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.8e-20  Score=174.73  Aligned_cols=121  Identities=30%  Similarity=0.458  Sum_probs=116.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      .|+.++.+|+.+++.++|.+|+..|++||.++|.|+.+|++||.+|.++|.|+.|+.||+.||.+||.+.++|.|+|.+|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      +.+|+|.+|++.|+++++++|+|..+...|..++..+++..
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999997776655

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.82  E-value=3.8e-20  Score=152.49  Aligned_cols=87  Identities=23%  Similarity=0.360  Sum_probs=80.2

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-CCCeeeecccccccccCCcceEEEeCcEEEEEEeeCC-
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE-  292 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~-  292 (414)
                      -|+||||.+.|+|+|+++++  +++.|+|++++|+|++... ++..|.+.++||++|+|++|+|++.+++|+|+|+|++ 
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~   79 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA   79 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence            48999999999999999988  8899999999999998654 5677999999999999999999999999999999999 


Q ss_pred             CCCCCccccCC
Q 015029          293 PIQWSSLEFSK  303 (414)
Q Consensus       293 ~~~W~~L~~~~  303 (414)
                      +.+|++|++.+
T Consensus        80 ~~~W~~L~~~~   90 (108)
T cd06465          80 GEYWPRLTKEK   90 (108)
T ss_pred             CCCCcccccCC
Confidence            78999999763

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.78  E-value=8.8e-19  Score=140.12  Aligned_cols=86  Identities=27%  Similarity=0.466  Sum_probs=80.2

Q ss_pred             ccccccCCCeEEEEEEeCCCCC---CceEEEEeeeEEEEEEEcCCCCeeeeccc-ccccccCCcceEEEeCcEEEEEEee
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK  290 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~y~~~~~-L~~~I~p~~s~~~v~~~kiei~L~K  290 (414)
                      +|+|+|+.+.|+|+|+++++..   +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K   82 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK   82 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence            6999999999999999999876   89999999999999987767788999995 9999999999999999999999999


Q ss_pred             CCCCCCCccc
Q 015029          291 AEPIQWSSLE  300 (414)
Q Consensus       291 ~~~~~W~~L~  300 (414)
                      +++.+|++|+
T Consensus        83 ~~~~~W~~L~   92 (92)
T cd06468          83 KKEKKWESLT   92 (92)
T ss_pred             CCCCccCccC
Confidence            9889999984

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.78  E-value=8.9e-19  Score=137.53  Aligned_cols=84  Identities=49%  Similarity=0.782  Sum_probs=79.2

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCC
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  296 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  296 (414)
                      ||||+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|++++.|
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W   80 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999876656679999999999999999999999999999999998999


Q ss_pred             Cccc
Q 015029          297 SSLE  300 (414)
Q Consensus       297 ~~L~  300 (414)
                      ++|+
T Consensus        81 ~~L~   84 (84)
T cd06466          81 PSLE   84 (84)
T ss_pred             ccCC
Confidence            9985

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.77  E-value=2.2e-18  Score=135.99  Aligned_cols=83  Identities=29%  Similarity=0.448  Sum_probs=72.7

Q ss_pred             cccccCCCeEEEEEEeCC--CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc--EEEEEEeeC
Q 015029          216 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST--KVEIRLAKA  291 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~--kiei~L~K~  291 (414)
                      |||||++++|+|+||+|+  .+..++.+.+..++|++++..+ ++.|.++++||++|+|+. ++++.+.  ||||+|+|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~   78 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK   78 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence            799999999999999885  5566777888888999998877 777999999999998664 8999854  999999999


Q ss_pred             CCCCCCccc
Q 015029          292 EPIQWSSLE  300 (414)
Q Consensus       292 ~~~~W~~L~  300 (414)
                      ++..|++|.
T Consensus        79 e~~~W~~Lg   87 (87)
T cd06490          79 EPEKWTSLG   87 (87)
T ss_pred             CCCccccCc
Confidence            999999983

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=4.8e-17  Score=161.51  Aligned_cols=116  Identities=32%  Similarity=0.503  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+..+..|+.+|+.|+|..|+.+|++||..+|+++.+|.|||.||.+++++..|+.|++.+|+++|.+.++|+|.|.|++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      .+.+|+.|+++|+.+++++|++..+..++.+|..++
T Consensus       438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999665

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.6e-17  Score=142.12  Aligned_cols=104  Identities=24%  Similarity=0.321  Sum_probs=90.6

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  293 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  293 (414)
                      .-|+|+.+.|+|+|.+.  +..++.|.+++..|.|+... .++..|...|+||++|+|++|+++++++.|.++|+|++. 
T Consensus        10 v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~~   87 (180)
T KOG3158|consen   10 VKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKELG   87 (180)
T ss_pred             chhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEccccc
Confidence            48999999999999998  44688999999989998765 566668888999999999999999999999999999987 


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHh
Q 015029          294 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVK  342 (414)
Q Consensus       294 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~  342 (414)
                      .+||+|++.                ..+++|.     ++|||||.++.+
T Consensus        88 ~~WprLtke----------------K~K~hwL-----kvDFdkW~Dede  115 (180)
T KOG3158|consen   88 EYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDE  115 (180)
T ss_pred             cccchhhhc----------------ccccceE-----Ecchhhcccccc
Confidence            899999987                4578888     679999997643

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.64  E-value=8.3e-16  Score=118.89  Aligned_cols=78  Identities=26%  Similarity=0.346  Sum_probs=72.8

Q ss_pred             cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCCCCCC
Q 015029          218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS  297 (414)
Q Consensus       218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~  297 (414)
                      |+|+++.|+|+|+++|+.++++.|+++++.|.|+.     ..|.+.++||++|+|+.|++++.+++|+|+|.|+++.+|+
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~   75 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE   75 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence            99999999999999999999999999998877754     3599999999999999999999999999999999889999


Q ss_pred             ccc
Q 015029          298 SLE  300 (414)
Q Consensus       298 ~L~  300 (414)
                      +|+
T Consensus        76 ~L~   78 (78)
T cd06469          76 ALC   78 (78)
T ss_pred             ccC
Confidence            996

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.64  E-value=9.1e-16  Score=118.54  Aligned_cols=77  Identities=38%  Similarity=0.581  Sum_probs=69.9

Q ss_pred             CccccccCCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  290 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  290 (414)
                      .||+|+|+.+.|+|+|++++..  ++++.|+|++++|+|.+...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            4899999999999999997764  7999999999999999887766889999999999999999999999999999998

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.63  E-value=2.2e-15  Score=117.59  Aligned_cols=83  Identities=37%  Similarity=0.636  Sum_probs=78.0

Q ss_pred             cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC-CCC
Q 015029          218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW  296 (414)
Q Consensus       218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W  296 (414)
                      |+|+++.|+|+|+++++.++++.|+|++++|+|.+...++..|.+.++|+++|+|+.|++++.+++|+|+|.|+.+ .+|
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W   80 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW   80 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence            9999999999999999999999999999999999876556789999999999999999999999999999999988 899


Q ss_pred             Cccc
Q 015029          297 SSLE  300 (414)
Q Consensus       297 ~~L~  300 (414)
                      ++|+
T Consensus        81 ~~l~   84 (84)
T cd06463          81 PRLE   84 (84)
T ss_pred             cccC
Confidence            9984

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.7e-15  Score=150.61  Aligned_cols=114  Identities=30%  Similarity=0.492  Sum_probs=112.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ||..+..+||.+|..|+|+.|+.+|+.||.++|.|..+|.||+.||.++++|++|+.|..+.++++|+.+++|+|+|.++
T Consensus         1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +.+|+|++|+..|..+++++|+|..+...+..+.
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999998888

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=2e-14  Score=124.66  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..++..|+|++|+..|.+++..+|.+..+++++|.++..+|++++|+.+|.+|+.++|.++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |++++|+..|.+++.++|++......++.+.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            9999999999999999999998887777766

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.61  E-value=3.4e-15  Score=117.45  Aligned_cols=81  Identities=15%  Similarity=0.331  Sum_probs=71.0

Q ss_pred             cccccCCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeCCC
Q 015029          216 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP  293 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~  293 (414)
                      |+|+||.+.|+|+|++ +++..+++.|+|++++|.|.+.  ++. ..+..+||+.|+|++|+|++... +|+|+|.|+++
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~-~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQA-PLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCC-eEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence            8999999999999999 5888999999999999999874  233 34677999999999999999755 79999999986


Q ss_pred             -CCCCcc
Q 015029          294 -IQWSSL  299 (414)
Q Consensus       294 -~~W~~L  299 (414)
                       .+|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06493          78 GPTWPEL   84 (85)
T ss_pred             Ccccccc
Confidence             599998

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=1.1e-14  Score=128.51  Aligned_cols=122  Identities=31%  Similarity=0.432  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      |..++..|+.+|..|+|++|...|..||.+.|..     ..+|.|||.|+++++.++.|+.+|.+||+|+|.+.+|+.|+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            4678899999999999999999999999999986     57999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        77 g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      |.+|..+..|++|++.|.+.++++|...+++..+.++...++.+...
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999998888887666554443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.60  E-value=2.7e-16  Score=155.07  Aligned_cols=320  Identities=23%  Similarity=0.171  Sum_probs=203.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ||+.+..+|+.+|....|+.|+.+|++||+++|+++.++.+|+.+|++.++|..|+.|+.+||+++|...++|+|+|.++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhhcccc
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEE  160 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  160 (414)
                      ..+++|.+|+..|+....+.|+++.+...+..|+....+..+                               ...+.- 
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f-------------------------------e~ai~~-  130 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF-------------------------------EKAILT-  130 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh-------------------------------hhcccC-
Confidence            999999999999999999999999999999999944332111                               000100 


Q ss_pred             cccccCCCCCCCCCcccccCCCCCCCCCCCccccchhcccccccccCCCCCCCCccccccCCCeEEEEEEeCCCCCCceE
Q 015029          161 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT  240 (414)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~  240 (414)
                      +.+.+..+..+.               ....       ...   + ....-..+++.-.             .++.+.++
T Consensus       131 ~~~d~~s~~~~~---------------~~~~-------~~~---~-i~~~y~g~~le~~-------------kvt~e~vk  171 (476)
T KOG0376|consen  131 PEGDKKSVVEMK---------------IDEE-------DMD---L-IESDYSGPVLEDH-------------KVTLEFVK  171 (476)
T ss_pred             CccCCccccccc---------------cccc-------ccc---c-cccccCCcccccc-------------hhhHHHHH
Confidence            000000000000               0000       000   0 0111111121111             11111211


Q ss_pred             EEEeeeEEEEEEEcCCCCeeeecccccccccCCcce-EEEeCcEEEEEEeeCCC-CCCCccccCCCccC--CcccCCCCC
Q 015029          241 VDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR-YEVLSTKVEIRLAKAEP-IQWSSLEFSKGAVV--PQRVNPPSV  316 (414)
Q Consensus       241 v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~-~~v~~~kiei~L~K~~~-~~W~~L~~~~~~~~--~~~~~~~~~  316 (414)
                      .-+     .+ +  .  ..+.+.-.+.+.|+...+. +++.+.-|+|.   ..+ .+|.-.-....+.-  ...+..   
T Consensus       172 ~~~-----~~-~--~--~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l---  235 (476)
T KOG0376|consen  172 TLM-----EV-F--K--NQKKLPKKYAYSILDLAKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFEL---  235 (476)
T ss_pred             HHH-----Hh-h--h--cccccccccceeeHHHHhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhh---
Confidence            111     00 0  0  1122333344455555444 33455567777   223 34443332211110  000000   


Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHHHhhhhhcCCeeeecCcccccC
Q 015029          317 SGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGS  396 (414)
Q Consensus       317 ~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~gt~lstnw~~v~~  396 (414)
                      . ..+..++.+ -...||..+.....+-.......+....|+||-..+...+++|.+.|-..+-.+.+++..++|-.+  
T Consensus       236 ~-g~Ps~t~~y-lfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~--  311 (476)
T KOG0376|consen  236 N-GLPSETNPY-LFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS--  311 (476)
T ss_pred             c-CCCCCcccc-cccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh--
Confidence            0 111112211 123466655533222222334455567899999999999999999999999999999999999998  


Q ss_pred             cccccCCCCCcccccc
Q 015029          397 KKVEGSPPDGMEMKKW  412 (414)
Q Consensus       397 ~~~~~~~p~g~e~k~~  412 (414)
                       .|..-+|-++....|
T Consensus       312 -~~f~~LPl~~~i~~~  326 (476)
T KOG0376|consen  312 -EVFIWLPLAHLINNK  326 (476)
T ss_pred             -hhhccccchhhhcCc
Confidence             778889999988776

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3e-14  Score=138.36  Aligned_cols=116  Identities=23%  Similarity=0.393  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      |...+..|+.+|+.|+|..|+..|.+|+..-...               ..++.|+|.||+++++|..|+..|++++.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            5567889999999999999999999999864322               5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      |.|.+|+||+|.||..+|+|+.|+..|+++++++|.|..+...+..|.+..
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988444

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.59  E-value=6.8e-15  Score=115.68  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=73.3

Q ss_pred             cccccCCCeEEEEEEeC-CCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC-cEEEEEEeeCCC
Q 015029          216 HEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP  293 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~  293 (414)
                      |+|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++..   ..+.+...||++|+|++|+|++.+ ++|+|+|.|+++
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence            79999999999999774 6788999999999999998752   347788899999999999999999 999999999997


Q ss_pred             -CCCCcc
Q 015029          294 -IQWSSL  299 (414)
Q Consensus       294 -~~W~~L  299 (414)
                       .+|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06467          78 GEWWPSL   84 (85)
T ss_pred             Ccccccc
Confidence             799987

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.56  E-value=9.5e-15  Score=131.64  Aligned_cols=91  Identities=33%  Similarity=0.492  Sum_probs=84.0

Q ss_pred             CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029          212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  290 (414)
Q Consensus       212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  290 (414)
                      .++||||.||+..|+|+||.++..++.-.|+.....|+|.|.. .++..|.++++|++.|++++|++.+..+||||+|+|
T Consensus       213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k  292 (320)
T KOG1667|consen  213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK  292 (320)
T ss_pred             ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence            4789999999999999999999888888899999999999776 466679999999999999999999999999999999


Q ss_pred             CCCCCCCccccC
Q 015029          291 AEPIQWSSLEFS  302 (414)
Q Consensus       291 ~~~~~W~~L~~~  302 (414)
                      ++++.|.+|+..
T Consensus       293 ~ep~sWa~Le~p  304 (320)
T KOG1667|consen  293 AEPGSWARLEFP  304 (320)
T ss_pred             cCCCCcccccCC
Confidence            999999999975

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.53  E-value=3.2e-13  Score=116.63  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.++..|..++..|++++|...|.-++.++|.++..|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|+|++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|+.+.|..+|+.++.+...+++......+++
T Consensus       116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~  147 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAE  147 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence            99999999999999998866665555555555

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.53  E-value=3e-14  Score=134.78  Aligned_cols=114  Identities=27%  Similarity=0.366  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +.+++.+|+.||++|.|++||.+|++++..+|.|+.++.|||.+|+++++|..|..||+.|+.|+....+||.|+|.+.+
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      .+|...+|...|+.+++|.|.+.++...++.+..
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999988888777664

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=1.3e-12  Score=111.22  Aligned_cols=113  Identities=18%  Similarity=0.283  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|+|++|+..|++++..+|.++.++.++|.+|+.+|++.+|+..+++++.++|.++..++.+|.+|..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +|+++.|...|+++++++|++..+.....++..
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999999999988877777763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.47  E-value=2.4e-13  Score=108.12  Aligned_cols=81  Identities=26%  Similarity=0.516  Sum_probs=71.9

Q ss_pred             ccccccCCCeEEEEE-EeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcE-EEEEEeeCC
Q 015029          215 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE  292 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~  292 (414)
                      +|+|+||.+.|+|+| +.+++...++.|.|+.++|.|.+.   |.. .+..+||+.|+|++|.|.+.+.+ |+|.|.|..
T Consensus         7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~   82 (93)
T cd06494           7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN   82 (93)
T ss_pred             CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence            799999999999999 667899999999999999999874   334 56779999999999999999999 699999986


Q ss_pred             CC---CCCcc
Q 015029          293 PI---QWSSL  299 (414)
Q Consensus       293 ~~---~W~~L  299 (414)
                      ..   .|++|
T Consensus        83 ~~~~~~W~sl   92 (93)
T cd06494          83 RDAGNCWKSL   92 (93)
T ss_pred             CCCCcccccc
Confidence            54   89987

Little is known about the function of the proteins in this subgroup.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=5.3e-12  Score=122.54  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..++.+|..+...|++.+|+..|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|++..+++++|.+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      ..|++++|+..|++++.++|+++....|
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~  171 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDPYRALW  171 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999853333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.3e-12  Score=128.71  Aligned_cols=111  Identities=24%  Similarity=0.426  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |..++.+||.+|+.|+|++||.+|+.||.++|+.+..|.||+.||..+|+|++.+.++.+|++++|+..+|++|++.++.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASL-APGDSRFTNLIKE  112 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l-~p~~~~~~~~l~~  112 (414)
                      .+|++++|+....-..-+ +-.|......+.+
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR  226 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAER  226 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHH
Confidence            999999999888743322 2234444444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.8e-12  Score=125.45  Aligned_cols=115  Identities=29%  Similarity=0.489  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +....+|+.+|+.|+|..|.+.|+.||.++|++    +.+|.+||.+..++|+..+|+.+|+.|+.|++...++++++|.
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~  329 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN  329 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence            457889999999999999999999999999987    7899999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      |+..+++|++|++.|++|.++..+ ...+..+.+++..+.
T Consensus       330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            999999999999999999999887 666666767665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=2.9e-11  Score=110.39  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~-~kl~~--~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ++.+...|..+...|++++|+..|.+|+.++|+++.++.++|.++ ...|+  +.+|+..++++++++|+++.+++.+|.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            356778888899999999999999999999999999999999875 56676  589999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      +++.+|+|++|+.+|++++.++|.+..-...+
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999999999998888765444333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=6.8e-11  Score=126.13  Aligned_cols=124  Identities=17%  Similarity=0.141  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.++|.++|++..+|+++|.+|..+|++++|+.+|++++.++|.++.+++.+|.+++.
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      +|+|++|+.+|++++.++|++......++.+...++........
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  455 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT  455 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999988877777776554444444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.31  E-value=7.3e-11  Score=97.39  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      ++.++..|..++..|+|++|+.+|.+++...|++   ..+++.+|.++++.|+|+.|+..|+.++..+|.+   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578899999999999999999999999999876   5789999999999999999999999999999874   678999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      +|.++..+|++++|...|.+++...|++......
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999999999999999999999999998865544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.29  E-value=1e-10  Score=124.76  Aligned_cols=120  Identities=14%  Similarity=0.147  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|.+++..|+|++|+..|.++|..+|+++.+++.+|.+|+.+|+|++|+.+|++++.++|++..+++.+|.+++
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      .+|+|++|+..|++++.++|.++.+...++.+...++.-.
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence            9999999999999999999999998888888775544433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.29  E-value=1.5e-11  Score=124.22  Aligned_cols=120  Identities=19%  Similarity=0.151  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+.+.|+.+-..+.|+.|+..|.+|+.+.|+.+.++.|+|-+|+.+|.++-||.+|++||++.|.++.||.++|.++.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            35677778888888888888888888888888887788888878888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      ..|+..+|..+|.+++.+.|........++.+++-++.-.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence            8888888888888888888888887777777775554433

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.29  E-value=2.2e-11  Score=95.90  Aligned_cols=81  Identities=22%  Similarity=0.291  Sum_probs=70.9

Q ss_pred             cccccCCCeEEEEEEeCC---CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeC
Q 015029          216 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  291 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  291 (414)
                      |.|.||.+.|+|+|.++.   +...++.|+++.++|+|.+.   |..+.+..+||+.|++++|+|.+.+. .|+|.|.|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~   77 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI   77 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence            789999999999998743   67799999999999999875   33567888999999999999999875 799999999


Q ss_pred             CC-CCCCcc
Q 015029          292 EP-IQWSSL  299 (414)
Q Consensus       292 ~~-~~W~~L  299 (414)
                      .+ .+|++|
T Consensus        78 ~~~~wW~~l   86 (87)
T cd06492          78 NKMEWWSRL   86 (87)
T ss_pred             CCCcccccc
Confidence            66 699987

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.8e-11  Score=115.74  Aligned_cols=109  Identities=26%  Similarity=0.414  Sum_probs=98.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      .|+.++..||.+|+.++|..|+..|+++|.....+    +.+|.|||.|.+.+|+|..|+.||.+|+.++|.+.++|+|-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            37889999999999999999999999999985443    68999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        77 g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      |.|++.+.++++|..+++.++.++-....+...
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l  192 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL  192 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            999999999999999999888776655544333

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.27  E-value=3.6e-11  Score=97.11  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             ccccccCCCeEEEEEEeCC-C-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEeeC
Q 015029          215 RHEFYQKPEEVVVTVFAKG-I-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  291 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~-~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  291 (414)
                      +|.|.||.+.|+|+|.++. + ...++.|+|+.++|.|.+...++..-.+..+||+.|++++|.|.+.+. .|+|.|.|.
T Consensus         6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~   85 (102)
T cd06495           6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC   85 (102)
T ss_pred             ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence            6999999999999998764 3 468999999999999998743333335777999999999999999985 589999998


Q ss_pred             CCCCCCccccCC
Q 015029          292 EPIQWSSLEFSK  303 (414)
Q Consensus       292 ~~~~W~~L~~~~  303 (414)
                      ...+|++|...+
T Consensus        86 ~~~wW~~v~~g~   97 (102)
T cd06495          86 SEVWWNAVLKGE   97 (102)
T ss_pred             CCcccchhhCCC
Confidence            778999997653

Little is known about the function of the proteins in this subgroup.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.4e-11  Score=111.81  Aligned_cols=114  Identities=25%  Similarity=0.428  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ||+++..+|+.+|..+.|..||..|.+||.++|..+.+|.||+.||+++++++.+..++.+|+.++|+..+++|.+|.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPG-----DSRFTNLIKEFV  114 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~  114 (414)
                      .....|.+|+..++++..+--.     -..+...|..++
T Consensus        89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999665321     223555566555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.25  E-value=2.6e-11  Score=122.43  Aligned_cols=122  Identities=20%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+-+.|.+|+.+|..+-||..|.+||++.|+.+++|.|+|.++-..|+..+|.++|++|+++.|+++.+.+++|.+|..
T Consensus       287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34555667788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      +|.+++|...|.++++..|........++.+.+.++....+.
T Consensus       367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence            888888888888888888887777777777776665544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.6e-11  Score=125.07  Aligned_cols=127  Identities=18%  Similarity=0.229  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.+...||++..+++++.||..|.+||+++|+++-+|..+|+-+..+..|+.|..+|..|+.++|.+..|||-+|.+|.+
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .++|+.|...|++|++++|.+..+...++..+..++...++++...+
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~  548 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK  548 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999888888887766555

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.23  E-value=1.6e-10  Score=89.05  Aligned_cols=99  Identities=32%  Similarity=0.493  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..++..|++.+|+..|.++++..|.+..++..+|.+|...+++++|+.+++.++.+.|.+..+++.+|.++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCC
Q 015029           84 EEYETAKVALEKGASLAPG  102 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~  102 (414)
                      |+++.|...|..++.++|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=4.1e-11  Score=89.89  Aligned_cols=66  Identities=35%  Similarity=0.519  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP  101 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg-~y~~A~~~~~~a~~l~p  101 (414)
                      +..|..+|.+++.+|+|++|+.+|.+|+.++|+++.+++++|.+|+.+| ++.+|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3444455555555555555555555555555555555555555555554 35555555555554444

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=9e-11  Score=111.47  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|+.++..|++..|+.+|..|++.+|++..+++.||.+|+.+|+-.-|+.|+.+++++.|++.-|...+|.++.
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      .+|+++.|...|.+++..+|++...
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~~  142 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGLV  142 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcchh
Confidence            9999999999999999999976543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=5.3e-11  Score=89.24  Aligned_cols=66  Identities=30%  Similarity=0.502  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP   67 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p   67 (414)
                      |..+...|..++..|+|++|+.+|+++|+.+|+++.+++++|.||.++| ++.+|+.+|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            6789999999999999999999999999999999999999999999999 79999999999999998

...

>PRK15331 chaperone protein SicA; Provisional

Probab=99.22  E-value=2.7e-10  Score=98.99  Aligned_cols=109  Identities=11%  Similarity=0.019  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +..+..|..+|..|+|++|...|.-....+|.++.+++.+|.|+..+++|++|+..|..|..++++++..+|+.|.||+.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      +|+...|+.+|+.++. .|.+..+......
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~  146 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRAKALV  146 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence            9999999999999988 5666655554433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=3.1e-11  Score=117.95  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+.++|+.+|..|+|++|++.|.+||..+..+..+++++|..+..+|++++|+.||-+.-.+--++.+.++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44677899999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhcCCccccccccccccchhhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLF  156 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  156 (414)
                      .+.+...|+++|.++..+-|+++.+...++.++...+.+..+.+.+|+..|.+.-....+.|....++.-++.++
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek  644 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK  644 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999999999999999999988666668888888766666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=6.7e-10  Score=117.02  Aligned_cols=93  Identities=12%  Similarity=0.032  Sum_probs=68.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL   93 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~   93 (414)
                      ..+++++|+.++.+|++++|+++.++..+|.++..+|++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCCCHHH
Q 015029           94 EKGASLAPGDSRF  106 (414)
Q Consensus        94 ~~a~~l~p~~~~~  106 (414)
                      +++++++|.+...
T Consensus       396 ~~Al~l~P~~~~~  408 (553)
T PRK12370        396 NECLKLDPTRAAA  408 (553)
T ss_pred             HHHHhcCCCChhh
Confidence            7777777776544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=1.6e-10  Score=118.01  Aligned_cols=119  Identities=19%  Similarity=0.251  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      +++-.|..|+++++++.|.-+|.+|+.++|.+..+++..|..+.++|+.++|+..+++|+.++|.++...|.+|.+++.+
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      ++|++|+..|+...++.|++..+...++++.+.++....
T Consensus       571 ~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  571 GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence            999999999999999999999888889888866655444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2e-10  Score=113.48  Aligned_cols=106  Identities=25%  Similarity=0.332  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ||+.+..+|..+|-.|++-.|.+.++++|.++|.+..+|+.||.+|+..++-++-..+|+.|..+||.++..||.+|+.+
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            67888888999999999999999999999999888888999999999999889999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      +.+++|++|+..|++++.|+|.+.-.
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~  430 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYA  430 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHH
Confidence            99999999999999999999877643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.18  E-value=8.1e-10  Score=98.51  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +..+...|..++..|+|++|+.+|.+++...|+.   ..++.++|.+|.++|+|++|+..+.+++.+.|.+..+++.+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4567889999999999999999999999987653   5789999999999999999999999999999999999999999


Q ss_pred             HHHHcCC--------------hHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 015029           79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK  111 (414)
Q Consensus        79 ~~~~lg~--------------y~~A~~~~~~a~~l~p~~~-~~~~~l~  111 (414)
                      +|..+|+              |..|..++++++.++|++- .+..|+.
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  162 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK  162 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence            9999998              6788888888888888763 3444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.16  E-value=3.8e-10  Score=97.75  Aligned_cols=105  Identities=17%  Similarity=0.112  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        22 i~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ..+|+++|+++|++   +.++|.++..+|+|++|+.+|.+++.++|.+..+|+.+|.++..+|+|++|..+|.+++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46799999999885   667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029          102 GDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+......++.|...+++...+......
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~  117 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQT  117 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998776666555544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=2e-09  Score=98.09  Aligned_cols=122  Identities=17%  Similarity=0.069  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|+|++|+..|.+++..+|++..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhhhhh
Q 015029           82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      .+|++++|...|.+++...  +........++.+....+.....
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  154 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA  154 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999988754  33344444455555444333333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=1.3e-09  Score=99.56  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=101.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV   91 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~-~~lg~--y~~A~~   91 (414)
                      .++.++++..|.++|+.+|+++.+|..+|.+|..+|++++|+..|++|++++|+++.+++.+|.++ +..|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 77788  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .|+++++++|++..+...++.+.-..+.-..+..+...
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999998887555554444443333

>PRK12370 invasion protein regulator; Provisional

Probab=99.15  E-value=1.1e-09  Score=115.42  Aligned_cols=126  Identities=16%  Similarity=0.063  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..+...|++++|+.+|.+|++++|+++.+++.+|.+|..+|++++|+..++++++++|.++.+++.++.+++
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999888888888899


Q ss_pred             HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhhhhhhH
Q 015029           82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKEFVGLLMQNAVYLCWN  127 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~~  127 (414)
                      .+|+|++|...+++++... |+++.+...++.+...++....+..+.
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999999875 778888888888886666655554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=1.2e-09  Score=116.73  Aligned_cols=122  Identities=11%  Similarity=-0.062  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.++..|.+....|.|++|..++..++++.|++..++.+++.++.+++++++|+..+++++..+|++..+++.+|.++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      .+|+|++|..+|++++..+|++..+...++.+.+..++...+
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999888888887766554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.15  E-value=7.7e-10  Score=93.98  Aligned_cols=110  Identities=20%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        23 ~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      ++|.+++..+|++..+++.+|.+++..|++.+|+..+++++.++|.++.+++++|.+++.+|++++|...|++++.++|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029          103 DSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus       103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      +......++.+....+....+..+.....+
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999777766666665554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=4.6e-10  Score=110.36  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~   87 (414)
                      .||-+...+++++|+.+|.+||+++|....+|..+|+-|+.+++-..|+..|++|+.++|.+.+|||-+|++|.-|+...
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            47777788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           88 TAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      -|+.+|++++.+-|.|+.+...+++|+..++....+
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            888888888888888888888888888776554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.13  E-value=1.3e-10  Score=90.94  Aligned_cols=82  Identities=27%  Similarity=0.406  Sum_probs=73.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029           14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      .+|+|+.|+.+|++++...|.  +..+++.+|.||+++|+|.+|+..+++ ...++.+...++.+|.|++.+|+|++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  467788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 015029           92 ALEKG   96 (414)
Q Consensus        92 ~~~~a   96 (414)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.12  E-value=1.4e-09  Score=120.30  Aligned_cols=111  Identities=14%  Similarity=0.024  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|.++...|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|++|++++|+++.+++.+|.++..+
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |++++|..+|++++.++|++..+....+.+.
T Consensus       691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        691 DDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             CCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            6666666666666666666665555444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=4.8e-09  Score=95.61  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC   80 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~   80 (414)
                      ..+...|..++..|++++|+..|.+++...|.+..++.++|.+|+..|++++|+..+.+++...  +.....++.+|.++
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999999864  45677899999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +..|++++|...|.+++..+|.+......+..+....+.-..+..+..+
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  194 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER  194 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999888777777776555554444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=3.3e-09  Score=98.97  Aligned_cols=111  Identities=24%  Similarity=0.241  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~---a~~~   75 (414)
                      ++.++..|..++..|+|+.|+..|.+++..+|+++   .+++.+|.+|+.++++++|+..|++++++.|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            56789999999999999999999999999999875   68899999999999999999999999999997665   7999


Q ss_pred             HHHHHHHc--------CChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        76 ~g~~~~~l--------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      +|.+++.+        |+++.|...|++++..+|++......+..
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            99999987        88999999999999999998766544433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.6e-09  Score=105.14  Aligned_cols=126  Identities=16%  Similarity=0.106  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+.-.|..+...++...||+.|++|++++|.+..+|+.+|++|.-++...=|+-.|++|+.+.|.++..|-.+|.||..+
T Consensus       366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ++.++|+.||.+++.+...+..+...++++.+.+.....+.++..+
T Consensus       446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999999999999999999999888777776655443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.8e-09  Score=96.43  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIE   64 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~----------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~   64 (414)
                      ..+.+.||.+|+.|+|.+|...|..||-.        .|..          ..++.|.++|++..++|-+++..+..++.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998754        4554          45789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 015029           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKEFV  114 (414)
Q Consensus        65 l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~-~~~~l~~~~  114 (414)
                      .+|.+.+|||++|.+....-+.++|.+.|.++++++|.-.. +...+.-+.
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le  309 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE  309 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997443 444444444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.07  E-value=4.5e-09  Score=95.40  Aligned_cols=97  Identities=18%  Similarity=0.059  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +....+.|..++..|++..|...+++||+.+|++..++..||..|.++|..+.|-+.|++|+.++|++..++.+.|--++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999988877777777777


Q ss_pred             HcCChHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGAS   98 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~   98 (414)
                      ..|+|++|+..|++++.
T Consensus       115 ~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         115 AQGRPEEAMQQFERALA  131 (250)
T ss_pred             hCCChHHHHHHHHHHHh
Confidence            77777777777777664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.07  E-value=7.9e-10  Score=106.24  Aligned_cols=126  Identities=20%  Similarity=0.147  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      -+...|..+...|++++|+..|.+||..+|++..++..++.+++..|+++++...+.......|.++..+..+|.+|+.+
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            45678888999999999999999999999999999999999999999999888888888887788888888899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      |++++|+.+|++++..+|+|+.+...++.+....+....+...+.+
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999998888666555555444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.05  E-value=4.4e-09  Score=93.33  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +..+...|..++..|+|++|+..|.+++.+.|+.   +.++.++|.+|..+|++++|+.+|++|+.++|....+++.+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4567889999999999999999999999987663   4589999999999999999999999999999999999999999


Q ss_pred             HHH-------HcCChH-------HHHHHHHHHHHhCCCCH
Q 015029           79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS  104 (414)
Q Consensus        79 ~~~-------~lg~y~-------~A~~~~~~a~~l~p~~~  104 (414)
                      ++.       .+|+++       +|...|++++.++|.+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999       777766       55666667777887644

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=6.1e-09  Score=115.39  Aligned_cols=117  Identities=22%  Similarity=0.241  Sum_probs=105.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 015029           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA   89 (414)
Q Consensus        10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A   89 (414)
                      ..++..|++++|+.+|.++++++|+ +.++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++|
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3444559999999999999999996 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhH
Q 015029           90 KVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWN  127 (414)
Q Consensus        90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~  127 (414)
                      +..|++++.++|++..+...++.+...++.-..+....
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l  700 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA  700 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999998886666655544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.04  E-value=9e-09  Score=97.88  Aligned_cols=111  Identities=12%  Similarity=0.014  Sum_probs=98.8

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 015029            3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (414)
Q Consensus         3 e~~~~~g~~~-~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~   75 (414)
                      ...+..|..+ +..|+|++|+..|...|...|++   +.+++.+|.+|+..|+|++|+..|.+++...|+   .+.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3456777776 66899999999999999999998   589999999999999999999999999999887   5889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      +|.++..+|+++.|...|+++++..|+...+.....++
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999988665554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=6.4e-09  Score=96.09  Aligned_cols=110  Identities=21%  Similarity=0.197  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +..+|..++..|+|..|+..+.++..+.|+++.+|..+|.+|.++|++++|...|.+|+++.|..+.++-++|..|+..|
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +++.|...+..+...-+.+..+...+..+.
T Consensus       183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         183 DLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             CHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            999999999999988888999998888777

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=8.2e-09  Score=110.83  Aligned_cols=110  Identities=13%  Similarity=0.042  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~----Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++    |+..|++++.++|++..+++.+|.++...
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            34555566666666666666666666666666666666666666654    56666666666666666666666666666


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      |++++|+..|++++.++|++..+...++.+...+
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            6666666666666666666665555555544333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.02  E-value=9e-09  Score=110.52  Aligned_cols=130  Identities=10%  Similarity=0.026  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~----Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ..+...|..++..|++++    |+..|.+++.++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            345678999999999996    8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      +|..+|++++|+..|++++..+|.+..+...++.+...++....+........+
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999876665566666555555555555544443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=8.3e-10  Score=111.24  Aligned_cols=98  Identities=21%  Similarity=0.306  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      ....|..++..|+|++|+..|+.||...|+|..+|..+|..+....+..+|+..|.+|+.|.|.+.+++|++|++|..+|
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCC
Q 015029           85 EYETAKVALEKGASLAPG  102 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~  102 (414)
                      .|++|..+|-.++.+.+.
T Consensus       513 ~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  513 AYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hHHHHHHHHHHHHHhhhc
Confidence            999999999999998765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.4e-09  Score=80.46  Aligned_cols=63  Identities=21%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        41 ~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+|..|+..|+|++|+.+|+.++..+|.++.+++.+|.+++.+|++++|...|++++.++|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555666666666666666566555666666666666666666666666665555554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.99  E-value=1.6e-08  Score=106.48  Aligned_cols=123  Identities=13%  Similarity=0.084  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+..+||.+|..|++++|..++.++|+++|.++.+|..+|.+|..+|+.++|+.++-.|-.++|.+...|.+++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      .+|+++.|..||.++++++|.+-.+......+.+..+....+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am  261 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM  261 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence            9999999999999999999999877666666666555554444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.98  E-value=1.1e-08  Score=84.87  Aligned_cols=100  Identities=27%  Similarity=0.326  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT   78 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~----~~a~~~~g~   78 (414)
                      ..+-.+|..+...|+.+.|++.|.++|.+.|.++.+|.||+++|.-.|+.++|+.|+++|+++....    -.+|..+|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999999999999999999999999997653    358999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCC
Q 015029           79 ACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      +|..+|+-+.|...|+.+-++...
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCH
Confidence            999999999999999999888764

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.98  E-value=1.5e-09  Score=82.85  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=67.3

Q ss_pred             cccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-------CCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029          218 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  290 (414)
Q Consensus       218 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  290 (414)
                      |+|+++.|+|+|+++++.++++.|.+.++.|.|++...       +...|.+.+.|+++|+|+.+++.+.+..|+|.|.|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK   80 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence            99999999999999999999999999999999997654       24579999999999999999999999999999987

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=98.97  E-value=3.1e-09  Score=91.81  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             CccccccCCCeEEEEE-EeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029          214 YRHEFYQKPEEVVVTV-FAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  291 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i-~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  291 (414)
                      -.|.|+||-..|.|.| +.++. +..+|.|.+..++|.|.+.   |.+-.+..+|+++|++++|.|.|.+.++.+++-|+
T Consensus        19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K   95 (179)
T KOG2265|consen   19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK   95 (179)
T ss_pred             cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence            3699999999999998 45565 7789999999999998875   44467788999999999999999999776666555


Q ss_pred             CC--CCCCccccCC
Q 015029          292 EP--IQWSSLEFSK  303 (414)
Q Consensus       292 ~~--~~W~~L~~~~  303 (414)
                      ..  .+|.+|...+
T Consensus        96 ~~~~eWW~~ll~ge  109 (179)
T KOG2265|consen   96 SNKMEWWDSLLEGE  109 (179)
T ss_pred             cchHHHHHHHHcCC
Confidence            54  8999988654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.96  E-value=2.5e-08  Score=93.09  Aligned_cols=124  Identities=15%  Similarity=0.024  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK   71 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~---~~~~ra~~~~kl--------~~~~~Al~~~~~Ai~l~p~~~~   71 (414)
                      ..+...|..++..|++++|+..|.++++..|+++.   +++.+|.+++..        +++++|+..|++++..+|.+..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            35678899999999999999999999999998865   789999999987        8899999999999999998754


Q ss_pred             H-----------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhhhhhh
Q 015029           72 A-----------------YWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        72 a-----------------~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      +                 .+.+|.+|+..|++.+|+..|+.++...|+++   .+...+..+...++....+..+
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~  225 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA  225 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3                 24678899999999999999999999988654   5667777777655555554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.95  E-value=1.5e-08  Score=98.31  Aligned_cols=110  Identities=16%  Similarity=0.033  Sum_probs=95.5

Q ss_pred             cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029           15 DDYFELAYDLYSQAIEISP---N-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P---~-~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      .+..+.+|..++++|...|   . .+.+|+++|.+|..+|++.+|+.+|.+|+.++|+++.+|+.+|.++..+|+|++|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3456889999999997443   3 37889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           91 VALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      ..|.++++++|++..+...++.+....++...+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999988888877764444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=2.8e-09  Score=78.93  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      +..|..++..|+|++|+..|.++++..|+++.+++.+|.+++.+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36799999999999999999999999999999999999999999999999999999999999874

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.94  E-value=2.3e-08  Score=85.17  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      +++++..|..++..|+|.+|+..|.......|..   ..+.+.++.+|++.++|.+|+..+++-|+|+|.+   .-++|+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            5688999999999999999999999988887765   6889999999999999999999999999999975   569999


Q ss_pred             HHHHHHHcCC---------------hHHHHHHHHHHHHhCCCCHHHHH
Q 015029           76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        76 ~g~~~~~lg~---------------y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      +|.+++.+..               ...|...|++.+..-|+..-+..
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999999987               88999999999999998775543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.92  E-value=2.8e-08  Score=90.24  Aligned_cols=112  Identities=15%  Similarity=0.096  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACM   81 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--~p~~~~a~~~~g~~~~   81 (414)
                      .+..++..+...|+.+.|-+.|.+||.++|++.+++.|.|..++.+|+|++|...|++|+..  -+..+..+-++|.|-.
T Consensus        71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063          71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence            45677889999999999999999999999999999999999999999999999999999974  2346889999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      ++|+++.|...|+++++++|+++.....+.+.+.
T Consensus       151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence            9999999999999999999999877766666553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.90  E-value=1.3e-09  Score=103.94  Aligned_cols=113  Identities=32%  Similarity=0.403  Sum_probs=105.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +|.+.+-++..++.+|.++.||++|+.||.++|.++.+|..|+.+|++++....|++||..|+.++|+....|-.+|.+.
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~  192 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE  192 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence            36677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ..+|++.+|..+|..+++++.+ .....|+..+.
T Consensus       193 rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~  225 (377)
T KOG1308|consen  193 RLLGNWEEAAHDLALACKLDYD-EANSATLKEVF  225 (377)
T ss_pred             HHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhc
Confidence            9999999999999999999985 44667777666

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=4.6e-08  Score=106.99  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..+...|++.+|+.+|.++|..+|.++.++..+|.++...|++++|+..+++++.++|++.. ++.+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            3457888999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      ..|++++|+..|++++.++|++..+...+..+..
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999988877766653

>PLN02789 farnesyltranstransferase

Probab=98.90  E-value=3.7e-08  Score=96.36  Aligned_cols=105  Identities=17%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHH
Q 015029           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--ETA   89 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y--~~A   89 (414)
                      ...+.+++|+..++++|+++|.+..++..|+.++..++ .+++|+.++++++..+|.+..+|+.++.++..+|++  ..+
T Consensus        48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence            34455566666666666666666666666666666665 456666666666666666666666666666555552  455


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           90 KVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +.++.++++++|.|-.+....+.+...+
T Consensus       128 l~~~~kal~~dpkNy~AW~~R~w~l~~l  155 (320)
T PLN02789        128 LEFTRKILSLDAKNYHAWSHRQWVLRTL  155 (320)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            5555566666666555544444444333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.90  E-value=5e-08  Score=106.60  Aligned_cols=116  Identities=22%  Similarity=0.174  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++..+|++..+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (899)
T TIGR02917       126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS  205 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      .|++++|..+|++++.++|.+..+...+..+....+
T Consensus       206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g  241 (899)
T TIGR02917       206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG  241 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999887777666654433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=4.9e-08  Score=111.38  Aligned_cols=118  Identities=18%  Similarity=0.122  Sum_probs=85.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------H
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK--------------A   72 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~--------------a   72 (414)
                      ..|..++..|++++|+..|.++|..+|+++.++..+|.+|+++|++++|+.+|++++.++|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            34778888888888888888888888888888888888888888888888888888888876432              1


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      .+.+|.++...|++++|...|++++.++|.+..+...++.+....+....+.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~  405 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE  405 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            2234666667777777777777777777776666666666554444444333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.86  E-value=6.8e-08  Score=103.38  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...+..+.+.+.+++|+..+.++|..+|+++.+++.+|.++.++|+|++|+..|++++..+|++..++..+|.++.
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGD-SRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~-~~~~~~l~~~~  114 (414)
                      .+|+.++|..+|++++.+...- ..+...+.++.
T Consensus       200 ~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (694)
T PRK15179        200 RRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN  233 (694)
T ss_pred             HcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence            9999999999999999876543 33344454444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.86  E-value=7.3e-08  Score=91.97  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+..+...++-.|++..||+..+..|++.|-++.++..||.||...|....||.|...|-.|..++.+.+|.++.++|..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      |+...++...+.|++++|++..+.-.+.++++....
T Consensus       237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999877777666655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.86  E-value=1.1e-07  Score=95.13  Aligned_cols=108  Identities=14%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLE   84 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~~~~lg   84 (414)
                      ...|..++..|++++|+.+|.++++..|++..+++.+|.+|.+.|++++|+..+++++.++|.+ ..++..++.+|..+|
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  263 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG  263 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence            3455566666677777777777766666666666666777777777777777777776666654 345566666666777


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++++|...|++++.++|+...+ ..+..+.
T Consensus       264 ~~~~A~~~l~~~~~~~p~~~~~-~~la~~~  292 (389)
T PRK11788        264 DEAEGLEFLRRALEEYPGADLL-LALAQLL  292 (389)
T ss_pred             CHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence            7777777777666666655433 3344443

>PLN02789 farnesyltranstransferase

Probab=98.84  E-value=1.2e-07  Score=92.92  Aligned_cols=112  Identities=13%  Similarity=0.011  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         3 e~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~--~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      ..+..+|.++...| ++.+|+..++++++.+|.+..++.+|+.++.++++.  .+++.+++++++++|.+..+|..+|.+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~  151 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV  151 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45677889999988 689999999999999999999999999999999874  789999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +..+|+|++|++++.++++++|.|..+...+..+.
T Consensus       152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            99999999999999999999999998887776655

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.84  E-value=8.4e-08  Score=109.49  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-------
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT-------   78 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~-------   78 (414)
                      ...|..++..|++++|+.+|.+++.++|+++.+++.+|.+|..+|++++|+..|++++.++|.+..++..++.       
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            3557888889999999999999999999888888889999999999999999999999998887766554443       


Q ss_pred             -----------------------------------HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           79 -----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        79 -----------------------------------~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                                                         ++...|++++|+..|++++.++|++..+...+..+...++.
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                               44567888899999999999999888877777766644443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.84  E-value=8.6e-08  Score=104.77  Aligned_cols=108  Identities=17%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      ...|..+...|++++|+.+|.++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.+++.+|+
T Consensus       774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  852 (899)
T TIGR02917       774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE  852 (899)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            3444555555555555555555555555555555555555555555 445555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +++|...|+++++++|.++.+...+..+.
T Consensus       853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  881 (899)
T TIGR02917       853 ADRALPLLRKAVNIAPEAAAIRYHLALAL  881 (899)
T ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            55555555555555555555555554444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.84  E-value=1.6e-08  Score=76.45  Aligned_cols=67  Identities=28%  Similarity=0.464  Sum_probs=41.9

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        44 ~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      .+|+..++|+.|+.++++++.++|+++.+++.+|.+++.+|+|.+|..+|++++.+.|++..+....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            4556666666666666666666666666666666666666666666666666666666665554443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.80  E-value=3.8e-08  Score=102.22  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~--~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      +..++..|..+...|.+.+|.+.|..|+.++|+.+.+...+|.+|+..|+-..|..  ....|+++||.++++||++|.+
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999998887777  9999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      +..+|+.+.|.+||..|+++++.+|-
T Consensus       764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  764 FKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.80  E-value=1.4e-08  Score=75.61  Aligned_cols=67  Identities=19%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ++..|+|++|+.+|.+++..+|++..+++.+|.||++.|++++|...+++++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3556677777777777777777777777777777777777777777777777777666555555543

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.80  E-value=1.8e-07  Score=93.66  Aligned_cols=120  Identities=14%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----KAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-----~a~~~~g~~   79 (414)
                      +...|..++..|++++|+..|.+++...|.+..++..++.+|.+.|++++|+..+..++..+|...     ..++.+|.+
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            455677777888888888888888877777777777888888888888888888888777776542     245567777


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      +...|++++|...|+++++++|.+......++.+....+.-..+.
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  234 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI  234 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence            778888888888888888777777666666666654444433333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.80  E-value=8.3e-08  Score=83.16  Aligned_cols=96  Identities=9%  Similarity=0.022  Sum_probs=87.8

Q ss_pred             HhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           30 EIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        30 ~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      .+. ++..+.++.+|..++..|++++|...|+.++.++|.+...|+.+|.|+..+|+|.+|+.+|.++..++|+|+....
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            356 6778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhh
Q 015029          109 LIKEFVGLLMQNAVYLC  125 (414)
Q Consensus       109 ~l~~~~~~~~~~~~~~~  125 (414)
                      .++.|.-.++.......
T Consensus       108 ~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363        108 AAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            99999966666555543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.2e-07  Score=89.69  Aligned_cols=111  Identities=21%  Similarity=0.176  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ++.+...|..++..|++..|+..|.+|+++.|+|+..+..+|.+++...   .-.+|...+++|+.+||.+..+.+.+|.
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~  235 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF  235 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            3567788999999999999999999999999999999999999998864   5678999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      .+|..|+|.+|...++..+.+.|.+..-...+.+
T Consensus       236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            9999999999999999999999877654444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.79  E-value=4.5e-08  Score=73.99  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=65.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ...++..++|+.|+..+++++.++|+++.++..+|.+|+++|+|.+|+.++++++.++|+...+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999998887766554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=2.2e-07  Score=92.63  Aligned_cols=132  Identities=17%  Similarity=0.140  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      ..+-.+...+..|.++.|+..++..+...|+|+.++..++.++++.++..+|+..+++++.++|+.+-..+.+|.+|+..
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVG  135 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      |++.+|+..+...+.-+|+|+..+..+++++..++.......-+.+..-..|
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999888776665544444333333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5.5e-08  Score=98.00  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----N---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P----~---~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      +...|..+|..+.|.+|+.+|..+|..-+    .   -...+.|+|++|.+++.|++|+.+|++|+.+.|.++..|--+|
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            45678899999999999999999984321    1   2456899999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|..+|+++.|+..|.+++.+.|+|..+...++.+-
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999988888887665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.76  E-value=1.9e-07  Score=102.18  Aligned_cols=110  Identities=16%  Similarity=0.062  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..+...|++++|+..|.+++...|.+..+++.+|.++..+|++++|+..+++|+.++|++..+++.+|.++..+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~  440 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL  440 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      |+|++|...++.++...|+++.+...-...
T Consensus       441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        441 QEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999766554433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.74  E-value=4.8e-07  Score=82.97  Aligned_cols=120  Identities=25%  Similarity=0.222  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      ++.++..|..++..|+|.+|+..|++++...|.+   ..+.+.+|.+|++.|+|..|+..+++.+...|.+   ..++|.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            5688999999999999999999999999998876   6899999999999999999999999999999974   569999


Q ss_pred             HHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhh
Q 015029           76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQNA  121 (414)
Q Consensus        76 ~g~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~~~  121 (414)
                      +|.+++.+..           ...|...|+..+...|+.+-   +...+..+...+.++.
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e  144 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE  144 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999887642           45899999999999998764   4445556665554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=3.5e-07  Score=85.58  Aligned_cols=112  Identities=16%  Similarity=0.143  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~   75 (414)
                      ++.+++.|..++..|+|..|...|..-|+..|++   +.+++-+|.+++.+|+|.+|...|..+++-.|.   -++++|.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            3568999999999999999999999999999987   689999999999999999999999999999886   4789999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      +|.|+.++|+.++|...|+++.+.-|....+......+
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999999999999999988766554433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.9e-08  Score=95.79  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS-   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-   68 (414)
                      +++++-+|.+++...+.+.|+.+|+++|.++|+.            ...+-.+|.-.++.|+|..|..+|..||.++|+ 
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            5678889999999999999999999999999986            345677899999999999999999999999997 


Q ss_pred             ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        69 ---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                         +...|+++|.++.++|+..+|+..+..++.|++.--.+....++|...+.+-..+.
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV  341 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               57789999999999999999999999999999987777777888887765544443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.72  E-value=1.1e-07  Score=91.20  Aligned_cols=126  Identities=21%  Similarity=0.220  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~--P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      .....+...++++++...+.++....  +.++.+|..+|.++.+.|++++|+.++++|++++|++..+...++.++..+|
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~  194 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG  194 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence            44567788999999999999977654  6788999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      +++++.+.+.......|.++.+...++.+...++....++.|.....+
T Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence            999999999999888888888888899999888888888877766443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.70  E-value=5.6e-08  Score=72.38  Aligned_cols=67  Identities=21%  Similarity=0.354  Sum_probs=61.4

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        46 ~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      +++.|+|++|+..|++++..+|++..+++.+|.||+..|++++|...|++++..+|+++.+...+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999999999999998877766654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.69  E-value=5.4e-07  Score=75.29  Aligned_cols=96  Identities=21%  Similarity=0.048  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK   76 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~   76 (414)
                      +.+++.|..+-..|+.++|+.+|.+++......   ..+++.+|.+|..+|++++|+..++.++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999975444   679999999999999999999999999999887   77888889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHH
Q 015029           77 ATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        77 g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      +.+++.+|++++|+..+..++-
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999987763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.68  E-value=1.7e-07  Score=93.41  Aligned_cols=82  Identities=22%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+..+|.+++..|+|++|+..|.+||.++|+++.+|+++|.+|+.+|+|++|+.+|++++.++|++..++..++.|..
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             Hc
Q 015029           82 KL   83 (414)
Q Consensus        82 ~l   83 (414)
                      .+
T Consensus       116 kl  117 (356)
T PLN03088        116 KI  117 (356)
T ss_pred             HH
Confidence            66

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.67  E-value=1.3e-06  Score=82.27  Aligned_cols=121  Identities=17%  Similarity=0.115  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~---~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      ++.++..|..++..|+|++|+..|.+++...|..+.+   .+.+|.+|+++++|.+|+..|++.+++.|++   ..++|.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            4567899999999999999999999999999998644   4899999999999999999999999999874   678999


Q ss_pred             HHHHHHHcCC------------------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhhhhh
Q 015029           76 KATACMKLEE------------------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        76 ~g~~~~~lg~------------------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~~~~  122 (414)
                      +|.+++.+++                  ...|+..|+..++..|+..-   +...+..+...+.++..
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999866651                  25788999999999998764   44445555544444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.66  E-value=1.1e-07  Score=94.94  Aligned_cols=68  Identities=24%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        32 ~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a---~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      +|+++.+++++|.+|+++|+|++|+.+|++|++++|++..+   ||++|.||..+|++++|+.+|++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46667777777777777777777777777777777776643   777777777777777777777777776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.65  E-value=3.2e-07  Score=80.72  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 015029           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE--   85 (414)
Q Consensus        18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~----------~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~--   85 (414)
                      |+.|.+.|...+..+|.+++.+++=|.+++.+.          -+++|+.-|+.||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            678999999999999999999999999998873          46778999999999999999999999999998875  


Q ss_pred             ---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           86 ---------YETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        86 ---------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                               |+.|..+|+++...+|+|...+..+.-+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     78999999999999999998888877665

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.64  E-value=5.4e-07  Score=83.42  Aligned_cols=117  Identities=21%  Similarity=0.243  Sum_probs=105.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      ...+..++..|+-+.++....+++..+|.+..++...|..+++.|+|.+|+..+.+|.+++|.+.++|.-+|.+|.++|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            45677888899999999999998888999999998899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      ++.|...|.+++++.|.++.+...+.-..-+.+....
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~  186 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED  186 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence            9999999999999999999988888776644444333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.63  E-value=3.9e-07  Score=78.83  Aligned_cols=121  Identities=19%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      |...+......+..+++..+...+...+...|+.   ..+.+.+|.+++..|+|++|+..|+.++...++.   ..+.++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            3456677777778888888888888888888887   5677778888888888888888888888877553   458888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      +|.+++..|+|++|+..++.. .-.+-.+.+...++++....+....+
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            888888888888888888652 22222344555666666555554444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=4.2e-07  Score=80.58  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK   82 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~   82 (414)
                      +.+.+|..+.|..+...+...+...+.+  ..+++++|.++..+++|++|+..|.+|+.+.++   .+.+++++|.+|..
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~   84 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS   84 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence            4567888899999999998877776665  678899999999999999999999999999775   34699999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +|++++|+.+|++++.++|........+..+...+
T Consensus        85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            99999999999999999999888777777766533

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=2e-06  Score=79.28  Aligned_cols=114  Identities=15%  Similarity=0.115  Sum_probs=102.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      .-.|..+-..|+|++|+++|+..|+-+|.|...+-..-.+...+|+--+||+-....+..-+.+.+||..++.+|+.+|+
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            45688888999999999999999999999998888777777778888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      |+.|..||+.++-+.|-++.+...++++.=.++.
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988888887744433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.61  E-value=8.6e-07  Score=96.71  Aligned_cols=121  Identities=11%  Similarity=-0.057  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH--HHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK--ATA   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~--g~~   79 (414)
                      +...+.++...++.|+|..|+..|.++++.+|.++.+...++.++...|++++|+..+++++  +|.+..++..+  |.+
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l  111 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA  111 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999996444488888888899999999999999  55444444444  779


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      |..+|+|+.|++.|+++++++|+++.+...+..+....++...++
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence            999999999999999999999999887776655554444433333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=2.5e-07  Score=83.31  Aligned_cols=111  Identities=22%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |.-++.+|+.+-..|-+.-|.-.|+++|.+.|.-+.++..+|.-+...|+|+.|...|+..+++||.+--++.++|++++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            34467777777778888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      --|+|..|.+.|.+..+-||+|+--..|+--
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl  175 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL  175 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence            9999999999999999999999976666533

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=4.7e-07  Score=88.65  Aligned_cols=95  Identities=23%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +.+.+.++.+.++|..|+...+++|.++|+|..+++.||.||+.+++|+.|+.+|++|+.++|.|-.+...+..|-.+..
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             ChHHH-HHHHHHHHHh
Q 015029           85 EYETA-KVALEKGASL   99 (414)
Q Consensus        85 ~y~~A-~~~~~~a~~l   99 (414)
                      +|.+. ...|...+..
T Consensus       340 ~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  340 EYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            77655 4556555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.56  E-value=1.3e-06  Score=66.65  Aligned_cols=82  Identities=27%  Similarity=0.329  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +++++|.+++..|++++|+..+.+++.+.|.+..+++.+|.++...+++++|..+|+.++.+.|.+......+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999887776676666444


Q ss_pred             hh
Q 015029          118 MQ  119 (414)
Q Consensus       118 ~~  119 (414)
                      +.
T Consensus        82 ~~   83 (100)
T cd00189          82 GK   83 (100)
T ss_pred             Hh
Confidence            33

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.55  E-value=1.1e-06  Score=87.99  Aligned_cols=65  Identities=18%  Similarity=0.166  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~---~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      ++.+.+.|..++..|+|++|+..|++||+++|++..+   |+|+|.||.++|++++|+.++++|+++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999855   9999999999999999999999999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=1.8e-07  Score=93.63  Aligned_cols=104  Identities=26%  Similarity=0.293  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl---~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ++.++..|+..|..+....||.+|.++++..|....+|.+|+.+++++   ++.-.|++|+..|++++|...+|||+++.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999999997   58889999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      +++.+++|.+|+.+...+....|.|..
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999998888888886654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9.6e-07  Score=94.02  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      +|+.++..|..+..+|+|++|-.+|-++++.++++ ...++.+|+.|++.|+++.|+.+|++++...|++.+...-+|.+
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            35667777888888888888888888888877777 66777778888888888888888888888888888887888877


Q ss_pred             HHHcC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        80 ~~~lg----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      |...+    ..+.|...+.++++..|.|..+...++.+...
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            77775    55677777777777777777666666655533

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.48  E-value=2.8e-06  Score=69.67  Aligned_cols=94  Identities=14%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNL  109 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~  109 (414)
                      +..++.+|..++..|++++|+..|..++..+|++   ..+++.+|.+++..|+|+.|...|+.++..+|++   ..+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999875   6799999999999999999999999999999886   345556


Q ss_pred             HHHHHHHHhhhhhhhhhHHH
Q 015029          110 IKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ++.+...++.......+...
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHH
Confidence            66666444444444444333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11906 transcriptional regulator; Provisional

Probab=98.45  E-value=5.9e-06  Score=82.87  Aligned_cols=111  Identities=10%  Similarity=0.010  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 015029            4 DLEKKAKEAFIDDY---FELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS   68 (414)
Q Consensus         4 ~~~~~g~~~~~~g~---y~~Ai~~y~~AL---~~~P~~~~~~~~ra~~~~kl---------~~~~~Al~~~~~Ai~l~p~   68 (414)
                      .++.+|...+.++.   ...|+.+|.+|+   .++|..+.+|..+|.||+.+         ..-.+|++.+.+|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            45677777776665   457888999999   99999999999999999876         2456789999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++.+++.+|.++...++++.|...|++++.++|+...+....+.+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988777776655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.44  E-value=6.5e-06  Score=85.73  Aligned_cols=126  Identities=16%  Similarity=0.085  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CCCC
Q 015029            3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--------NFTEAVADANRAIEL--EPSM   69 (414)
Q Consensus         3 e~~~~~g~~~~~~g~---y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--------~~~~Al~~~~~Ai~l--~p~~   69 (414)
                      -+++.+|..++..++   +..|+.+|.+||+++|+++.+|..++.+|....        ++..+...+.+++.+  ++..
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~  419 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL  419 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence            456778888887766   889999999999999999999998888886642        344566666676664  6667


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +.+|.-+|..+...|++++|...|++++.++|+ ......++++....++...+..+...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            788888888888889999999999999999984 56777778777666665555444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.44  E-value=4.8e-06  Score=74.08  Aligned_cols=85  Identities=15%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        34 ~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ..+.+++++|.+|...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|+|++|..+|.+++.++|.+......+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            457789999999999999999999999999987753   57999999999999999999999999999999998887777


Q ss_pred             HHHHHHHh
Q 015029          111 KEFVGLLM  118 (414)
Q Consensus       111 ~~~~~~~~  118 (414)
                      +.+...++
T Consensus       113 g~~~~~~g  120 (172)
T PRK02603        113 AVIYHKRG  120 (172)
T ss_pred             HHHHHHcC
Confidence            77764443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.44  E-value=2.2e-06  Score=84.77  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~----~~a~~~~g~~~   80 (414)
                      +...|..+...|++++|+..|.+++.++|+++.++..+|.+|+..|++++|+..+.+++.+.|..    ...|+.+|.++
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999987643    24567899999


Q ss_pred             HHcCChHHHHHHHHHHHHhCC
Q 015029           81 MKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ..+|++++|...|++++...|
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHCCCHHHHHHHHHHHhcccc
Confidence            999999999999999876666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=2.4e-06  Score=85.55  Aligned_cols=97  Identities=24%  Similarity=0.313  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y   86 (414)
                      ..+..++..++..+|++.+.++|...|.+..++...|..+++.++|+.|+..+++|+.+.|.....|+.++.+|..+|+|
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            35666667777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 015029           87 ETAKVALEKGASLAPGD  103 (414)
Q Consensus        87 ~~A~~~~~~a~~l~p~~  103 (414)
                      +.|+..+..+--+-+.+
T Consensus       285 e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  285 ENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHhcCcCCCCcc
Confidence            88887776554443333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=2.6e-07  Score=70.78  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           34 NSAELFADRAQASIKLQNFTEAVADANRAIELE----P---SMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        34 ~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p---~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      +-+.++.++|.+|..+|+|++|+.+|++|+.+.    +   ....+++++|.++..+|++++|+..|++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345688899999999999999999999999772    1   23668889999999999999999999998865

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=4.9e-06  Score=83.10  Aligned_cols=111  Identities=23%  Similarity=0.137  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +-..+..++..+++.+|++.+.+++.+.|+.+.+.+++|.+|++.|++.+|+..++..+..+|+++..|..+|.+|..+|
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +-.+|...+.....+...-..+...+..+.+
T Consensus       423 ~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         423 NRAEALLARAEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999999998888876666666666663

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.42  E-value=1.5e-05  Score=68.86  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ..+..|..++..|+|++|+..|..++...|+.   ..+.+.+|.+++..|+|++|+..++. +.-.+-.+.++..+|.+|
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence            45778999999999999999999999988665   46888999999999999999999966 333344677899999999


Q ss_pred             HHcCChHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGA   97 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~   97 (414)
                      ...|++++|...|++++
T Consensus       129 ~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  129 LAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHCCCHHHHHHHHHHhC
Confidence            99999999999999874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=8.3e-06  Score=75.30  Aligned_cols=112  Identities=16%  Similarity=0.060  Sum_probs=97.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      +++--.+-.+|.--+||+.+..-|+..+.+.++|..+|..|+..|+|++|.-|++.++-+.|.++..+.|+|.++|-+|.
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            33444556678888999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             ---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           86 ---YETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        86 ---y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                         +..|..+|.++++++|.+......+-.|-..+
T Consensus       204 ~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  204 AENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence               77899999999999997776666665555333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=5.8e-06  Score=89.91  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~------------   70 (414)
                      +.+......+...+++++|++++..++...|+...+|+.+|..|+..+++.+|...  .++.+-+.+.            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            45666777888999999999999999999999999999999999999988877655  5555554444            


Q ss_pred             -------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        71 -------~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                             .|+|.+|.||-.+|++++|...|+++++++|.|..+...++-..... ...++..+..
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence                   89999999999999999999999999999999999888887766555 4444444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.40  E-value=1.1e-06  Score=91.28  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |.+.+..|...+.+++|.+|..+++..+.++|-....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            34445556666778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      .+++-.+|...+..+++.+..+-.+.....
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENym  594 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYM  594 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence            888888888888888888876665444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=1.4e-06  Score=82.17  Aligned_cols=96  Identities=20%  Similarity=0.192  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      -|-+++-+|.+.|.|+.|+..+..||.++|+...+|..+|.+|+.+|+|.+|+..|.+|+.++|++....-.|..+-..+
T Consensus       117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999999999988888888887777


Q ss_pred             CChH---HHHHHHHHHHHh
Q 015029           84 EEYE---TAKVALEKGASL   99 (414)
Q Consensus        84 g~y~---~A~~~~~~a~~l   99 (414)
                      ++-.   .+...++.+..+
T Consensus       197 ~e~~~~~~~~~~~d~~~~i  215 (304)
T KOG0553|consen  197 NEPKSSAQASGSFDMAGLI  215 (304)
T ss_pred             cCCCcccccccchhhhhhc
Confidence            7765   444445544433

>TIGR00540 hemY_coli hemY protein

Probab=98.39  E-value=2e-05  Score=80.11  Aligned_cols=125  Identities=14%  Similarity=0.046  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-~a~~~~g~~~   80 (414)
                      +.....+|..++..|+|..|...+.++....|+....+...|.++..+|+++.|...+.++.+..|+.. .+...++.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            345678899999999999999999999999999888899999999999999999999999999999875 4666679999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      ...|+++.|...++..++..|+++.+...+..+....+.-......
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~  209 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI  209 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999999999998888888655554444333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=1e-06  Score=83.79  Aligned_cols=103  Identities=15%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHH
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p---~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      +|..++.+-|+.+|.+.|++.-.++++|+|+|.|.+.-++|+-++.+|.+|+...-   .-...||++|.+....|++..
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl  413 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL  413 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence            34444444444444444444444455666666666666666666666666665532   134556666666666666666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           89 AKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |.+||+-++..|+++.+....++-+.
T Consensus       414 A~rcfrlaL~~d~~h~ealnNLavL~  439 (478)
T KOG1129|consen  414 AKRCFRLALTSDAQHGEALNNLAVLA  439 (478)
T ss_pred             HHHHHHHHhccCcchHHHHHhHHHHH
Confidence            66666666666666665555554444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=9e-06  Score=88.86  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..+...|+|++|+++|.++++.+|+++.++..++.+|...+++++|+..+++++.++|.+... ..++.++..++
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~  183 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence            33447788888999999999999999999999999888899999999999999999999999985444 44555666677


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ++.+|+..|++++.++|++..+...+..+...+
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            777799999999999999888766655544333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.33  E-value=6.9e-06  Score=87.08  Aligned_cols=99  Identities=20%  Similarity=0.183  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|.++-..|+.++|+...-.|-.++|.+...|..++....++|++.+|+-||.+||.++|.+.+..++++..|.+
T Consensus       174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK  253 (895)
T ss_pred             hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCC
Q 015029           83 LEEYETAKVALEKGASLAP  101 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p  101 (414)
                      +|++..|+..|.+.+.++|
T Consensus       254 ~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  254 TGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=1.5e-06  Score=82.75  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +..++.++-..+++++|+++|..+++++|.|.++..-.|.-|+.-++.+-|+++|.+.+.+.-.+++.+.++|.||+..+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            34567777778888888888888888888888888778888888888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHHHHHhCC
Q 015029           85 EYETAKVALEKGASLAP  101 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p  101 (414)
                      +|+-++-+|++++....
T Consensus       373 Q~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTAT  389 (478)
T ss_pred             chhhhHHHHHHHHhhcc
Confidence            88888888888887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.32  E-value=1.1e-05  Score=79.71  Aligned_cols=100  Identities=18%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA-------------------------------------DRAQA   45 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~-------------------------------------~ra~~   45 (414)
                      +....+|..++..|++++|+..+.+++..+|++..++.                                     .+|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            34566788999999999999999999999888865443                                     33445


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        46 ~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      +..+|++++|+..+++++.++|.+..++..+|.+|+..|++++|..+|++++.+.|.
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            555566666666666666666666666666666666666666666666666666553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.31  E-value=4.6e-06  Score=83.58  Aligned_cols=89  Identities=15%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                      .+-.+|+++-.+|++++|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+++..|+.++|.+.+++
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCH
Q 015029           96 GASLAPGDS  104 (414)
Q Consensus        96 a~~l~p~~~  104 (414)
                      +++++|.-.
T Consensus       398 alrLsP~~~  406 (458)
T PRK11906        398 SLQLEPRRR  406 (458)
T ss_pred             HhccCchhh
Confidence            999999654

>TIGR00540 hemY_coli hemY protein

Probab=98.28  E-value=2e-05  Score=80.13  Aligned_cols=122  Identities=8%  Similarity=-0.064  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA   79 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~--~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~--~a~~~~g~~   79 (414)
                      -....|..+...|++++|+..+.++++..|++....  ..+...++..++...++..++++++.+|+++  ..+..+|.+
T Consensus       265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l  344 (409)
T TIGR00540       265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL  344 (409)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            456678899999999999999999999999987532  3344444556889999999999999999999  888899999


Q ss_pred             HHHcCChHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      ++++|+|++|..+|+  .++..+|++..+. .++.+...++........
T Consensus       345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       345 LMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHHH
Confidence            999999999999999  6788889777644 788888666665555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.25  E-value=9.1e-06  Score=86.76  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATA   79 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~   79 (414)
                      .+...++-+|-.|+|..+..++..++...-..   +..++.+|.+|..+|+|++|..+|-.++..++++ ..+++.+|+.
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm  351 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM  351 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence            45677899999999999999999999876444   4569999999999999999999999999999987 8899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      |...|+++.|..+|++++...|++......++.++...
T Consensus       352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            99999999999999999999999998888877766443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.24  E-value=1.6e-05  Score=82.85  Aligned_cols=89  Identities=16%  Similarity=0.110  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           18 FELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        18 y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                      ...|.....+++.+  +|.++.+|..+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|.+.|++
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45666666676664  777888999999999999999999999999999999 588999999999999999999999999


Q ss_pred             HHHhCCCCHHHH
Q 015029           96 GASLAPGDSRFT  107 (414)
Q Consensus        96 a~~l~p~~~~~~  107 (414)
                      ++.++|.++...
T Consensus       479 A~~L~P~~pt~~  490 (517)
T PRK10153        479 AFNLRPGENTLY  490 (517)
T ss_pred             HHhcCCCCchHH
Confidence            999999998643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.24  E-value=1.4e-05  Score=82.08  Aligned_cols=117  Identities=10%  Similarity=0.056  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .++.++...|..++|...+...+.+|...|...+.+.-.|..+..+|+-++|..+...+++.|+...-+|.-+|+++-.-
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN  120 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  120 (414)
                      .+|++|+.||..|+.++|+|.++..-+.-++.+++.-
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999888877777655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=4.1e-05  Score=72.69  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKV   91 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~---y~~A~~   91 (414)
                      ..+.+..+.-+..-|+.+|+|+.-|..+|.+|+.++++..|+..|.+|++|.|+++..+.-+|.+++...+   -.+|..
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            34577888889999999999999999999999999999999999999999999999999999999887664   568899


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .|.+++.+||.|......++...
T Consensus       215 ll~~al~~D~~~iral~lLA~~a  237 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAA  237 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHH
Confidence            99999999999999998888766

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=8.7e-06  Score=82.70  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      .+..|..+++.|+..+|+-.|..|++.+|.++++|..+|.++...++=..|+..+.+|++|+|++..++..||++|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCC
Q 015029           85 EYETAKVALEKGASLAP  101 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p  101 (414)
                      .=.+|..+|..=+...|
T Consensus       368 ~q~~Al~~L~~Wi~~~p  384 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKP  384 (579)
T ss_pred             hHHHHHHHHHHHHHhCc
Confidence            99999999987666554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.8e-06  Score=82.12  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .++.-|.-++.-|++.+|.++|.++..++|....+|+..|+.|...+..++|+.+|..|-++-|......+.+|.=|.++
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +++..|..+|.+++.+.|.|+-+...++-+.
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva  424 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVA  424 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence            9999999999999999999997666655433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.21  E-value=3.9e-06  Score=64.22  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP----NSAELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~---~P----~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      +..+...|..++..|+|++|+.+|.+++.+   .+    .-+.++.++|.+|..+|++++|+..+++|+.+.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            567889999999999999999999999976   22    226789999999999999999999999999863

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=4.1e-05  Score=75.11  Aligned_cols=129  Identities=17%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH---------------------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEA---------------------------   55 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~A---------------------------   55 (414)
                      +.+.-+|+.+...|+.++|+-+|..|+.+.|....+|..+-.||+..|++.+|                           
T Consensus       335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~  414 (564)
T KOG1174|consen  335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF  414 (564)
T ss_pred             hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec
Confidence            35667788888888888888888888888888777777777777777766654                           


Q ss_pred             ---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           56 ---------VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        56 ---------l~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                               ...+++++.++|....|...+|..+...|++.+++..+++.+...|++. +...++++-.+.+.-+..+..
T Consensus       415 ~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~  493 (564)
T KOG1174|consen  415 PDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEY  493 (564)
T ss_pred             cCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHH
Confidence                     4444445555556666667777777777777777777777776666544 666677776666666666665


Q ss_pred             HHHHHh
Q 015029          127 NYELLR  132 (414)
Q Consensus       127 ~~~~~~  132 (414)
                      .+..+|
T Consensus       494 y~~ALr  499 (564)
T KOG1174|consen  494 YYKALR  499 (564)
T ss_pred             HHHHHh
Confidence            555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.17  E-value=0.00011  Score=74.53  Aligned_cols=120  Identities=13%  Similarity=0.051  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADR-AQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATA   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~r-a~~~~kl~~~~~Al~~~~~Ai~l~p~~~~-a~~~~g~~   79 (414)
                      +......|..++..|+|+.|.....++-...+. +.+++.+ +.+..++|+++.|...+.+|.+.+|+... ..+..+.+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            345678899999999999999887776655433 4444444 55558999999999999999999998754 44566999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      +...|+++.|...+++..+.+|+++.+...+..++...++-..
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999998888855544333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.16  E-value=4.4e-05  Score=78.72  Aligned_cols=111  Identities=19%  Similarity=0.188  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP   67 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------~p   67 (414)
                      .+...|..++.+|+|+.|+..+..||+.        .|.-...+..+|..|..+++|.+|+..|++|+.+        +|
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4455889999999999999999999998        5555666667999999999999999999999977        23


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 015029           68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA-----PGDSRFTNLIKEFV  114 (414)
Q Consensus        68 ~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~-----p~~~~~~~~l~~~~  114 (414)
                      .-...+.++|.+|+..|+|++|..+|++++++-     ...+.+...+..+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            446689999999999999999999999998864     33455555544444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.16  E-value=5e-05  Score=72.44  Aligned_cols=124  Identities=17%  Similarity=0.162  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      +-..-++|-...+|++||..-.+.+.+.+..     +.+|+.+|..++...+.+.|+..+.+|+.-+|.+..|-..+|.+
T Consensus       144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v  223 (389)
T COG2956         144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV  223 (389)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence            3445566777777888888877777776665     56777788877777888888888888888888888888888888


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGD-SRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      +...|+|..|++.++.+++.||+- +.+...+..|+..+++.+....|+.
T Consensus       224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888888888888888888777763 3455556666666665555444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.16  E-value=4.6e-05  Score=79.16  Aligned_cols=69  Identities=22%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      +++.+|++|..+|++++|+..+++||...|..++.|+.+|.+|.++|++.+|..+++.+..+|..|.-+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            445556666666666666666666666666666666666666666666666666666666666655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=4.5e-05  Score=72.78  Aligned_cols=109  Identities=13%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-----~~~a~~~~g~~   79 (414)
                      +.+.|..+...|=|+.|-..|...++..-.-..++-.+..+|....+|++|+..+++...+.+.     ....|..+|..
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~  189 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence            3444555555555555555555544433333445555555555555555555555555555443     23344445555


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      +....+++.|+..+.++++-+|.+..+...++++
T Consensus       190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v  223 (389)
T COG2956         190 ALASSDVDRARELLKKALQADKKCVRASIILGRV  223 (389)
T ss_pred             HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence            5555555555555555555555544444444333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.6e-05  Score=77.84  Aligned_cols=109  Identities=19%  Similarity=0.209  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+.++-.|..+|..++|..|+.+-.++|+.+|++..+|+-.|.+++.+++.++|+-.|..|+.+.|...+.|--+..+|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ..|++.+|...-..+.+.-|.+......+
T Consensus       380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            99999999988888888777766555444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.12  E-value=9.4e-05  Score=65.55  Aligned_cols=101  Identities=23%  Similarity=0.237  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~   80 (414)
                      .....|+.+...|+|.+|..+|.+++. +..+++..+..++++.+.++++..|...++...+-+|.  .+..++.+|.+|
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            356789999999999999999999998 56788999999999999999999999999999999986  678899999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      ...|+|.+|...|+.++..-|+-.
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCCHH
Confidence            999999999999999999988643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.11  E-value=9e-05  Score=75.03  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .....|..+...|++++|...+.+++.. +.++.+...++.+  ..+++.+++..++..++.+|+++..++.+|.++...
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            3456788999999999999999999995 4455544444443  459999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      ++|++|...|++++.+.|++.. ...+..+...+++.......+.
T Consensus       342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998765 3467777766666555544333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.08  E-value=5.1e-05  Score=78.25  Aligned_cols=98  Identities=27%  Similarity=0.268  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------   67 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------   67 (414)
                      +..+...|..+...++|.+|+.+|.+||.+        +|.-+..+.++|.+|.+.|+|.+|..+|++|+++-.      
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~  320 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS  320 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence            344556899999999999999999999987        344478899999999999999999999999998732      


Q ss_pred             --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           68 --SMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        68 --~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                        .-...+..++.++..+++|++|...|++++++
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence              23556777888888899999999888888765

>PRK15331 chaperone protein SicA; Provisional

Probab=98.06  E-value=1.8e-05  Score=69.01  Aligned_cols=94  Identities=12%  Similarity=-0.049  Sum_probs=85.1

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        32 ~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      .++.-...+..|.-++..|+|++|...|..++.+++.+++.++-+|.|+..+++|+.|+.+|..+..++++|+......+
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            34446788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhh
Q 015029          112 EFVGLLMQNAVYLC  125 (414)
Q Consensus       112 ~~~~~~~~~~~~~~  125 (414)
                      .|.-.++....+..
T Consensus       113 qC~l~l~~~~~A~~  126 (165)
T PRK15331        113 QCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHHHhCCHHHHHH
Confidence            99977777666543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.06  E-value=5.8e-05  Score=82.28  Aligned_cols=112  Identities=12%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----------------   65 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----------------   65 (414)
                      ..++..|.+|-+.|++++|+..|+++|+.+|+|+.++.++|..|... ++++|+..+.+|+..                 
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            35788899999999999999999999999999999999999999999 999999999999866                 


Q ss_pred             ---CCCCHHHHHH--------HH------------HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           66 ---EPSMSKAYWR--------KA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        66 ---~p~~~~a~~~--------~g------------~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                         +|.+...+++        ++            .+|..+++|++++..|+.+++++|+|..++..+..|.+
T Consensus       196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence               2332222111        23            68888999999999999999999999999999999983

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.05  E-value=0.00022  Score=66.45  Aligned_cols=118  Identities=20%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~   75 (414)
                      +..+++.|...+..|+|.+|+..|..+....|.+   ..+.+.++.++++.++|.+|+..+++-+++.|.+   .-++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            5679999999999999999999999999988876   5788999999999999999999999999999864   458888


Q ss_pred             HHHHHHHcCC--------hHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHhh
Q 015029           76 KATACMKLEE--------YETAKVALEKGASLAPGDSR---FTNLIKEFVGLLMQ  119 (414)
Q Consensus        76 ~g~~~~~lg~--------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~~  119 (414)
                      +|.+++..=+        -..|...|+..+..-|+.+-   +...+..+...+..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~  168 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG  168 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence            9999776443        25788888889999998654   33334444433433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.03  E-value=8.5e-06  Score=63.42  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA   62 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~A   62 (414)
                      .+...|.++|..|+|++|+..+++ +..++.+..+++.+|.||+++|+|++|+..+++|
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            356689999999999999999999 8888888888889999999999999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.02  E-value=0.00017  Score=62.07  Aligned_cols=96  Identities=21%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN   60 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------~~~~~~ra~~~~kl~~~~~Al~~~~   60 (414)
                      +.+...|..+...++...++..|.+++.+....                      ..++..++.++...|++++|+..+.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            345667788888999999999999999984332                      4566677888888999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        61 ~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      +++.++|.+-.+|..+-.+|..+|++..|+..|+++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=2.6e-05  Score=69.69  Aligned_cols=68  Identities=28%  Similarity=0.388  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA   72 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a   72 (414)
                      +.++|.++.+.+.++.||..+++||+++|....++..||.+|.++..|++|+.||.+.++++|....+
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999987543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.99  E-value=0.00013  Score=69.52  Aligned_cols=99  Identities=9%  Similarity=-0.034  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHH
Q 015029           36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTN  108 (414)
Q Consensus        36 ~~~~~~ra~~~-~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~  108 (414)
                      ....+..|..+ ++.|+|++|+..|+..+...|+.   +.++|.+|.+|+..|+|++|+..|++++...|+++   .+..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888887 56799999999999999999987   68999999999999999999999999999998864   4555


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHhhh
Q 015029          109 LIKEFVGLLMQNAVYLCWNYELLRRV  134 (414)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (414)
                      .++.+...++....+...+..+.+..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            55666655555555555554444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.98  E-value=2.4e-05  Score=83.74  Aligned_cols=111  Identities=15%  Similarity=0.076  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+..+|-.+...+++-.|+..|+.||+.+|.+..++..+|.+|...|+|.-|+..|.+|..++|.+.-+.|..+.....+
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            34568888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |+|.+|+..+...+........++..+..+.
T Consensus       644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  644 GKYKEALDALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999987766555444444444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.98  E-value=0.00011  Score=77.06  Aligned_cols=118  Identities=18%  Similarity=0.067  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..+...++-++|...+.+|-.+.|-.+..|+.+|.++...|.+.+|...|..|+.++|+++...--+|.++...|
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG  732 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence            44667778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           85 EYETAKV--ALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        85 ~y~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      +-..|..  .+..++++||.|..++..++.+-+.++....
T Consensus       733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            9887777  9999999999999999999999866665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.98  E-value=0.00014  Score=60.79  Aligned_cols=91  Identities=21%  Similarity=0.150  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI  110 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~---~~~~~~~l  110 (414)
                      .+++++|.+|-.+|+.++|+..|++|+..+..   ...+++.+|.+|..+|++++|...|+.++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            47899999999999999999999999998654   3679999999999999999999999999999888   66666666


Q ss_pred             HHHHHHHhhhhhhhhhH
Q 015029          111 KEFVGLLMQNAVYLCWN  127 (414)
Q Consensus       111 ~~~~~~~~~~~~~~~~~  127 (414)
                      .-+...++.......|.
T Consensus        82 Al~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHHCCCHHHHHHHH
Confidence            66654455544444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.95  E-value=3.4e-05  Score=80.34  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=93.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------------HHHHHHHHccCHHHHHHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFA----------------------------DRAQASIKLQNFTEAVADA   59 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~----------------------------~ra~~~~kl~~~~~Al~~~   59 (414)
                      ...+|...|+..+|-....+-++ .|+++.+|+                            ..|..++..++|.++.+++
T Consensus       430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl  508 (777)
T KOG1128|consen  430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL  508 (777)
T ss_pred             HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence            44555666666666655555555 333333333                            3333334558999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           60 NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        60 ~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +..++++|.....||++|.|..+++++..|..+|..++.++|++.+....+..++..++++.+..+-..+
T Consensus       509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E  578 (777)
T KOG1128|consen  509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE  578 (777)
T ss_pred             HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999777777666544433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00014  Score=72.03  Aligned_cols=111  Identities=17%  Similarity=0.090  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-------------------------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-------------------------------   51 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-------------------------------   51 (414)
                      +-+.+.+++|-...+..+||++|.++..+-|+++.++..+|..|-+.|+                               
T Consensus       559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid  638 (840)
T KOG2003|consen  559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID  638 (840)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence            3445555555555555555555555555555555555555444433331                               


Q ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           52 ---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        52 ---~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                         +++|+.+|++|--+.|+..+-.+..+.|+.+.|+|..|...|+...+..|.|-.+...+-++
T Consensus       639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence               22344444444444444444444455555555555555555555555555554444444333

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.95  E-value=0.00027  Score=73.45  Aligned_cols=96  Identities=20%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      ++-.+..+-..|+|++|+.+.++||...|..+++|+.+|.+|-+.|++.+|...++.|-.+|..+.-..-..+..+++.|
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            45567888899999999999999999999999999999999999999999999999999999999888889999999999


Q ss_pred             ChHHHHHHHHHHHHhC
Q 015029           85 EYETAKVALEKGASLA  100 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~  100 (414)
                      ++++|...+....+-+
T Consensus       277 ~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  277 RIEEAEKTASLFTRED  292 (517)
T ss_pred             CHHHHHHHHHhhcCCC
Confidence            9999999998776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.94  E-value=9.6e-06  Score=51.92  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029           59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        59 ~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.94  E-value=9.4e-05  Score=76.22  Aligned_cols=115  Identities=15%  Similarity=0.041  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.+.-.|..+...|+-++|..+...++..++.+..+|..+|..+...++|.+|+.||..|+.++|+|...+.-++....+
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            35667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +++|+.....-.+.+++.|.....+..++.++-.+
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            99999999888889999998776555555554333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.92  E-value=2.4e-05  Score=53.09  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      .++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456667777777777777777777777777777777766664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.90  E-value=0.00013  Score=78.34  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      |+......|..+...++|++||++..++|+.+|+|..+++-+|.++..++. .++|-..|-.|..++|++..||-.+|..
T Consensus         1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL   80 (1238)
T KOG1127|consen    1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL   80 (1238)
T ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence            455667789999999999999999999999999999999999999999988 9999999999999999999999999999


Q ss_pred             HHH---cCChHHHHHHHHHHHHhCCCCH
Q 015029           80 CMK---LEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        80 ~~~---lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      |.+   .-.++++..+|++++.+.++..
T Consensus        81 ye~~~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   81 YERYNDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence            887   4568899999999988877654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.90  E-value=0.00055  Score=62.67  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~-----------~~~~Al~~~~~Ai~l~p~   68 (414)
                      +.++..|.+++..|+|..|+..|++.+...|++   +.+++.+|.+++.+.           ...+|+..|+..+...|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            457889999999999999999999999999887   578999999987763           345899999999999997


Q ss_pred             CH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           69 MS-----------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        69 ~~-----------------~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      ..                 .--+..|..|++.|.|..|..-|+.+++.-|+.......+..
T Consensus       123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~  183 (203)
T PF13525_consen  123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR  183 (203)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence            42                 224557889999999999999999999999998765554433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.89  E-value=2.2e-05  Score=49.95  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45555666666666666666666666655554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.89  E-value=0.00021  Score=73.75  Aligned_cols=115  Identities=23%  Similarity=0.195  Sum_probs=88.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHHccCHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNS---------------------------------AELFADRAQASIKLQNFTE   54 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------------------------~~~~~~ra~~~~kl~~~~~   54 (414)
                      .+...+..|+...|...+..|++.+|++                                 ...|+.-+....-+++.++
T Consensus       590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ee  669 (913)
T KOG0495|consen  590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEE  669 (913)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHH
Confidence            3445555566666666666666666665                                 2344444455555678999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        55 Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      |++.++.++...|++.+.|+.+|+++..+++.+.|...|..++++.|...-+...+.++++..++-.+
T Consensus       670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r  737 (913)
T KOG0495|consen  670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR  737 (913)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999999888888888866554333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.87  E-value=8.4e-05  Score=71.63  Aligned_cols=101  Identities=22%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 015029            2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~-g~y~~Ai~~y~~AL~~~P--~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------   68 (414)
                      |..+...|..+... |++++|+.+|.+|+....  +.    ..++.+.|.++.++++|++|+..|+++....-.      
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            45677788888888 999999999999999722  12    568889999999999999999999999976422      


Q ss_pred             CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           69 MS-KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        69 ~~-~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .. ..++..++|++.+|++..|...|++....+|.
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            12 45678899999999999999999999999885

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=4e-05  Score=48.50  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      ++++.+|.+++.+|+|++|+.+|++++.++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666777777777777777777776666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.84  E-value=0.00034  Score=72.36  Aligned_cols=111  Identities=16%  Similarity=0.048  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      -++..++.....++.++|++++.++|+..|+...+|+.+|+++..+++.+.|...|..-++.-|..+..|..++.+-...
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            34556667777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |..-.|...|++++..+|.+..+....-+++
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            9999999999999999999986544443444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.84  E-value=9.1e-05  Score=67.11  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      |++.+.-.|.-+...|+|+.|.+.|+..++++|..--++.|||.+++--|+|.-|.+++.+-..-||.++
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            6777888899999999999999999999999999999999999999999999999999998888877643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.84  E-value=0.00042  Score=69.56  Aligned_cols=105  Identities=19%  Similarity=0.156  Sum_probs=94.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      +-..++|+.|+.+|.+..+.+|+   +...++.+|+..++-.+|++.+.+++...|.+...+...|..|...++|+.|+.
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            34467899999999998888876   455688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ..+++..+.|++...+..|++|+..+++
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999955544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.83  E-value=0.00098  Score=62.83  Aligned_cols=117  Identities=15%  Similarity=0.088  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANRA   62 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~------------------~~~Al~~~~~A   62 (414)
                      .....|.++++.++|++|+..|++.++..|++   +.+++.+|.+++.++.                  -.+|+..|+..
T Consensus        71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l  150 (243)
T PRK10866         71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL  150 (243)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence            45778999999999999999999999998887   5789999999766541                  25788999999


Q ss_pred             HHhCCCCH---HH--------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHhhh
Q 015029           63 IELEPSMS---KA--------------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL---IKEFVGLLMQN  120 (414)
Q Consensus        63 i~l~p~~~---~a--------------~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~---l~~~~~~~~~~  120 (414)
                      ++.-|+..   +|              -+..|.-|++.|.|..|+.-|+.++..-|+-+.....   +.++...++..
T Consensus       151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~  228 (243)
T PRK10866        151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN  228 (243)
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence            99999742   22              3346667999999999999999999999886654444   44444333333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=4.2e-05  Score=48.58  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~   68 (414)
                      +.+|+++|.+|+.+++|++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            356788888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.78  E-value=3.1e-05  Score=49.55  Aligned_cols=33  Identities=33%  Similarity=0.615  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015029           24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAV   56 (414)
Q Consensus        24 ~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al   56 (414)
                      .|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            388999999999999999999999999999986

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.00028  Score=66.76  Aligned_cols=86  Identities=20%  Similarity=0.113  Sum_probs=80.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      .+.+..+|..||+.++.-.+.+|.+-..+..+|.||+...+|..|..||++...+.|......++.++.++..+.|.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 015029           91 VALEKG   96 (414)
Q Consensus        91 ~~~~~a   96 (414)
                      +.....
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            877654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.77  E-value=5.3e-05  Score=72.74  Aligned_cols=66  Identities=20%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      +-.+|+-|++.|.|++|+.||.+++.++|.++-.|.++|.+|+++.+|..|...|..++.|+-.--
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~  165 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV  165 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence            456899999999999999999999999999999999999999999999999999999998886433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0014  Score=62.31  Aligned_cols=115  Identities=20%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--------------------------
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--------------------------   57 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~--------------------------   57 (414)
                      ..+..+..+...|++.+|...|..++...|.+..+...++.||+..|+.+.|..                          
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999999999998876522                          


Q ss_pred             --------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Q 015029           58 --------DANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        58 --------~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p--~~~~~~~~l~~~~~~~~  118 (414)
                              ++.+.+..+|++..+.+.+|..|...|+++.|.+.+-..++.+-  .|...+..+-.+-...+
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                    33333445788999999999999999999999999888777654  34555555555554443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.71  E-value=0.0011  Score=54.44  Aligned_cols=94  Identities=23%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------h
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIKLQNFTEAVADANRAIE-------L   65 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~------------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-------l   65 (414)
                      ....|...+..|-|++|...|.+|......            ++.++..++.++.++|+|++++..+++++.       |
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            345677788899999999999999987422            267888899999999999999888888884       3


Q ss_pred             CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           66 EPS----MSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        66 ~p~----~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      +.+    ...+.|.+|+++..+|+.++|+..|+.+-+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            444    356889999999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.70  E-value=0.00023  Score=68.85  Aligned_cols=115  Identities=16%  Similarity=0.037  Sum_probs=78.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .-.-.+++..++++.|...+..+-+.+.++......-|.+.+..|  .+.+|...|+......+..+..+..+|.|+..+
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            345567788888888888888776666554433333333333444  588888888887766667788888888888888


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN  120 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  120 (414)
                      |+|++|...+.+++..+|.++.+...+.-|...++..
T Consensus       215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            8888888888888888888887777776666555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.00038  Score=67.33  Aligned_cols=97  Identities=21%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---------------------------------
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE---------------------------------   54 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~---------------------------------   54 (414)
                      .|.++|..|+|++|+..|+-+...+--+..+..++|-|++-+|.|.+                                 
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            57899999999999999988877655566778888888877775555                                 


Q ss_pred             ---------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           55 ---------------------------AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        55 ---------------------------Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                                                 |+..|.+++.-+|.....-.++|.||+.+.-|+-+.+.+.-.++..|+..
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence                                       45555555555555555555666667777777666666666666666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.66  E-value=0.00011  Score=49.73  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      +.+++.+|.+|..+|++++|...|+++++.+|+|..+...+.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3678999999999999999999999999999999988877654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.0005  Score=66.52  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-H
Q 015029           11 EAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-E   87 (414)
Q Consensus        11 ~~~~~g--~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y-~   87 (414)
                      ..+..|  .+.+|.-.|++..+..+.++..+..+|.|++.+|+|++|...+..|+..+|.++.+..+++.+...+|+- +
T Consensus       174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~  253 (290)
T PF04733_consen  174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE  253 (290)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred             HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence            334444  6999999999977777888999999999999999999999999999999999999999999999999998 6


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           88 TAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      .+.+.+.+....+|.++.+.....+
T Consensus       254 ~~~~~l~qL~~~~p~h~~~~~~~~~  278 (290)
T PF04733_consen  254 AAERYLSQLKQSNPNHPLVKDLAEK  278 (290)
T ss_dssp             HHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            6778888888999999876655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.00013  Score=46.04  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~   69 (414)
                      .+++.+|.+|+.+|+|++|+.+|++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.61  E-value=0.00029  Score=55.94  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC------C---------CCeeeecccccccccCCcceEE
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP------G---------EEAYHFQPRLFGKIIPAKCRYE  278 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~------~---------~~~y~~~~~L~~~I~p~~s~~~  278 (414)
                      |+||+.+++.+.|.+.++|+.++++.|.+.++ .|.|+....      +         ...|.-.+.|-..|+++..+-.
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            67999999999999999999999999999874 788876421      1         1146777889999999988888


Q ss_pred             EeCcEEEEEEee
Q 015029          279 VLSTKVEIRLAK  290 (414)
Q Consensus       279 v~~~kiei~L~K  290 (414)
                      ....-+.|+|-|
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            888888998865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.60  E-value=0.00039  Score=49.17  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +.+|.+|++++++|+|..|..+++.+++++|+|.++......++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            468899999999999999999999999999999998888777763

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=9.7e-05  Score=71.35  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP---NS----------------AELFADRAQASIKLQNFTEAVADANRAI   63 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P---~~----------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai   63 (414)
                      +..++.|+..|+.++|..|+.-|.+++..-.   .+                ...+.+.+.+-++++.+..|+..+..++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            3456778899999999999999999887421   11                3456778899999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        64 ~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +.++....+|||++.++..+.+++.|++.++.+....|.+..+...+.......
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999999999999999888877766433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.0007  Score=65.53  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029           10 KEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus        10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      ..+....||..|+.++.-.+..+... ...-.-+|.|++.+|+|++|+..|..+...+....+.+.++|.|+|-+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            46778899999999998887654332 24556689999999999999999999999887889999999999999999999


Q ss_pred             HHHHHHHH
Q 015029           89 AKVALEKG   96 (414)
Q Consensus        89 A~~~~~~a   96 (414)
                      |.....++
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98876653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.53  E-value=0.00066  Score=58.05  Aligned_cols=72  Identities=24%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      .+..++..|...++.|+|.+|+..|+.+....|.   -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            3678899999999999999999999999999885   57899999999999999999999999999999998863

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00045  Score=59.86  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=69.9

Q ss_pred             CccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---------------CCeeeecccccccccCCcceEE
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYE  278 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~y~~~~~L~~~I~p~~s~~~  278 (414)
                      +.||.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+               ...|.-.+.|...|+|+..+-+
T Consensus        41 P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~  120 (146)
T COG0071          41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAK  120 (146)
T ss_pred             CcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeE
Confidence            3589999999999999999999999999999999999976543               1247788899999999988888


Q ss_pred             EeCcEEEEEEeeCCC
Q 015029          279 VLSTKVEIRLAKAEP  293 (414)
Q Consensus       279 v~~~kiei~L~K~~~  293 (414)
                      ....-+.|.|.|..+
T Consensus       121 ~~nGvL~I~lpk~~~  135 (146)
T COG0071         121 YKNGLLTVTLPKAEP  135 (146)
T ss_pred             eeCcEEEEEEecccc
Confidence            888899999999764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.51  E-value=0.00029  Score=67.90  Aligned_cols=85  Identities=22%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             HcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHH
Q 015029           14 IDDYFELAYDLYSQAIEIS--PNS----AELFADRAQASIKL-QNFTEAVADANRAIELEP--S----MSKAYWRKATAC   80 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~~--P~~----~~~~~~ra~~~~kl-~~~~~Al~~~~~Ai~l~p--~----~~~a~~~~g~~~   80 (414)
                      +..++.+|+.+|.+|+.+.  -++    +.++.++|.+|... +++++|+..|++|+.+-.  +    ...++...|.++
T Consensus        86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            3335555555555555431  111    34455555555554 555555555555554421  0    123444555555


Q ss_pred             HHcCChHHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGAS   98 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~   98 (414)
                      ..+|+|++|+..|++...
T Consensus       166 ~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHH
Confidence            555555555555555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.49  E-value=0.00074  Score=59.72  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (414)
Q Consensus         2 Ae~~~~~g~~~~~~----------g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-----------~~~~Al~~~~   60 (414)
                      ++.+.+-|.+++..          .-+++|+.-|.+||.++|+...+++++|.+|..++           .|++|..+|+
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            34555566655543          34788999999999999999999999999999875           4888999999


Q ss_pred             HHHHhCCCCH
Q 015029           61 RAIELEPSMS   70 (414)
Q Consensus        61 ~Ai~l~p~~~   70 (414)
                      +|+.++|.+.
T Consensus       105 kAv~~~P~ne  114 (186)
T PF06552_consen  105 KAVDEDPNNE  114 (186)
T ss_dssp             HHHHH-TT-H
T ss_pred             HHHhcCCCcH
Confidence            9999999875

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.0019  Score=60.79  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 015029           39 FADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKE  112 (414)
Q Consensus        39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~  112 (414)
                      +++-|.-|++.|+|..|..-|..-+...|+   .+.|+|-||.++|.+|+|++|...|..+.+-.|+++   +....++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            789999999999999999999999999997   578999999999999999999999999999888765   45666777


Q ss_pred             HHHHHhhhhhhhhhHHHHH
Q 015029          113 FVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~  131 (414)
                      |...+++...+...+.++.
T Consensus       224 ~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         224 SLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            7766666666555544443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.0038  Score=64.07  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------------------   67 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------------------   67 (414)
                      +.++.++|+.+..++|+..++   -.++.+..++..+|+.++++++|++|+..|+..++-+.                  
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            688999999999999999998   35566677899999999999999999999999864432                  


Q ss_pred             -------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHH-------HHHHHHHHHHHHhh
Q 015029           68 -------------SMSKAYWRKATACMKLEEYETAKVALEKGASLA--------PGDSR-------FTNLIKEFVGLLMQ  119 (414)
Q Consensus        68 -------------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~--------p~~~~-------~~~~l~~~~~~~~~  119 (414)
                                   +....+|+.|.++...|+|.+|++.++.++++.        ..+..       ++..+.-+..++++
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                         145678999999999999999999999994431        12222       34444555555566


Q ss_pred             hhhhhhhHH
Q 015029          120 NAVYLCWNY  128 (414)
Q Consensus       120 ~~~~~~~~~  128 (414)
                      .+.....+.
T Consensus       240 t~ea~~iy~  248 (652)
T KOG2376|consen  240 TAEASSIYV  248 (652)
T ss_pred             hHHHHHHHH
Confidence            666655333

>PRK10941 hypothetical protein; Provisional

Probab=97.41  E-value=0.0018  Score=61.77  Aligned_cols=79  Identities=11%  Similarity=0.094  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ...+.++=.+|++.++++.|+++.+.++.++|+++.-+.-+|.+|+++|.+..|...|+..++..|+++........+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            3566778889999999999999999999999999999999999999999999999999999999999997665555544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.40  E-value=0.0047  Score=66.17  Aligned_cols=111  Identities=12%  Similarity=0.017  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ++..+---.+...+++.+|+...++.++..|+..-+....|..++++|++++|..+++..-.+.+++-..+--+-.||..
T Consensus        10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD   89 (932)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence            33344445677889999999999999999999999999999999999999999988888878888888888889999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++++++|..+|+++...+|+ ......+=.+.
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay  120 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPS-EELLYHLFMAY  120 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence            99999999999999999999 44444433333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.36  E-value=0.00043  Score=68.12  Aligned_cols=96  Identities=9%  Similarity=0.149  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CCHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE----P--SMSKA   72 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p--~~~~a   72 (414)
                      -++...|..+++.|++...+..|..||+..-.+    ..+|.++|.+|+.+++|++|+.+-..=+.+.    .  .-.++
T Consensus        18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs   97 (639)
T KOG1130|consen   18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS   97 (639)
T ss_pred             HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence            356788999999999999999999999987666    4688999999999999999998765555443    2  24567


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           73 YWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      --++|..+..+|.|++|+.|+.+-+.
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd  123 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLD  123 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhH
Confidence            78899999999999999999887443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00054  Score=64.93  Aligned_cols=93  Identities=22%  Similarity=0.255  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC----------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----PS----------   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~----p~----------   68 (414)
                      ....+.|..+|+.|+|+.|++.|+.|++...-++.+-+++|.||++.++|..|+......|+.+    |.          
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi  224 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI  224 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence            4467789999999999999999999999998889999999999999999999999988888763    31          


Q ss_pred             ---------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           69 ---------------MSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        69 ---------------~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                                     ..+|+...+-++|+.++|+.|.+.+..
T Consensus       225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence                           234666778889999999998887753

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.28  E-value=0.0015  Score=64.59  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--------S----------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--------~----------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      ....|...|++++|..|+..|..||++...        .          ..+-..+..||+++++.+.|+...-+.|.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            455677888888888888888888887322        1          2345678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      |....-|++.|.|...+.+|.+|.+.+.-+
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998876654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0046  Score=63.53  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.++..-+.+-.+++|++|+....+.|...|++..++...-.|+++++.|++|+.+.+.-..+.-.+ ...|.+|.|.|+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence            4566677777888888888888888888888876666555555555555555553322221111111 111445555555


Q ss_pred             cCChHHHHHHHH
Q 015029           83 LEEYETAKVALE   94 (414)
Q Consensus        83 lg~y~~A~~~~~   94 (414)
                      +++.++|+.++.
T Consensus        92 lnk~Dealk~~~  103 (652)
T KOG2376|consen   92 LNKLDEALKTLK  103 (652)
T ss_pred             cccHHHHHHHHh
Confidence            555555555444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.25  E-value=0.019  Score=50.12  Aligned_cols=97  Identities=26%  Similarity=0.267  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACM   81 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~-~~~kl~~~~~Al~~~~~Ai~l~p---~~~~a~~~~g~~~~   81 (414)
                      ...|......+++..|+..+..++...+.+.......+. ++...+++..|+..+.+++.+++   .....++.++..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (291)
T COG0457          99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE  178 (291)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence            344444444555555555555555544443333333333 45555555555555555544443   23334444444444


Q ss_pred             HcCChHHHHHHHHHHHHhCCC
Q 015029           82 KLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      ..+++..|...+.+++...+.
T Consensus       179 ~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         179 ALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HhcCHHHHHHHHHHHHhhCcc
Confidence            555555555555555555544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.0011  Score=66.44  Aligned_cols=120  Identities=12%  Similarity=0.066  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h-------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIE-L-------   65 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~A-L~~~P~--------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-l-------   65 (414)
                      ..+.-+.+..|..|+|.+|..++... +...|.        ...++.|+|-+|++++.|.-+...|.+|++ .       
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            45677889999999999999987552 333333        234557899999999999999999999996 1       


Q ss_pred             -CC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           66 -EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        66 -~p---------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                       .|         ..-+..|+.|+.|.+.|+.-.|.+||.++......|+.++..+++|-....+...
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l  387 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGL  387 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhh
Confidence             12         1457899999999999999999999999999999999998888888855544443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.16  E-value=0.004  Score=50.72  Aligned_cols=93  Identities=22%  Similarity=0.238  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY   73 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~kl~-----------~~~~Al~~~~~Ai~l~p~~~~a~   73 (414)
                      .+..+|.+||+-+|+++....+...+++.   .++..-|.+++++.           -+-.|+.+|.+++.+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999877764   66777788887763           23458999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           74 WRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        74 ~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      |.+|.-+-....|++++.-.++++.+.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999988888888999999888887653

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.13  E-value=0.0019  Score=51.26  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------C---------CeeeecccccccccCCcceE
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY  277 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~y~~~~~L~~~I~p~~s~~  277 (414)
                      +.|++++++.+.|.+.++|+.++++.|.+.++.|.|+.....        +         ..|.-.+.|- .|+++..+.
T Consensus         2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A   80 (93)
T cd06471           2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA   80 (93)
T ss_pred             ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence            679999999999999999999999999999999998754321        0         0244445564 688888888


Q ss_pred             EEeCcEEEEEEee
Q 015029          278 EVLSTKVEIRLAK  290 (414)
Q Consensus       278 ~v~~~kiei~L~K  290 (414)
                      +....-+.|+|.|
T Consensus        81 ~~~dGvL~I~lPK   93 (93)
T cd06471          81 KYENGVLKITLPK   93 (93)
T ss_pred             EEECCEEEEEEcC
Confidence            8888888888865

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.12  E-value=0.0012  Score=65.17  Aligned_cols=126  Identities=13%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C--CH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEP----S--MS   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p----~--~~   70 (414)
                      +.+-+.|+.+|-.|+|+.||.+-..-|.+...      --.++.|+|.||+-+|+++.|+..|.+++.|.-    .  -.
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            44566777788888888888776666555322      256778888888888888888887777665532    1  24


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG------DSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      ...|-+|..|+.+.+|+.|+.++.+-+.+...      ....--.++.+...++...+++.+..
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            45677788888888888888777764443221      11222335666666666666655443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.002  Score=59.54  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~   75 (414)
                      +.+...+++..|+|-+++++.+..|...|.|..+|+.||.++...=+..+|.+||.++++++|....+..|
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999986655444

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.11  E-value=0.0023  Score=49.75  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=63.2

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeecccccccccCCcceEEEeCc
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST  282 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~~~  282 (414)
                      +++++++.+.|.|.++|+.++++.|.+.++.|.|+.....              ...|.-.+.|-..|+++..+..+...
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            5788999999999999999999999999999999854321              24588888999999999999999988


Q ss_pred             EEEEEEee
Q 015029          283 KVEIRLAK  290 (414)
Q Consensus       283 kiei~L~K  290 (414)
                      -++|.+.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            88988865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.10  E-value=0.00092  Score=42.16  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ++|+.+|.+|..+|++++|..+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3556666666666666666666666666555

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.10  E-value=0.014  Score=50.91  Aligned_cols=94  Identities=27%  Similarity=0.370  Sum_probs=81.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCh
Q 015029           11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY   86 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~P---~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg~y   86 (414)
                      .++..|+++.|+..|.+++...|   .....+..++..+...+++..|+..+.+++...+. ...++..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            78889999999999999988776   45667777777788889999999999999999988 688999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 015029           87 ETAKVALEKGASLAPGDS  104 (414)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~  104 (414)
                      ..|...+..++...|...
T Consensus       219 ~~a~~~~~~~~~~~~~~~  236 (291)
T COG0457         219 EEALEYYEKALELDPDNA  236 (291)
T ss_pred             HHHHHHHHHHHhhCcccH
Confidence            999999999999888733

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.03  E-value=0.039  Score=54.43  Aligned_cols=119  Identities=14%  Similarity=0.071  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~   80 (414)
                      |......|...+..|+|.+|..+..++-+..+....+|..-+.+--.+|+++.|-.+..+|-++.++ ....+..++..+
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            4556778889999999999999999988888888888888899999999999999999999999443 567889999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN  120 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  120 (414)
                      ...|+|..|.....++++..|.++.+.....+++...+.-
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~  203 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW  203 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence            9999999999999999999999999988888888555443

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.03  E-value=0.0034  Score=50.60  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEeCcE
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK  283 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~~k  283 (414)
                      ||+++++.+.|.+.++|+.++++.|.+.++.|.|+....    ++         ..|.-.+.|-..|+++..+.++...-
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv   80 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV   80 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence            789999999999999999999999999999988885432    12         13666778989999999899998889


Q ss_pred             EEEEEeeCCC
Q 015029          284 VEIRLAKAEP  293 (414)
Q Consensus       284 iei~L~K~~~  293 (414)
                      +.|++.|...
T Consensus        81 L~I~~pk~~~   90 (102)
T PF00011_consen   81 LTITIPKKEE   90 (102)
T ss_dssp             EEEEEEBSSS
T ss_pred             EEEEEEcccc
Confidence            9999999753

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.0026  Score=67.43  Aligned_cols=116  Identities=25%  Similarity=0.401  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl--~~~~~Al~~~~~Ai~l~p~~~~a~~~   75 (414)
                      +.++...|+.+|..++|..|.--|..++.+-|.+    +..+.+++.||+.+  ++|..++..++.|+...|.+..++++
T Consensus        53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~  132 (748)
T KOG4151|consen   53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK  132 (748)
T ss_pred             HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence            3467889999999999999999999999988743    56778888888765  79999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ++.+|..+++++-|.+.+.-....+|.+..+..-..++++.+
T Consensus       133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            999999999999999998888899999977666566666544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.97  E-value=0.014  Score=49.19  Aligned_cols=80  Identities=13%  Similarity=0.163  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           36 AELFADRAQASIKLQ---NFTEAVADANRAIE-LEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~-l~p~-~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ....+++|.|+.+..   +..+.+.+++..+. -.|. ..+..|++|+.++++++|+.|+.++..+++.+|+|.++....
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            567889999998864   57789999999997 4443 567899999999999999999999999999999999988877


Q ss_pred             HHHHH
Q 015029          111 KEFVG  115 (414)
Q Consensus       111 ~~~~~  115 (414)
                      ..++.
T Consensus       112 ~~ied  116 (149)
T KOG3364|consen  112 ETIED  116 (149)
T ss_pred             HHHHH
Confidence            77763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.96  E-value=0.0016  Score=41.06  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~   68 (414)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777777777777777777777777777763

...

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=96.95  E-value=0.0013  Score=65.02  Aligned_cols=85  Identities=15%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             ccccccCCCeEEEEEEeCC-CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC-cEEEEEEeeCC
Q 015029          215 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAE  292 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~  292 (414)
                      -|-|.|+.+.|.|++.++. ++..++.|.+..+.|.+.+.    ..-.|...||+.|..+.|.|.+.- .++|+.|.|++
T Consensus       291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d  366 (596)
T KOG4379|consen  291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD  366 (596)
T ss_pred             cceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence            5999999999999998765 56688999998888777653    134567789999999999999876 69999999995


Q ss_pred             C-CCCCccccCC
Q 015029          293 P-IQWSSLEFSK  303 (414)
Q Consensus       293 ~-~~W~~L~~~~  303 (414)
                      . ..|++|-..+
T Consensus       367 e~~twprL~~~d  378 (596)
T KOG4379|consen  367 EIQTWPRLFAQD  378 (596)
T ss_pred             cccccchheeec
Confidence            4 8999997554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.91  E-value=0.0045  Score=43.75  Aligned_cols=43  Identities=21%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      ++++.+|.+|+++|+|.+|+.+++.+++++|++..|.-....+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4688899999999999999999999999999998876554443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=0.01  Score=61.46  Aligned_cols=96  Identities=18%  Similarity=0.136  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      -+.+.|..+|+.++|..+++.|...+..-|.+      +....+++.||+++.+++.|+..++.|-+.+|.++...+...
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            36788999999999999999999999886665      567788999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHh
Q 015029           78 TACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        78 ~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .+....|.-.+|+.+.......
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999998876654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.83  E-value=0.0054  Score=62.97  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=92.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029           13 FIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      -..|+...|+..+..|+-..|.. ...+.++|+++++-+-..+|-..+.+++.+....+..+|-+|.+|..+.+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            34789999999999999988864 35688999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .|+.++.++|+++.+...+..+.
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999888876654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.81  E-value=0.0078  Score=62.26  Aligned_cols=86  Identities=22%  Similarity=0.172  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHH
Q 015029           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      .+...|.+++...+...|+.+..++..|..+...|+.++|+..|++++.....    ...++|.+|-++..+++|++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            34455555555555555555555555555555555666666555555532221    23355555555555666665555


Q ss_pred             HHHHHHHhCC
Q 015029           92 ALEKGASLAP  101 (414)
Q Consensus        92 ~~~~a~~l~p  101 (414)
                      +|.+..+.+.
T Consensus       327 ~f~~L~~~s~  336 (468)
T PF10300_consen  327 YFLRLLKESK  336 (468)
T ss_pred             HHHHHHhccc
Confidence            5555555433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.77  E-value=0.031  Score=50.22  Aligned_cols=99  Identities=13%  Similarity=0.037  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ....+..++..+++++|+..+..++....+.   +.+-.++|.+.+.+|.+++|+..++....-+- .+...-.+|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence            4567888999999999999999999764433   45667889999999999999987765443111 2345677999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCH
Q 015029           82 KLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      ..|+-++|...|++++..++++.
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCChH
Confidence            99999999999999999985544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.76  E-value=0.0045  Score=58.99  Aligned_cols=76  Identities=21%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ..+.+....++|+.++|..+|..||.+.|+++.++...|......++.-+|-.||-+|+.++|.+.+|+.+++...
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            3456667778888888888888888888888888888888888778888888888888888888888888777643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0021  Score=59.26  Aligned_cols=75  Identities=16%  Similarity=0.341  Sum_probs=65.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        40 ~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      -.-|..++.-++|..|+.+|.+||.++|..+..|-+++.|++.+.+++.+...+.++++++|+-......++.+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            334667777889999999999999999999999999999999999999999999999999998776666666555

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.66  E-value=0.027  Score=49.13  Aligned_cols=110  Identities=15%  Similarity=0.009  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+..........++.+++..++...--+.|+.+.+-..-|..|+..|+|.+|++.++.+....|..+.+--.++.|++.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            35677888899999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|+..= ..+-..+++..+ |+......+.+.
T Consensus        91 ~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   91 LGDPSW-RRYADEVLESGA-DPDARALVRALL  120 (160)
T ss_pred             cCChHH-HHHHHHHHhcCC-ChHHHHHHHHHH
Confidence            999642 111222343443 555554444443

>PRK10941 hypothetical protein; Provisional

Probab=96.65  E-value=0.02  Score=54.64  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +.+.-..+...++|+.|+...+..|.+.|+++.-+.-||.+|.+++.+..|+.|++..++..|+.+.+..-+.++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            3445567889999999999999999999999999999999999999999999999999999999988776665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.65  E-value=0.013  Score=49.33  Aligned_cols=66  Identities=24%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+-..|.++...|+++.|+..|.+++.+.|..+.+|.++++++...|+.++|+..+.+++++....
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            445567788888999999999999999999999999999999999999999999999999997654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.64  E-value=0.0036  Score=38.92  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      ++|++|.+++.+|++++|...|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666666666666666666666666666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.62  E-value=0.0063  Score=59.26  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS----------   68 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----------   68 (414)
                      +...|+++...+.|+++++.|+.|+....++      ...+..+|..|-.+++|++|+-+..+|..+-..          
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky  204 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY  204 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence            4557889999999999999999999985443      357888999999999999999999999988542          


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      ...++|+++++|-.+|+.-+|+++++.+.++
T Consensus       205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            2457899999999999999999999998765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.054  Score=50.92  Aligned_cols=84  Identities=20%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           36 AELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        36 ~~~~~~ra~~~~kl----~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      -..+.++|.++.++    +.+.+|...|+.....-+..+.....+++|+..+|+|++|...++.++..++++++....+-
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            34566678877775    46888888888887766667888888999999999999999999999999999998877776


Q ss_pred             HHHHHHhh
Q 015029          112 EFVGLLMQ  119 (414)
Q Consensus       112 ~~~~~~~~  119 (414)
                      -+-..++.
T Consensus       249 v~a~~~Gk  256 (299)
T KOG3081|consen  249 VLALHLGK  256 (299)
T ss_pred             HHHHHhCC
Confidence            66544433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.58  E-value=0.082  Score=52.19  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=93.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y   86 (414)
                      ..+.-+...|++++|.+....+|+..-+.-  ++.+ .-..+.+++..=++.+++.+...|+++..++.+|..|+..+.|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w  344 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW  344 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence            456677889999999999999999764432  2221 2234678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           87 ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+|..+|+.++...|+.. -..+++.+...+++...+.....+
T Consensus       345 ~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         345 GKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999999999999755 456677777666666555544444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.03  Score=54.13  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      --+.+++-+.+.-|+|..||...++|+.++|.+..+++.-|.|++.++++.+|+..|+..+.++                
T Consensus       120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d----------------  183 (390)
T KOG0551|consen  120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID----------------  183 (390)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh----------------
Confidence            3467889999999999999999999999999999999999999999999999999999885544                


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                          ++|..+.+.+-.++|++.......+.+.
T Consensus       184 ----~e~K~~~~l~~l~~k~~~~~L~~er~~r  211 (390)
T KOG0551|consen  184 ----DEAKKAIELRNLIHKNDKLKLIEERDVR  211 (390)
T ss_pred             ----HHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence                3444444444346666665444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.52  E-value=0.023  Score=48.71  Aligned_cols=62  Identities=21%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      .+...+..+...|+++.|+..+.+++..+|.+-.++..+-.+|..+|++..|+..|.++...
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34556777889999999999999999999999999999999999999999999999888644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.47  E-value=0.0043  Score=37.09  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      +++++|.+++.+++++.|..+|++++.++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.46  E-value=0.0021  Score=64.69  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      +.+++.++++.++|..|+.-+.+||+.+|....+|+.||.++++++.|.+|+.+|+....+.|+.+.+...+..|-+..
T Consensus        41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999999999999999999999999999999999999988877777775543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.46  E-value=0.06  Score=51.83  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k-l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      +....+.+-+.+..+.|-..|.+|+...+-...+|...|..-+. .++.+.|...|+.++..-|.+...+......+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            44555666667779999999999996555567888888888667 46777799999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCH
Q 015029           84 EEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~  104 (414)
                      ++.+.|...|++++..-+.+.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHH
T ss_pred             CcHHHHHHHHHHHHHhcCchh
Confidence            999999999999998877766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.42  E-value=0.024  Score=57.61  Aligned_cols=104  Identities=17%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CC---C----------
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------EP---S----------   68 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-------~p---~----------   68 (414)
                      -..+.+..+...-|.+-.+||+++|+++.+|+.+|.-.  .....+|...+++|++.       +.   .          
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            34677899999999999999999999999999887531  22344555555555433       21   0          


Q ss_pred             -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 015029           69 -----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKEFV  114 (414)
Q Consensus        69 -----~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~  114 (414)
                           ...+.+|+|.|+-++|+.++|+..|+..++..|..  ..++..+-.+.
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L  305 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL  305 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence                 13466789999999999999999999999888863  33555555544

The molecular function of this protein is uncertain.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.29  E-value=0.014  Score=55.79  Aligned_cols=73  Identities=18%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      -.+.|.-..+.|+.++|...|+.|+.++|.++.++.++|+....-.+.-+|..||-+++-+.|.|..+.....
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3444555567899999999999999999999999999999999999999999999999999999987655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.28  E-value=0.049  Score=60.87  Aligned_cols=94  Identities=15%  Similarity=0.012  Sum_probs=78.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW   74 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~   74 (414)
                      ...|..++..|+++.|..++.+++...+..     ..++..+|.++...|++++|+..+.+++.+...      ...++.
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~  535 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL  535 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            346778889999999999999999865443     245678899999999999999999999987442      234677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           75 RKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .+|.+++..|+++.|...+.+++.+
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999998876

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.02  Score=53.63  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIE----IS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~----~~--P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      ...|.....-||.+.|-.+|++.-+    ++  -.+-..+.+.+.+|+..++|.+|...|.++++.|+.++.+-.+.|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            4568889999999999999984332    22  23355677778888888999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      +.-+|+..+|+..++.+++..|...
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999743

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.25  E-value=0.04  Score=57.02  Aligned_cols=93  Identities=16%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~   79 (414)
                      ++..|..+...|+.++|++.|++++.....    ...+++.+|.||+-+.+|++|..+|.+.+..+.= ..-.+|..|.|
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            567899999999999999999998853221    2578899999999999999999999999987653 34556668889


Q ss_pred             HHHcCChHHHHHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGA   97 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~   97 (414)
                      +..+|+...+...-+++.
T Consensus       350 ~~~l~~~~~~~~~~~~a~  367 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAE  367 (468)
T ss_pred             HHhhccchhhhhhHHHHH
Confidence            999999866666555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.15  Score=47.21  Aligned_cols=99  Identities=20%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------
Q 015029            5 LEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMS-------   70 (414)
Q Consensus         5 ~~~~g~~~~~~-g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-------   70 (414)
                      ++..|..+-.. .++++||.+|..|-+.....      -.+++..|..-..+++|.+|+..|+++.+-.-++.       
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            34556666666 78999999999987763222      35666667777778999999999999987655432       


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      ..+|.-|.|++...+.-.|...+++...++|.-
T Consensus       196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            245667788888899999999999999999973

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.22  E-value=0.0098  Score=36.84  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPS   68 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~   68 (414)
                      +++++|.||.++|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.15  E-value=0.076  Score=53.95  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 015029           20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGAS   98 (414)
Q Consensus        20 ~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~-y~~A~~~~~~a~~   98 (414)
                      .-+.+|..|+...+.+..+|.+......+.+.|.+--..|..++..+|+++..|..-|...|..+. ++.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            445679999999999999998887777777789999999999999999999999999999999887 9999999999999


Q ss_pred             hCCCCHHHHHHH
Q 015029           99 LAPGDSRFTNLI  110 (414)
Q Consensus        99 l~p~~~~~~~~l  110 (414)
                      .+|+++.+....
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999755543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.14  E-value=0.045  Score=51.28  Aligned_cols=71  Identities=20%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      .+.-+++-|...+..|+|.+|+..|+.+....|.   ..++.+.++.+++..++|++|+..+++.+.+.|.++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999885   4789999999999999999999999999999998775

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.09  E-value=0.11  Score=50.00  Aligned_cols=106  Identities=17%  Similarity=0.201  Sum_probs=84.3

Q ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 015029            5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~-~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~~g~~~   80 (414)
                      +...|..-+. .++...|...|+.+++..|.+..++......++++++.+.|...|++++..-+...   ..|-+....-
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE  117 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE  117 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            4556666556 67777799999999999999999999999999999999999999999998866533   5777777777


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ...|+.+......+++.++.|.+..+....
T Consensus       118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  118 SKYGDLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             HHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            888999999999999999999866555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.06  E-value=0.01  Score=35.35  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~   68 (414)
                      .++.++|.+|+.+++++.|+.++..++.++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35677888888888888888888888877764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.06  E-value=0.013  Score=37.65  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q 015029           73 YWRKATACMKLEEYETAKVALEKGA   97 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~   97 (414)
                      +.++|.+|..+|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.99  E-value=0.013  Score=37.61  Aligned_cols=29  Identities=10%  Similarity=0.195  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      +|.++|.+|.++|+|++|+.+|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999977654

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=95.97  E-value=0.034  Score=43.51  Aligned_cols=72  Identities=8%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C----CeeeecccccccccCCcceEEEe-CcEEEEE
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  287 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~  287 (414)
                      +++.+++.+.|.+.++|+.++++.|++.++.|.|+.....    +    ..|.-.+.|-..|++++.+-.+. ..-+.|.
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~   83 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE   83 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence            7899999999999999999999999999999999864321    1    13666778888999998888886 6666665


Q ss_pred             E
Q 015029          288 L  288 (414)
Q Consensus       288 L  288 (414)
                      |
T Consensus        84 l   84 (86)
T cd06475          84 A   84 (86)
T ss_pred             e
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.11  Score=50.33  Aligned_cols=110  Identities=10%  Similarity=-0.034  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSK---AYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-~p~~~~---a~~~~g~~~   80 (414)
                      +-..+..++.+|++.+|...+++.|+-.|.+..++-.--.+|+.+|+...-...+++.+-. +++.|.   .+-.++.++
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3445667888999999999999999999999888877778888999999999999999977 776644   334466678


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ..+|-|++|...-.+++++++.|.-+.....-+.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            8889999999999999999998876555544443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.93  E-value=0.067  Score=59.79  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS   70 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--------~~   70 (414)
                      +...|..+...|+++.|+..|.+++......      ..++.++|.+++..|++..|...+.+++.+...        ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            3556788899999999999999999763321      346678899999999999999999999987321        23


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      ..+..+|.+++..|++++|...+.+++.+.
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            345678999999999999999999988764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.93  E-value=0.073  Score=57.39  Aligned_cols=99  Identities=17%  Similarity=0.045  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      ..-.|..+++.|.+++|..+++..-..-+++-..+-.+-+||..++++++|..+|++++..+|. -+..+.+..+|.+.+
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~  124 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence            3457889999999999997776655567778888899999999999999999999999999998 889999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCH
Q 015029           85 EYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~  104 (414)
                      .|..=...--+..+..|.++
T Consensus       125 ~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  125 SYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHhCCccc
Confidence            99876655555556677666

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=95.91  E-value=0.041  Score=42.55  Aligned_cols=72  Identities=8%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC--CC---CeeeecccccccccCCcceEEE-eCcEEEEEEee
Q 015029          219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  290 (414)
Q Consensus       219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  290 (414)
                      +.+++.+.|.+.++|+.+++|.|++.++.|+|+....  .+   ..|.-.+.|-..|+++..+-++ ....+.|++.+
T Consensus         4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            5678899999999999999999999999999986431  11   2477778899999999988887 66788888753

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.89  E-value=0.35  Score=55.03  Aligned_cols=85  Identities=9%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHH
Q 015029           12 AFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      +.+.|++++|+++|....+.. +.+...|..+..+|.+.|++++|+..|......+  | +...|..+..+|.+.|++++
T Consensus       589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~ee  667 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDK  667 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHH
Confidence            344444444444444444432 2223334444444444444444444444444331  1 22333334444444444444


Q ss_pred             HHHHHHHHH
Q 015029           89 AKVALEKGA   97 (414)
Q Consensus        89 A~~~~~~a~   97 (414)
                      |...|..+.
T Consensus       668 A~~l~~eM~  676 (1060)
T PLN03218        668 AFEILQDAR  676 (1060)
T ss_pred             HHHHHHHHH
Confidence            444444433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.87  E-value=0.14  Score=47.16  Aligned_cols=91  Identities=19%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             HcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhCCC------CHHHH
Q 015029           14 IDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNF-------TEAVADANRAIELEPS------MSKAY   73 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~----~-P~~--~~~~~~ra~~~~kl~~~-------~~Al~~~~~Ai~l~p~------~~~a~   73 (414)
                      ....+++|++.|.-||-.    . +..  +.+++.+|.+|..+++-       ..|+..|.+|+.....      .....
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            355788999998887764    2 222  56778888888888874       4577777777766532      35688


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           74 WRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        74 ~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      |.+|.++.++|++++|..+|.+++.......
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999987654443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.13  Score=48.38  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-HH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL   93 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~-~~   93 (414)
                      .+.+.+|.-+|.+.-+..|..+..+...|.|++.+++|++|...++.|+..++..+..+.++-++-..+|.-.++.. .+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            45688999999998877788899999999999999999999999999999999999999999999999999877765 55


Q ss_pred             HHHHHhCCCCHHHHH
Q 015029           94 EKGASLAPGDSRFTN  108 (414)
Q Consensus        94 ~~a~~l~p~~~~~~~  108 (414)
                      .+....+|.++-+..
T Consensus       266 ~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  266 SQLKLSHPEHPFVKH  280 (299)
T ss_pred             HHHHhcCCcchHHHH
Confidence            666677887774443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.74  E-value=0.063  Score=58.44  Aligned_cols=122  Identities=16%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +...-..+.+.|.+++|..+|....+..+  .+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|..
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~  506 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI  506 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence            45556778889999999999998876422  23456788888999999999999887653 2233 45678888888999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      .|+++.|...+++.++++|.+......+..+....+.-..+.....
T Consensus       507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999999999999877666666666544444444444333

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=95.72  E-value=0.04  Score=42.68  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC--------CeeeecccccccccCCcceEEEeC-cEEEEEEee
Q 015029          223 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK  290 (414)
Q Consensus       223 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K  290 (414)
                      +.+.|.+.++|+.+++|.|.+.++.|.|+......        ..|.-.+.|-..|+++..+-++.. .-+.|.+.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            57899999999999999999999999998643211        247778889999999988888887 788888765

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.71  E-value=0.49  Score=53.86  Aligned_cols=90  Identities=11%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCh
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEY   86 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-~~~~a~~~~g~~~~~lg~y   86 (414)
                      ...+.+.|++++|+++|...++.. +-+...|..+..+|.+.|++++|+..|+.....+. .+...|..+..+|.+.|++
T Consensus       656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~  735 (1060)
T PLN03218        656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL  735 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            344555666666666666655542 23345566666666666666666666666554321 1445566666666667777


Q ss_pred             HHHHHHHHHHHH
Q 015029           87 ETAKVALEKGAS   98 (414)
Q Consensus        87 ~~A~~~~~~a~~   98 (414)
                      ++|.+.|.....
T Consensus       736 eeAlelf~eM~~  747 (1060)
T PLN03218        736 PKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHHHHH
Confidence            777766666543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.70  E-value=0.097  Score=39.93  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~---~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      +....++|..+|...+.++|+..+.++|+..++...   ++-.+..+|...|+|.+++.++-.=+.+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999998877754   4455667788889999998887766655

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.69  E-value=0.34  Score=43.47  Aligned_cols=93  Identities=18%  Similarity=0.075  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      -+...++..|.-+++..|...++...+.+|.  .+.-....|.+|--+|.+.+|...|+.++...| .+.+..+.+..+.
T Consensus       126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La  204 (251)
T COG4700         126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLA  204 (251)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            4567889999999999999999999888775  356667778889999999999999999999988 5678889999999


Q ss_pred             HcCChHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGA   97 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~   97 (414)
                      .+|+.++|...+....
T Consensus       205 ~qgr~~ea~aq~~~v~  220 (251)
T COG4700         205 KQGRLREANAQYVAVV  220 (251)
T ss_pred             HhcchhHHHHHHHHHH
Confidence            9999988887665443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.69  E-value=0.12  Score=44.40  Aligned_cols=84  Identities=15%  Similarity=-0.073  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...........+..++..++...--+.|+.+.+-..-|..|+..|+|.+|++.++.+.+-.+..+.+--.++.|++.+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            45566677777999999999998888889999999999999999999999999999999999888899999999999999


Q ss_pred             CChH
Q 015029           84 EEYE   87 (414)
Q Consensus        84 g~y~   87 (414)
                      |+..
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            9853

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=95.67  E-value=0.051  Score=42.51  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC----CeeeecccccccccCCcceEEE-eCcEEEEEEe
Q 015029          219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA  289 (414)
Q Consensus       219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~  289 (414)
                      +.+++.+.|.+.++|+.+++|.|++.++.|.|+....    ++    .+|.-.+.|-..|+++..+-++ ...-+.|+|-
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            5678899999999999999999999999999986421    11    1255677899999999988888 5778888886


Q ss_pred             e
Q 015029          290 K  290 (414)
Q Consensus       290 K  290 (414)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.65  E-value=0.17  Score=51.22  Aligned_cols=101  Identities=15%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|.--..++++..|-..|.+||..+..+..+++..+.+-++.+....|...+++|+.+-|.--..||..-..--.+|
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            34455556678899999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHH
Q 015029           85 EYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      +..-|.+.|++=+...|+...
T Consensus       156 Ni~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             ccHHHHHHHHHHHcCCCcHHH
Confidence            999999999999999987543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.59  E-value=0.02  Score=57.88  Aligned_cols=77  Identities=13%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEI---------SP---------NSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~---------~P---------~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p   67 (414)
                      .+.|.++|..|.|..++-+|.+||+-         .|         ..-++++|.|..|+..|+.-.|.+||.+++..-.
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            45688899999999999999999961         11         1257899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 015029           68 SMSKAYWRKATACMK   82 (414)
Q Consensus        68 ~~~~a~~~~g~~~~~   82 (414)
                      .++..|+|+|.||..
T Consensus       367 ~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIM  381 (696)
T ss_pred             cCcHHHHHHHHHHHH
Confidence            999999999999874

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=0.62  Score=43.52  Aligned_cols=116  Identities=22%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMS   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-----p~~~   70 (414)
                      |..+...++.+-..++|++|...+.+|++-..+|      +.+|-..+.....+..+.++...|++|+.+-     |+-.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            3455666777777889999999999998654444      4556666777777889999999999999884     3333


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKEFVGLL  117 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~~  117 (414)
                      -.-+.++-=....-+.++|+..|++++.+-..+   ......+++|-..+
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l  160 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL  160 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence            333334444556677899999999988765443   33444455555444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.43  E-value=0.23  Score=44.44  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----HHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--M----SKAY   73 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~----~~a~   73 (414)
                      ..+...|+.+++.|+++.|++.|.++....-..   ...++++-.+.+..+++..+.....+|-.+-..  +    .+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            346678888999999999999998877764332   456666666777778888888888888766432  1    2344


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHH
Q 015029           74 WRKATACMKLEEYETAKVALEKGA   97 (414)
Q Consensus        74 ~~~g~~~~~lg~y~~A~~~~~~a~   97 (414)
                      ...|.++...++|..|...|-.+.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            556777888888988888887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=95.40  E-value=0.08  Score=41.23  Aligned_cols=71  Identities=8%  Similarity=0.110  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---CC-----eeeecccccccccCCcceEEEe-CcEEEEEEeeC
Q 015029          221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAKA  291 (414)
Q Consensus       221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K~  291 (414)
                      +++.+.|.+.++|+.+++|.|++.++.|+|+.....   +.     .|.-.+.|-..|+++..+-+.. ..-+.|+|-|+
T Consensus         5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498           5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence            567899999999999999999999999999874321   11     2666678989999999988885 77888988764

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.37  E-value=0.21  Score=39.44  Aligned_cols=45  Identities=22%  Similarity=0.158  Sum_probs=22.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           57 ADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        57 ~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ..++.++..+|++..+.|.+|.++...|+|++|++.|-.+++.++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            344455555555555555555555555555555555555555444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.35  E-value=0.17  Score=39.90  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (414)
Q Consensus        21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~   69 (414)
                      .+..+.+++..+|++..+.+.+|.+++..|++++|+..+-.++..++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4667889999999999999999999999999999999999999998865

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.15  Score=48.23  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ....++=.+|+..++++.|+.+.++.+.++|.++..+.-+|.+|.++|.+.-|+..++..++..|+++.+........
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            455566677888899999999999999999999999999999999999999999999999999999987665544433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.38  Score=45.37  Aligned_cols=109  Identities=11%  Similarity=0.082  Sum_probs=90.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIEL----EP--SMSKAYWRKAT   78 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l----~p--~~~~a~~~~g~   78 (414)
                      +...+++.-.|.|.-.+..|.+.+..+ |..+.+...+|..-++.|+.+.|...|+++-..    +.  .....+.+.+.
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            445677888999999999999999987 678899999999999999999999999955433    32  24557777888


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++...++|..|...|.+++..|+.++.+....+-|.
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl  296 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL  296 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence            888899999999999999999999887665555555

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.04  E-value=0.34  Score=52.74  Aligned_cols=97  Identities=10%  Similarity=-0.059  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~   80 (414)
                      +......+.+.|++++|+.+|.+.+..  .|+ ...|..+-.++.+.|.+++|...|+...+...-  +...|.-+..+|
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            345567788999999999999998875  455 556777888889999999999999999865332  445788899999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCC
Q 015029           81 MKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+.|++++|.+.+++. ...|+.
T Consensus       473 ~r~G~~~eA~~~~~~~-~~~p~~  494 (697)
T PLN03081        473 GREGLLDEAYAMIRRA-PFKPTV  494 (697)
T ss_pred             HhcCCHHHHHHHHHHC-CCCCCH
Confidence            9999999999998764 344543

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=95.02  E-value=0.11  Score=40.33  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeecccccccccCCcceEEEe-CcEEEEEEee
Q 015029          220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  290 (414)
Q Consensus       220 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  290 (414)
                      .+++.+.|.+.++|+.+++|.|++.++.|.|+....   .+     ..|.-.+.|-..|+++..+-++. ..-+.|.+-|
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478           4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            467789999999999999999999999999886432   11     12666778888999998887774 6677887754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>PLN03077 Protein ECB2; Provisional

Probab=94.93  E-value=0.29  Score=54.56  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=89.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~---~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      .-..+.+.|++++|+.+|....+.   .| +...|..+..+|.+.|++++|...++.. .+.|+ ...|-.+-.+|..-|
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~  671 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR  671 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC
Confidence            345678899999999999998743   34 3568888999999999999999998875 35554 556666666788889


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhh
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLC  125 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  125 (414)
                      +.+.|....+++++++|++......+..++...+.-..+..
T Consensus       672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            99999999999999999999888888877755544333333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.87  E-value=0.04  Score=50.71  Aligned_cols=59  Identities=27%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~   69 (414)
                      .+...++++.|.++|.+||.+.|....-|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45566777777777777777777777777777777777777777777777777777753

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=94.81  E-value=0.18  Score=39.62  Aligned_cols=72  Identities=13%  Similarity=0.157  Sum_probs=53.8

Q ss_pred             cccccCC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeecccccccccCCcceEEEe
Q 015029          216 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL  280 (414)
Q Consensus       216 ~dW~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~  280 (414)
                      +|=++++ +.+.|.+.++|+.+++|.|.+.++.|.|+.....              -..|.-.+.|-..|+..  +....
T Consensus         3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~   80 (90)
T cd06470           3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE   80 (90)
T ss_pred             eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence            3446764 8999999999999999999999999998853211              12366677787788775  56667


Q ss_pred             CcEEEEEEe
Q 015029          281 STKVEIRLA  289 (414)
Q Consensus       281 ~~kiei~L~  289 (414)
                      ..-+.|+|.
T Consensus        81 ~GvL~I~l~   89 (90)
T cd06470          81 NGLLTIDLE   89 (90)
T ss_pred             CCEEEEEEE
Confidence            777777775

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.72  E-value=0.055  Score=49.81  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=56.6

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        45 ~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      ...+.++.+.|...+++|+.+.|.....|||+|......|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456689999999999999999999999999999999999999999999999999998764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.51  E-value=0.26  Score=45.94  Aligned_cols=91  Identities=22%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWR   75 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~------p~~~~a~~~   75 (414)
                      ++-.+...-+.++|+++|++++..--.+      .+++...+..|.++..|.+|-..+.+-..+.      +...+++.-
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va  195 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA  195 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence            3334444555555555555555432111      3444555555555555555544443333221      122233333


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      .-++|....+|..|..+|+.+.+
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhc
Confidence            33444444556666655555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.49  E-value=0.69  Score=52.53  Aligned_cols=107  Identities=12%  Similarity=0.016  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEE   85 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~~lg~   85 (414)
                      ....|-+.+.+++|.++|+.-++..-+....|...|..+++..+-+.|...+.+|+..-|.  +.+..-..|+.-|..|+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            4456667788888888888888877777788888888888888888888888888888886  77777888888888888


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      -+.+...|+-.+.-.|.-..++..+-+..
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence            88888888888888887776666655544

>PLN03077 Protein ECB2; Provisional

Probab=94.41  E-value=0.89  Score=50.75  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~--~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--~~~~a~~~~g~~~   80 (414)
                      +......+...|+.++|+.+|++.++.  .|+.. .|..+-.++.+.|++++|+..|+......+  -+...|.-+..+|
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            455667889999999999999998874  56654 455555678899999999999999985432  2557888899999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      .+.|++++|...++.. .+.|+.......+.
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~  665 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPDPAVWGALLN  665 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence            9999999999999875 35665443333333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.33  E-value=0.26  Score=39.08  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029           10 KEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEP   67 (414)
Q Consensus        10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~---------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p   67 (414)
                      ......|+|..|++.+.+.++.....         ..++.++|.++...|++++|+..++.|+++..
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            44566777777766666655542211         24455566666666666666666666666543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.31  E-value=0.041  Score=53.36  Aligned_cols=66  Identities=29%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~   68 (414)
                      .-+..+|.++++.+....||..|+.||.++|+...-|-.|+.++..+|++.+|..|+..|+.++-+
T Consensus       149 ~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  149 ILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            345678899999999999999999999999999999999999999999999999999999998753

>PRK10743 heat shock protein IbpA; Provisional

Probab=94.30  E-value=0.27  Score=41.98  Aligned_cols=75  Identities=9%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             ccccc-cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEe
Q 015029          215 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVL  280 (414)
Q Consensus       215 r~dW~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~  280 (414)
                      .+|-+ .+++.+.|.+.++|+.+++|.|.+.++.|+|+....    ++         ..|.-.+.|-..|+++.  -+..
T Consensus        36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~  113 (137)
T PRK10743         36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV  113 (137)
T ss_pred             cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence            46888 489999999999999999999999999999986421    11         13555778889999984  5667


Q ss_pred             CcEEEEEEeeC
Q 015029          281 STKVEIRLAKA  291 (414)
Q Consensus       281 ~~kiei~L~K~  291 (414)
                      ..-+.|+|-|.
T Consensus       114 dGVL~I~lPK~  124 (137)
T PRK10743        114 NGLLYIDLERV  124 (137)
T ss_pred             CCEEEEEEeCC
Confidence            77899999985

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=2  Score=40.03  Aligned_cols=97  Identities=24%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------KA   72 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~------~a   72 (414)
                      +.+.|+.+-..++|..|=..|.+|-...      .+.+..|..-+.||-+ .+..+|+.+++++|++--+..      +.
T Consensus        37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~  115 (288)
T KOG1586|consen   37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH  115 (288)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence            4455556666677777777776665541      1235667777777744 489999999999999865533      34


Q ss_pred             HHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q 015029           73 YWRKATACMK-LEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        73 ~~~~g~~~~~-lg~y~~A~~~~~~a~~l~p~  102 (414)
                      ++-+|.+|.. +.+++.|+.+|+++-+.-..
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            5567888766 48999999999998766543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.17  E-value=0.53  Score=48.15  Aligned_cols=58  Identities=19%  Similarity=0.114  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           39 FADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      ...+|+|..++|+.++|++.+...++..|.  +...++++-.+|..+++|.++...+.+.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            344566666677777777777776666553  4456666777777777776666666654

The molecular function of this protein is uncertain.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.03  E-value=0.13  Score=33.36  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      .++.++|.+|..+|+|++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34556666666666666666666666654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.99  E-value=0.32  Score=47.33  Aligned_cols=87  Identities=14%  Similarity=0.005  Sum_probs=66.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEI-SPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~-~P~~~---~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      -.++|..|+...-...+.++|-. +++-+   -..--+|.+++..|-|.+|...+++|+++++.+.-+...++.++...|
T Consensus       144 h~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~  223 (491)
T KOG2610|consen  144 HDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNG  223 (491)
T ss_pred             hhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence            35677788888888888887776 55543   222335667777888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHH
Q 015029           85 EYETAKVALEK   95 (414)
Q Consensus        85 ~y~~A~~~~~~   95 (414)
                      ++.++.+++.+
T Consensus       224 r~Keg~eFM~~  234 (491)
T KOG2610|consen  224 RHKEGKEFMYK  234 (491)
T ss_pred             hhhhHHHHHHh
Confidence            88888887765

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.96  E-value=1.2  Score=45.09  Aligned_cols=92  Identities=18%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHH--------------------------------------------
Q 015029            4 DLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAEL--------------------------------------------   38 (414)
Q Consensus         4 ~~~~~g~~~~~~g~-y~~Ai~~y~~AL~~~P~~~~~--------------------------------------------   38 (414)
                      -+..-|..+.+.|. -++|+.++..+++..+.+..+                                            
T Consensus       381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~  460 (549)
T PF07079_consen  381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE  460 (549)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence            34556677777777 667888888888777766110                                            


Q ss_pred             ----HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           39 ----FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        39 ----~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                          +..=|.-++..|+|.++.-...=..+++| .+.+|..+|.|++...+|.+|-.+|...
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence                11112333456788888888888888899 8999999999999999999999888653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=0.28  Score=46.51  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      .=..+...++++.|+..-.+.|.++|.++.-..-||.+|.++|.+.-|+.|++..++.-|+.+.+-+-++...
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3456778899999999999999999999999999999999999999999999999999999887766655543

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=93.83  E-value=0.32  Score=37.72  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeecccccccccCCcceEEEe-CcEEEEEEee
Q 015029          221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  290 (414)
Q Consensus       221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  290 (414)
                      .++...|.+.++|+.+++|.|++.++.|.|+....   .+.     .|.-.+.|-..|+++..+-+.. ...+.|.|-|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            35678899999999999999999999999986431   111     2555677888999998888885 6777877753

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.65  E-value=2.8  Score=41.88  Aligned_cols=82  Identities=16%  Similarity=0.063  Sum_probs=68.0

Q ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CC---------------CCHHHHHHHHHH
Q 015029           29 IEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EP---------------SMSKAYWRKATA   79 (414)
Q Consensus        29 L~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------------~p---------------~~~~a~~~~g~~   79 (414)
                      |+.+|-....++.++.++..+|++..|....++|+-.              +.               ....+.|+....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            4668989999999999999999999999888888622              11               124588999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCC-CHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPG-DSRFTNLI  110 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l  110 (414)
                      +.+.|.+..|.++++-.+.+||. |+-.....
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~  144 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF  144 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence            99999999999999999999999 77544333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.49  E-value=0.83  Score=38.73  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         5 ~~~~g~~~~~~g~---y~~Ai~~y~~AL~-~~P~~-~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      .++.+-++....+   ..+.|.+++..+. -.|.. -++++.+|..|+++++|+.|+++++..++..|++..|.-..-.
T Consensus        35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4455555555444   4678889999886 44443 5788999999999999999999999999999999877544433

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=2.4  Score=40.04  Aligned_cols=102  Identities=11%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHH
Q 015029           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAK   90 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~-~A~   90 (414)
                      ++...-..|+.+-..+|.++|-+-..+..|=.++..++ ++.+-+..+...+.-+|.+...|..+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34566788999999999999999888888888887764 6788899999999999999999999999999999887 778


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           91 VALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++++.++..+..|-.+.....-|-
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~  157 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVL  157 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHH
Confidence            888889988888777666666555

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=93.27  E-value=0.36  Score=37.81  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----C-C------CeeeecccccccccCCcceEEE-eCcEEEEE
Q 015029          221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  287 (414)
Q Consensus       221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~  287 (414)
                      ..+.+.|.+.++|+.+++|.|++.++.|.|+....     . +      ..|.-.+.|-..|+++..+-.+ ...-+.|.
T Consensus         5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~   84 (87)
T cd06481           5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR   84 (87)
T ss_pred             ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence            35678999999999999999999999999986421     1 1      2355677888889988877777 44455554


Q ss_pred             E
Q 015029          288 L  288 (414)
Q Consensus       288 L  288 (414)
                      +
T Consensus        85 ~   85 (87)
T cd06481          85 A   85 (87)
T ss_pred             c
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.26  E-value=1.4  Score=44.89  Aligned_cols=106  Identities=20%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029           13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      ....|.+.+-+.|..+|++-|+.    +.+++..|+..++..++..|...+-.||-+.|.+ +.+-..-.+-.++++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence            45678888999999999998875    6677778888888899999999999999888854 222223334567888999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           89 AKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +...|++.++..|.|-......+.++..++.
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd  486 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGD  486 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence            9999999999999887776667777754443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.21  E-value=0.53  Score=46.28  Aligned_cols=94  Identities=16%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----S------AELFADRAQASIKLQNFTEAVADANRAIELEP------SM   69 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------~~   69 (414)
                      ...|..+-..+||++|+-+..+|+++..+    +      ..+++.++.+|.++|++-.|..+++.|..+.-      ..
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            45677888899999999999999887322    1      45677889999999999999999999988742      24


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .....-+|.+|-..|+.+.|..-|+.+...
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            566777899999999999999999887764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.95  E-value=0.25  Score=32.01  Aligned_cols=29  Identities=28%  Similarity=0.202  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .++..+|.+|..+|+|++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            57889999999999999999999998764

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=92.93  E-value=0.54  Score=40.39  Aligned_cols=74  Identities=9%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             ccccc-CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeecccccccccCCcceEEEeC
Q 015029          216 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS  281 (414)
Q Consensus       216 ~dW~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~  281 (414)
                      +|=++ +++.+.|++.++|+++++|.|.+.++.|+|+....    ++         ..|.-.+.|-..|+++  +-+...
T Consensus        35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n  112 (142)
T PRK11597         35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN  112 (142)
T ss_pred             EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence            56676 46789999999999999999999999999986421    11         1266667788889887  466777


Q ss_pred             cEEEEEEeeC
Q 015029          282 TKVEIRLAKA  291 (414)
Q Consensus       282 ~kiei~L~K~  291 (414)
                      .-+.|+|-|.
T Consensus       113 GVL~I~lPK~  122 (142)
T PRK11597        113 GLLHIDLIRN  122 (142)
T ss_pred             CEEEEEEecc
Confidence            7899999986

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.93  E-value=2.7  Score=41.99  Aligned_cols=63  Identities=14%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             HHHHHHHHH---cCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 015029            6 EKKAKEAFI---DDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS   68 (414)
Q Consensus         6 ~~~g~~~~~---~g~y~~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl---------~~~~~Al~~~~~Ai~l~p~   68 (414)
                      ...|.++-+   .|+.++|+..+..+|. ..+.+++.|.-.|.+|-.+         ..+++|+..|.++++++|+
T Consensus       183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            356677777   8999999999999555 5677889999999998654         3578899999999999874

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.86  E-value=1.5  Score=42.97  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCHH
Q 015029           71 KAYWRKATACMKL------EEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        71 ~a~~~~g~~~~~l------g~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      ++++.+|.....+      +.++++...|..+..++|....
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k  293 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK  293 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence            4555555555555      5555555555555555554443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.80  E-value=0.62  Score=51.95  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=82.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl----~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      .++++..+.|+.|+..|.+.-...|.-   -++.+..|.+++..    +   .+.+|+.-|++.- -.|.-+.-|+-.|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            467788899999999999998888876   46777788887754    2   5777777776543 35667888999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      +|.++|+|++-+.+|..|++.-|.++.+.....
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            999999999999999999999999887655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.73  E-value=1.8  Score=41.50  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      ..++..++..+...++++.++..+++.+.++|.+-.+|.++-.+|+..|+...|+..|.+...+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            5677888889999999999999999999999999999999999999999999999999987764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.70  E-value=4.3  Score=38.85  Aligned_cols=113  Identities=12%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CCC----------HHHHHHHHHHHHHccCHHHH---HHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEIS----PNS----------AELFADRAQASIKLQNFTEA---VADANRAI   63 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~----P~~----------~~~~~~ra~~~~kl~~~~~A---l~~~~~Ai   63 (414)
                      |+.+++.|..++..+ +|+.|+..+++|+++-    ...          ...+..++.+|+..+.++..   +...+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            567899999999999 9999999999999872    111          45778889999988876644   33444444


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 015029           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP-GDSRFTNLIKEFV  114 (414)
Q Consensus        64 ~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p-~~~~~~~~l~~~~  114 (414)
                      .-.|+.+..++..-.++...++.+.+.+.+.+.+.--. .+..+...+.-+.
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~  166 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK  166 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            44577677775555555558899999998888876544 4444554444444

It is also involved in sporulation [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.48  E-value=0.28  Score=47.19  Aligned_cols=90  Identities=12%  Similarity=0.090  Sum_probs=76.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        25 y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~-~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      |.++-...|+++.+|...++--.+.+.|.+--..|..++.++|.+.+.|.. .+.-++..+++..|...|.++++++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555568889999988888888999999999999999999999999988 5566888999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 015029          104 SRFTNLIKEFV  114 (414)
Q Consensus       104 ~~~~~~l~~~~  114 (414)
                      +.++...-+.+
T Consensus       176 p~iw~eyfr~E  186 (435)
T COG5191         176 PRIWIEYFRME  186 (435)
T ss_pred             chHHHHHHHHH
Confidence            97665554444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.40  E-value=3.1  Score=40.64  Aligned_cols=63  Identities=21%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIE   64 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~----~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~   64 (414)
                      +..+...+..+-+.|.++.|...+.++....+.    .+.+.+..+..+...|+-.+|+..+...+.
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677788888889999888888887775421    466777888888888888888888888887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=92.39  E-value=0.59  Score=36.60  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             CCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC------CCC-----eeeecccccccccCCcceEEEeCc-EEEE
Q 015029          221 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEE-----AYHFQPRLFGKIIPAKCRYEVLST-KVEI  286 (414)
Q Consensus       221 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~-----~y~~~~~L~~~I~p~~s~~~v~~~-kiei  286 (414)
                      .++.++|++.++|+.+++|.|++.++.|+|+....      +..     .|.-.+.|-..|+++..+-+.... .+.|
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i   83 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI   83 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence            35789999999999999999999999999987432      111     244566788888888877777666 4444

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.09  E-value=4.2  Score=46.62  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      -|...|..++++.+-+.|-.++.+||+.-|.  .......-|+.-++.|+-+.+...|+-.+.-.|.....|.-+...-.
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence            3567888999999999999999999999998  67888999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ..|+.+.+...|++++.+.-.-..+...+
T Consensus      1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred             ccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence            99999999999999998876544443333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.07  E-value=4.5  Score=38.66  Aligned_cols=95  Identities=16%  Similarity=-0.040  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHHH
Q 015029            5 LEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSKA   72 (414)
Q Consensus         5 ~~~~g~~~~~----~g~y~~Ai~~y~~AL~~~P~~-~~~~~~ra~~~~kl~-------~~~~Al~~~~~Ai~l~p~~~~a   72 (414)
                      ....|..++.    ..|+.+|+.+|.+|.+..-.. ..+.+.++.+|..-.       +...|+..|.+|....  ++.+
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a  189 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDA  189 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence            3444555544    346777777777777664222 233566666665531       2235666666666655  6667


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 015029           73 YWRKATACMK----LEEYETAKVALEKGASLAP  101 (414)
Q Consensus        73 ~~~~g~~~~~----lg~y~~A~~~~~~a~~l~p  101 (414)
                      .+++|.+|..    ..++..|..+|.++-....
T Consensus       190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            7777766644    2356777777777766655

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.04  E-value=1.3  Score=46.07  Aligned_cols=101  Identities=19%  Similarity=0.048  Sum_probs=79.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCHHHHHHH------HHHHHH
Q 015029           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK------ATACMK   82 (414)
Q Consensus        10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~-~~Ai~l~p~~~~a~~~~------g~~~~~   82 (414)
                      ..+...++...|+.....++..+|.+..++.+++.+....|....++..+ ..+....|.+......+      |..+..
T Consensus        75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (620)
T COG3914          75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL  154 (620)
T ss_pred             hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence            33444566777888888899999999999999999998887766655544 44888888877766665      888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      +|+..++...++++..+.|.++.+...+
T Consensus       155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         155 LGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             hccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            8888999999999999999887654443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.81  E-value=4.1  Score=43.19  Aligned_cols=91  Identities=16%  Similarity=0.028  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            6 EKKAKEAFIDD-----YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         6 ~~~g~~~~~~g-----~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      ...|.+++...     ++..|+.+|.++-+..  ++.+.+.+|.+|....   ++..|..+|..|...  .+..|++++|
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la  367 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLA  367 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHH
Confidence            34677777743     7899999999999875  4567888889988765   678999999998864  4788999999


Q ss_pred             HHHHHc----CChHHHHHHHHHHHHhC
Q 015029           78 TACMKL----EEYETAKVALEKGASLA  100 (414)
Q Consensus        78 ~~~~~l----g~y~~A~~~~~~a~~l~  100 (414)
                      +||..=    .+...|..+|.++-..+
T Consensus       368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  368 LCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            998753    36789999999998888

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.68  E-value=2.3  Score=45.03  Aligned_cols=104  Identities=12%  Similarity=-0.049  Sum_probs=79.3

Q ss_pred             HHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCC
Q 015029            5 LEKKAKEAFI-----DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQ-----NFTEAVADANRAIELEP   67 (414)
Q Consensus         5 ~~~~g~~~~~-----~g~y~~Ai~~y~~AL~-------~~P~~~~~~~~ra~~~~kl~-----~~~~Al~~~~~Ai~l~p   67 (414)
                      ....|.+++.     .+|.+.|+.+|..+..       ..  .+.+.+.+|.+|++..     ++..|+..+.+|-.++ 
T Consensus       247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-  323 (552)
T KOG1550|consen  247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-  323 (552)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence            3445555554     4789999999999877       32  4557888999999853     7888999999998765 


Q ss_pred             CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           68 SMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        68 ~~~~a~~~~g~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                       ++.+.|++|.++..-.   ++..|..+|..|-....  ..+..++..|.
T Consensus       324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y  370 (552)
T KOG1550|consen  324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCY  370 (552)
T ss_pred             -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence             6779999999998866   67899999998876554  44566666666

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=91.45  E-value=0.9  Score=44.51  Aligned_cols=65  Identities=25%  Similarity=0.354  Sum_probs=53.7

Q ss_pred             CCCeEEEEEEeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeC--cEEEEEE
Q 015029          221 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL  288 (414)
Q Consensus       221 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L  288 (414)
                      ....+.|.|.++++ +..++.+++.++.|.|.+...   .|.|.|.|-.+|+++.++-+...  ..+.|+|
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl  326 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL  326 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence            36789999999998 668999999999999987532   59999999999999998766554  3677776

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=1.9  Score=45.40  Aligned_cols=76  Identities=13%  Similarity=0.144  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      .++.+-|.-+++.++|..+++.|...+.--|.      +.+.+..++.||..+.+.+.|.+.++.|-+.+|.+.-.+..+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            46677888999999999999999999977553      567888899999999999999999999999999988655444


Q ss_pred             HH
Q 015029          111 KE  112 (414)
Q Consensus       111 ~~  112 (414)
                      -.
T Consensus       435 ~~  436 (872)
T KOG4814|consen  435 LQ  436 (872)
T ss_pred             HH
Confidence            33

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.06  E-value=0.39  Score=31.34  Aligned_cols=28  Identities=25%  Similarity=0.504  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      +|..+|.+-+..++|.+|+.||.+|+.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=90.97  E-value=9.9  Score=37.27  Aligned_cols=88  Identities=13%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029           23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        23 ~~y~~AL~~~P~~~~~~~~ra~~~~kl~~------------~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      ..|++.+..+|+|..+++.+....-.+-.            .+..+..+++|++.+|++...+..+-.++..+.+-+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788888999998888887766555432            456688899999999988888888888888888888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q 015029           91 VALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l  110 (414)
                      .-+++++..+|.+..+...+
T Consensus        86 ~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHH
Confidence            88999999999877554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.88  E-value=5.6  Score=39.78  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE-AVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~-Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      .-.+..+|.+|+..++-.++..+.+..|+-..+.   ...+.+.|+-.. =++-+.+...+.|++.+..+.++.+-+.-|
T Consensus       267 v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~---lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~  343 (531)
T COG3898         267 VVAARALFRDGNLRKGSKILETAWKAEPHPDIAL---LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG  343 (531)
T ss_pred             HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH---HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence            3456778888888888888888888877643221   122333343221 223344455667889999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhhhhhhhhHHHHHhhhc
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL-MQNAVYLCWNYELLRRVG  135 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  135 (414)
                      +|..|...-+.+....|... +...+.++.... +..++...|..+..+...
T Consensus       344 e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~APr  394 (531)
T COG3898         344 EFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKAPR  394 (531)
T ss_pred             chHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence            99999999999999999765 555666666555 667777788877655443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.82  E-value=6  Score=39.54  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           11 EAFIDDYFELAYDLYSQAIEI---SPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~---~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      .....|+|+.||++.+.....   .++-     +.++...+...+. -+...|..++..++.|.|+...+-.--+.+||+
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence            456678888888888765543   3322     2233333333322 357889999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      .|+..++-..++.+.+.+|. +.+...
T Consensus       276 d~~~rKg~~ilE~aWK~ePH-P~ia~l  301 (531)
T COG3898         276 DGNLRKGSKILETAWKAEPH-PDIALL  301 (531)
T ss_pred             ccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence            99999999999999999884 444333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.77  E-value=1.7  Score=34.33  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=46.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           45 ASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        45 ~~~kl~~~~~Al~~~~~Ai~l~p~---------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ..++.++|..|+..+.+.+.....         ...+.+.+|.++...|++++|+..++.++.+..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345789999998888888766431         246788899999999999999999999987754

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.56  E-value=1  Score=38.71  Aligned_cols=51  Identities=24%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y   86 (414)
                      ....+.++..++..|+|.-|+..++.++..+|++..+...++.+|..+|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            345555666666666666666666666666666666666666666665543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.46  E-value=1.5  Score=44.47  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR   61 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~   61 (414)
                      ....|.-+|..|+|.+++-+-.-..+.+| ++.+|..+|.|++..++|.+|..++..
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            45567889999999999998888888999 899999999999999999999988744

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.44  E-value=1  Score=46.94  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      +.+.++.+.+.|-...|-.++.++|.++...+..++.+|.+|+.+++...|++.|..|+.++|.++...--+-
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            4678899999999999999999999999888899999999999999999999999999999999877654433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.39  E-value=2.2  Score=46.30  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCCHH----------HHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNSAE----------LFADRAQASIKLQNFTEAVADANRAI   63 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~A----------L~~~P~~~~----------~~~~ra~~~~kl~~~~~Al~~~~~Ai   63 (414)
                      .+++.+..+-..+|...|+++|.++          |..+|....          +|.--|+.+...|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4677888888899999999999874          444555433          44444667777899999999888775


Q ss_pred             Hh---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        64 ~l---------------------~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      .-                     ...+..|.|.+|+.|...|++.+|+.+|.++..
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            22                     123667899999999999999999998887644

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.05  E-value=5.1  Score=35.06  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      ...++.+..+-+..++.+++...+.-.--+.|..+..-+.-|..+...|+|.+|...|+....-.|..+.....+.-|..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            35677777777888999999999998889999999999999999999999999999999998888989988888888883

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=90.02  E-value=2  Score=33.26  Aligned_cols=67  Identities=7%  Similarity=-0.009  Sum_probs=48.3

Q ss_pred             cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeecccccccccCCcceEEEe-CcEEEE
Q 015029          220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEI  286 (414)
Q Consensus       220 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei  286 (414)
                      .+++...|.+.++|+.+++|.|++.++.|+|+....   .+.     .|.-++.|-..|+++..+-+.. ..-+.|
T Consensus         4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I   79 (83)
T cd06477           4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVV   79 (83)
T ss_pred             cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEE
Confidence            356789999999999999999999999999986431   111     2444556878888887666653 444444

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.73  E-value=5.8  Score=35.91  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           22 YDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        22 i~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                      +....+.+..++.+   ..+.+.+|..+...+++++|+..++.++..-.+   -..+-+|+|.+++.+|.+++|+..+..
T Consensus        72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            33333434444343   234566788888899999999999998865443   255789999999999999999988875


Q ss_pred             H
Q 015029           96 G   96 (414)
Q Consensus        96 a   96 (414)
                      .
T Consensus       152 ~  152 (207)
T COG2976         152 I  152 (207)
T ss_pred             c
Confidence            3

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.50  E-value=1.2  Score=28.61  Aligned_cols=30  Identities=13%  Similarity=0.016  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHH--HHHHHHhCC
Q 015029           72 AYWRKATACMKLEEYETAKVA--LEKGASLAP  101 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~--~~~a~~l~p  101 (414)
                      .++-+|-.++..|+|++|...  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344455555555555555555  224444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.33  E-value=1.6  Score=33.09  Aligned_cols=31  Identities=32%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      +|..+..+|..+-..|+|.+||.+|+.|++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3566777888888888888888887777654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.30  E-value=0.63  Score=30.40  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .+|.++|.+-...++|..|...|++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            47899999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.30  E-value=1.2  Score=42.26  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus        21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      |..+|.+|+.+.|++...|.++|..+...++.-.|+-.|-+++....-.+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888888888888888888888888888888888888888886654567777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.83  E-value=4.9  Score=41.14  Aligned_cols=97  Identities=13%  Similarity=0.051  Sum_probs=72.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      -......|+...|-+....+|...|.++.....++.++..+|.|+.|+++..-+-.+-..-..+.--+-..++.+|+++.
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            34567789999999999999999999999999999999999999999988766654433333444445556778888888


Q ss_pred             HHHHHHHHHHhCCCCHH
Q 015029           89 AKVALEKGASLAPGDSR  105 (414)
Q Consensus        89 A~~~~~~a~~l~p~~~~  105 (414)
                      |...-...+.-.-.+++
T Consensus       376 a~s~a~~~l~~eie~~e  392 (831)
T PRK15180        376 ALSTAEMMLSNEIEDEE  392 (831)
T ss_pred             HHHHHHHHhccccCChh
Confidence            87766655544444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.67  E-value=5.4  Score=39.90  Aligned_cols=92  Identities=13%  Similarity=-0.001  Sum_probs=68.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Q 015029           11 EAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKATACMK   82 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~----~P~~~~~~~~ra~~~~k---l~~~~~Al~~~~~Ai-~l~p~~~~a~~~~g~~~~~   82 (414)
                      .|-.-++|+.-|.+.+..-.+    -++.+.....+|.++.+   .|+.++|+..+..++ ...+.+++.+..+|.+|..
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            445567788888877654333    23446677788889988   799999999998844 4455688888888888765


Q ss_pred             c---------CChHHHHHHHHHHHHhCCC
Q 015029           83 L---------EEYETAKVALEKGASLAPG  102 (414)
Q Consensus        83 l---------g~y~~A~~~~~~a~~l~p~  102 (414)
                      +         ...+.|+.+|.++.+++|+
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            3         2367899999999998864

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.60  E-value=0.56  Score=27.60  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHH
Q 015029           72 AYWRKATACMKLEEYETAKVALE   94 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~   94 (414)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.48  E-value=1.5  Score=41.53  Aligned_cols=60  Identities=15%  Similarity=0.030  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        55 Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |+.+|.+|+.+.|.++..|.++|+++...|+.=.|+.+|-+++-...-.+.+...+..+-
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999998865544455555555444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=0.3  Score=47.72  Aligned_cols=80  Identities=19%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y   86 (414)
                      +.+.+.++.+.|..|+..-..++..++....+|+.|+.+++.+.++++|++++..+....|++....-.+...-....+|
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            35667788899999999988899989999999999999999999999999999999999999876655555544444443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.34  E-value=1.7  Score=27.91  Aligned_cols=32  Identities=16%  Similarity=0.028  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q 015029           37 ELFADRAQASIKLQNFTEAVAD--ANRAIELEPS   68 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~--~~~Ai~l~p~   68 (414)
                      +.++.+|..+...|+|++|+..  |.-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456667777777777777777  4366666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.40  E-value=6.2  Score=35.19  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      -.++..+|..|.+.|++++|++.|.++..-.-.   ....++++-.+.+..+++......+.++..+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            468889999999999999999999998765432   46688999999999999999999999987654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.11  E-value=13  Score=35.48  Aligned_cols=97  Identities=21%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC---------
Q 015029           11 EAFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EPS---------   68 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~----P~~----~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l----~p~---------   68 (414)
                      .+.++|+++.|..+|.++=...    |+.    +..+++.|...+..+ +|+.|+..+++|+.+    ...         
T Consensus         2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            3578999999999999976543    333    567788888899999 999999999999988    321         


Q ss_pred             -CHHHHHHHHHHHHHcCChHHHHH---HHHHHHHhCCCCHHHH
Q 015029           69 -MSKAYWRKATACMKLEEYETAKV---ALEKGASLAPGDSRFT  107 (414)
Q Consensus        69 -~~~a~~~~g~~~~~lg~y~~A~~---~~~~a~~l~p~~~~~~  107 (414)
                       ....+..++.+|...+.++....   .++.+..-.|+.+.+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             23466678889999888765444   3333444455555544

It is also involved in sporulation [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.96  E-value=1.1  Score=45.29  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~---------p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      .++.+..+|.-+|+|..|+...+.. .++         +.+...+|..|-||+.+++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888899999998876542 222         23566899999999999999999999988664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.85  E-value=5.4  Score=33.20  Aligned_cols=78  Identities=13%  Similarity=0.076  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Q 015029           37 ELFADRAQASIK--LQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASLA--  100 (414)
Q Consensus        37 ~~~~~ra~~~~k--l~~~~~Al~~~~~Ai~l~p~------------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~--  100 (414)
                      .+|..++.+-.+  -+-|++|..-|.+|......            +..+|--++.++..+|+|++++..-.+++...  
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            456666655544  47899999999999988643            34577789999999999999998888777542  


Q ss_pred             ---CCCHHHHHHHHHHH
Q 015029          101 ---PGDSRFTNLIKEFV  114 (414)
Q Consensus       101 ---p~~~~~~~~l~~~~  114 (414)
                         -....-..|+.-+-
T Consensus        88 RGEL~qdeGklWIaaVf  104 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVF  104 (144)
T ss_dssp             H--TTSTHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHH
Confidence               12334566766554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.82  E-value=3.7  Score=45.96  Aligned_cols=89  Identities=15%  Similarity=0.112  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----hHHHH
Q 015029           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-----YETAK   90 (414)
Q Consensus        16 g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~-----y~~A~   90 (414)
                      ..+.+|+..|++ |.-.|..+.=|...|.+|.++++|.+-++++..|++.-|+++..-+.+-.+.+++.+     -..|.
T Consensus       533 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (932)
T PRK13184        533 RDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL  611 (932)
T ss_pred             HHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888866 445677788899999999999999999999999999999887655555555554443     34566


Q ss_pred             HHHHHHHHhCCCCHH
Q 015029           91 VALEKGASLAPGDSR  105 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~  105 (414)
                      .++--++.+.|....
T Consensus       612 ~~~~~~~~~~~~~~~  626 (932)
T PRK13184        612 VFMLLALWIAPEKIS  626 (932)
T ss_pred             HHHHHHHHhCccccc
Confidence            777778888886543

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.80  E-value=2.6  Score=42.47  Aligned_cols=98  Identities=20%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA   59 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----------~P~~~~~~~~ra~~~~kl~~~----------~~Al~~~   59 (414)
                      |+--+...|..+...+.|.+|+..+-.|=+.           --+-+.+-+-+-.||+.+++.          ..|.+.|
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            4566788999999999999999887655332           222244445567788888643          3455555


Q ss_pred             HHHHHhC---------CC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           60 NRAIELE---------PS------MSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        60 ~~Ai~l~---------p~------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      .++.--+         ++      ....++.-|+..|+.|+-++|.++|+.+..
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5444221         22      234566789999999999999999998654

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.73  E-value=13  Score=37.34  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHHh
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIEL   65 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~--~~~~~ra~~~~--kl~~~~~Al~~~~~Ai~l   65 (414)
                      .....++..+|..++|..|.+.|...+..-|.+.  ..+..++.+|.  ..-+|.+|...++.++..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4567789999999999999999999988634433  45666666655  467899999999877754

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.58  E-value=11  Score=36.87  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHcCChHHHHHHHH
Q 015029           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA---CMKLEEYETAKVALE   94 (414)
Q Consensus        18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~---~~~lg~y~~A~~~~~   94 (414)
                      .+..+.+|.+||+.+|++..++..+-.+..+..+-+....-+++++..+|.+...|..+-..   .+..-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            56788899999999999999999888888899999999999999999999877665554333   233345677777787


Q ss_pred             HHHHh
Q 015029           95 KGASL   99 (414)
Q Consensus        95 ~a~~l   99 (414)
                      +|+..
T Consensus       127 ~~l~~  131 (321)
T PF08424_consen  127 KCLRA  131 (321)
T ss_pred             HHHHH
Confidence            77653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.54  E-value=8.4  Score=38.50  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SA-ELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK   76 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~~-~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-----~~~~a~~~~   76 (414)
                      .++.....+.++|-|..|++...-.+.++|. |+ .+++-+-...++.++|+=-+..++.......     ..+...|-+
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            3566677888999999999999999999998 64 3444455555677888877777776555211     144577889


Q ss_pred             HHHHHHcCCh---------------HHHHHHHHHHHHhCC
Q 015029           77 ATACMKLEEY---------------ETAKVALEKGASLAP  101 (414)
Q Consensus        77 g~~~~~lg~y---------------~~A~~~~~~a~~l~p  101 (414)
                      +.+++.+++-               +.|...+.+|+...|
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            9999999998               899999999998887

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.33  E-value=12  Score=39.32  Aligned_cols=96  Identities=18%  Similarity=0.099  Sum_probs=77.6

Q ss_pred             cCCHH-HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029           15 DDYFE-LAYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        15 ~g~y~-~Ai~~y~~AL~~~P~~~~~~~~--ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      .+... -|+..|...+.+++.++.++..  |+..+..++....+.-.+..++..+|.+..++..+|.++...|..-.+..
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~  122 (620)
T COG3914          43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA  122 (620)
T ss_pred             ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence            33433 3777777777788888877544  48888888999999999999999999999999999999999888777766


Q ss_pred             HHHH-HHHhCCCCHHHHHHH
Q 015029           92 ALEK-GASLAPGDSRFTNLI  110 (414)
Q Consensus        92 ~~~~-a~~l~p~~~~~~~~l  110 (414)
                      .+.. +....|.+.++...+
T Consensus       123 ~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         123 DISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHHHHhcCcchHHHHhhH
Confidence            5555 889999998877776

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.29  E-value=14  Score=38.82  Aligned_cols=115  Identities=18%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCC----------
Q 015029           15 DDYFELAYDLYSQAIEI-S-----------PNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEP----------   67 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~-~-----------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-----l~p----------   67 (414)
                      ...|++|...|.-|+.. +           |-....++.+|.++...|+.+.|....++++-     +.|          
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45588888888887775 3           33367889999999999998887777776662     122          


Q ss_pred             ------C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029           68 ------S---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus        68 ------~---~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                            .   ...+.|+.-..+.+.|.+..|.++|+..+.++|. |+-+...+-+..   .-++..++|..+...
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~---ALrareYqwiI~~~~  402 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY---ALRAREYQWIIELSN  402 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---HHHHHhHHHHHHHHH
Confidence                  1   2346677777888899999999999999999998 876554444443   223333445544433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.26  E-value=10  Score=36.09  Aligned_cols=81  Identities=17%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------
Q 015029           18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---------   84 (414)
Q Consensus        18 y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg---------   84 (414)
                      ...|+..|.++-...  ++.+.+++|.+|..-    .++.+|+..|.+|.+.+.  ..+++.++ +++..|         
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~  245 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL  245 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence            348999999988876  678899999888763    489999999999999887  88999999 777666         


Q ss_pred             ------ChHHHHHHHHHHHHhCCCC
Q 015029           85 ------EYETAKVALEKGASLAPGD  103 (414)
Q Consensus        85 ------~y~~A~~~~~~a~~l~p~~  103 (414)
                            +...|...+..+....+..
T Consensus       246 ~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         246 TAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCChh
Confidence                  6667777777766655543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.19  E-value=3.4  Score=38.07  Aligned_cols=62  Identities=21%  Similarity=0.159  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 015029           18 FELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATA   79 (414)
Q Consensus        18 y~~Ai~~y~~AL~~~P~--~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-~a~~~~g~~   79 (414)
                      +..|+..|.+|++....  .    ..+++.+|..+.++|++++|++.|.+++....... .....+|.-
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD  209 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            67888888888886432  2    57888899999999999999999999998654332 344555543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.96  E-value=11  Score=38.72  Aligned_cols=94  Identities=12%  Similarity=0.024  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------CH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIELEPS----------MS   70 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----------~~   70 (414)
                      -+.-.|.-...-+.|+.|..+|..|+++... +  +.+-.|+|..|++.++-+.-   ++-.-.+.|.          ..
T Consensus       369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~i~p~nt~s~ssq~l~a  445 (629)
T KOG2300|consen  369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL---YKALDLIGPLNTNSLSSQRLEA  445 (629)
T ss_pred             HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH---HHHHHhcCCCCCCcchHHHHHH
Confidence            3455677777888999999999999997433 3  34556789999997764443   2222234453          24


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      .++|..|...|..+++.+|...+.+.++..
T Consensus       446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  446 SILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            578889999999999999999999998876

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.90  E-value=13  Score=35.80  Aligned_cols=60  Identities=23%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                      ...-+.-+...+..+++.+|...|..++..+|.+..+.+.++.||..+|+++.|...|..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            345556677788899999999999999999999999999999999999999988877764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.70  E-value=15  Score=39.01  Aligned_cols=115  Identities=19%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------------------AELFADRAQASIKLQNFTEAVADANRA   62 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-------------------~~~~~~ra~~~~kl~~~~~Al~~~~~A   62 (414)
                      |+-+.+-|..-+...+++.|+.+..+|+.. |.+                   ..+|...+......|-++.....|++.
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri  503 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI  503 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            445566666677777888888877777664 222                   334444555555567777777788888


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        63 i~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      |.|.-..|..-.+.|..+.....|++|...|++++.|.+=-.....|..-+.+..
T Consensus       504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi  558 (835)
T KOG2047|consen  504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI  558 (835)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence            8877777777777787777777788888888888877765444555544444333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.64  E-value=16  Score=38.97  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHc
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMKL   83 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-----~~~~a~~~~g~~~~~l   83 (414)
                      ++..-.-|-++.....|++.|++.--.+..-.|.|..+....-+++|.+.|++-|.|-+     +....|+-.++.-+.-
T Consensus       484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            44445567777788889999888777788888888888888888999999999988865     2345667777776766


Q ss_pred             CChHHHHHHHHHHHHhCCC
Q 015029           84 EEYETAKVALEKGASLAPG  102 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~  102 (414)
                      -..+.|...|++|+...|.
T Consensus       564 ~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  564 TKLERARDLFEQALDGCPP  582 (835)
T ss_pred             CCHHHHHHHHHHHHhcCCH
Confidence            7788899999999988873

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.28  E-value=4.2  Score=41.33  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHH-------ccC-----HHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIK-------LQN-----FTEAVADANR   61 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------~~~~~~ra~~~~k-------l~~-----~~~Al~~~~~   61 (414)
                      ...+.|..++..|+|.+|+..|..+|..-|-.          ..-++.++.-|+-       ++.     .++..+.++.
T Consensus       206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL  285 (422)
T PF06957_consen  206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL  285 (422)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            34668999999999999999999998873221          1112222222211       112     2222223333


Q ss_pred             HH-----HhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           62 AI-----ELEPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        62 Ai-----~l~p~~~~a~~~~g~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      |.     .|.|.+...-+|.|+ ..|+.++|..|..+.++.+++.|....+.
T Consensus       286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~  337 (422)
T PF06957_consen  286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE  337 (422)
T ss_dssp             HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence            32     223334334445554 46789999999999999999999876443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.82  E-value=1.2  Score=26.15  Aligned_cols=24  Identities=17%  Similarity=-0.090  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADAN   60 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~   60 (414)
                      .+++.+|.+|..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356777777888888887776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.79  E-value=7  Score=29.94  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~---a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      -.+..|.-++...+.++|+....++++..++...   ++-.+..+|...|+|.+++.+-.+-
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677788899999999999999877554   4444667899999999988765443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=84.57  E-value=6  Score=32.41  Aligned_cols=69  Identities=13%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCHHHH
Q 015029           42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        42 ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~~g~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      +|..++..|++-+|++..+..+...+...   ..+..-|.+++.+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57788999999999999999999988654   667777887776653           2468889999999999775444


Q ss_pred             HHH
Q 015029          108 NLI  110 (414)
Q Consensus       108 ~~l  110 (414)
                      ..+
T Consensus        82 ~~l   84 (111)
T PF04781_consen   82 FEL   84 (111)
T ss_pred             HHH
Confidence            333

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=84.28  E-value=2  Score=41.61  Aligned_cols=69  Identities=9%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~-ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~   75 (414)
                      ..+.-.-+.|.|.+--..|.++|..+|.|+++|.. -+.-|.-.++++.+.+.|.++++++|..+..|+.
T Consensus       112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            34444556778888889999999999999999886 4455666799999999999999999998775543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.27  E-value=12  Score=35.48  Aligned_cols=90  Identities=9%  Similarity=0.067  Sum_probs=79.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL   93 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~-~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~   93 (414)
                      ..+..+-+++++++++.+|.|-..+..|-.+...+|++. .-+..+..++..+..+..||-.+-=++...+.|+.-+.+.
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~  170 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence            345677889999999999999999999999999999988 8899999999999999999999999999999999999998


Q ss_pred             HHHHHhCCCCH
Q 015029           94 EKGASLAPGDS  104 (414)
Q Consensus        94 ~~a~~l~p~~~  104 (414)
                      ...++.|-.|.
T Consensus       171 ~~Lle~Di~NN  181 (318)
T KOG0530|consen  171 DELLEEDIRNN  181 (318)
T ss_pred             HHHHHHhhhcc
Confidence            88888765443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=84.12  E-value=7.6  Score=39.99  Aligned_cols=64  Identities=14%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             HHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 015029           11 EAFID-DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW   74 (414)
Q Consensus        11 ~~~~~-g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~   74 (414)
                      .+.+. +.|.+--..|.++|..+|+++.+|+.-|.-.+..+. .+.|.+.|.++++.+|+++..|.
T Consensus       113 ~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  113 AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            33444 448999999999999999999999988777777665 99999999999999999876543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.94  E-value=6.7  Score=37.63  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      .+...+..+...|+++.++.++++.+..+|-+-.+|..+-.+|++.|+...|+..|.+.-.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35567788889999999999999999999999999999999999999999999999887765

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.31  E-value=42  Score=35.98  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHH
Q 015029            3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK   71 (414)
Q Consensus         3 e~~~~~g~~~~-~~g~y~~Ai~~y~~AL~~~P~~--~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~   71 (414)
                      ....+.|..++ .-.+++.|..++.+++.+..++  .    .+.+-++.+|.+.+... |+..++++|+.-..    ...
T Consensus        60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~  138 (608)
T PF10345_consen   60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY  138 (608)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence            44567788777 7889999999999998886432  2    23445577777777666 99999999988655    455


Q ss_pred             HHHHHHHHHH--HcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 015029           72 AYWRKATACM--KLEEYETAKVALEKGASLA--PGDSRFTNLIK  111 (414)
Q Consensus        72 a~~~~g~~~~--~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~  111 (414)
                      ..|++-.+.+  ..+++..|.+.++.+..+.  ..++.+.....
T Consensus       139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~  182 (608)
T PF10345_consen  139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS  182 (608)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence            5566553322  2379999999999988776  46665544433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.91  E-value=5.1  Score=40.53  Aligned_cols=105  Identities=13%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPN---------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~---------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      -..+.+.-.|||..|+..+.- |+++..         ....++..|-||+.+++|.+|++.|..++.--......+..+.
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~  205 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS  205 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            345677778999999998754 222221         2567889999999999999999999888742111110111111


Q ss_pred             HHHHH-cCChHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 015029           78 TACMK-LEEYETAKVALEKGASLAPG--DSRFTNLIKE  112 (414)
Q Consensus        78 ~~~~~-lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~  112 (414)
                      .-+-. .+..+.....+--|+.+.|.  +..+...+.+
T Consensus       206 ~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke  243 (404)
T PF10255_consen  206 YQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE  243 (404)
T ss_pred             chhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            11111 22334445556667777775  4545444443

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=82.86  E-value=7.8  Score=34.42  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             ccccCCC-eEEEEEEeCCCCCCc-eEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029          217 EFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  293 (414)
Q Consensus       217 dW~Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  293 (414)
                      +=.+.++ .++|.--+++|..++ +.|.+..+...|.+...+  .|.-.|.|-.++ ++.-++.+...-+||.|.+.+.
T Consensus        95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~  170 (177)
T PF05455_consen   95 DTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE  170 (177)
T ss_pred             eeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence            3344566 688888999998777 899998766666664332  355677787774 6766788888899999999753

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.66  E-value=4.4  Score=34.79  Aligned_cols=58  Identities=16%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      -....+.++...+..|+|.-|...+..++..+|+|..++....++.+.++....-..|
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~  126 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANW  126 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHH
Confidence            4566777888888888888888888888888888888888888888777665444433

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=82.34  E-value=8.4  Score=30.41  Aligned_cols=66  Identities=15%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             CCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeecccccccccCCcceEEEeC-cEEEEE
Q 015029          222 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIR  287 (414)
Q Consensus       222 ~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~  287 (414)
                      ++.-.|.|.+.+..+++|.|++.++.|.|+.....     |   ..|.-.+.|-..|+++..+-.+.. ..+.|.
T Consensus        14 ~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie   88 (91)
T cd06480          14 SEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE   88 (91)
T ss_pred             CCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence            44567889999999999999999999999864321     1   135556678888888887777773 344443

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.27  E-value=5.5  Score=38.31  Aligned_cols=58  Identities=21%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK   95 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~   95 (414)
                      ++...+..|...|.+.+|+..+++++.++|.+...+..+-.+|..+|+--.|...|++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            3344455666667777777777777777776666666666667777765555555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.23  E-value=9.6  Score=35.84  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVAL   93 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~~~g~~~~~lg~y~~A~~~~   93 (414)
                      +...+|..|+++|+|++|+..++.+...-..      ......++..|++.+|+.++.+...
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~  241 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS  241 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4445666666666666666666666544221      2345555666666666666655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.10  E-value=18  Score=31.33  Aligned_cols=81  Identities=12%  Similarity=0.002  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      ..++....+-+...++.++...+...--+.|..+...+.-|.++...|+|.+|...|.....-.+.-+.....+.-|...
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            45556666666788999998888888888999999999999999999999999999999888777777777777777743


Q ss_pred             H
Q 015029          117 L  117 (414)
Q Consensus       117 ~  117 (414)
                      +
T Consensus        91 l   91 (153)
T TIGR02561        91 K   91 (153)
T ss_pred             c
Confidence            3

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=81.98  E-value=2.7  Score=47.74  Aligned_cols=98  Identities=26%  Similarity=0.336  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYD------LYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~------~y~~A-L~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--------   66 (414)
                      |....+.|.....++.+.+|.+      +++.. ..+.|....+|..++..+.+++++++|+....+|+-+.        
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            4567788889999999998888      55532 33478889999999999999999999999999988663        


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      |+...+|..++...|..+....|+..+.+++.+
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            345779999999999999999999988887765

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.47  E-value=4.1  Score=31.07  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |..+..+|..+-..|+|++|+.+|..||+.
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            556777888888888888888888777664

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=81.42  E-value=10  Score=37.24  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=74.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA   92 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~~~~a~~~~g~~~~~lg~y~~A~~~   92 (414)
                      +-+|..=..+|+......|+ +..-+||+.+.-+..-.+.++...+-+....  ..+..+|--+|-.+.++|+..+|...
T Consensus       309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a  387 (415)
T COG4941         309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA  387 (415)
T ss_pred             CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence            34566666677766666665 5678889999988888888888777666542  23556777799999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 015029           93 LEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        93 ~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |++++.+.++..+....+.++.
T Consensus       388 ydrAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         388 YDRAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             HHHHHHhcCChHHHHHHHHHHH
Confidence            9999999998776555554443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.01  E-value=7.1  Score=36.08  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=37.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        45 ~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      .+++-+.+.+|+.++..-++-.|.+......+...|.-.|+|+.|...++-+-.+.|++.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            344556666666666666666666666656666666666666666666666666666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.90  E-value=6.8  Score=35.63  Aligned_cols=72  Identities=25%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHH
Q 015029           17 YFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        17 ~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~----~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      .-+.|+..|-++ +..|  +++++.+.+|..|. ..+..+|+..+.+++++...    +++.+.-++.+++.+|+|+.|-
T Consensus       121 ~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345666666442 2223  46888888887776 57889999999999999653    6899999999999999999874

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.81  E-value=2.9  Score=31.82  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |..+..+|..+=..|+|++|+.+|..||+.
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            556777788888888888888888887764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=80.56  E-value=4.4  Score=46.07  Aligned_cols=100  Identities=23%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------   65 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-------   65 (414)
                      +++.+...+..+...+++++|+..-.+|.-+        .|+....|.+++...+..++...|+..+.++..+       
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence            3567888999999999999999987776543        3455788999999999999999999999999977       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           66 -EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        66 -~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                       .|.-....-+++..+..+++++.|+.+++.|..+.
T Consensus      1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             34445566778888999999999999999998743

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.21  E-value=26  Score=35.27  Aligned_cols=103  Identities=10%  Similarity=0.056  Sum_probs=77.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCC---
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAY-WRKATACMKLEE---   85 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a~-~~~g~~~~~lg~---   85 (414)
                      ..+..-.++-+.+...+|+.+|++-.++..|..++.+.+  ++..-++.++++++.||.+..+| ||+-++-+....   
T Consensus        85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            334445677888889999999999999999999999875  47899999999999999876654 555555444444   


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ..+-+++..+++.-++.|-.+......+-
T Consensus       165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  165 EKEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             chhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            55666777778777887776666655444

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.17  E-value=4.1  Score=30.05  Aligned_cols=30  Identities=47%  Similarity=0.490  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |-.+..+|..+-..|+|++|+.+|..|++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445677888888888888888888887764

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
2xcm_C	92	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		1e-36
2jki_S	90	Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng		2e-36
1rl1_A	114	Solution Structure Of Human Sgt1 Cs Domain Length =		9e-13
1wao_1	477	Pp5 Structure Length = 477		3e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-09
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		4e-09
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-09
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		6e-09
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-08
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		8e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		5e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		6e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		7e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04

>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 92

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 81/91 (89%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 303
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 90

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/88 (79%), Positives = 80/88 (90%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 1   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
            KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 61  DKCKYEVLSTKIEICLAKADIITWASLE 88

>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain Length = 114

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 58/98 (59%)
Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct: 9   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 68
Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQR 310
            +  ++VLSTK+EI+L K E ++W  LE       P++
Sbjct: 69  EQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQ 106

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           AIEL+    K Y+R+A + M L ++  A    E    + P D
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 57/110 (51%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +  E    + FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  R
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
           AI ++P+ SKAY R   A   L ++  A    +K   L P +  + + +K
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 58/102 (56%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           AIEL+    K Y+R+A + M L ++  A    E    + P D
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10  KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
           KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+ 
Sbjct: 12  KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Query: 70  SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
            +AY RKATA + ++EY    ET   A  K A +  G S
Sbjct: 72  VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10  KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
           KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+ 
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206
Query: 70  SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
            +AY RKATA + ++EY    ET   A  K A +  G S
Sbjct: 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 245

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
             I+LEP+  K Y RKA A   +++Y  A    +K   L
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 3  TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62
           +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  + 
Sbjct: 5  NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
          ++L+P   K Y RKA A   L  +E AK   E+G
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+A  + +   A  K  ++ +A+    +A+EL+P+ +KA++R+ 
Sbjct: 25  YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  K  +Y+ A    +K   L P +++
Sbjct: 85  NAYYKQGDYQKAIEDYQKALELDPNNAK 112

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
             I L+    K Y RKA   + + E+  A+ A E    + P +
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANR 61
           L K+  E F    +  A   Y+QA+ +     + A L  +RA   +KL+++ +A  +A++
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115
           AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++   G
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  K  +Y+ A    +K   L P ++ 
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  A  
Sbjct: 14  LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
           ++P  SKA+ R   A   + +Y+ AK A EKG
Sbjct: 74  VDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  K  +Y+ A    +K   L P ++ 
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELYPNNAE 112

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	2e-34
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	6e-34
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	3e-30
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-26
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	8e-25
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-23
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-20
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	2e-17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	3e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-08
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-05
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	5e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	5e-04

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score =  122 bits (307), Expect = 2e-34
 Identities = 71/91 (78%), Positives = 81/91 (89%)

Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61

Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 303
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score =  121 bits (305), Expect = 6e-34
 Identities = 34/108 (31%), Positives = 59/108 (54%)

Query: 208 APARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 267
              + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L 
Sbjct: 4   MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELL 63

Query: 268 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPS 315
             IIP +  ++VLSTK+EI+L K E ++W  LE       P++     
Sbjct: 64  HPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADV 111

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134

 Score =  112 bits (282), Expect = 3e-30
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 212 PKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------------GEE 258
              +++ Y+K P+ VVV V+ K I      V F EQ  ++                    
Sbjct: 18  AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHT 77

Query: 259 AYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
            + +Q +L   I P +C +   +++++I L K +  +W  LE
Sbjct: 78  TFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  110 bits (276), Expect = 2e-29
 Identities = 35/103 (33%), Positives = 58/103 (56%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +   + KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           AIE +P+  +AY RKATA + ++EY +A   L+   +     +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 12/70 (17%), Positives = 28/70 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A    ++AIE  PN    +  +A A I ++ +  A+   + A   +  ++     + 
Sbjct: 54  FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113

Query: 78  TACMKLEEYE 87
              +  +  +
Sbjct: 114 IDQLYYKASQ 123

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           AE      +      ++  AV      I+  P  ++ Y  +A A  KL  +  A
Sbjct: 3  KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  106 bits (267), Expect = 3e-28
 Identities = 29/112 (25%), Positives = 56/112 (50%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
              +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
           + ++L+P   K Y RKA A   L  +E AK   E+G      + +    ++ 
Sbjct: 63  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  105 bits (264), Expect = 1e-27
 Identities = 29/112 (25%), Positives = 52/112 (46%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
             I L+    K Y RKA   + + E+  A+ A E    + P +      ++ 
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
          ++   I+P  A+   ++     K  ++  A+   N A++ +P  +  Y  +A    KL E
Sbjct: 3  ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 86 YETA 89
          ++ A
Sbjct: 63 FQRA 66

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  104 bits (262), Expect = 5e-27
 Identities = 30/103 (29%), Positives = 47/103 (45%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           +  L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           A  ++P  SKA+ R   A   + +Y+ AK A EKG        
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
            E A +    A  + P  ++ ++    A   + ++  A     + IE E +      ++ 
Sbjct: 61  HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120

Query: 77  -ATACMKLEEYETAKVALEKGASLAPGDSR 105
             T   K+EE              A G SR
Sbjct: 121 LETTKRKIEEANRGAEPPADDVDDAAGASR 150

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%)

Query: 30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
                ++       A++  + +++A+    +A+ + P+       +A A     ++E A
Sbjct: 5  MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  101 bits (255), Expect = 2e-26
 Identities = 32/112 (28%), Positives = 53/112 (47%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
             I+LEP+  K Y RKA A   +++Y  A    +K   L        +  + 
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 13/65 (20%), Positives = 30/65 (46%)

Query: 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
          +     ++P+ A +  ++     +  ++ +A+     AI+  P  +K Y  +A    KL 
Sbjct: 5  HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 85 EYETA 89
          E++ A
Sbjct: 65 EFQLA 69

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  102 bits (257), Expect = 3e-26
 Identities = 37/120 (30%), Positives = 64/120 (53%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +E   ++ Q A
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWR 75
           +  A    ++AIE+     + +  RA +++ L  F  A+ D    ++++P    +K  ++
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

Query: 76  KATACMKLEEYETAKVALEKGASLAPG 102
           +    +K + +E A    E   S+   
Sbjct: 123 ECNKIVKQKAFERAIAGDEHKRSVVDS 149

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  101 bits (253), Expect = 5e-26
 Identities = 29/102 (28%), Positives = 53/102 (51%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+EL+    KA++      +++E Y+ A   L++  SLA   
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 118

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 119 PSALRIAKKKRWNSIEER 136

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 28 AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87
             +   SA+   ++       + + EA A   RAI   P ++  Y  +A   +K+++ E
Sbjct: 1  GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 88 TA 89
           A
Sbjct: 61 QA 62

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  100 bits (252), Expect = 6e-26
 Identities = 38/111 (34%), Positives = 57/111 (51%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +  E    + FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  R
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
           AI ++P+ SKAY R   A   L ++  A    +K   L P +  + + +K 
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 19/68 (27%), Positives = 28/68 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A     +AI I P  ++ +     A   L    EAVA   +A+EL+P          
Sbjct: 62  YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

Query: 78  TACMKLEE 85
            A +KL E
Sbjct: 122 IAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
          E     AE         +K++NF  AV    +AIEL P+ +  +  +A A  KL  Y  A
Sbjct: 6  EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  105 bits (263), Expect = 8e-25
 Identities = 42/170 (24%), Positives = 81/170 (47%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +E   ++ Q A
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 122 VYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLET 171
                  +  +R    ++ +   +++    G  L   + T    K+ ++ 
Sbjct: 126 FERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQW 175

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 96.3 bits (240), Expect = 4e-24
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 6   EKKAK--EAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADAN 60
           + + +  E F    +  A   Y+QA+ +     +   L  +RA   +KL+++ +A  +A+
Sbjct: 30  QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
           +AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++ 
Sbjct: 90  KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 96.5 bits (240), Expect = 7e-23
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           A+EL+    KA++      +++E Y+ A   L++  SLA 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 114 PSALRIAKKKRWNSIEER 131

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 1  MATDLEKKAK--EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD 58
          M+   ++K +    F    +  A   Y Q I   P +   ++++A A IKL  +T+A+  
Sbjct: 1  MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98
            + +    +      R      +LE  + A  +++    
Sbjct: 61 CQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
           +  E   ++  +  K   + EAV   ++ I  +P     Y  KA A +KL EY  A    
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 94  EKGASLAPGDSR 105
           ++G         
Sbjct: 62  QQGLRYTSTAEH 73

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 84.3 bits (209), Expect = 7e-20
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   ++   +A+    F+ A   Y +A E+ P +     ++A    +  ++ +      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 62  AIELEP-------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           AIE+          ++KAY R   +  K E+Y+ A     K  +           
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 82.3 bits (204), Expect = 3e-19
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   +     A+    FE A+  Y +AIE+ P++   + ++A    + + F E V    +
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 62  AIELEPSM-------SKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           A+E+           +KA  R   A  K  +   A     +  S   
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
               ++A    D   A+ K ++F +A    ++AIEL+PS    Y  KA    + +++   
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 90  KVALEKGASLAP 101
               EK   +  
Sbjct: 62  VQFCEKAVEVGR 73

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 1/117 (0%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I+L+   + A  ++ 
Sbjct: 42  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL-MQNAVYLCWNYELLRR 133
              +K  + + A+   +K     P ++       + +    MQ       N      
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
           +++EP    A   +A A +  E Y+ A    E        D +    +++
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 22/103 (21%), Positives = 45/103 (43%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
              L  +A  AF    +  A     + +E+    AEL   RA+  IK     +A++D   
Sbjct: 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           A +L+   ++A+++ +T   +L ++E +   + +   L     
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
                      A   ++   Y  A    E      P  + +
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 78  TACMKLEEYETA 89
            A   L++ +  
Sbjct: 371 KAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+A  ++ 
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +     DL ++     S    E   +  +  +      +A++  + A++ +P    AY+R
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
           +AT  + + + + A   L K   L    + 
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA----- 72
            + A    ++ I++  +       R    +K     EA  D  + ++  PS ++      
Sbjct: 76  SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135

Query: 73  ----------YWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
                        +A       +Y  A   L+K   +   D+  
Sbjct: 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.8 bits (203), Expect = 6e-18
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+  +AY RKA
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTN 108
           TA + ++EY +A   L+   +     +  ++
Sbjct: 215 TAQIAVKEYASALETLDAARTKDAEVNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +E A    + A+E        +   +++  ++ N    + D  + IE     S    R A
Sbjct: 54  YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTA 112

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
               KL   E      E  A + P
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNP 136

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
          F+ A + Y++A E+  +   L  +RA A  +   +  A++  N A+E    M   Y   +
Sbjct: 21 FDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79

Query: 78 TACMKLEEYETAKVALEK 95
           +  ++         L+K
Sbjct: 80 KSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 17/88 (19%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E           ++P  AE      +      ++  AV      I+  P  ++ Y  +A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  KL  +  A     K     P   R
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + IE    S       A    KL+N  + +  A     + P  ++    + 
Sbjct: 88  AYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  ++  A  A  +    AP D+R
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 9e-10
 Identities = 12/70 (17%), Positives = 28/70 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A    ++AIE  PN    +  +A A I ++ +  A+   + A   +  ++     + 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

Query: 78  TACMKLEEYE 87
              +  +  +
Sbjct: 249 IDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
            + A+          K + F EA+   N+A EL   ++     +A A  +  EYETA   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 93  LEKGASLAPGDS 104
           L           
Sbjct: 61  LNDAVEQGREMR 72

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 14/87 (16%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I L+   + A  ++ 
Sbjct: 19  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              +K  + + A+   +K     P + 
Sbjct: 79  HLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +++EP    A   +A A +  E Y+ A    E        D 
Sbjct: 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 18/87 (20%), Positives = 40/87 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A     + +E+    AEL   RA+  IK     +A++D   A +L+   ++A+++ +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
           T   +L ++E +   + +   L     
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHK 222

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 14/70 (20%), Positives = 31/70 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 78  TACMKLEEYE 87
            A   L++ +
Sbjct: 348 KAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 11/96 (11%), Positives = 29/96 (30%), Gaps = 12/96 (12%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAP 101
                      A   ++   Y  A    E      P
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+   ++ 
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
            + A    ++ I +  +       R    +K     EA  D  + ++  PS  +      
Sbjct: 53  SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
                        +A       +Y  A   L+K   +   D+    L
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 36  AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
            E   +  +  +      +A++  + A++ +P    AY+R+AT  + + + + A   L K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 96  GASLAPGDSR 105
             +L    + 
Sbjct: 63  VIALKMDFTA 72

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 201 SNEAAMAAPARPKY-----RHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI 252
           S  + + AP    Y      + + Q  + V + +   G+   P +NV V F E+   + +
Sbjct: 3   SGSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLV 62

Query: 253 DVPGEEAYHFQ-PRLFGKIIPAKCRYEVLSTKVEIRLAKA-EPIQWSSLEFSK 303
                ++Y      L   I       +V +  V I   K  E  +W  L   +
Sbjct: 63  KNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVE 115

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 74.4 bits (183), Expect = 9e-16
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE----------------LFADRAQA 45
           A D++++  E F  +    A   Y +A++   ++ E                   + A  
Sbjct: 38  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             K +++ +A+  A++ ++++ +  KA ++   A M     E AK  L K ASL P +  
Sbjct: 98  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157

Query: 106 FTNLIKE 112
             N  + 
Sbjct: 158 IRNSYEL 164

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---------------LFADRAQAS 46
           +T ++++    F +  ++ A   Y + +      +                   + A   
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206

Query: 47  IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
           +KLQ F+ A+   N+A+EL+ +  K   R+  A + + ++E A+   +K   L P +   
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266

Query: 107 TNLIKE 112
              +  
Sbjct: 267 KTQLAV 272

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 70.9 bits (174), Expect = 7e-15
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAI------------------EISPNSAELFADR 42
               L +K  E F+   ++ A D Y  A+                  E+   +  L+A+ 
Sbjct: 10  SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           +Q  + + +  EA   ++  ++ E +  KA +R+A A +   + + A+  L+      P 
Sbjct: 70  SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

Query: 103 D 103
            
Sbjct: 130 A 130

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A +  S+ ++    + +    RA+A I      EA  D    +   P+ +    R+ 
Sbjct: 79  LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138

Query: 78  TACMKLEEYETAK 90
               +    + A 
Sbjct: 139 KIVTERRAEKKAD 151

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 24/94 (25%), Positives = 41/94 (43%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +    F    F  A   Y  AIE+ PN    +++ +   I   +  + +    +
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
           A+E++P  SKA  R+A+A   L  +  A   L  
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +  +  + +A++++P     +  R Q    LQ++  A  D  +A  L P     Y + A
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
               K  ++  ++    +     P
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFP 375

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK----------------LQNFTEAVADANR 61
           F+ A   Y  A  +     ++         K                 + F  A+    +
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110
           A EL+P   +A    A   +++E+ + A    E  A LA          
Sbjct: 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L  ++I + P     +   A      +N  E      +A++L P     Y+ + 
Sbjct: 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                L++Y+ AK   +K  SL P
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNP 341

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + + +A  ++P +   +   A    K   FTE+ A  N      P++ +     A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  +++TA    +    L  
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEE 409

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 11/72 (15%), Positives = 21/72 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  +   +++     P   E+    A+      +F  A+   + A  LE    K +    
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 78  TACMKLEEYETA 89
               K       
Sbjct: 420 PLIGKATILARQ 431

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D +       +    +  N+A              N  +A      +I L P+   +Y  
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF 281

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A      E  +      +K   L P   
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYP 310

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A  L ++A E+ P S +     AQ  ++++   EA+     +  L  +M +    +A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--QA 501

Query: 78  TACMKLEEYETA 89
           T   +  + +  
Sbjct: 502 TTFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 18 FELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
                  +Q   +SP+  + +A     R       +NF EA+     AIEL+P+    Y
Sbjct: 3  HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62

Query: 74 WRKATACMKLEEYETAKVALEK 95
             +   +   + E       K
Sbjct: 63 SNISACYISTGDLEKVIEFTTK 84

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 8   KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK--LQNFTEAVADANRAIEL 65
           +         ++ AY L S A++   ++ +     A   +      +   ++       L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
             + + A                A+V L++  +L P  + +  L
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E   +  ++A+EI P+ ++    RA A+  L NFT+A+ D +  + L      A     
Sbjct: 75  LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPM 133

Query: 78  TACMKLEEY-----ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE 129
                 ++      E       +G+ + P ++   +    F   L  ++V    NY+
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 5e-14
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
          A  L+ K  + F +  ++ A   Y+ A+E+  +    +++ +   + + +  + V  + +
Sbjct: 6  ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
          A+EL+P  SK   R+A+A   L ++  A   L  
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 17/87 (19%), Positives = 40/87 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y+ + +A+++  N++ ++  R Q +  LQN+ +A  D ++A EL+P     Y + A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  +++  +    +     P   
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAP 372

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK---------LQNFTEAVADANRAIELEPS 68
           F+ A   Y  AIE+      ++   A    K         ++NF EA     +A +L+P 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
             +A    A   ++ E+ + A    E+ A LA 
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A++   +AIE+ P     +   A       + TE     ++A++L+ + S  Y+ + 
Sbjct: 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L+ Y+ A    +K   L P + 
Sbjct: 312 QMNFILQNYDQAGKDFDKAKELDPENI 338

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 11/88 (12%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A   + +A E+ P +   +   A  + +   F +     + A    P   +     A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  +++ A    +    L      
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            FE   D  ++  ++    A              +   A  D  +AIEL P ++ +Y   
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDS 104
           A       +        +K   L   +S
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNS 304

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+    L+S+A    P + E+    A+      +F +A+   + AIELE  +   Y   A
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413

Query: 78  TACMK---------LEEYETAKVALEKGASLAP 101
               K         +E +  A   LEK + L P
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A +L  +A ++ P S +     AQ  ++ ++  EA+     + +L  +M +    +A
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL--QA 488

Query: 78  TACMKLEEYETA 89
               +  + +  
Sbjct: 489 ITFAEAAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIE 64
           + +   A  D+  E   +L +    +   S E +    ++  K  + F E +   N   +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           L+  ++ +            +   A   ++K   L P  + +  +
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 11/118 (9%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA---IELEPSMSKAYW 74
            +   ++ ++A+E+ P+ +++   RA A+  L  F +A+ D +      +   +  +   
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 75  RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR 132
            +      + + +     ++   +     S      ++     + +   +   + + +
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
              A    D+     + + + +A+   N A+EL+      Y   +   + + + +     
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 93  LEKGASLAPGDSR 105
             K   L P  S+
Sbjct: 62  STKALELKPDYSK 74

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 12/81 (14%), Positives = 28/81 (34%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             +     +    ++  L     +   + + F  A+     A++ +P+ S A+       
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 81  MKLEEYETAKVALEKGASLAP 101
               +   A+ A E G + A 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQ 84

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   Y  A++      +++           NF  A+    + I    +  K ++   
Sbjct: 90  DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A    +EY  A  +  K   L P
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKP 173

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR---AIELEPSMSKAYW 74
           +  A +++++      NS  ++  RA    +L  +  A  D       +    + S  + 
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 75  RKATACMKLEEYETAKVALEKGASLAP 101
                 MK  +   A    +       
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDT 105

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F LA     + I  +    ++F +  QA    + + +A +   + +EL+P++   Y  +A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 78  TACMKL---EEYETAKVALEKGASLAPGDSRFTN 108
            A        +   AK   EK   +         
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 10/84 (11%), Positives = 26/84 (30%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             + Y   +  +   +  F    +  +K    + A+     A++ + +    Y +  +  
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
                +  A   +EK       D 
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDP 142

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSK--- 71
           +  A   + + +E+ PN    +  RA+A+      T    A     + IE+         
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 72  -----AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                A    A       +   A  A +   +L P + 
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
          + ++    A    K  N+ EA+   N+    + +    Y R+A    +L +Y+ A+  +E
Sbjct: 2  NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 95 K 95
           
Sbjct: 62 T 62

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 15  DDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELE 66
           D    LA   Y + IE+             E     A      ++  +A A     + L+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 67  PSMSKAYWRKATACMKLEEY 86
           P+  KA             +
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 12/109 (11%), Positives = 33/109 (30%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
               L       +    ++ A  ++     +    A  F         L  + +A+   +
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
               ++ +  +  +  A   ++L + + A+       +LA        L
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 11/81 (13%), Positives = 25/81 (30%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
            +    +S ++ E          +   + +A         L+   ++ +         L 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 85  EYETAKVALEKGASLAPGDSR 105
            YE A  +   GA +   + R
Sbjct: 67  LYEQALQSYSYGALMDINEPR 87

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +E A   YS    +  N        A+  ++L +   A +    A  L  +        A
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

Query: 78  TACMKLEE 85
            A   LE 
Sbjct: 128 RAGAMLEA 135

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVS-IDVPGEEAYHFQPRLFGKIIPAKCRY 277
           Y + + V +    +   +K+V V+F +  L+ S +       +  +  LF  I P   ++
Sbjct: 9   YDRRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKH 66

Query: 278 EVLSTKVEIRLAKAEPIQ-WSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 336
           +     +   L K E  Q W  L   +                 +  + S     VD++ 
Sbjct: 67  KRTDRSILCCLRKGESGQSWPRLTKERA----------------KLNWLS-----VDFNN 105

Query: 337 LEAQVKKEEKEEKLDGDAALNKFFQ 361
                 K+ +++  +  +  ++F +
Sbjct: 106 W-----KDWEDDSDEDMSNFDRFSE 125

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 65.8 bits (160), Expect = 5e-12
 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 17/129 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-----------------LFADRA 43
            A   +      F ++  E A   Y  AI    +                       + A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237

Query: 44  QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
              IKL+ + EA+   N  +  E    KA +R+  A  +L + ++A+    K    AP D
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297

Query: 104 SRFTNLIKE 112
                 ++ 
Sbjct: 298 KAIRRELRA 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 16/87 (18%), Positives = 30/87 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A + Y  A+ + P+  + + + A A +   +   AV     A++  P +        
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L   E AK    K     P  +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFA 169

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 17/86 (19%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + +    + AI+ +P  AE +++      +     EA+     A+ L+P     Y   A
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A +   + E A  A        P  
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 18/84 (21%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +   +  + + A +  ++   ++P
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISP 370

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 23/84 (27%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  +      A+        L P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCP 302

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +AIE  PN A  +++             A+    +A+ L+P+   AY    
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +   ++ A  A  +  SL+P  +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHA 237

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y  A++ +P+   + +D       L    EA A   +AIE +P+ + A+    
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  E   A    EK  +L P
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   + +A+ + PN  + + +      + + F  AVA   RA+ L P+ +  +   A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +    + A     +   L P  
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA D Y +AIE+ P+  + + + A A  +  +  EA    N A+ L P+ + +    A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +    E A     K   + P  +
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFA 339

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 13/86 (15%), Positives = 28/86 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           FE A     Q     P++  +    +    + +    +   +  AI+  P +++AY    
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +  + + A         L P  
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLEE 85
               ++++
Sbjct: 381 NTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 6/63 (9%), Positives = 16/63 (25%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGD 103
           P  
Sbjct: 64  PLL 66

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 88  VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 147

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 12/86 (13%), Positives = 21/86 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE         +   +    D
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQV 378

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 14/84 (16%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 420 GGKQALETVQRLLPVLCQAHGLTP 443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A    +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 386 GGKQALETVQRLLPVLCQAHGLTPEQV 412

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQV 242

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A  +     L+     +    +A  L P    A     
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 13/81 (16%), Positives = 21/81 (25%)

Query: 24  LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83
           L    + ++P      A        L+     +    +A  L P    A          L
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 119

Query: 84  EEYETAKVALEKGASLAPGDS 104
           E  +     L +   L P   
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQV 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 19  ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78
            +A +L    +++        A R   +          A     + L P    A      
Sbjct: 21  TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80

Query: 79  ACMKLEEYETAKVALEKGASLAPGD 103
               LE  +     L +   L P  
Sbjct: 81  GKQALETVQRLLPVLCQAHGLTPQQ 105

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            + A  +Y + +++  ++            +  +   + +    + +     M  A +R 
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
             + +    YE A+ +L+K     P       L K
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ AY  Y + ++ +PN+ +     A+  +      +A+    + ++LE     A     
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 78  TACMKLEEYETAKV-ALEKGASLAPGDS 104
                  E E  K+    K  S      
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELF----------------ADRAQASIKLQNFTEAVADANR 61
              A   + Q I ++ +  E++                 + A A  K +N+ +A      
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            ++  P+        A   +   + + A    EK   L   + 
Sbjct: 80  LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 4/53 (7%), Positives = 14/53 (26%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +  +   +   + +               + +    + +A     + I   PS
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
               +K+ ++  AV     A+E++PS +KA +R+A     L+EY+ A   L+K   +AP 
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

Query: 103 D 103
           D
Sbjct: 340 D 340

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAE----------LFADRAQA 45
            A  +++K    F    +  A   Y + +         +  E           F + A  
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            +KL+ +T+AV   ++A+ L+ +  K  +R+  A + + E+E+AK   EK   + P +  
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 106 FTNLIKE 112
               I  
Sbjct: 387 ARLQISM 393

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWR 75
           +  + DL+ +AI++ P  ++ +  + +A   L+ + EAV   N  I +         +  
Sbjct: 22  YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
           KA A   +E  E      E  A L    
Sbjct: 82  KADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%)

Query: 31  ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90
           +   + E +           N+TE++    +AI+L+P  SK +  K  A   LE YE A 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 91  VALEKGASLAP 101
                  ++  
Sbjct: 61  DCYNYVINVIE 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 70/466 (15%), Positives = 132/466 (28%), Gaps = 172/466 (36%)

Query: 5   LEKKAKEA---FIDDYFELAYD------------------LYSQAIEISPNSAELFAD-- 41
           L  K +E    F+++   + Y                   +Y +  +   N  ++FA   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 42  --RAQASIKLQNF--------------------TEAVADANRAIELEPSMS-KAYWRKAT 78
             R Q  +KL+                      T    D   + +++  M  K +W    
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---- 186

Query: 79  ACMKLEEYETAKVALEKGASL---------APGDSRF-----TNLIKEFVGLLMQNAVY- 123
             + L+   + +  LE    L         +  D         + I+  +  L+++  Y 
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 124 ---LCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGPTNVVSTN 180
              L     +L  V N          + F+   C            + L       ++T 
Sbjct: 245 NCLL-----VLLNVQNAKA------WNAFNLS-C------------KIL-------LTTR 273

Query: 181 NVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVT 240
             Q    +S+       +D  +                   P+E V ++  K        
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT-------------LT--PDE-VKSLLLK-------- 309

Query: 241 VDFGEQILSVSI-DVPGEEAYHFQPRLFGKIIPAKCR-------------YEVLSTKVEI 286
                  L     D+P  E     PR    II    R              + L+T +E 
Sbjct: 310 ------YLDCRPQDLP-REVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 287 RLAKAEPIQWSSLEFSKGAVVPQRVN-PPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 345
            L   EP ++  + F + +V P   + P  +               + W  +        
Sbjct: 362 SLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS-------------LIWFDVIKSD-VMV 406

Query: 346 KEEKLDGDAALNKFFQE-------IYAD--ADEDTRRAMKKSFVES 382
              KL   + + K  +E       IY +     +   A+ +S V+ 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA + +SQA+ I P+  E+F        +  NF  A    +  +EL+P+ + A+  + 
Sbjct: 59  RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A       + A+  L       P D
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ AY+ +   +E+ P       +R  A         A  D     + +P+         
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY 123
            A  KL+E + AK  L++    +  +    N+++ ++G + +  + 
Sbjct: 153 LAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
            E+      Q +          A+L  +R      L     A  D ++A+ + P M + +
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80

Query: 74  WRKATACMKLEEYETAKVALEKGASLAP 101
                   +   ++ A  A +    L P
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDP 108

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 7/78 (8%), Positives = 21/78 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E      +    ++ + +E      +  + L +   A A    A+         +    
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256

Query: 78  TACMKLEEYETAKVALEK 95
                L + +      ++
Sbjct: 257 LELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKA 77
           A ++  Q  E S      +         +          ADA     L   +S+  +   
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
              + L + ++A    +   +    +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHN 248

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 13/108 (12%), Positives = 31/108 (28%)

Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L   A   +    +E A+ ++     +    +  F         +  +  A+   +    
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
           ++    +  +  A   ++  E   A+  L     L      F  L   
Sbjct: 84  MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 13/88 (14%), Positives = 28/88 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                   +   EIS ++ E     A    +   + +A         L+   S+ +    
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                + +Y+ A  +   GA +   + R
Sbjct: 63  ACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA   YS    +           A+  ++     EA +    A EL  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 78  TACMKLEEYETAK 90
                LE  +  K
Sbjct: 131 RVSSMLEAIKLKK 143

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIE 64
           +   K+  + +  E       + +  +   A+    + +A     +++ EA    ++A++
Sbjct: 72  DAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           LEP + +A+ +      K  +  +A        +         NL
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           AY    +    + ++ +L  +RA      +++ EA+   ++A  L+P+  +   R+    
Sbjct: 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302

Query: 81  MKLEEYETAKVALEK 95
             L    +   +  K
Sbjct: 303 EFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 19/182 (10%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------LFADRAQASIKLQNFTEAVAD 58
           +         +   +      A+++                +         +   +A++ 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 59  ANRAIELEPSMSK---AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG 115
             +A +++   S     +  +AT     E Y  A     + A+L P         ++ + 
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303

Query: 116 LL--MQNAVYLCWNYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQPLETGP 173
            L  + + +      E   +   K +   + SL     G C     ++   QK  LE  P
Sbjct: 304 FLSRLTSLL------ESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP 357

Query: 174 TN 175
            +
Sbjct: 358 LS 359

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           DY   A  L S+A+++ P   E +    +   K  + T A    + A+    +   +   
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175

Query: 76  KATACMKLEEYETAKVALEKGASLA 100
            +    +L+     + +     S+ 
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVR 200

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
              + A   ++F+ A  L  +        A  +A+   A  KL+ +  A+   N+ + L 
Sbjct: 489 SDMQTA--INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
            + +  +   A   +  +    A   L +  +++P +   ++L+K 
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMS 70
             LA +    +  +      L  +    +    +   A+     A+ L           +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +     A  KL+ Y+ A  AL +G  L+  D+
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 9/84 (10%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F     + ++ +EI P + +++     +  +     +    +N  ++  P  +  +    
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + + +   A+    K +++ P
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDP 404

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y + +  ++  P  A  +       + +   +EA    +++  ++P    A+   A
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            +     E++ A  A    A L  G 
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 14/88 (15%), Positives = 26/88 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +S++  + P     +   A +        +A++    A  L       Y    
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
              M+L     A   L+   +L   D  
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPL 476

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 10/84 (11%), Positives = 21/84 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y+ A  +   +   +       ++L N   A      +  L            
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  + +TA    +    L  
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVK 506

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D    A D Y  +I     S++L   +A        F + +A   + +E++P     Y  
Sbjct: 286 DELRRAED-YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344

Query: 76  KATACMKLEEYETAKVALEKGASLAP 101
              +  +  E     +         P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHP 370

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D  +Q + +S N A +    A   +  +    A+   + ++ + P+   A     
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591

Query: 78  TACMKLEE 85
            A   LEE
Sbjct: 592 RA---LEE 596

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 16/84 (19%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +A+E+  ++A  +       +  + + EA     +A+         ++   
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           T  +KLE+ + A   L++   L  
Sbjct: 133 TVLVKLEQPKLALPYLQRAVELNE 156

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 21/84 (25%), Positives = 39/84 (46%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +E A + +++AIE +   A  + + A     +     A+A  ++A+EL+ S + AY+   
Sbjct: 39  YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +  E Y+ AK   EK      
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRAGM 122

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D++ +A+     + +LF       +KL+    A+    RA+EL  + ++A ++  
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                    + A           P
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDP 190

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA     +A+E++ N  E                EA++      E +P  + A++   
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E  E A   L+K   + P
Sbjct: 201 VTYAYKENREKALEMLDKAIDIQP 224

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 25  YSQAIEISPNSAELFADRAQA----SIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           +  +  + P  + + +           +  ++ +A     +AIE     +  Y   A   
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 81  MKLEEYETAKVALEKGASLAP 101
             + E E A    +K   L  
Sbjct: 68  SSVNELERALAFYDKALELDS 88

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   ++   E  P  A+ F +        +N  +A+   ++AI+++P    A   K 
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

Query: 78  TACMKLEEY 86
                   +
Sbjct: 235 LLGHHHHHH 243

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 12/98 (12%), Positives = 26/98 (26%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
             A + +     E A   +         + +     A      + F +A      A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            +     +      ++L+    AK   E     +  + 
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 1/102 (0%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
             E ++    + D    +         I  +  +     A          EA        
Sbjct: 5   ITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             +          A      E+++ A        +L   D  
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 1/94 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + + + P   E  A   +     Q   EA     +A +  P          
Sbjct: 39  TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR-FTNLI 110
            A     + E A  A  +   L P +      L+
Sbjct: 99  HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 15/86 (17%), Positives = 27/86 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                     A+   P     +   A A + + + T       R + L P   +A  R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                 + +  A V L++ +  AP  
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEH 90

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 13/72 (18%), Positives = 21/72 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L  QA + +P    +      A         A A   RA +L P       +  
Sbjct: 73  HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

Query: 78  TACMKLEEYETA 89
               +L ++   
Sbjct: 133 NWRRRLCDWRAL 144

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK------ 71
            +LA   +SQA+ I+P    +  +    + +   +  A      A+E   ++        
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 72  ---AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                      C KL++Y  A     +   L P ++
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 25/91 (27%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           +    E A    S+A  +       +     +        +A+A    A +L        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
                        + A+    +  S+AP D 
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 18  FELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           ++ A   +  A+E                L  +      KL+ + EA+    +A+ L P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
            +  Y         +  +E A         L   D+    ++  
Sbjct: 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 27/77 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A D + QA+ + P +A  ++        + NF  AV   + A+ L    + +     
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 78  TACMKLEEYETAKVALE 94
                      A +  +
Sbjct: 312 HCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 10/87 (11%), Positives = 21/87 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y  A ++                   N   A    ++A+ + P          
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  E++TA+              
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F++ Y L S  +E  P  A          ++L    E    +++ ++L PS   +++   
Sbjct: 38  FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97

Query: 78  TACMKL-EEYETAKVALEKGASLAP 101
              + +  + E A+  L K  +L  
Sbjct: 98  CYYLMVGHKNEHARRYLSKATTLEK 122

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 9/85 (10%), Positives = 28/85 (32%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           Y + +  +  ++++    + ++    A+      +F       +  +E +P  +      
Sbjct: 3   YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
               ++L +         K   L P
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYP 87

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.2 bits (145), Expect = 6e-10
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y +AI ISP  A+ +++      ++Q+   A+    RAI++ P+ + A+   A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 78  TACMKLEEYETAKVALEKGASLAPG-DSRFTNLI 110
           +          A  +      L P     + NL 
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               ++++ + A     +   + P  +
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFA 111

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y++AI+I+P  A+  ++ A       N  EA+A    A++L+P    AY   A
Sbjct: 93  VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                + ++      ++K  S+  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVA 176

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+   +  + + A +
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 92  ALEKGASLAPGD 103
             ++   ++P  
Sbjct: 65  HYKEAIRISPTF 76

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 14/84 (16%), Positives = 27/84 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A  L  Q  +      ++      A +K            R++   P   K      
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +++++Y+ A   L K A   P
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA  L  +  E +P +  +      A   L  F EA+     A+ L P+  K +   A
Sbjct: 92  YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +  ++  +E A    +K   L  G S
Sbjct: 152 FSYEQMGRHEEALPHFKKANELDEGAS 178

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +   +L  +++  +P++ ++        +++Q +  AV    +  E  P      +R  
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A   L  ++ A  + +    L P
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRP 141

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           F+ A D +  A+ + PN  ++    A +  ++    EA+    +A EL+   S   
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
                 + D+  +  K   +++AV    +  + +            A +K    +     
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 93  LEKGASLAP 101
           LE+  + AP
Sbjct: 65  LERSLADAP 73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A     +A+E+ P+ A+L+              EA+   NRA+++ P   +  +  A
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +   + +Y+ A   L +   +  G +
Sbjct: 248 VSYSNMSQYDLAAKQLVRAIYMQVGGT 274

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    + +P   E +        + +    A+   N A  L+P     +   A
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 97  VSHTNEHNANAALASLRAWLLSQP 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 21/88 (23%), Positives = 36/88 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +     L   A+E++PN A+L A          N+  A A+  RA+EL P  ++ + +  
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                    + A  A  +   + PG  R
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA    + A  + P    + A  A +     N   A+A     +  +P   +      
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 78  TAC---------------MKLEEYETAKVALEKGASLAPGD 103
            A                    EY   +  L     + P D
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 15/102 (14%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASI---------------KLQNFTEAVADANR 61
               A       +   P   +L +   QA +                   + E     + 
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+E+ P+ ++ +            Y++A   L +   L P D
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y           E   +   + +KL N  EA        +  P   +A+        + E
Sbjct: 10  YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69

Query: 85  EYETAKVALEKGASLAPGD 103
           +   A +AL     L P D
Sbjct: 70  KDGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A D Y++A++I+P    +  + A +   +  +  A     RAI ++   +      +
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281

Query: 78  TACMKLEEYETAKVALE 94
                   ++  ++ L 
Sbjct: 282 RE-ATRSMWDFFRMLLN 297

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 14/84 (16%), Positives = 24/84 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTP 393

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 276 VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  + P+     A        L+     +    +A  L P    A     
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 12/86 (13%), Positives = 22/86 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  Q   ++P      A        L+   + +    +A  L P    A     
Sbjct: 445 VQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNI 504

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L   +     L +   L P  
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L  
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L      A     
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTP 732

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L  
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQ 596

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 4/98 (4%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
              A EA +         L    + ++P      A        L+     +    +A  L
Sbjct: 166 GVTAMEA-VHAS---RNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
            P+   A          LE  +     L +   L P  
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 12/82 (14%), Positives = 23/82 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +   L P+   A     
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 78  TACMKLEEYETAKVALEKGASL 99
                LE  +     L +   L
Sbjct: 471 GGKQALETVQQLLPVLCQAHGL 492

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 13/87 (14%), Positives = 22/87 (25%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  QA  ++       A        L+     +    +A  L P    A    
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 77  ATACMKLEEYETAKVALEKGASLAPGD 103
                 LE  +     L +   L P  
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++       A        L+     +    +A  L P+   A     
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 403

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 404 GK-QALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 14/88 (15%), Positives = 23/88 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L      +    +A  L P    A     
Sbjct: 479 VQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNG 538

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                LE  +     L +   L P    
Sbjct: 539 GGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 13/86 (15%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L      A     
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 13/86 (15%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P+   A     
Sbjct: 717 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNI 776

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L    
Sbjct: 777 GGKQALETVQRLLPVLCQDHGLTLAQ 802

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHD 436

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 437 GGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 11/85 (12%), Positives = 21/85 (24%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  QA  ++P      A        L+     +    +   L  +   A    
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 LE  +     L +   L  
Sbjct: 810 IGGKQALETVQRLLPVLCQAHGLTQ 834

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 11/85 (12%), Positives = 20/85 (23%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  Q   ++       A        L+     +    +A  L      A    
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 LE  +     L +   L P
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTP 868

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA---SIKLQNFTEAVADANRAIELEPSMSKAYW 74
           +  +   Y QA+++   +AEL+A  A             +  A  ++A+ L+ +   A  
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 75  RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
             A+       Y  A    +K   L       T L++
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E         I  +P ++E +A   +  +   +++ ++    +A++L    ++ Y   A
Sbjct: 26  PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85

Query: 78  TACMKLEEY---ETAKVALEKGASLAPGDSR 105
           T              +  ++K  +L   +  
Sbjct: 86  TVLYYQASQHMTAQTRAMIDKALALDSNEIT 116

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A D ++ A+ + P    L+              EAV    RA+E++P   ++ +   
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  Y  A        SL  
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQR 312

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             +       AI   P  AE +        + +N   A+    R +EL+P+  KA    A
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +       + A  AL+      P
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNP 164

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDL--------YSQAIEISPNSAELFADRAQASIKLQNF 52
           M  + E+ A+  +I +  E    +        Y    E          +     +K  + 
Sbjct: 22  MQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDL 81

Query: 53  TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              +     AI  +P  ++A+        + E  + A VAL++   L P
Sbjct: 82  PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 10/78 (12%), Positives = 22/78 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     + +E+ PN+ +     A +     +  +A       I+  P        K 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 78  TACMKLEEYETAKVALEK 95
            +         + V    
Sbjct: 175 GSPGLTRRMSKSPVDSSV 192

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           + + A +     I+ +P    L  ++  +    +  +++  D++    ++    +A  + 
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207

Query: 77  ------------ATACMKLEEYETAKVALEKGASLAPGD 103
                               E+  A  A     ++ P D
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 2   ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVAD 58
           +  L ++  ++ +D    E   +LY +A   + +    +L             F  A+  
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            N A+ + P     + R        +  E A  A  +   + PG  R
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A + Y++A+EI P       +   + I L  + EAV++   A+ L+           
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322

Query: 78  TA 79
            A
Sbjct: 323 PA 324

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 51  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 111 NAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 28/153 (18%)

Query: 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSV-SIDVPGEEAYHFQPRLFGKIIPAKCRY 277
            Q+ ++V +TV      AK+++V    Q L   S      E + F   L+GKI+      
Sbjct: 10  AQRSDKVYLTVALPD--AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYR-K 66

Query: 278 EVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKL 337
            V    +   + K E   W+ L  S+          P +               VDW+K 
Sbjct: 67  NVGLRNIIFSIQKEERSWWTRLLKSEE------KPAPYIK--------------VDWNKW 106

Query: 338 EAQVKKEEKEEKLDGDAALNKFFQEIYADADED 370
                 E++E   +  +     F    +++ +D
Sbjct: 107 ----CDEDEEVNSETASDDESAFVNQDSESSDD 135

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWR- 75
              A   ++++I    + A  +  R     + + +  A+ D   A+ +L  +    Y   
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

Query: 76  --------------KATACMKLEEYETAKVALEKGASLAPGDS 104
                          A    K EE++ A+  L    S+     
Sbjct: 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 20 LAYDL--YSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
          LA D   +  A++    +    + +  +       L+N TEA     R+I  +  ++ AY
Sbjct: 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74

Query: 74 WRKATACMKLEEYETAKVALEK 95
          +++     + E+Y+ A   L++
Sbjct: 75 FQRGMLYYQTEKYDLAIKDLKE 96

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     QA+ +     E+ +  A+  + +    EA+A   +A+E  P       R A
Sbjct: 134 RDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +A +   + E A  A         
Sbjct: 193 SALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A  L+ +A++ +P   E     A+  +KL     A+ +    +   P     Y   +
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80

Query: 78  TACMKLE-----------EYETAKVALEKGASLAPGD 103
            A + L              E A   L+    + P  
Sbjct: 81  EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  +   A  ++P  A L   R      L    +A A   +A+ LE +  +     A
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALA 158

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + +   + A     K    AP
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAP 182

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 18  FELAYDLYSQAIEISPNSAE-----------LFADRAQASIKLQNFTEAVADANRAIELE 66
              A +     +  +P               L+              +A++    A  + 
Sbjct: 55  VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           P  +  + ++      L E + A+ +L++  +L  
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 36/84 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D ++ A+ + PN   L+              EAVA   RA+EL+P   ++ +   
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  +  A     +  ++  
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQR 316

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 15/84 (17%), Positives = 26/84 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L+  A++  P   E +        + +    A++   R +EL+P    A    A
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A   L       P
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTP 163

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 15/99 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
             LA     + +E+ P++       A +        +A       +   P+ +       
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAP 101
                       R   + +    +   K        L P
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           F    +L+  A+ + P S   ++             + +AV     A+ + P+    + +
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
                    + E A  A  +   L PG  R
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y +A+E+ P       +   + I L    EAV     A+ ++                + 
Sbjct: 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI- 332

Query: 85  EYETAKVALEK 95
            + T ++AL  
Sbjct: 333 -WSTLRLALSM 342

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQAS---------------IKLQNFTEAVADANR 61
               A ++    +  +P  A L     + +               +    F E       
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206

Query: 62  AIELEPSMSKA--YWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+ L+P+                  EY+ A        S+ P D
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
             +  +    + + +       ++  N  +A     +A+E++PS + A+   A       
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 85  EYETAKVALEKGASLAPGDSR 105
           E + A     K  +    ++R
Sbjct: 86  EPKLADEEYRKALASDSRNAR 106

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 10/84 (11%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A + + +++ ++ N   +  + A    K + +  A    +   +     +++     
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E+ +TA     +   L P
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +E AY    +A + +  P  + +F +    S++++   +A     +++ L  +       
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180

Query: 76  KATACMKLEEYETAKVALEKGASLAP 101
            A    K  EY  A+   +  A    
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGG 206

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+EI P+SA+  A  A           A  +  +A+  +   ++      
Sbjct: 53  TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112

Query: 78  TACMKLEEYETAKVALEK 95
               + + YE A   L +
Sbjct: 113 GFLYEQKRYEEAYQRLLE 130

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118

Query: 78  TACMKL 83
            A  K 
Sbjct: 119 NAKQKQ 124

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P         AQ  +K  N + A+A     +E +P     Y+       +L+  + A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 92  ALEKGASLAP 101
              +G  +A 
Sbjct: 63  TYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
             A  L+ + +E  P+    +    +   +L    +A+    + IE+            
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82

Query: 77 -ATACMKLEEYE 87
             A +K E  E
Sbjct: 83 LQDAKLKAEGLE 94

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA----NRAIELEPSMSKAY 73
            + A D   QAI ++P++  L    A    K++   E   +       A+E  P ++   
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
              A    + +E + A   L+K     P ++
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSKA 72
           +  E A   + +A+E  P + E  +  A AS +L N+     A+    +AI L P     
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211

Query: 73  YWRKATACMKL----EEYETAKVALEKGASLAPGD 103
               A    K+    EE    +  +E+    APG 
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 18  FELAYDLYSQAIEISPNSAEL-------------------FADRAQASIKLQNFTEAVAD 58
            + A +L  +A+E  PN+A L                             L+    AVA 
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +A E   ++ +     A+     ++YE A+   +K  S      
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAY 73
           Y +    +  + +      S EL  +     +K        A     +A+E +P   +  
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175

Query: 74  WRKATACMKLEEYETAKVALE 94
              A A  +L+ +  ++ A++
Sbjct: 176 SGLAIASYRLDNWPPSQNAID 196

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 24/59 (40%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79
              L  +A+E +P   ++    A+   +     +A+    +A+E  P+ +  + +    
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA- 72
           + +    A     +A E + N   + +  A        + EA     +    E +     
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 73  --YWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKEF 113
             + R     + +++  + A     +G  +         +  + 
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
              +   + +A+     P       ++   S K   F  A A   R++  +P    A+  
Sbjct: 93  PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A   M   +   A    +K  S      
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A      A++  P +   +  RA+    L+   +A     +A+ ++P  ++      
Sbjct: 24  YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83

Query: 78  TA-CMKLEEYETAKVALEK 95
              C +L     +    +K
Sbjct: 84  WFLCGRLNRPAESMAYFDK 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 33/76 (43%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           E +   + +    A   ++ Q++ +A A    A++ +P    A+  +A     L+  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 90  KVALEKGASLAPGDSR 105
           + +  +  S+ P  + 
Sbjct: 62  QESFRQALSIKPDSAE 77

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA-YWRK 76
           F LA     +++   P     F + A+  +      +A     +       +        
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 L   + A    E  A L  
Sbjct: 189 WKIAKALGNAQAAY---EYEAQLQA 210

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 12/84 (14%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    +  P   E +        + +    A+   N A  L+P     +   A
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 93  VSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              + +KL N  EA        + EP   +A+        + E+   A +AL     L P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 102 GD 103
            D
Sbjct: 83  KD 84

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT----------EAVADANRAIEL 65
                A +L  + ++ SP      A++A   I   +                D    +  
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
             ++S  Y  KA + +   + + +  A+  G  L  
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 15  DDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
           +             + +    N + ++  +A +++      E+    N  I+LE S    
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312

Query: 73  YWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           Y               A  A     +L PG +
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 209 PARPKYRHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 267
           P+  KY   + Q+  E+ +         +  + +    + + V               L 
Sbjct: 2   PSEAKYT--WDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ----GEIVIDGELL 55

Query: 268 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVS 317
            ++  +   + +    V++ + K     W SL     +V  Q++     +
Sbjct: 56  HEVDVSSLWWVINGDVVDVNVTKKRNEWWDSLLVGSESVDVQKLAENKHA 105

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.8 bits (102), Expect = 9e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
          ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84

Query: 78 TACMKL 83
           A  K 
Sbjct: 85 NAKQKQ 90

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 18 FELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           E A     + ++  P    E +     A  KL ++ +A+ +   AIEL P       RK
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 3/96 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWR 75
            +LA     +  +   ++       A  S+    +   +A        +           
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR-FTNLI 110
           +A   M    +E A+  L++      G      NL+
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 23/124 (18%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIK 48
            A      A+   +   ++ A     +A+EIS               A   A  A+A   
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69

Query: 49  LQNFTEAVADANRAI-------ELEPSMSKAY----WRKATACMKLEEYETAKVALEKGA 97
           L++F EA+  A++A+       EL     K +    + +A A   L     A    +K  
Sbjct: 70  LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129

Query: 98  SLAP 101
            +  
Sbjct: 130 EMIE 133

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 21/109 (19%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELE 66
            FE          + +P  A+         ++L  F           EA+     A+ ++
Sbjct: 17  LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76

Query: 67  PSMSKAYWRKATACMKL-----------EEYETAKVALEKGASLAPGDS 104
           P   +A W    A                 ++ A    ++     P ++
Sbjct: 77  PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           A   Y +AI       + AE +         L  + +A A     ++  P+        A
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L  YE     L K  +    D
Sbjct: 69  MVLYNLGRYEQGVELLLKIIAETSDD 94

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 6/72 (8%), Positives = 25/72 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                +  +  IE  P + +++  R      L++ ++ +      +  +     A+  + 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 78  TACMKLEEYETA 89
               + + ++  
Sbjct: 208 WVIQEFKLWDNE 219

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 211 RPKYRHEFYQKPEEVVVTV-FAKGIP-AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 268
           R  Y   + Q   ++ V V   K +   K V+V      + V++     E    + +L  
Sbjct: 19  RENYT--WSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTH 76

Query: 269 KIIPAKCRYEVLSTK-VEIRLAKAEPIQWSSL 299
           KI      + +   K V + L+K     W+++
Sbjct: 77  KINTESSLWSLEPGKCVLVNLSKVGEYWWNAI 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.88
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.87
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.84
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.84
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.83
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.76
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
2jtt_C	35	Calcyclin-binding protein; S100A6, SIAH-1 interact	99.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.62
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.59
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.57
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.57
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.46
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.35
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.33
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.29
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.29
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.26
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.2
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.1
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.02
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.01
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.01
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.99
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.97
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.97
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.94
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.93
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.9
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.85
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.82
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.78
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.78
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.6
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.52
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.49
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.42
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.32
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.29
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.25
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.19
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.14
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.98
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.86
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.66
4fei_A	102	Heat shock protein-related protein; stress respons	97.64
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.61
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.46
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.34
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.31
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.27
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.26
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.23
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.21
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.17
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.07
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.98
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.89
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	96.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.77
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	96.68
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.63
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	96.45
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.38
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.14
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.67
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.61
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	95.6
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.97
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.86
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.86
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.72
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.12
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.87
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.64
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.25
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.88
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.47
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.8
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.44
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.0
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.56
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	84.81
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.22
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	83.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	82.88
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.15

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.88  E-value=5.7e-24  Score=183.33  Aligned_cols=105  Identities=25%  Similarity=0.356  Sum_probs=91.9

Q ss_pred             CccccccCCCeEEEEEEeCCCCCCceEEEEe-eeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCC
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  292 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  292 (414)
                      ++|+||||.+.|+|+|+++++  .+++|+|+ +++|+|++...+|..|.+.|+||++|+|+ |+|+|++++|+|+|+|++
T Consensus         5 P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K~e   81 (150)
T 2kmw_A            5 PEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQKEE   81 (150)
T ss_dssp             CCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEECC
T ss_pred             CcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEECC
Confidence            479999999999999999987  58999999 79999998766777899999999999999 999999999999999999


Q ss_pred             CCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 015029          293 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV  341 (414)
Q Consensus       293 ~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~  341 (414)
                      +.+|++|++...               +.++|.     ++|||||.+|.
T Consensus        82 ~~~W~rL~k~~~---------------K~~~~l-----k~Dwdkw~ded  110 (150)
T 2kmw_A           82 RSWWTRLLKSEE---------------KPAPYI-----KVDWNKWCDED  110 (150)
T ss_dssp             SSCCSCSBSCCS---------------SCCTTE-----EECSSSSCCSS
T ss_pred             CCcCcccccCCc---------------ccCccc-----cccchhcCCch
Confidence            999999997631               114454     77999998653

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.87  E-value=7.1e-23  Score=171.81  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  293 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  293 (414)
                      +|+||||.+.|+|+|+++++  +++.|+|++++|+|.+.+ .+|..|.+.++||++|+|++|+|++.+++|+|+|+|+++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (125)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECCC
Confidence            79999999999999999985  799999999999999875 567789999999999999999999999999999999986


Q ss_pred             -CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 015029          294 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  340 (414)
Q Consensus       294 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e  340 (414)
                       .+|++|++.+                .+++|.     ++|||||.++
T Consensus        83 ~~~W~rL~~~~----------------~K~~~l-----k~D~dkw~de  109 (125)
T 1ejf_A           83 GQSWPRLTKER----------------AKLNWL-----SVDFNNWKDW  109 (125)
T ss_dssp             TCCCSSSBSSC----------------CCCTTE-----EECTTTCCCC
T ss_pred             CCCCCceecCC----------------Cccccc-----cCChHHhCCc
Confidence             5999999763                223443     7799999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.86  E-value=8e-22  Score=156.57  Aligned_cols=91  Identities=77%  Similarity=1.247  Sum_probs=85.4

Q ss_pred             CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029          212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  291 (414)
Q Consensus       212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  291 (414)
                      +++||+||||.+.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|++++.+++|+|+|+|+
T Consensus         1 ~~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~   80 (92)
T 2xcm_C            1 AKYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA   80 (92)
T ss_dssp             CCSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred             CCccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence            36899999999999999999999999999999999999998876777899999999999999999999999999999999


Q ss_pred             CCCCCCccccC
Q 015029          292 EPIQWSSLEFS  302 (414)
Q Consensus       292 ~~~~W~~L~~~  302 (414)
                      ++++|++|+++
T Consensus        81 ~~~~W~~L~~~   91 (92)
T 2xcm_C           81 DIITWASLEHG   91 (92)
T ss_dssp             SSCCCSCSBTT
T ss_pred             CCCcchhcccC
Confidence            98999999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=6.6e-20  Score=153.59  Aligned_cols=113  Identities=26%  Similarity=0.441  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+.++++|+.++..|+|++|+..|+++|+++|.++.+|.++|.||+++|++++|+.+|++|+.++|.++.+|+++|.+|+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|+|++|+.+|+++++++|++..+...++.|.
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999998888764

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.84  E-value=1.8e-21  Score=164.23  Aligned_cols=91  Identities=26%  Similarity=0.485  Sum_probs=85.0

Q ss_pred             CCccccccC-CCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCC------------eeeecccccccccCCcceEEE
Q 015029          213 KYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE------------AYHFQPRLFGKIIPAKCRYEV  279 (414)
Q Consensus       213 ~~r~dW~Qt-~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~------------~y~~~~~L~~~I~p~~s~~~v  279 (414)
                      .+||+|||| .+.|+|+||++++.++++.|+|++++|+|.+...++.            .|.++++||++|+|++|+|+|
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v   98 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF   98 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEE
Confidence            679999999 9999999999999999999999999999998776554            799999999999999999999


Q ss_pred             eCcEEEEEEeeCCCCCCCccccCC
Q 015029          280 LSTKVEIRLAKAEPIQWSSLEFSK  303 (414)
Q Consensus       280 ~~~kiei~L~K~~~~~W~~L~~~~  303 (414)
                      .+++|||+|+|+++.+|++|++..
T Consensus        99 ~~~kIeI~L~K~e~~~W~~L~~~~  122 (134)
T 1wh0_A           99 TASRIDICLRKRQSQRWGGLEAPA  122 (134)
T ss_dssp             CSSEEEEEEEESSSCCCSCSBCCC
T ss_pred             eCCEEEEEEEECCCCccccccccC
Confidence            999999999999989999999764

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.9e-22  Score=169.83  Aligned_cols=104  Identities=19%  Similarity=0.290  Sum_probs=84.9

Q ss_pred             CccccccCCCe-------EEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC------CCeeeecccccccccCCcceEEEe
Q 015029          214 YRHEFYQKPEE-------VVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG------EEAYHFQPRLFGKIIPAKCRYEVL  280 (414)
Q Consensus       214 ~r~dW~Qt~~~-------V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~------~~~y~~~~~L~~~I~p~~s~~~v~  280 (414)
                      ++|+||||.+.       |+|+|+++++  .++.|+|++++|+|++...+      +..|.+.|+||++|+|++|+|++.
T Consensus         7 p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~   84 (134)
T 2cg9_X            7 PQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA   84 (134)
T ss_dssp             ----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC
T ss_pred             CCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC
Confidence            47999999988       9999999987  48999999999999876543      467999999999999999999999


Q ss_pred             CcE-EEEEEeeCC--CCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 015029          281 STK-VEIRLAKAE--PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  340 (414)
Q Consensus       281 ~~k-iei~L~K~~--~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e  340 (414)
                      +++ |+|+|+|++  ..+|++|++..                .+++|.     ++|||||.+|
T Consensus        85 ~~~~vei~L~K~~~~~~~W~rL~k~~----------------~K~~~l-----k~D~dkw~dE  126 (134)
T 2cg9_X           85 NGQHYFLKLYKKDLESEYWPRLTKEK----------------VKYPYI-----KTDFDKWVDA  126 (134)
T ss_dssp             CC--CEEEEEECSSSSCCCSCSSSSC----------------CCCSSE-----EECTTTCCCS
T ss_pred             CCEEEEEEEEECCCCCCCCCceecCC----------------CccCcc-----cCCchhcCCc
Confidence            999 999999998  47999999763                233343     7799999864

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=158.41  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             CCccccccCCCeEEEEEEeCCC---CCCceEEEEeeeEEEEEEEcCCCCeeeeccc-ccccccCCcceEEEeCcEEEEEE
Q 015029          213 KYRHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRL  288 (414)
Q Consensus       213 ~~r~dW~Qt~~~V~i~i~~k~~---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~-L~~~I~p~~s~~~v~~~kiei~L  288 (414)
                      -.||+||||.+.|+|+|+++++   .++++.|+|++++|+|.+...++..|.|+++ ||++|+|++|+|+|.+++|+|+|
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L   99 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILC   99 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEE
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEE
Confidence            3499999999999999999998   7899999999999999998777888999995 99999999999999999999999


Q ss_pred             eeCCCC-CCCccccC
Q 015029          289 AKAEPI-QWSSLEFS  302 (414)
Q Consensus       289 ~K~~~~-~W~~L~~~  302 (414)
                      +|++++ +|++|+..
T Consensus       100 ~K~~~~~~W~~L~~~  114 (127)
T 1x5m_A          100 RKKVENTRWDYLTQV  114 (127)
T ss_dssp             ECSSSSCCCSSSBHH
T ss_pred             EECCCCCCCCccccc
Confidence            999875 99999865

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.83  E-value=8.2e-21  Score=156.86  Aligned_cols=95  Identities=35%  Similarity=0.652  Sum_probs=87.0

Q ss_pred             CCCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEee
Q 015029          211 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  290 (414)
Q Consensus       211 ~~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  290 (414)
                      .+++||+|+||.+.|+|+|+++++.++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|.|
T Consensus         7 ~~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K   86 (114)
T 1rl1_A            7 QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK   86 (114)
T ss_dssp             -CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             CCCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEc
Confidence            45789999999999999999999999999999999999999887777889999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCc
Q 015029          291 AEPIQWSSLEFSKGA  305 (414)
Q Consensus       291 ~~~~~W~~L~~~~~~  305 (414)
                      +++++|++|++.+..
T Consensus        87 ~~~~~W~~L~~~~~~  101 (114)
T 1rl1_A           87 PEAVRWEKLEGQGDV  101 (114)
T ss_dssp             SSCCCCSSSBTTC--
T ss_pred             CCCCcCccccccCCc
Confidence            998999999987543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=1.1e-18  Score=151.63  Aligned_cols=117  Identities=20%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAE-----LFADRAQASIKLQNFTEAVADANRAIEL---   65 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-------~~~-----~~~~ra~~~~kl~~~~~Al~~~~~Ai~l---   65 (414)
                      ||..++..|+.++..|+|++|+..|++||+++|+       +..     +|.++|.|+.++|+|++|+.+|++||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4778999999999999999999999999999999       544     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           66 ----EPSMSKAY----WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        66 ----~p~~~~a~----~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                          +|++..+|    |++|.+|..+|+|++|+.+|+++++++|++..+...+..+++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                99999999    99999999999999999999999999999988777777766433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.76  E-value=1.2e-17  Score=144.73  Aligned_cols=117  Identities=20%  Similarity=0.266  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~------------------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai   63 (414)
                      +..+...|+.++..|+|++|+..|++||.+                  +|.+..+|+++|.||+++|+|++|+.+|++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHh
Q 015029           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-RFTNLIKEFVGLLM  118 (414)
Q Consensus        64 ~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~  118 (414)
                      .++|.++.+|+++|.+|+.+|+|++|+.+|++++.++|++. .+...+..+...+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 77888888885443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.8e-17  Score=135.89  Aligned_cols=113  Identities=32%  Similarity=0.458  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+..|.++|.++|+++.++.++|.+|+++|+|++|+.+|++++.++|.++.+++++|.+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLA------PGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~------p~~~~~~~~l~~~~  114 (414)
                      .+|+|++|+.+|++++.++      |.+..+...+..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            9999999999999999999      99999999998887

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.75  E-value=2.7e-18  Score=145.07  Aligned_cols=122  Identities=16%  Similarity=0.237  Sum_probs=74.4

Q ss_pred             CccccccCCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCC
Q 015029          214 YRHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  292 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  292 (414)
                      .+|.|+||.+.|+|+|++ ++++.+++.|+|++++|+|.+.   |.+ .+.++||++|+|++|+|++.+++|+|+|.|+.
T Consensus         5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~   80 (131)
T 2o30_A            5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---GEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKKR   80 (131)
T ss_dssp             CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---TEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred             CcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---CEe-eEccccccccccccCEEEEeCCEEEEEEEECC
Confidence            479999999999999997 6788899999999999999874   445 78889999999999999999999999999996


Q ss_pred             CCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHH
Q 015029          293 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTR  372 (414)
Q Consensus       293 ~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~e~~~~e~~e~~~~~~~~~~~f~~iY~~~d~d~k  372 (414)
                      ..+|++|.+.+.                          ++|..++..+        +  . ..|        .+.|+|||
T Consensus        81 ~~~W~~L~~~~~--------------------------~id~~k~~~e--------~--~-~~l--------~dld~e~~  115 (131)
T 2o30_A           81 NEWWDSLLVGSE--------------------------SVDVQKLAEN--------K--H-ADM--------SMLDAEAR  115 (131)
T ss_dssp             CCCCSCSBC-----------------------------------------------------------------------
T ss_pred             CCCCccccCCCC--------------------------CCCHhHcCcc--------c--c-ccc--------ccCCHHHH
Confidence            689999997531                          2344444321        0  0 113        44599999


Q ss_pred             HHHHhhhhhcCC
Q 015029          373 RAMKKSFVESNG  384 (414)
Q Consensus       373 ram~KS~~eS~g  384 (414)
                      +++.|.+.++.-
T Consensus       116 ~~v~k~~~d~~q  127 (131)
T 2o30_A          116 EVVEKMMHNTSG  127 (131)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=5.1e-17  Score=135.86  Aligned_cols=112  Identities=22%  Similarity=0.291  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-------~~a~~   74 (414)
                      |..+.+.|+.++..|+|++|+.+|++||+++|+++.+|.++|.+|+++|+|++|+.+|++|+.++|.+       ..+|+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999998864       46899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++|.++..+|+|++|+.+|++++.++|+ +.....+.+++
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le  126 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE  126 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence            9999999999999999999999999885 55555555543

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.71  E-value=3.8e-17  Score=136.69  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=82.0

Q ss_pred             CccccccCCCeEEEEEEeC-CC-CCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcE-EEEEEee
Q 015029          214 YRHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK  290 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K  290 (414)
                      .+|.|+||.+.|+|+|.++ ++ +.+++.|+|++++|+|.+...++..|.+.++||++|+|++|+|++.+++ |+|+|+|
T Consensus        20 ~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~K   99 (124)
T 1wgv_A           20 ENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSK   99 (124)
T ss_dssp             SSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECB
T ss_pred             CcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEEE
Confidence            4799999999999999986 66 7899999999999999987655666788999999999999999999987 9999999


Q ss_pred             CCCCCCCccccCCC
Q 015029          291 AEPIQWSSLEFSKG  304 (414)
Q Consensus       291 ~~~~~W~~L~~~~~  304 (414)
                      ++..+|++|.+.+.
T Consensus       100 ~~~~~W~~L~~~~~  113 (124)
T 1wgv_A          100 VGEYWWNAILEGEE  113 (124)
T ss_dssp             SSSCCCSCSBTTSC
T ss_pred             CCCCCCcCcccCCC
Confidence            98899999997654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=2.7e-16  Score=136.18  Aligned_cols=103  Identities=13%  Similarity=0.037  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.++..|..++..|+|++|+..|.+++.++|+++.+|+++|.+|..+|+|++|+.+|++|+.++|+++.+|+++|.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCH
Q 015029           82 KLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      .+|++++|+.+|++++.+.|+.+
T Consensus       116 ~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999765

>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}

Probab=99.70  E-value=2e-18  Score=108.14  Aligned_cols=32  Identities=34%  Similarity=0.688  Sum_probs=29.4

Q ss_pred             chHHHHHHHHHHhcCCCHHHHHHHHhhhhhcC
Q 015029          352 GDAALNKFFQEIYADADEDTRRAMKKSFVESN  383 (414)
Q Consensus       352 ~~~~~~~~f~~iY~~~d~d~kram~KS~~eS~  383 (414)
                      ++++||+|||+||++|||||||||||||+|||
T Consensus         4 p~~~l~~~fk~iY~~gddd~kram~KS~~eS~   35 (35)
T 2jtt_C            4 SSEGLMNVLKKIYEDGDDDMKRTINKAWVESR   35 (35)
T ss_dssp             -CCSHHHHHHHHHTTCCSSHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence            44579999999999999999999999999997

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.70  E-value=4.1e-16  Score=135.19  Aligned_cols=113  Identities=27%  Similarity=0.361  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+.+|.++|.++|+++.+++++|.+|+.+|+|++|+.+|++++.++|.+..+|+++|.+|+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSR--FTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~  114 (414)
                      .+|+|++|+.+|++++.++|++..  +...+..++
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999876  444555555

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.69  E-value=5e-16  Score=133.42  Aligned_cols=115  Identities=12%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|+|++|+..|.+++..+|+++.+++++|.+|..+|+|++|+.+|++++.++|+++.+++.+|.+|..
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +|++++|..+|++++.++|+++.......++...+
T Consensus       102 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  136 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELIANXPEFXELSTRVSSML  136 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence            99999999999999999999888777776666443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=6.2e-16  Score=131.16  Aligned_cols=115  Identities=11%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|+|++|+.+|.+++..+|+++.+++++|.+|..+|+|++|+.+|++++.++|.++.+++.+|.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +|++++|..+|++++.++|.++.......++...+
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999988777777766444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=4.8e-16  Score=133.69  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .++..|.+++..|+|++|+.+|.++|+++|+++.+|.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.+|+.+
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVA-LEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~-~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |++++|... ++++++++|+++.+...+.++.
T Consensus       113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            999887765 5899999999998877776655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.64  E-value=5.1e-15  Score=123.22  Aligned_cols=114  Identities=25%  Similarity=0.366  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|+|++|+..|.+++..+|+++.+++++|.+|+.+|+|++|+.+|++++.++|.++.+++.+|.+|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPG-----DSRFTNLIKEFVG  115 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~~  115 (414)
                      .+|++++|..+|++++.++|+     +..+...+..+..
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998     7777777777773

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=9.5e-15  Score=130.53  Aligned_cols=118  Identities=23%  Similarity=0.273  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----------------ELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~----------------~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      +..+...|..++..|+|++|+.+|.+++.+.|.++                .++.++|.+|+.+|+|++|+.+|++++.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +|.+..+++++|.+|+.+|+|++|+.+|++++.++|.+..+...+..+...++.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988855544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=1.5e-14  Score=141.20  Aligned_cols=122  Identities=18%  Similarity=0.269  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      +..+...|+.++..|+|++|+..|.+||.+.|++               ..+|+++|.||+++|+|++|+.+|++|+.++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4568899999999999999999999999999999               6999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      |.+..+++++|.+|+.+|+|++|+.+|++++.++|.+..+...++.+...++.....
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888666554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=2.5e-14  Score=114.60  Aligned_cols=113  Identities=26%  Similarity=0.435  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+..|.+++...|.++.++.++|.+|+.+|++++|+..+++++.++|.++.+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|++++|...|++++.++|.+..+...+..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999998888887765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=7.5e-15  Score=132.86  Aligned_cols=113  Identities=15%  Similarity=0.085  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----------------RAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~----------------ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      ++.+..+|..++..|+|++|+..|.+++..+|+++.+++.                +|.+|.++|+|++|+.+|++++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|+++.+++.+|.+|+.+|++++|+.+|++++.++|++..+...++.+.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888776

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.62  E-value=1.9e-15  Score=127.55  Aligned_cols=87  Identities=18%  Similarity=0.251  Sum_probs=77.7

Q ss_pred             CccccccCCCeEEEEEEeC-C--CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEe
Q 015029          214 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLA  289 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~  289 (414)
                      .+|.|+||.+.|+|+|.++ +  +..+++.|+|++++|+|.+.   |..+.+.++||++|+|++|+|++.++ .|+|+|.
T Consensus         8 ~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~   84 (131)
T 1wfi_A            8 PNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE   84 (131)
T ss_dssp             CSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEE
T ss_pred             CcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC---CceEEEecccccccccccCEEEEcCCCEEEEEEE
Confidence            3799999999999999987 4  78899999999999999875   44577888999999999999999997 5999999


Q ss_pred             eCCC-CCCCccccCC
Q 015029          290 KAEP-IQWSSLEFSK  303 (414)
Q Consensus       290 K~~~-~~W~~L~~~~  303 (414)
                      |+++ .+|++|.+.+
T Consensus        85 K~~~~~~W~~L~~~~   99 (131)
T 1wfi_A           85 KINKMEWWNRLVTSD   99 (131)
T ss_dssp             BSSSCCCCSCSBSSC
T ss_pred             ECCCCCCChhhhcCC
Confidence            9987 5999999764

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.62  E-value=8.9e-16  Score=133.23  Aligned_cols=86  Identities=23%  Similarity=0.367  Sum_probs=76.4

Q ss_pred             CCccccccCCCeEEEEEEeC-CCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcE-EEEEEee
Q 015029          213 KYRHEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK  290 (414)
Q Consensus       213 ~~r~dW~Qt~~~V~i~i~~k-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K  290 (414)
                      ..+|.|+||.+.|+|+|.++ ++...+|.|+|++++|+|.+.   |.. .+.++||++|+|++|+|++.+++ |+|+|.|
T Consensus        13 ~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---g~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K   88 (157)
T 2rh0_A           13 TPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---GRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTK   88 (157)
T ss_dssp             CSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---TEE-EEEEEBSSCBCGGGCEEEEECCCEEEEEEEB
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---CEE-EEeeccccccCccccEEEEcCCcEEEEEEEE
Confidence            35899999999999999986 677899999999999999875   334 48889999999999999999987 9999999


Q ss_pred             CCC---CCCCccccC
Q 015029          291 AEP---IQWSSLEFS  302 (414)
Q Consensus       291 ~~~---~~W~~L~~~  302 (414)
                      ++.   .+|++|.+.
T Consensus        89 ~~~~~~~~W~~L~k~  103 (157)
T 2rh0_A           89 TKRDAANCWTSLLES  103 (157)
T ss_dssp             SSCSTTCCCSEEETT
T ss_pred             cCCCcCCcChhhhcC
Confidence            975   799999965

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=4.4e-15  Score=122.98  Aligned_cols=102  Identities=12%  Similarity=0.008  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .++..|..++..|++++|+..|.++|..+|+++.+++.+|.+|..+|++++|+.+|++|+.++|++..+++.+|.+|..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHH
Q 015029           84 EEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      |++++|+..|+++++++|.+..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999997653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.61  E-value=9.5e-15  Score=148.62  Aligned_cols=120  Identities=21%  Similarity=0.258  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      +..+..+|+.++..|+|++|+..|.+||.++|.+               ..+|+++|.||+++++|++|+.+|++|+.++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4578899999999999999999999999999998               7999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      |.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++...
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988886665433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.60  E-value=2.2e-14  Score=118.11  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYW   74 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~   74 (414)
                      |++.++..|..++..|+|++|+..|.+++...|++.   .+++.+|.+|+.+|+|++|+..|++++.++|++   +.+++
T Consensus         1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            356688999999999999999999999999999998   899999999999999999999999999999998   89999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|.+|+.+|++++|...|++++...|++..+...+..+.
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999998777666655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=1.1e-13  Score=118.18  Aligned_cols=113  Identities=31%  Similarity=0.466  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+..|.+++..+|.+..++.++|.+|..+|+|++|+.++.+++.++|.++.+++.+|.+++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|++++|..+|++++.++|.+..+...+..+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999998877666664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=8.6e-14  Score=113.32  Aligned_cols=114  Identities=33%  Similarity=0.439  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|+|++|+.+|.+++...|+++.++..+|.+|..+|++++|+.++.+++.++|.+..+++.+|.+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      .+|++++|..+|++++.++|.+..+...+..+..
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            9999999999999999999999988888888773

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=2e-14  Score=118.02  Aligned_cols=113  Identities=28%  Similarity=0.421  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ...+...|..++..|+|++|+..|.+++..+|.+..++.++|.+|..++++++|+.+|++++.++|.+..+++.+|.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|++++|..+|++++.++|.+..+...+..+.
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  128 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM  128 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            999999999999999999999988888888776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=2.9e-14  Score=119.47  Aligned_cols=113  Identities=27%  Similarity=0.426  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +..+...|..++..|+|++|+.+|.+++...|++   ..++.++|.+|+.+++|++|+.+|++++.++|.+..+++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            5678899999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|+.+|++++|..+|++++.++|.+..+...+..+.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999888887765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.59  E-value=3.1e-14  Score=152.61  Aligned_cols=126  Identities=17%  Similarity=0.166  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+.+.|+++...|+|++|+.+|.+||+++|+++.+|.++|.+|.++|++++|+.+|++|++++|++..+|+++|.+|.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWN  127 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~  127 (414)
                      .+|++++|+.+|+++++++|++..+...++.+...+++-..+....
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~  134 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY  134 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888888888888888888888888876666555554433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=4.2e-14  Score=128.74  Aligned_cols=128  Identities=15%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+..|.++|..+|+++.++.++|.+|..+|++++|+..|++++.++|+++.+++.+|.++.
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hc-----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           82 KL-----------EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        82 ~l-----------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+           |++++|+..|++++.++|++..+...++.+...++..........+
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  143 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ  143 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99           9999999999999999999988888888877666555555444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.57  E-value=9.1e-14  Score=113.38  Aligned_cols=115  Identities=19%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-------~~a~~   74 (414)
                      ++.+...|..++..|+|++|+.+|.+++...|.++.++.++|.+|..+|++++|+.++++++.++|.+       ..+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999998876       89999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ++|.+|+.+|++++|..+|++++.+.| +......+..+...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 688888888877444

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.57  E-value=1e-14  Score=121.15  Aligned_cols=88  Identities=18%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             CccccccCCCeEEEEEEeC-C--CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEe
Q 015029          214 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLA  289 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~  289 (414)
                      .+|.|+||.+.|+|+|.++ +  +...++.|+|++++|+|.+.   |..|.+..+||++|+|++|+|++.+. +|+|+|.
T Consensus        17 ~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~   93 (121)
T 3qor_A           17 PNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIADGAVVTVHLE   93 (121)
T ss_dssp             SSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEET---TSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEE
T ss_pred             CCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEc---CcceEEeccccccccccccEEEEcCCCEEEEEEE
Confidence            4799999999999999876 4  67899999999999999875   34578889999999999999999986 9999999


Q ss_pred             eCCC-CCCCccccCCC
Q 015029          290 KAEP-IQWSSLEFSKG  304 (414)
Q Consensus       290 K~~~-~~W~~L~~~~~  304 (414)
                      |.+. .+|++|...+.
T Consensus        94 K~~~~~~W~~L~~~~~  109 (121)
T 3qor_A           94 KINKMEWWSRLVSSDP  109 (121)
T ss_dssp             BSSSSCCCSCSBTTSC
T ss_pred             ECCCCCCChhhhcCCC
Confidence            9977 69999987654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.56  E-value=3.1e-14  Score=140.95  Aligned_cols=118  Identities=23%  Similarity=0.406  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE----------------ISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~----------------~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      +..+...|+.++..|+|++|+..|.+||+                .+|.+..+|.++|.||+++++|++|+.+|++|+.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999                77888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +|.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888855543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=1.6e-13  Score=124.79  Aligned_cols=105  Identities=16%  Similarity=0.318  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P-~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ++.++..|..++..|+|++|+..|.+++.++| .+..+++++|.+|+.+|+|++|+.+|++++.++|.+..+++.+|.+|
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            45789999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      ..+|+|++|+..|++++.++|.+..+
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            99999999999999999999999954

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=1.1e-13  Score=148.45  Aligned_cols=128  Identities=17%  Similarity=0.141  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+.+.|.++...|++++|+.+|.+||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..+|+++|.+|.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+|++++|+.+|+++++++|++..+...++.+...++.-..+.....+
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k  170 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK  170 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence            999999999999999999999999999999998777666555544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=8.8e-14  Score=138.39  Aligned_cols=127  Identities=13%  Similarity=0.010  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ++.+...|.++...|+|++|+..|+++|.++|++..+|++||.+|..+|+ +++|+.+|++|+.++|.+..+|+++|.+|
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            34577788888899999999999999999999999999999999999996 99999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      ..+|+|++|+.+|++++.++|++..+...++.+...++.-..+..+..
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~  224 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD  224 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            999999999999999999999998888888888866665554444333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=2.1e-13  Score=124.06  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-----------QNFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl-----------~~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      +..+...|.+++..|++++|+..|.+++.++|+++.++.++|.+|..+           |++++|+..|++++.++|++.
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            456788999999999999999999999999999999999999999999           999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      .+++.+|.+|..+|++++|+.+|+++++++ .+..+...++.+...++.......+....
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  177 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKA  177 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999 99999999998887666655555444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=4.5e-13  Score=117.40  Aligned_cols=124  Identities=14%  Similarity=0.157  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +.-+.+.|.+++..|+|++|+..|+++|+++|+++.++..+|.+|.++|++++|+..+.+++...|....+++.+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999888888888888877777777777


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLC  125 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  125 (414)
                      ..++++.|...+.+++.++|.+..+...++.+...++.-..+..
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  128 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE  128 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHH
Confidence            77777777777777777777777777777766655544444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=8.7e-15  Score=125.72  Aligned_cols=114  Identities=11%  Similarity=-0.087  Sum_probs=104.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~   87 (414)
                      .|..+...|++++|+..|.+++...|.++..++++|.+|+++|+|++|+.+|+++++++|+++.+|+.+|.+|..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            47777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           88 TAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      +|+.+|+++++++|++..+...++.+...++...
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999998885555433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=5.6e-13  Score=107.48  Aligned_cols=113  Identities=22%  Similarity=0.364  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+.+|.+++...|.+..++..+|.+|...|++++|+..+++++.++|.+..+++.+|.+|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|++++|...|++++.++|.+..+...+..+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999999999888887776

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=1.2e-13  Score=137.28  Aligned_cols=115  Identities=7%  Similarity=-0.023  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~-y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +..+..+|.++...|+ |++|+..|+++|.++|++..+|++||.+|..+|+|++|+.+|++|+.++|.+..+|+++|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            4568899999999997 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      ..+|+|++|+.+|++++.++|.+..+...++.+...
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888755

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=7.5e-14  Score=120.93  Aligned_cols=103  Identities=15%  Similarity=0.232  Sum_probs=94.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~----------~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      .-+.+.|++|+..|.++++++|+++.+|+++|.++..++++          ++|+.+|++||+++|++..+|+.+|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999875          59999999999999999999999999999


Q ss_pred             HcC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLE-----------EYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg-----------~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|           +|++|+.+|+++++++|++..+...+..+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            985           899999999999999999998877776655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.50  E-value=2.4e-14  Score=139.85  Aligned_cols=113  Identities=22%  Similarity=0.314  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----------------ELFADRAQASIKLQNFTEAVADANRAIE   64 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~-----------------~~~~~ra~~~~kl~~~~~Al~~~~~Ai~   64 (414)
                      +..++..|+.++..|+|++|+.+|.+||.+.|++.                 .+|+++|.||+++++|++|+.+|++|+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999887                 4899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        65 l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++|.+..+|+++|.+|+.+|+|++|+.+|++++.++|++..+...+..+.
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888888775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=4.6e-14  Score=115.44  Aligned_cols=101  Identities=17%  Similarity=0.114  Sum_probs=90.0

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 015029           14 IDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~---~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~   90 (414)
                      ..|+|++|+.+|.++|.+   +|+++.+++++|.+|+.+|+|++|+.+|++++.++|+++.+++.+|.+|+.+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           91 VALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ..|++++.+.|.++.+......+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999998765544433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.49  E-value=2.3e-13  Score=129.17  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|+.++..|+|++|+.+|.++|..+|+++.++.++|.+|+++|+|++|+.+|++|+.++|.+..+++++|.+|+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC
Q 015029           82 KLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+|+|++|...|++++.++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=8.3e-13  Score=119.95  Aligned_cols=116  Identities=14%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-------KAYWR   75 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-------~a~~~   75 (414)
                      ..+...|.+++..|+|++|+.+|.+++..+|+++.++..+|.+|..+|++++|+.+|++++.++|.++       .+|+.
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  122 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK  122 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            34667999999999999999999999999999999999999999999999999999999999999998       67999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHh
Q 015029           76 KATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKEFVGLLM  118 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~  118 (414)
                      +|.+++.+|+|++|+.+|+++++++|+  +..+...++.+...++
T Consensus       123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A          123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  8888888887774443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=2.7e-13  Score=107.59  Aligned_cols=100  Identities=17%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACM   81 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~   81 (414)
                      .+...|..++..|+|++|+.+|.+++...|.+..++.++|.+|+.+|++++|+.++++++.++|.  +..+++.+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             Hc-CChHHHHHHHHHHHHhCCCC
Q 015029           82 KL-EEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        82 ~l-g~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+ |++++|..+|++++...|.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHhCCHHHHHHHHHHHhhcccCC
Confidence            99 99999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=3.6e-12  Score=111.56  Aligned_cols=128  Identities=20%  Similarity=0.109  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|.+++..|++++|+..+.+++...|+++.++..+|.++...++++.|+..+.+++.++|.+..+++.+|.+|+
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+|+|++|+.+|+++++++|.+..+...++.+...++....+.....+
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999999999999999998776665555544433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.46  E-value=1.6e-12  Score=117.49  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=90.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL----   83 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l----   83 (414)
                      .|.+++..|+|++|+..|.++|+++|+++.+++++|.+|+.+|++++|+.+|++++.++|+++.+++.+|.+|+.+    
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999998888888777544    


Q ss_pred             -------------------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           84 -------------------------------EEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        84 -------------------------------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                                                     |+|++|+.+|+++++++|+.. ....+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i  199 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence                                           457778888888888888643 33334433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.46  E-value=5.6e-12  Score=102.51  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.+...|..++..|++++|+.+|.+++...|.+..++..+|.++...|++++|+..+++++.++|....+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +|++++|...|++++.+.|.+..+...+..+....+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  118 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD  118 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence            9999999999999999999998877777776643333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=1.9e-12  Score=112.91  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~-~~kl~~~--~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      ..+...|.+++..|+|++|+.+|.+++.++|+++.++..+|.+ |+..|++  ++|+..|++++.++|.+..+++.+|.+
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4567888899999999999999999999999999999999998 7788888  999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |+.+|+|++|...|++++.++|.+......+..+.
T Consensus       125 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          125 AFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            99999999999999999999988765544444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.44  E-value=1.5e-13  Score=118.72  Aligned_cols=112  Identities=9%  Similarity=-0.156  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        21 Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      +-..|.+++.++|+++.+++++|.+|+++|+|++|+..|++++.++|.++.+|+.+|.+|+.+|+|++|+.+|++++.++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33557888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029          101 PGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus       101 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      |+++.+...++.|...+++...+.........
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999877776666655555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.4e-11  Score=106.16  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..++..|++++|+.+|.+++...|.+..++..+|.+|...|++++|+..+++++.++|.+..+++.+|.++..+|
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      ++++|...|++++.++|.+..+...++.+..
T Consensus       125 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A          125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            5555555555555555555555444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.42  E-value=4.2e-12  Score=113.55  Aligned_cols=124  Identities=17%  Similarity=0.103  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..++..|..++..|+|++|+..|.+++  .| ++.+++++|.+|..+|+|++|+.+|++++.++|.+..+++.+|.+|+.
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            457889999999999999999999996  33 788999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDS----------------RFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +|+|++|+.+|++++.+.|.+.                .+...++.+...++....+......
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999999998877                7777888887666555555444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=3.3e-12  Score=116.55  Aligned_cols=111  Identities=32%  Similarity=0.462  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|+|++|+..|.+++..+|.++.++.++|.+|..+|++++|+.+|++++.++|.++.+++.+|.+|..
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLA------PGDSRFTNLIKEF  113 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~------p~~~~~~~~l~~~  113 (414)
                      +|++++|...|+++++++      |.+..+...+.+|
T Consensus       220 ~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            888888888888888888      7777776666554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=3.1e-12  Score=118.91  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~---~~~a~~~   75 (414)
                      ++.++..|..++..|+|++|+..|.+++...|++   +.+++.+|.+|+++|+|++|+..|++++.+.|.   ...+++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            4678999999999999999999999999999999   899999999999999999999999999999885   4789999


Q ss_pred             HHHHHHH--------cCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           76 KATACMK--------LEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        76 ~g~~~~~--------lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      +|.+++.        +|++++|+..|++++.++|++..+.
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            9999999        9999999999999999999987655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=1.3e-11  Score=114.11  Aligned_cols=112  Identities=21%  Similarity=0.093  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+.+|.+++..+|+++.++..+|.+|..+|++++|+.+|++++.++|.+..+++.+|.+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      .+|++++|...|++++.++|.+.....++..+
T Consensus       123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999998766655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=3.8e-12  Score=113.81  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----------   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-----------   70 (414)
                      +..+...|.+++..|+|++|+.+|.+++..+|+++.+++++|.+|+.+|+|++|+.+|++++.+.|.+.           
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            346788999999999999999999999999999999999999999999999999999999999888766           


Q ss_pred             -----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           71 -----KAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        71 -----~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                           .+++.+|.+|+.+|++++|..+|++++.++|.+.
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                 9999999999999999999999999999999764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=4.8e-13  Score=136.83  Aligned_cols=112  Identities=30%  Similarity=0.463  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.+...|..++..|+|++|+.+|++||+++|+++.++.++|.+|+++|+|++|+.+|++|++++|.++.+++++|.+|..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|+|++|..+|+++++++|++..+...++.+.
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999998888888774

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.40  E-value=2.2e-12  Score=107.45  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 015029           27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (414)
Q Consensus        27 ~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~  106 (414)
                      ++..++|+.+..+.++|.+|++.|+|++|+.+|++|+.++|.++.+|+.+|.+|+.+|++++|+.+|+++++++|.+..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHH
Q 015029          107 TNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ...++.+...++.-..+.....+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999777665555544444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=4.8e-13  Score=106.73  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------SKAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~~a~~~   75 (414)
                      ++.+...|..++..|+|++|+..|.+++.++|+++.++.++|.+|+.+|+|++|+.+|++++.++|.+      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998      999999


Q ss_pred             HHHHHHHcCChHHHHHHHHH
Q 015029           76 KATACMKLEEYETAKVALEK   95 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~   95 (414)
                      +|.++..+|+++.|+..|++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999998888766553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.38  E-value=1.3e-11  Score=128.20  Aligned_cols=130  Identities=14%  Similarity=0.037  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|+|++|+.+|.++++++|++..++.++|.+|..+|++++|+.+|++++.++|.+..+++.+|.+|.
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhhhhhhhhHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL---MQNAVYLCWNYELL  131 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~  131 (414)
                      .+|++++|...|++++.++|++..+...+..+...+   +....+.....+..
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999888776   55555544444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.5e-11  Score=112.16  Aligned_cols=128  Identities=15%  Similarity=0.107  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE--------------------------ISPNSAELFADRAQASIKLQNFTEA   55 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~--------------------------~~P~~~~~~~~ra~~~~kl~~~~~A   55 (414)
                      +..+...|..++..|++++|+..|.+++.                          .+|.++.++..+|.+|+.+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            45678899999999999999999999999                          6677788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           56 VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        56 l~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +..|++++.++|.++.+++.+|.+|..+|++++|+..|++++.++|.+..+...++.+...++....+..+...
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888666665555544443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=1.4e-11  Score=106.07  Aligned_cols=128  Identities=13%  Similarity=-0.009  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+..|.+++...|.+..++..+|.+|...|++++|+..+++++.++|.+..+++.+|.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ..|++++|...|++++.++|.+..+...++.+....+.-.....+..+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999998888888877655555544444444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=3.4e-11  Score=109.06  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++...|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+++.
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLC  125 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~  125 (414)
                      +|++++|...|++++.++|.+..+...++.+....+.-..+..
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888888888877777777666655554444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.36  E-value=1.6e-11  Score=116.72  Aligned_cols=122  Identities=15%  Similarity=0.059  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH------------------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD------------------------   58 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~------------------------   58 (414)
                      +.+...|..++..|++++|+..|.++|..+|+++.+++.+|.+|+.+|++++|+..                        
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            45788999999999999999999999999999999999999999999999887544                        


Q ss_pred             ----------HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhhhh
Q 015029           59 ----------ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        59 ----------~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~~~~  124 (414)
                                +++++.++|++..+++.+|.+|...|++++|+..|.+++.++|++  ..+...+..+...++......
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence                      555577788899999999999999999999999999999999987  777777887776665544433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=5e-11  Score=107.90  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|+|++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..|++++.++|.+..+++.+|.++..
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            34556666666666777777767666666666666666666666666777777777777666666666666666766666


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +|++++|...|++++.++|.+..+...++.+....+.
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  140 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ  140 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            7777777766666666666666665555555544433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.35  E-value=1.6e-11  Score=118.55  Aligned_cols=120  Identities=17%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+.+|.+++..+|+++.++.++|.+|..+|++++|+..|++++.++|.+..+++.+|.+|..
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHhhhhh
Q 015029           83 LEEYETAKVALEKGASLAPGD-----------SRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~-----------~~~~~~l~~~~~~~~~~~~  122 (414)
                      +|++++|...|++++.++|.+           ..+...++.+...++....
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            888888888888888887776           5666666666655544333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.35  E-value=2.8e-12  Score=109.86  Aligned_cols=112  Identities=14%  Similarity=0.023  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        22 i~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      -..|.+++.++|++..+++++|.+++..|+|++|+..|.+++.++|.++.+|+.+|.+|+.+|+|++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 015029          102 GDSRFTNLIKEFVGLLMQNAVYLCWNYELLRR  133 (414)
Q Consensus       102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  133 (414)
                      ++..+...++.+...++....+..+.......
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999997777776666655554433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=3.8e-12  Score=135.75  Aligned_cols=121  Identities=9%  Similarity=-0.121  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +.+...|..++..|+|++|+..|+++++.+|+++.+++++|.+|+.+|+|++|+.+|++|++++|++..+++.+|.+|..
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      +|+|++ +.+|+++++++|++..+...++.+...++....+.
T Consensus       514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            999999 99999999999999999999988886665554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=2.3e-11  Score=116.07  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+..|.+++..+|+++.+++.+|.+|+.+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAP---GDSRFTNLIKE  112 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p---~~~~~~~~l~~  112 (414)
                      .+|++++|...|++++.++|   .+..+...+..
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            99999999999999999999   77777766643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=3.2e-11  Score=115.11  Aligned_cols=114  Identities=20%  Similarity=0.202  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ....|..++..|++++|+..|.+++...|++.    .++..+|.+|..+|++++|+.+|++++.++|.++.+++.+|.+|
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45669999999999999999999999999987    45778999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      ..+|++++|..+|+++++++|++..+...+.++...++
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998885544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.34  E-value=9.1e-12  Score=127.03  Aligned_cols=115  Identities=16%  Similarity=0.061  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y-~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +..+...|..++..|+| ++|+.+|.++|+++|+++.+++++|.+|+.+|++++|+.+|++|+.++|+ ..+++.+|.+|
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            46688999999999999 99999999999999999999999999999999999999999999999998 79999999999


Q ss_pred             HHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           81 MKL---------EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        81 ~~l---------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ..+         |+|++|+.+|++++.++|++..+...++.+...+
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999         9999999999999999999999888888877554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.34  E-value=5.6e-11  Score=105.96  Aligned_cols=124  Identities=11%  Similarity=-0.020  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++...|++..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+|+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             c-CChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           83 L-EEYETAKVALEKGAS--LAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        83 l-g~y~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      + |++++|...|++++.  ..|.+..+...++.+....+.-..+..+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  135 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY  135 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8 888888888888888  5555566666666666554444444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.34  E-value=2.3e-11  Score=110.91  Aligned_cols=108  Identities=17%  Similarity=0.129  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR   75 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~   75 (414)
                      ++.++..|..++..|+|++|+..|.+++...|.+   ..+++.+|.+|+++|+|++|+..|++++.++|.+.   .+++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            5678999999999999999999999999999887   47899999999999999999999999999999875   48999


Q ss_pred             HHHHHHH------------------cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           76 KATACMK------------------LEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        76 ~g~~~~~------------------lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      +|.+++.                  +|++++|+..|++++...|++..+...
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a  135 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA  135 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999987                  578999999999999999998765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.34  E-value=1e-11  Score=126.72  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh
Q 015029            3 TDLEKKAKEAFID---------DYFELAYDLYSQAIEISPNSAELFADRAQASIKL--------QNFTEAVADANRAIEL   65 (414)
Q Consensus         3 e~~~~~g~~~~~~---------g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl--------~~~~~Al~~~~~Ai~l   65 (414)
                      ..+...|.+++..         |+|++|+.+|.++++++|+++.+++++|.+|..+        |+|++|+.+|++|+.+
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            4567788899998         9999999999999999999999999999999999        9999999999999999


Q ss_pred             CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           66 EP---SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        66 ~p---~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      +|   .++.+|+.+|.+|+.+|+|++|..+|++++.++|++..+...+..+...++.-.
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99   999999999999999999999999999999999999998888888876655433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.33  E-value=2.6e-11  Score=112.08  Aligned_cols=118  Identities=16%  Similarity=0.108  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|.+++..|++++|+.+|.+++..+|.++.++.++|.+|..+|++++|+.+|++++.++|.++.+++.+|..++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            34567888888888888888888888888888888888888888888888888888888888888888888888885555


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ..+++++|..+|+++++++|.+......++.+...++.
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            56688888888888888888888877777777766544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.32  E-value=3.6e-11  Score=111.63  Aligned_cols=116  Identities=18%  Similarity=0.077  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCCH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIK--------LQNFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~k--------l~~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      ++.++..|.+++..|+|++|+..|.++|...|++   +.+++.+|.+|+.        +|++++|+..|++++.+.|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            4567899999999999999999999999998855   6789999999999        9999999999999999999876


Q ss_pred             HHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 015029           71 KAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLIKEFVGLL  117 (414)
Q Consensus        71 ~a~-----------------~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~~  117 (414)
                      .+.                 +.+|.+|+.+|+|++|+..|++++...|++   ..+...++.+...+
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            555                 999999999999999999999999999984   45777777777655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=8.3e-12  Score=108.79  Aligned_cols=123  Identities=11%  Similarity=0.107  Sum_probs=105.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh-
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-CMKLEEY-   86 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~-~~~lg~y-   86 (414)
                      +..++..|+|++|+..|.+++..+|+++.++..+|.+|+.+|+|++|+..|++++.++|.++.+++.+|.+ ++..|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999 8899999 


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015029           87 -ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus        87 -~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  131 (414)
                       ++|..+|++++.++|.+..+...++.+...++....+..+.....
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             999999999999999999999888888866665555554444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=2.1e-11  Score=118.26  Aligned_cols=127  Identities=16%  Similarity=0.075  Sum_probs=109.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      ...|..+...|++++|+.+|.+++..+|+  ++.++.++|.+|..+|++++|+..|++++.++|.++.+++.+|.+|..+
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG  260 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34588999999999999999999999999  8999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      |++++|+..|++++.++|.+..+...++.+...++.-..+.....+...
T Consensus       261 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988777766666555554433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=2.4e-11  Score=117.81  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+..|.+++...|+++.++.++|.+|..+|++++|+..|++++.++|.+..+++.+|.+|.
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCC
Q 015029           82 KLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+|++++|..+|++++.++|.+
T Consensus       293 ~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          293 NLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999874

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=4.5e-11  Score=109.36  Aligned_cols=120  Identities=18%  Similarity=0.065  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++..+|.+..++..+|.+|...|++++|+..+++++.++|.+..+++.+|.+|+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            44566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhh
Q 015029           83 LEEYETAKVALEKGAS--LAPGDSRFTNLIKEFVGLLMQNAV  122 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~  122 (414)
                      +|++++|...|++++.  ..|.+..+...++.+....+.-..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence            7777777777777776  566666655556555544443333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=6.8e-11  Score=108.13  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--LEPSMSKAYWRKATAC   80 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~--l~p~~~~a~~~~g~~~   80 (414)
                      ..+...|..++..|++++|+.+|.+++...|.+..++..+|.+|..+|++++|+..|++++.  ..|....+++.+|.+|
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999  8888899999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +.+|++++|...|++++.++|.+..+...++.+...++....+..+...
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  200 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL  200 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999998888888877666555554444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.31  E-value=9.4e-11  Score=104.45  Aligned_cols=129  Identities=16%  Similarity=0.043  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIE--LEPSMSKAYWRKATA   79 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl-~~~~~Al~~~~~Ai~--l~p~~~~a~~~~g~~   79 (414)
                      ..+...|..++..|++++|+.+|.+++...|.+..++..+|.+|..+ |++++|+..+++++.  ..|....+++.+|.+
T Consensus        43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  122 (225)
T 2vq2_A           43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC  122 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999 999999999999999  667778999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  131 (414)
                      +..+|++++|+..|++++.++|.+..+...++.+....+....+........
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  174 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ  174 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999888888888766665555554444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=3.1e-11  Score=97.70  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        19 ~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      ..|+..|.+++..+|+++.+++++|.+|+.+|++++|+..|++++.++|.+..+++.+|.+|..+|++++|...|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC
Q 015029           99 LAPG  102 (414)
Q Consensus        99 l~p~  102 (414)
                      ++|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            9874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=3.9e-11  Score=104.95  Aligned_cols=117  Identities=13%  Similarity=0.081  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN-----------------------   60 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~-----------------------   60 (414)
                      .+...|..++..|++++|+..|.+++..+|+++.+++.+|.+|+.+|++++|+..++                       
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            467788889999999999999999999999999999999999998888877765544                       


Q ss_pred             -----------HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 015029           61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKEFVGLLMQN  120 (414)
Q Consensus        61 -----------~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~  120 (414)
                                 +++.++|+++.+++.+|.++..+|++++|...|++++.++|..  ..+...+..+...++..
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence                       4455566677777777777777777777777777777777754  44666666666444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=5.7e-11  Score=116.26  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      ...|..++..|++++|+..+..++..+|.++.++..+|.+|.+.|++++|+..|++++.++|++..+++.+|.++..+|+
T Consensus        37 ~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  116 (388)
T 1w3b_A           37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD  116 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +++|...|++++.++|++..+...++.+.
T Consensus       117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A          117 MEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             SSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            55555555555555554444444444333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=7.7e-11  Score=95.61  Aligned_cols=101  Identities=24%  Similarity=0.396  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+.+|.+++...|.+..++..+|.+|...|++++|+..+++++.+.|.+..+++.+|.++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 015029           83 LEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      +|++++|...|.+++.++|.+
T Consensus       116 ~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          116 QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HccHHHHHHHHHHHHccCCCC
Confidence            999999999999999998863

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.29  E-value=1.9e-11  Score=113.08  Aligned_cols=117  Identities=13%  Similarity=0.039  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--S-MSKAYWRKATA   79 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p--~-~~~a~~~~g~~   79 (414)
                      +.+...|..++..|+|++|+..|.++++.+|+++.++..+|.+|+.+|+|++|+..|++++...+  . ...+++.+|.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            45678899999999999999999999999999988899999999999999999999999998332  2 25668999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +..+|++++|+.+|++++.++|.+..+...++.+...++.
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  123 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN  123 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence            9999999999999999999999888888888877754443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.29  E-value=1.3e-11  Score=104.32  Aligned_cols=110  Identities=14%  Similarity=0.014  Sum_probs=96.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        23 ~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      ..|.+++..+|++...++.+|.+++..|+|++|+..|++++.++|.++.+|+.+|.+|+.+|+|++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029          103 DSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus       103 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      ++.+...++.+...++....+..+......
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999998777776666655554433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.28  E-value=7e-12  Score=133.67  Aligned_cols=112  Identities=10%  Similarity=-0.055  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|.+++..|+|++|+..|++||+++|+++.+++++|.+|.++|+|++ +.+|++|++++|.+..+|+++|.+|.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|++++|+.+|+++++++|.+..+...++.+.
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999988887777665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=1e-10  Score=114.48  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..+...|++++|+.+|.+++.++|++..++.++|.++...|++++|+..|.+++.++|.+..+++.+|.+|..+|
T Consensus       172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  251 (388)
T 1w3b_A          172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence            44455555555555555555555555555555555555555555555666666666666666655566666666666666


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ++++|+..|++++.++|.+..+...++.+....+.
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  286 (388)
T 1w3b_A          252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence            66666666666666666655555555554433333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.1e-10  Score=110.45  Aligned_cols=126  Identities=11%  Similarity=-0.037  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         4 ~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      .+...|..++..| ++++|+.+|.+++..+|+++.++..+|.+|..+|++++|+..|++++.+.|.+..+++.+|.+|..
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            4556677777777 777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +|++++|...|++++.++|.+..+...++.+....+.-..+..+..+
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  218 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD  218 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            77777777777777777777776666666666544444444433333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.27  E-value=1.5e-10  Score=115.04  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|..++..|+|++|+.+|++++..+|+++.+++.+|.+|+.+|++++|+.+|++++.++|.+..+++.+|.+|.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCH---HHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDS---RFTNLI  110 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l  110 (414)
                      .+|++++|...|++++.++|.+.   .+...+
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  137 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL  137 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999987   555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.27  E-value=8.4e-11  Score=107.13  Aligned_cols=122  Identities=12%  Similarity=0.044  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH------------------ccCHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIK------------------LQNFTEAVADANR   61 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~---~~~~~ra~~~~k------------------l~~~~~Al~~~~~   61 (414)
                      ..+...|.+++..|+|++|+..|++++...|++.   .+++.+|.+|+.                  +|++++|+..|++
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            4678899999999999999999999999999986   489999999987                  5789999999999


Q ss_pred             HHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhh
Q 015029           62 AIELEPSMSKAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        62 Ai~l~p~~~~a~-----------------~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~  121 (414)
                      ++...|++..++                 +.+|.+|+..|+|.+|+..|+++++..|+++   .+...++.+...++...
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            999999876543                 6789999999999999999999999999987   45666777775555544


Q ss_pred             hhh
Q 015029          122 VYL  124 (414)
Q Consensus       122 ~~~  124 (414)
                      .+.
T Consensus       202 ~A~  204 (225)
T 2yhc_A          202 QAE  204 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.26  E-value=1.3e-10  Score=109.64  Aligned_cols=115  Identities=15%  Similarity=0.264  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+.+|.+++..+|+++.++..+|.+|..+|++++|+..|++++.++|.+..+++.+|.+|..
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34566788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGASLAPG------------DSRFTNLIKEFVGLL  117 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~~  117 (414)
                      +|++++|...|++++.++|.            +..+...++.+...+
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            88888888888888888887            566666666666433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.26  E-value=6.3e-11  Score=119.36  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ++.+...|+.++..|+|++|+..|++++..+| ++.++.++|.+|+++|++++|+.+|++++.++|.+..+++.+|.+|+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999 68999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      .+|++++|...|++++.++|.+..
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999986543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.24  E-value=1.9e-10  Score=108.73  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..++..|+|++|+.+|.+++..+|.+..++..++.+++.+|++++|+..+.+++.++|.++.+++.+|.+++.+|
T Consensus        25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (330)
T 3hym_B           25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG  104 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence            56788888999999999999999999999988888888899999999999999999999999998899999999999999


Q ss_pred             -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           85 -EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        85 -~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                       ++++|..+|++++.++|.+..+...++.+....+.-..+......
T Consensus       105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B          105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence             899999999999999998888888888777665555444444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1.5e-10  Score=88.64  Aligned_cols=79  Identities=24%  Similarity=0.350  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      +...|..++..|+|++|+.+|.+++..+|+++.++.++|.+|+.+|++++|+..|++++.++|.+..+++.+|.++..+
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            4445555555555555555555555555555555555555555555555555555555555555555555555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.23  E-value=2.1e-10  Score=113.89  Aligned_cols=115  Identities=21%  Similarity=0.210  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +...|..++..|++++|+.+|.+++...|+++    .++..+|.+|.++|++++|+..+++++.++|.+..+++.+|.+|
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35569999999999999999999999999984    48899999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ..+|++++|..+|+++++++|++..+...+..+...++.
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999888755433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.21  E-value=2.8e-11  Score=94.98  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~-~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+.+|..++..|+|++|+..|.+++..+|+++. +++++|.+|+.+|++++|+.+|++++.++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            467899999999999999999999999999998 99999999999999999999999999999998888754        


Q ss_pred             CChHHHHHHHHHHHHhCCCC
Q 015029           84 EEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~  103 (414)
                      +.+.+|..+|+++..++|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            56677788887777777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.21  E-value=3.1e-10  Score=109.39  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=110.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      .|.. +..|++++|+..|.+++..+|.  ++.++.++|.+|..+|++++|+..|++++.++|.++.+++.+|.++..+|+
T Consensus       188 ~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  266 (368)
T 1fch_A          188 LGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ  266 (368)
T ss_dssp             THHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC
Confidence            3444 4899999999999999999999  899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015029           86 YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus        86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  131 (414)
                      +++|+..|++++.++|.+..+...++.+...++.-..+..+.....
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999988877766666555544433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.20  E-value=3e-10  Score=108.21  Aligned_cols=119  Identities=10%  Similarity=-0.010  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA--SIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~--~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +.+...|.++...|++++|+..|.+++..+|++....+..+.+  +...|++++|+..|++++..+|.++.+++.+|.++
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4566778888888888888888888888888876444333322  22347888888888888888888888888888888


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNA  121 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~  121 (414)
                      ..+|++++|...|++++.++|+++.+...+..+...++...
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            88888888888888888888888888877777776655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.19  E-value=6.9e-10  Score=105.71  Aligned_cols=100  Identities=8%  Similarity=0.057  Sum_probs=85.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHH
Q 015029           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET-AKVA   92 (414)
Q Consensus        14 ~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~-A~~~   92 (414)
                      ..|++++|+..|++++...|+++.++.++|.+|+++|++++|+.++++++.++|+++.+++++|.++..+|++.+ |..+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            348899999999999999999999999999999999999999999999999999999999999999999999876 4678


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH
Q 015029           93 LEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        93 ~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      +++++.++|+++.+.....+.
T Consensus       258 ~~~~~~~~P~~~~~~d~~~~~  278 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKEYRAKE  278 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHH
Confidence            888999999998776654443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.19  E-value=2.2e-10  Score=98.76  Aligned_cols=104  Identities=12%  Similarity=0.032  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        32 ~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      .+.++..++.+|.+|+..|+|++|+.+|++++.++|.+..+|+.+|.+|+.+|+|++|+.+|++++.++|.+..+...++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhHHHHHhhhc
Q 015029          112 EFVGLLMQNAVYLCWNYELLRRVG  135 (414)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      .+...++.-..+..+..+......
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCC
Confidence            999777776666666555544433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=2.6e-10  Score=93.49  Aligned_cols=97  Identities=18%  Similarity=0.053  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        33 P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      |..+..+..+|.++++.|+|++|+..|++++.++|.++.+++.+|.+|+.+|+|++|+.+|++++.++|.+..+...++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhHHH
Q 015029          113 FVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       113 ~~~~~~~~~~~~~~~~~  129 (414)
                      +...++.-..+.....+
T Consensus        81 ~~~~~~~~~~A~~~~~~   97 (126)
T 3upv_A           81 AQIAVKEYASALETLDA   97 (126)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHH
Confidence            88776665555544444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=3e-10  Score=115.39  Aligned_cols=125  Identities=14%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..++..|++++|+.+|.+++..+|+++.++..+|.+|..+|++++|+..|++++.++|.+..+++.+|.+|+.+
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34556666666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      |++++|...|++++.++|.+..+...++.+....+....+..+..
T Consensus       358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            777777777777777777777666666666655544444444333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=2.1e-10  Score=111.67  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+.+.|.+++..|+|++|+.+|+++|.++|+++.+|+++|.+|+.+|+|++|+.+|++|+.++|.+..+++.+|.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHH-HHHHHHH
Q 015029           82 KLEEYETAK-VALEKGA   97 (414)
Q Consensus        82 ~lg~y~~A~-~~~~~a~   97 (414)
                      .+|++++|. ..|.+++
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999994 4565554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.17  E-value=1.6e-10  Score=106.66  Aligned_cols=118  Identities=13%  Similarity=-0.011  Sum_probs=104.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029           13 FIDDYFELAYDLYSQAIEIS----PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~----P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      ...|+|++|+..|.+++...    |.++.+++.+|.+|..+|++++|+..|++++.++|.++.+++.+|.+|..+|+|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34688999999999999974    45688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           89 AKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      |+.+|++++.++|.+..+...++.+...++.-..+.....+.
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  137 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  137 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999998888888886666555555444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.17  E-value=3e-10  Score=107.19  Aligned_cols=107  Identities=11%  Similarity=0.017  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .++..|..++..|+|++|+..|.+++..+|++..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+|..+
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      |++++|...|++++.++|.+......+
T Consensus       103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            999999999999999999876544433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.15  E-value=5.4e-10  Score=94.99  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA--C   80 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~--~   80 (414)
                      ..+...|.+++..|+|++|+..|.+++..+|.++.+++++|.+|..+|++++|+.+|++++.++|.+..++..++.+  +
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  127 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  127 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999888555554  8


Q ss_pred             HHcCChHHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGAS   98 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~   98 (414)
                      ..+|++++|+..+.++..
T Consensus       128 ~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          128 VKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHH
Confidence            889999999999987654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=2.6e-10  Score=104.97  Aligned_cols=130  Identities=20%  Similarity=0.145  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~--------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------   65 (414)
                      +..+...|..++..|+|++|+.+|.+++.+.        |....++.++|.+|..+|++++|+..|.+++.+        
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            3457889999999999999999999999883        556789999999999999999999999999998        


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKEFVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  131 (414)
                      +|....+++.+|.+|+.+|++++|...|++++.+        .|....+...++.+...++.-..+..+..+..
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667889999999999999999999999999998        55555667777777766666555555554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=2.6e-10  Score=118.28  Aligned_cols=115  Identities=14%  Similarity=0.055  Sum_probs=87.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE   94 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~   94 (414)
                      .|++++|+..|.++++.+|++..++.++|.+|+.+|+|++|+..|+++++++|.+..+++.+|.+|..+|++++|..+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           95 KGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        95 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +++.++|++..+...++.+...++....+..+..+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999998888776665555544433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=3.4e-10  Score=107.45  Aligned_cols=103  Identities=16%  Similarity=0.010  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC-----
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEPSM-----   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl-~~~~~Al~~~~~Ai~l~p~~-----   69 (414)
                      +..+.+.|.++...|+|++|+.+|.+||.+.+..      +.++.++|.+|... |++++|+.+|++|+.+.|..     
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            3456677888888888888888888888876543      45777888888884 88888888888888877643     


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           70 -SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        70 -~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                       ..++.++|.+|..+|+|++|+.+|++++.+.|.+.
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence             45677888888888888888888888888877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=4.4e-10  Score=89.16  Aligned_cols=72  Identities=19%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        31 ~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .+|+++.+++++|.+|+.+|+|++|+..|+++++++|.++.+|+.+|.+|..+|++++|+..|++++.+.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            479999999999999999999999999999999999999999999999999999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.13  E-value=2.4e-10  Score=94.93  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-------HH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-------FT  107 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~-------~~  107 (414)
                      .+.++.++|.+|++.|+|++|+.+|++|+.++|.++.+|+++|.+|+.+|+|++|+.+|+++++++|.+..       +.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            35688899999999999999999999999999999999999999999999999999999999999887643       33


Q ss_pred             HHHHHHHHHHhhhhhhhhh
Q 015029          108 NLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~  126 (414)
                      ..++.+...++.-..+..+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            3344555444443333333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.11  E-value=1e-09  Score=111.37  Aligned_cols=128  Identities=18%  Similarity=0.174  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+...|..++..|++++|+..|.+++..+|+ ..++..+|.+|..+|++++|+..|++++.++|.++.+++.+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            345788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      .+|+|++|...|++++.++|.+..+...++.+....+.-..+.......
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999988888888886666555555444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.11  E-value=1.8e-09  Score=89.19  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=88.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 015029           30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (414)
Q Consensus        30 ~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~  109 (414)
                      ..+|.++..++.+|.+++..|+|++|+..|.+++.++|.++.+++.+|.+++.+|+|++|+.+|++++.++|.+..+...
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHH
Q 015029          110 IKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ++.+...++.-..+......
T Consensus        83 l~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHH
Confidence            99988666665555444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=2e-09  Score=107.84  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------   66 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~---------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-------   66 (414)
                      ..+...|.+++..|+|++|+.+|.+|+++         +|.....|.++|.+|..+|+|++|+.++++++.+.       
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            34567899999999999999999999987         67778899999999999999999999999999884       


Q ss_pred             -CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           67 -PSMSKAYWRKATACMKLE--EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        67 -p~~~~a~~~~g~~~~~lg--~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                       +..+.++..+|.++..+|  +|++|+.+|++++.++|+++.+...+..+...+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence             356889999998887765  699999999999999999999888877765444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.10  E-value=2.2e-10  Score=108.73  Aligned_cols=104  Identities=17%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---
Q 015029            2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---   71 (414)
Q Consensus         2 Ae~~~~~g~~~~~~-g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~---   71 (414)
                      +..+...|..+... |+|++|+.+|.+||.+.|.+      ..++.++|.+|..+|+|++|+.+|++++.+.|.+..   
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            34677889999996 99999999999999997754      568999999999999999999999999999987543   


Q ss_pred             ----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           72 ----AYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        72 ----a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                          +++++|.++..+|++++|+.+|++++.++|....
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                6899999999999999999999999999998654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=1e-09  Score=83.90  Aligned_cols=81  Identities=25%  Similarity=0.364  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEF  113 (414)
Q Consensus        34 ~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~  113 (414)
                      .++.+++.+|.+|+..++|++|+..|++++.++|.+..+++.+|.+++.+|++++|..+|++++.++|.+..+...++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             H
Q 015029          114 V  114 (414)
Q Consensus       114 ~  114 (414)
                      .
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.09  E-value=1.6e-09  Score=89.06  Aligned_cols=91  Identities=18%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      .++.+|.++++.|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.++|++..+...++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999888666


Q ss_pred             hhhhhhhhhHH
Q 015029          118 MQNAVYLCWNY  128 (414)
Q Consensus       118 ~~~~~~~~~~~  128 (414)
                      +....+..+..
T Consensus        99 g~~~~A~~~~~  109 (121)
T 1hxi_A           99 HNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            66555444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.08  E-value=1e-09  Score=87.01  Aligned_cols=80  Identities=23%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTN  108 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~  108 (414)
                      ++.++.++|.+++..|+|++|+..|++++.++|.++.+++.+|.+|+.+|+|++|+.+|++++.++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998      55555


Q ss_pred             HHHHHH
Q 015029          109 LIKEFV  114 (414)
Q Consensus       109 ~l~~~~  114 (414)
                      .++.+.
T Consensus        83 ~~~~~~   88 (111)
T 2l6j_A           83 RLELAQ   88 (111)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555555

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.07  E-value=3.6e-09  Score=109.04  Aligned_cols=126  Identities=12%  Similarity=-0.013  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..++..|++++|+.+|.+++...|.+..++..++.+|.+.|++++|+..|++++.++|.+..+++.+|.+|...
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            45667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      |++++|...|++++.++|.+......+..+....+.-..+.....+
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  500 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN  500 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            8888888888888888888887777777766555544444444333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.06  E-value=4e-09  Score=108.70  Aligned_cols=95  Identities=13%  Similarity=0.014  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      +...|..+...|++++|+.+|.+++...|++..++..+|.+|.+.|++++|+..|++++.++|.++.+|+.+|.+|...|
T Consensus       410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            34444445555555555555555555555444445555555555555555555555555555544445555555555555


Q ss_pred             ChHHHHHHHHHHHHh
Q 015029           85 EYETAKVALEKGASL   99 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l   99 (414)
                      ++++|...|++++.+
T Consensus       490 ~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          490 DMQTAINHFQNALLL  504 (597)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555544444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.06  E-value=7.2e-10  Score=87.39  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHH
Q 015029           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTN  108 (414)
Q Consensus        31 ~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~--~~~~~~  108 (414)
                      ++|+++.+++.+|.+++..|++++|+..|++++.++|.+..+++.+|.+++.+|+|++|..+|++++.++|.  +..+..
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888999999999999999999999999999999999999999999999999999999999999999999  988888


Q ss_pred             HHHHHHHHH
Q 015029          109 LIKEFVGLL  117 (414)
Q Consensus       109 ~l~~~~~~~  117 (414)
                      .++.+...+
T Consensus        81 ~l~~~~~~~   89 (112)
T 2kck_A           81 AKADALRYI   89 (112)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHH
Confidence            888877433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=1.6e-09  Score=106.42  Aligned_cols=118  Identities=10%  Similarity=0.135  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSK   71 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l------~p~~~~   71 (414)
                      +..+...|..++..|+|++|+.+|.+++...|++.    .++..+|.+|+.+|++++|+.+|++++.+      .+....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            35678899999999999999999999999999986    58999999999999999999999999998      566788


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASL------APGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~~  119 (414)
                      +++.+|.+|+.+|+|++|..+|++++.+      .+....+...++.+...++.
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999999999988      33344455556666655544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=8.7e-10  Score=101.39  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------   65 (414)
                      +..+...|.+++..|++++|+.+|.+++..        +|....++.++|.+|..+|++++|+..|++++.+        
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345778999999999999999999999998        4667889999999999999999999999999999        


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      .|....+++.+|.+|..+|++++|...|++++.+
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6777889999999999999999999999999987

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.05  E-value=1.8e-09  Score=90.34  Aligned_cols=125  Identities=15%  Similarity=0.129  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------   69 (414)
                      +..+...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+..+++++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4567889999999999999999999999985532      2589999999999999999999999999986542      


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHhhhhhhhhh
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPG--DS----RFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~--~~----~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      ..+++.+|.+++.+|++++|...|++++.+.+.  +.    .+...++.+...++....+..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence            678999999999999999999999999887432  22    2344455555444443333333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=8.2e-09  Score=95.95  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      ++.+...|..++..|++++|+.+|.++++  |+++.+++++|.+|..    .+++++|+..|++++.++  ++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            45678889999999999999999999988  7788899999999999    999999999999999886  788999999


Q ss_pred             HHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           78 TACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      .+|..    .+++++|+.+|++++.++  +..+...++.+...
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            99999    999999999999998874  67777777777644

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.04  E-value=2.1e-09  Score=86.85  Aligned_cols=84  Identities=24%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|.+++..|++++|+..|.+++...|+++.+++.+|.+|..+|++++|+.++++++.++|.+..+++.+|.++..
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCh
Q 015029           83 LEEY   86 (414)
Q Consensus        83 lg~y   86 (414)
                      +|++
T Consensus       127 ~~~~  130 (131)
T 2vyi_A          127 LREA  130 (131)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9986

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.3e-09  Score=109.79  Aligned_cols=120  Identities=22%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK------AYWRKAT   78 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~------a~~~~g~   78 (414)
                      +...|..++..|++++|+..|.+++...|+++.++..+|.+|..+|++++|+..+++++.++|.+..      +++.+|.
T Consensus       341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  420 (514)
T 2gw1_A          341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT  420 (514)
T ss_dssp             HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666666666555433      6666666


Q ss_pred             HHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhh
Q 015029           79 ACMK---LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYL  124 (414)
Q Consensus        79 ~~~~---lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~  124 (414)
                      +++.   +|++++|...|++++.++|.+..+...++.+....+....+.
T Consensus       421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  469 (514)
T 2gw1_A          421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI  469 (514)
T ss_dssp             HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence            6666   666666666666666666666655555555554444433333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.02  E-value=3.9e-09  Score=100.74  Aligned_cols=121  Identities=10%  Similarity=0.013  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~-~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      ..+...|..+...|++++|+..|+++|.+.|.++. +|.++|.++.+.|++++|+..|++|+.++|....+|+..+...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34667888888899999999999999999888876 88999999989999999999999999988888777776666644


Q ss_pred             H-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhh
Q 015029           82 K-LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        82 ~-lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~  123 (414)
                      . +|++++|..+|++++.++|++..+...+..+...++....+
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  222 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            3 78999999999999999998887777766666444433333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.01  E-value=1.6e-09  Score=96.28  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|.+++..|+|++|+.+|.+++.++|+++.+++++|.+|+.+|+|++|+.+|++++.++|.+..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHH-HHHHHHH
Q 015029           83 LEEYETAK-VALEKGA   97 (414)
Q Consensus        83 lg~y~~A~-~~~~~a~   97 (414)
                      ++++.++. ..|...+
T Consensus       169 ~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            99998877 4444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.01  E-value=1.1e-09  Score=111.13  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +..+.+.|.+++..|+|++|+.+|++||.++|+++.+|++||.+|+.+++|++|+.+|++|++++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHH
Q 015029           82 KLEEYETAKVA   92 (414)
Q Consensus        82 ~lg~y~~A~~~   92 (414)
                      .++++.+|...
T Consensus       397 ~~~~~~~a~~~  407 (457)
T 1kt0_A          397 KAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=3.8e-09  Score=99.11  Aligned_cols=118  Identities=10%  Similarity=0.149  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSK   71 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l------~p~~~~   71 (414)
                      +..+...|..++..|+|++|+.+|.+++...|.+    ..++..+|.+|+.+|++++|+..+++++.+      .+....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            3567889999999999999999999999999998    478899999999999999999999999988      345678


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhh
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKEFVGLLMQ  119 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~  119 (414)
                      +++.+|.+|+.+|+|++|...|++++.+.+...      .+...++.+...++.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999999998865432      144445555544443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.00  E-value=2.4e-09  Score=104.91  Aligned_cols=128  Identities=14%  Similarity=0.106  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-----   69 (414)
                      +..+...|..++..|++++|+.+|.+|+.+.+.       .+.++.++|.+|..+|+|++|+..|++|+.+.+..     
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  222 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL  222 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence            456788899999999999999999999987433       25688999999999999999999999999885532     


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           70 -SKAYWRKATACMKLEEYETAKVALEKGASL-----A-PGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        70 -~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l-----~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                       ..+++++|.+|..+|+|++|+.+|++++.+     + |....+...++.+...++.-..+..+..+
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             358899999999999999999999999984     5 65666677777777666665555554444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.99  E-value=3.5e-09  Score=102.97  Aligned_cols=118  Identities=10%  Similarity=0.145  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSK   71 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~------p~~~~   71 (414)
                      +..+...|..++..|+|++|+.+|++++...|.+    ..++..+|.+|+.+|+|++|+..|++++.+.      +....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            5678899999999999999999999999999998    4689999999999999999999999999883      44578


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~  119 (414)
                      +++.+|.+|..+|++++|..+|++++.+.+..      ..+...++.+....+.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999887642      2244455555544444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.98  E-value=1.8e-09  Score=92.76  Aligned_cols=86  Identities=13%  Similarity=0.051  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM   81 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~-~a~~~~g~~~~   81 (414)
                      ..+.+.|.+++..|+|++|+..|+++|.++|+++.+|+.+|.+|+.+|+|++|+.+|++++.++|.+. .+...++.+..
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999998 66777777776


Q ss_pred             HcCChHH
Q 015029           82 KLEEYET   88 (414)
Q Consensus        82 ~lg~y~~   88 (414)
                      .++++.+
T Consensus       144 ~~~~~~~  150 (162)
T 3rkv_A          144 RRAEKKA  150 (162)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            6655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.97  E-value=5.5e-09  Score=90.43  Aligned_cols=94  Identities=18%  Similarity=0.091  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSK-----AYWRKATACMKLEEYETAKVALEKGASL----   99 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-------~~~-----a~~~~g~~~~~lg~y~~A~~~~~~a~~l----   99 (414)
                      +..+.++|.+++++|+|++|+.+|++||+++|.       +..     +|+++|.++..+|+|++|+.+|.+++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            457899999999999999999999999999998       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHhhhhhhhhhHHH
Q 015029          100 ---APGDSRFT----NLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       100 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                         +|++..+.    ..++.+...++.-..+.....+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence               99998888    7788877666665555544333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=3.2e-09  Score=99.26  Aligned_cols=129  Identities=20%  Similarity=0.169  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--------   66 (414)
                      ..+...|..++..|++++|+.+|.+++..        .|....++.++|.+|..+|++++|+..|.+++.+.        
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999999999999999999988        35567899999999999999999999999999984        


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKEFVGLLMQNAVYLCWNYELL  131 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  131 (414)
                      +....+++.+|.+|..+|++++|+.+|++++.+        .|....+...++.+...++.-..+..+..+..
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            556789999999999999999999999999998        55555566667777766666555555544433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.97  E-value=3.9e-10  Score=109.81  Aligned_cols=102  Identities=11%  Similarity=-0.002  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM-K   82 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~-~   82 (414)
                      .+.+.|.+++..|+|++|+.+|+++|.++|++..+|+++|.+|+.+|+|++|+.+|++|+.++|.+..++..++.+.. .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999944 5


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      .+.++.+...|.+++.+.|.++.
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCC
Confidence            66788889999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=6.5e-09  Score=88.99  Aligned_cols=99  Identities=10%  Similarity=0.033  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHH
Q 015029           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELE-P-SMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        17 ~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~-p-~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      ....+.+.|.+.+..++.+..+.+++|.|+.+.+   ++++|+..++.+++.+ | ...+++|++|++|+++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456778899999989999999999999999988   7779999999999999 7 578999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +|+++++++|+|.++......++.
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999999888877773

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.97  E-value=3.3e-09  Score=86.35  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|.+++..|++++|+..|.+++..+|.++.+++++|.+|+.+|++++|+..|++++.++|.+..+++.++.+++.
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 015029           83 LEE   85 (414)
Q Consensus        83 lg~   85 (414)
                      +|+
T Consensus       131 ~~~  133 (133)
T 2lni_A          131 QYN  133 (133)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.96  E-value=5.6e-09  Score=84.75  Aligned_cols=83  Identities=11%  Similarity=-0.026  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|.+++..|+|++|+..|.++++++|+++.+++++|.+|..+|++++|+..+++++.+.|.++........+.+.
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998776544444444


Q ss_pred             cCC
Q 015029           83 LEE   85 (414)
Q Consensus        83 lg~   85 (414)
                      .+.
T Consensus       108 ~~~  110 (117)
T 3k9i_A          108 ADK  110 (117)
T ss_dssp             TTC
T ss_pred             HHH
Confidence            333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.94  E-value=7.7e-10  Score=112.97  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA--   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~--   79 (414)
                      +..+...|.+++..|+|++|+..|.+|++++|+++.+++++|.+|..+|+|++|+.+|++|++++|.+..+++.++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHcCChHHHHHHHH-----------HHHHhCCC
Q 015029           80 CMKLEEYETAKVALE-----------KGASLAPG  102 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~-----------~a~~l~p~  102 (414)
                      +..+|+|++|+..++           +++.++|+
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            899999999999999           77777665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=4.4e-09  Score=98.34  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l--------   65 (414)
                      ++.+...|..++..|+|++|+.+|.+++.+        .|....++..+|.+|..+|++++|+..+++++.+        
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999995        5667889999999999999999999999999998        


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHhhhhhhhhhHH
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA-----PGDS---RFTNLIKEFVGLLMQNAVYLCWNY  128 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~-----p~~~---~~~~~l~~~~~~~~~~~~~~~~~~  128 (414)
                      .+....+++.+|.+|..+|++++|..+|++++.+.     +.++   .+...++.+....+.-..+..+..
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35567899999999999999999999999999884     3333   344445555544444333333333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.93  E-value=2.4e-08  Score=94.37  Aligned_cols=119  Identities=10%  Similarity=-0.033  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCC----HH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI---ELEPSM----SK   71 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai---~l~p~~----~~   71 (414)
                      +...|..+...|+|++|+.+|.+|+...+..      ..++.++|.+|..+|+|++|+..|++|+   ...+..    ..
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~  197 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence            3456777788889999999999999875543      5688999999999999999999999999   445553    26


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhhh
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQNAVY  123 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~  123 (414)
                      +++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...++....+
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            88999999999999999999999998875321      44566677777666555555

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.93  E-value=5e-08  Score=90.57  Aligned_cols=107  Identities=11%  Similarity=0.098  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 015029            3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW   74 (414)
Q Consensus         3 e~~~~~g~~~~~----~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~   74 (414)
                      ..+...|..++.    .+++++|+.+|.++++..  ++.+++++|.+|..    .+++++|+..|++|+.++  ++.+++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~  114 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA  114 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence            456677888888    888888888888888875  67888888888888    888888888888888874  778888


Q ss_pred             HHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        75 ~~g~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      .+|.+|..    .+++++|+.+|++++.++  +......++.+..
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            88888888    888888888888888776  4555555665553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=5.2e-09  Score=92.00  Aligned_cols=126  Identities=13%  Similarity=-0.013  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC----C
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EP----S   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l---~p----~   68 (414)
                      +..+...|..++..|+|++|+.+|.+++.+      .+....++.++|.+|..+|++++|+..+.+++.+   .+    .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            356778999999999999999999999994      3445788999999999999999999999999998   33    2


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHhhhhhhhhhH
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSR----FTNLIKEFVGLLMQNAVYLCWN  127 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p--~~~~----~~~~l~~~~~~~~~~~~~~~~~  127 (414)
                      ...+++.+|.++..+|++++|...|++++.+.+  .+..    +...++.+...++.......+.
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  170 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW  170 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            456899999999999999999999999987643  2332    2244555554444444444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=9.6e-09  Score=80.20  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        39 ~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~-a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      .+++|.+++..|+|++|+..|++++.++|.+.. +++.+|.+|+.+|++++|+.+|++++.++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            467899999999999999999999999999999 999999999999999999999999999999998876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.92  E-value=2.9e-09  Score=100.80  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI---SPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~---~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~   70 (414)
                      .+...|.+++..|+|++|+.+|.+||..   .|.+    ..+++++|.+|.++|+|++|+..+++|+.+.+..      .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            4677888888888888888888888853   1122    4577888888888888888888888888876432      7


Q ss_pred             HHHHHHHHHHHHcCC-hHHHHHHHHHHHHh
Q 015029           71 KAYWRKATACMKLEE-YETAKVALEKGASL   99 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~-y~~A~~~~~~a~~l   99 (414)
                      .+|+++|.+|+.+|+ |++|..+|++++.+
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            788888888888884 68888888887754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.91  E-value=4.8e-09  Score=99.24  Aligned_cols=125  Identities=10%  Similarity=-0.072  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKA   72 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-------p~~~~a   72 (414)
                      ...|..++..++|++|+.+|.+|+.+.+..      ..++.++|.+|..+|+|++|+..|++|+.+.       +....+
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            347888888889999999999999964432      4479999999999999999999999999642       124568


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhh-hhhhhhHHHH
Q 015029           73 YWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQN-AVYLCWNYEL  130 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~-~~~~~~~~~~  130 (414)
                      ++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...+++. ..+..+..+.
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            9999999999999999999999999886543      55777788888666643 5555544443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=7.4e-09  Score=97.91  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAI---EISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL---~~~P~~~----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------   68 (414)
                      +..+...|..++..|+|++|+.+|.+|+   +..|++.    .+++++|.+|..+|+|++|+.++++|+.+.+.      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3467789999999999999999999999   5566643    68999999999999999999999999988643      


Q ss_pred             CHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhC
Q 015029           69 MSKAYWRKATACMKLEEYETA-KVALEKGASLA  100 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A-~~~~~~a~~l~  100 (414)
                      ...+|+++|.+|..+|++++| ..+|++++.+.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            378999999999999999999 78899988654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.91  E-value=1.7e-08  Score=96.13  Aligned_cols=106  Identities=13%  Similarity=0.092  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029            3 TDLEKKAKEAF-------IDDYF-------ELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (414)
Q Consensus         3 e~~~~~g~~~~-------~~g~y-------~~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p   67 (414)
                      +.+...|..+.       ..|++       ++|+..|.+||. +.|++..+|.++|.++..+|++++|+..|++++.++|
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  130 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED  130 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Confidence            34556666665       35885       999999999999 7999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           68 SMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        68 ~~~~-a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      .++. +|+.+|.++...|++++|...|+++++++|.+..+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  172 (308)
T 2ond_A          131 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9886 9999999999999999999999999999998765443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=2.9e-08  Score=78.59  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+..++.+|.+++..|++++|+..|++++.++|.++.+++.+|.+++.+|+|++|...|++++.++|.+..+...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHhhhhhhhhhH
Q 015029          115 GLLMQNAVYLCWN  127 (414)
Q Consensus       115 ~~~~~~~~~~~~~  127 (414)
                      ..++.-..+..+.
T Consensus        83 ~~~~~~~~A~~~~   95 (118)
T 1elw_A           83 EFLNRFEEAKRTY   95 (118)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHH
Confidence            6555544444333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.90  E-value=4.1e-09  Score=100.66  Aligned_cols=99  Identities=22%  Similarity=0.248  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~   70 (414)
                      ..+...|.++.. |+|++|+.+|.+||.+.+..      ..++.++|.+|..+|+|++|+.+|++++.+.+.+      .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            345566777766 77777777777777765543      4667777777777777777777777777775432      3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      .+++.+|.++..+|++++|..+|++++ ++|..
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            467777777777777777777777777 77754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=7.7e-09  Score=102.06  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+.+.|.+++..|+|++|+.+|++||+++|+++.+++++|.+|+.+++|++|+.+|++|++++|.+..++..++.++..
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHH
Q 015029           83 LEEYETAKVA   92 (414)
Q Consensus        83 lg~y~~A~~~   92 (414)
                      ++++++|...
T Consensus       354 ~~~~~~a~k~  363 (370)
T 1ihg_A          354 IKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999888653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=1.6e-08  Score=82.36  Aligned_cols=96  Identities=11%  Similarity=-0.055  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLI  110 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~---~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~---~~~~~~l  110 (414)
                      .+++.+|.+++..|+|++|+..|++++..+|.+.   .+++.+|.+++.+|+|++|+..|++++.++|++   ..+...+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999987   899999999999999999999999999999999   7888888


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHh
Q 015029          111 KEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      +.+...++....+..+......
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            8888766666666555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.89  E-value=7.3e-09  Score=81.98  Aligned_cols=84  Identities=18%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~   79 (414)
                      +..+...|.+++..|+|++|+..|.++++++|+++.+++++|.+|..+|++++|+..|++++.+.|.  +..+...+..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999764  44455555555


Q ss_pred             HHHcCC
Q 015029           80 CMKLEE   85 (414)
Q Consensus        80 ~~~lg~   85 (414)
                      +...+.
T Consensus        87 l~~~~~   92 (100)
T 3ma5_A           87 KLKAEG   92 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHccc
Confidence            544433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=1.4e-08  Score=99.45  Aligned_cols=132  Identities=14%  Similarity=0.010  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEP------S   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~-------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p------~   68 (414)
                      +..+...|..++..|+++.|+.+|.+|+.+.+.       .+.++.++|.+|..+|+|++|+..|.+|+.+.+      .
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            345667788888888888888888888876432       245777888888888888888888888887643      1


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRR  133 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  133 (414)
                      ...+++++|.+|..+|+|++|+.+|++++.     .+|....+...++.+...++....+..+..+....
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345777888888888888888888888887     56656666666777776666666665555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.89  E-value=1.1e-08  Score=85.54  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS------MS   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~   70 (414)
                      ..+...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+..+++++.+.+.      ..
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            457789999999999999999999999985543      678999999999999999999999999988432      36


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .+++.+|.+++.+|++++|...|++++.+...
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999877543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.88  E-value=4.9e-09  Score=102.66  Aligned_cols=125  Identities=16%  Similarity=0.079  Sum_probs=100.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEI---SPN---SAELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKA   72 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~---~P~---~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-------~~~a   72 (414)
                      +..|..++..|+|++|+.+|.+|+.+   .++   .+.++.++|.+|..+|++++|+..+.+|+.+.+.       ...+
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  186 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC  186 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            44899999999999999999999997   233   4689999999999999999999999999999543       3568


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           73 YWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      ++.+|.+|..+|+|++|..+|++++.+.+...      .+...++.+...++.-..+..+..+.
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999998865432      24555666665555555554444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=5.7e-08  Score=93.36  Aligned_cols=113  Identities=11%  Similarity=-0.051  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Q 015029            6 EKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATAC--   80 (414)
Q Consensus         6 ~~~g~~~~~~g~y-~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~--   80 (414)
                      ..........|.| ++|+.+++++|.++|++..++..|+.++..++  ++++++.+++.++.++|.+..+|+.++.++  
T Consensus        36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence            3444455556665 47788888888888888778888888877777  788888888888888887777777777777  


Q ss_pred             --HHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           81 --MKL---EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        81 --~~l---g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                        ..+   +++++++.++.+++.++|.|..+....+-+...++
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~  158 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD  158 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence              666   67777888888888888877776666655554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.88  E-value=2.7e-08  Score=99.55  Aligned_cols=112  Identities=14%  Similarity=0.056  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKA   72 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~a   72 (414)
                      ..+.+.|.+++..|+|++|+.+|.+++.+        .+..+.++.++|.++++++  +|++|+.+|++|+.++|+++.+
T Consensus        95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~  174 (472)
T 4g1t_A           95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF  174 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence            35678899999999999999999999987        3355789999999888764  6999999999999999999999


Q ss_pred             HHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           73 YWRKATACMK---LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        73 ~~~~g~~~~~---lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++.+|.+++.   .+++++|+..|++++.++|.+..+...++.+.
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            9999998665   46778999999999999999998777666544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.9e-08  Score=82.37  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=88.6

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        31 ~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      ..|.+...++.+|.+++..|+|++|+..|++++.++|.+   ..+++.+|.+|+.+|+|++|+.+|++++.++|.+..+.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457789999999999999999999999999999999987   89999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHH
Q 015029          108 NLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      ..++.+...++....+..+..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888886666655555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.87  E-value=3.3e-08  Score=78.93  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++...|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cC
Q 015029           83 LE   84 (414)
Q Consensus        83 lg   84 (414)
                      +|
T Consensus       124 ~g  125 (125)
T 1na0_A          124 QG  125 (125)
T ss_dssp             HC
T ss_pred             cc
Confidence            65

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.87  E-value=1.1e-08  Score=99.50  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~   70 (414)
                      ..+...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+.++++++.+.+..      .
T Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence            456788999999999999999999999986554      3489999999999999999999999999987765      7


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      .+++.+|.+|..+|++++|...|++++.+.+..      ..+...++.+...++....+..+..+.
T Consensus       268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            899999999999999999999999999886543      345556666666555555555554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.87  E-value=2.4e-08  Score=86.98  Aligned_cols=80  Identities=10%  Similarity=0.002  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        19 ~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~--~~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      ..|+..|.+++..+|+++.+++++|.+|..+|++++|+..|.+++.++|..  ..+++.+|.++..+|++++|..+|+++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            346777888888999999999999999999999999999999999999975  669999999999999999999999988


Q ss_pred             HH
Q 015029           97 AS   98 (414)
Q Consensus        97 ~~   98 (414)
                      +.
T Consensus       171 l~  172 (176)
T 2r5s_A          171 LY  172 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.86  E-value=2.3e-08  Score=104.19  Aligned_cols=115  Identities=8%  Similarity=0.002  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCH
Q 015029            3 TDLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~----------y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      ..+..+|.++...++          |++|+..|+++|+.+|.+..+|..|+.++.+++  +|++|+.+++++++++|.+.
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~  143 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF  143 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence            467788899988888          999999999999999999999999999999999  77999999999999999999


Q ss_pred             HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           71 KAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        71 ~a~~~~g~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      .||.+++.++..+| .+++|++++.++++++|.|..+...+..+...+
T Consensus       144 ~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999 999999999999999999999988888776443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.85  E-value=7.2e-08  Score=92.66  Aligned_cols=115  Identities=4%  Similarity=-0.184  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHH
Q 015029            3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQAS----IKL---QNFTEAVADANRAIELEPSMSKAY   73 (414)
Q Consensus         3 e~~~~~g~~~~~~g--~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~----~kl---~~~~~Al~~~~~Ai~l~p~~~~a~   73 (414)
                      ..+..+|.++...+  ++++|+..++.+|..+|.+..++..|+.++    ..+   +++++++.++++++.++|.+..+|
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45678889999888  999999999999999999999999999999    777   789999999999999999999999


Q ss_pred             HHHHHHHHHcCChH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           74 WRKATACMKLEEYE--TAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        74 ~~~g~~~~~lg~y~--~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      +.++.++..+|.++  +++.++.++++++|.|-.+......+...+
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999999999998  999999999999999988777766655333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.85  E-value=9.4e-09  Score=98.13  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------   69 (414)
                      +..+.+.|.++...|+|++|+.+|.+||.+.+.  +    ..++.++|.+|.. |+|++|+.+|++|+.+.+..      
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            345677888888889999999999999887432  2    4678889999988 99999999999999887643      


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      ..+++++|.+|..+|+|++|+.+|++++.+.+.+
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            5788899999999999999999999999886543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.85  E-value=2.1e-09  Score=105.52  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~   70 (414)
                      ..+...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|+.+|++++|+..+++++.+.+..      .
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  303 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA  303 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            456788999999999999999999999987653      2389999999999999999999999999998743      7


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+++.+|.+|..+|++++|..+|++++.+.+..      ..+...++.+...++....+..+..+
T Consensus       304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            899999999999999999999999999875532      22455566666555555555444444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.82  E-value=3.3e-08  Score=89.20  Aligned_cols=125  Identities=13%  Similarity=-0.005  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ----NFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~----~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      +..+...|..++..+++++|+.+|.++++.  .++.+++++|.+|.. +    ++++|+..|++|+.  +.++.+++.+|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            456788999999999999999999999886  578999999999988 7    89999999999965  57899999999


Q ss_pred             HHHHH----cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----HhhhhhhhhhHHHHH
Q 015029           78 TACMK----LEEYETAKVALEKGASLAPG--DSRFTNLIKEFVGL----LMQNAVYLCWNYELL  131 (414)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~  131 (414)
                      .+|..    .+++++|+.+|+++..+++.  +..+...++.+...    .........|.....
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            99998    89999999999999998884  46777778777744    223334444544433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.81  E-value=4.3e-08  Score=92.54  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        33 P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      |.++..+..+|.+|+..|+|++|+..|.+|+.++|.++.+++.+|.+|+.+|+|++|+..|++++.++|++..+...++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhhhhhhhHHH
Q 015029          113 FVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       113 ~~~~~~~~~~~~~~~~~  129 (414)
                      +...++.-..+..+...
T Consensus        81 ~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            88777665555544444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.81  E-value=1.3e-08  Score=87.87  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYF----------ELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y----------~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-----------~~~~Al~~~~   60 (414)
                      ++.+.+.|.++...+++          ++||..|.+||+++|+++.+|+++|.+|..+|           +|++|+.+|+
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            56788899999988775          59999999999999999999999999999885           8999999999


Q ss_pred             HHHHhCCCCH
Q 015029           61 RAIELEPSMS   70 (414)
Q Consensus        61 ~Ai~l~p~~~   70 (414)
                      +|++++|++.
T Consensus       116 kAl~l~P~~~  125 (158)
T 1zu2_A          116 QAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHhCCCCH
Confidence            9999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.80  E-value=1.7e-08  Score=94.72  Aligned_cols=127  Identities=14%  Similarity=0.108  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~   70 (414)
                      ..+...|..++..|++++|+.+|.+++...+..      ..++.++|.+|..+|++++|+..+++++.+.+..      .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            356788999999999999999999999885443      3489999999999999999999999999987654      7


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      .+++.+|.+|..+|++++|...|++++.+.+..      ..+...++.+...++....+..+..+
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            799999999999999999999999999876532      22444556665544444444444333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.80  E-value=3.6e-08  Score=96.46  Aligned_cols=101  Identities=15%  Similarity=0.037  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIE-----LEPSMS   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~-----l~p~~~   70 (414)
                      +..+...|.+++..|+|++|+.+|.+|+.+.+.      ...++.++|.+|..+|++++|+.++++|+.     .+|...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            445678999999999999999999999997431      256899999999999999999999999999     677789


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .+++.+|.+|+.+|++++|..+|++++.+.+.
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=6e-08  Score=76.29  Aligned_cols=74  Identities=16%  Similarity=0.031  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           32 SPNSAELFADRAQASIKLQN---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        32 ~P~~~~~~~~ra~~~~kl~~---~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      +|+++.++..+|.+++..++   ..+|...+++|+.++|+++.+++.+|.+++..|+|++|+..|++++..+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68999999999999987766   799999999999999999999999999999999999999999999999998543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=3e-08  Score=93.94  Aligned_cols=105  Identities=17%  Similarity=0.027  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELE--PS-MSKAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--p~-~~~a~~~~g~~   79 (414)
                      ++..|..++..++|++|+.+|+.++...+..  ..+++++|.++..+|++++|+.+|++++...  |. .+.+++++|.|
T Consensus       138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence            4556666666677777776666555432111  2466777777777777777777777776433  33 45577777777


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      +..+|+.++|...|++++..+|. ..+...|
T Consensus       218 L~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          218 RRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            77777777777777777777776 5444444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.78  E-value=7.9e-08  Score=98.33  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC-
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS-   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~-   68 (414)
                      ..+...+..+..+|+|++|+.+|.++|.+     .|++   +..+.++|.+|..+|+|++|+..+++++.+     .++ 
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556677788999999999999999987     3444   678999999999999999999999999977     444 


Q ss_pred             --CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHH
Q 015029           69 --MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKEFV  114 (414)
Q Consensus        69 --~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~  114 (414)
                        ....++++|.+|..+|+|++|...|++++.     +.|+++.....+..+.
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM  442 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence              456899999999999999999999999987     4788887666544433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.78  E-value=3.1e-08  Score=93.77  Aligned_cols=88  Identities=10%  Similarity=-0.010  Sum_probs=77.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHH
Q 015029           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYET   88 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~--~~a~~~~g~~~~~lg~y~~   88 (414)
                      .+...+++..|+..|.+++..+|+++.+++++|.+|...|++++|+..|.++++++|++  ..++.++|.++..+|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            34444444445666777788999999999999999999999999999999999999998  8999999999999999999


Q ss_pred             HHHHHHHHHH
Q 015029           89 AKVALEKGAS   98 (414)
Q Consensus        89 A~~~~~~a~~   98 (414)
                      |...|++++.
T Consensus       274 a~~~~r~al~  283 (287)
T 3qou_A          274 LASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.78  E-value=4.4e-08  Score=79.01  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD-------SRFT  107 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~-------~~~~  107 (414)
                      .+..++.+|.+++..|++++|+..|.+++.++|.++.+++.+|.+|+.+|+|++|..+|++++.+.|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998876       6667


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH
Q 015029          108 NLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      ..++.+...++.-..+..+...
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHH
Confidence            7777777555554444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.73  E-value=6.9e-08  Score=77.62  Aligned_cols=83  Identities=10%  Similarity=-0.040  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA   79 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~   79 (414)
                      +..+...|..++..|+|++|+..|.+++.++|++..+++++|.+|..+|++++|+..|++++.++|.  ...+...+...
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999999999874  44555555555


Q ss_pred             HHHcC
Q 015029           80 CMKLE   84 (414)
Q Consensus        80 ~~~lg   84 (414)
                      +..++
T Consensus        99 l~~l~  103 (115)
T 2kat_A           99 LRRLA  103 (115)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            54444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.73  E-value=1.7e-07  Score=97.61  Aligned_cols=111  Identities=10%  Similarity=0.071  Sum_probs=99.2

Q ss_pred             HHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            8 KAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQN----------FTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         8 ~g~~~~~~g~y-~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~----------~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      ........|+| ++|+..|+++|..+|++..+|..|+.++..+++          |++|+.++++++.++|.+..+|+.+
T Consensus        34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR  113 (567)
T 1dce_A           34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR  113 (567)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34445556666 578999999999999999999999999999998          9999999999999999999999999


Q ss_pred             HHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           77 ATACMKLE--EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        77 g~~~~~lg--~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      +.++..++  +|++|+.+|.++++++|.|..+....+-+...++
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            99999999  6799999999999999999988888777665443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=2.5e-07  Score=89.73  Aligned_cols=107  Identities=9%  Similarity=-0.023  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         4 ~~~~~g~~~~~~g--~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~-~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      .+..++.++...+  .+++++..++++|..+|.|..++.+|+.++..++. +++++.++.++|.++|.+..||.+++.++
T Consensus       110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3445555555555  36666666666666666666666666666666666 46666666666666666666666666666


Q ss_pred             HHc--------------CChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           81 MKL--------------EEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        81 ~~l--------------g~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ..+              +.++++++++.+++.++|+|..+...+
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~  233 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  233 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            665              346666666666666666666655433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.72  E-value=3.7e-07  Score=89.05  Aligned_cols=105  Identities=8%  Similarity=0.048  Sum_probs=95.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL-E-EYETAKV   91 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l-g-~y~~A~~   91 (414)
                      .+..++|+.+++++|.++|.+..++..|+.++..++ .+++++.+++.++.++|.+..+|+.++.++..+ + ++++++.
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            444578999999999999999999999999999999 599999999999999999999999999999998 8 9999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ++.+++.++|.|..+....+-+...++.
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~  174 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFST  174 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999887777666655443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.71  E-value=4e-07  Score=88.30  Aligned_cols=114  Identities=7%  Similarity=-0.011  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHH
Q 015029            4 DLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSK   71 (414)
Q Consensus         4 ~~~~~g~~~~~~g~----------y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~--~~~~Al~~~~~Ai~l~p~~~~   71 (414)
                      .+..++.++...+.          +.+++..++.+|..+|.+..+|..|+.++..++  .+++++.++++++.++|.+..
T Consensus        66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~  145 (331)
T 3dss_A           66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH  145 (331)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH
Confidence            45566666666554          789999999999999999999999999999999  499999999999999999999


Q ss_pred             HHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           72 AYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        72 a~~~~g~~~~~lg~-y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ||.+++.++..+|. ++++++++.+++.++|.|..+...+..+...+
T Consensus       146 AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          146 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999 69999999999999999999888777666444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=5.8e-08  Score=87.59  Aligned_cols=109  Identities=14%  Similarity=0.011  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CCHH
Q 015029            2 ATDLEKKAKEAFIDD----YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEP--SMSK   71 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g----~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p--~~~~   71 (414)
                      +..+...|..++. +    ++++|+.+|.+|++  +.++.+++++|.+|..    .+++.+|+..|++|+.+++  .++.
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  126 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD  126 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence            3456778888887 7    99999999999976  5689999999999998    8899999999999999988  4599


Q ss_pred             HHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           72 AYWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        72 a~~~~g~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +++.+|.+|..    .+++++|+.+|+++..+ +.+......++.+.
T Consensus       127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            99999999999    89999999999999998 66666778888777

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.69  E-value=8.6e-08  Score=96.54  Aligned_cols=110  Identities=11%  Similarity=0.147  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC--
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS--   68 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~--   68 (414)
                      .....+......|+|++|+.+|.++|.+     .|++   +..+.++|.+|..+|+|++|+..+++++.+     .++  
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3344455555678999999999999986     4454   577899999999999999999999999977     344  


Q ss_pred             -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 015029           69 -MSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTNLIKEF  113 (414)
Q Consensus        69 -~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l-----~p~~~~~~~~l~~~  113 (414)
                       ....++++|.+|..+|+|++|...|++++.+     .|+++........+
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence             4568999999999999999999999999874     78888776655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.68  E-value=7e-08  Score=84.63  Aligned_cols=100  Identities=8%  Similarity=0.110  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~---~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------   68 (414)
                      +..+...|..++..|++++|+.+|.+++.+   .+++    ..++.++|.+|..+|++++|+..+++++.+.+.      
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            345778899999999999999999999998   4433    567999999999999999999999999987432      


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      ...++..+|.++..+|++++|..+|++++.+..
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            234678999999999999999999999987643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.67  E-value=2.3e-07  Score=74.11  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS-------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~-------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~   74 (414)
                      +++.+..|..+|..++|..|+..|..|++..       +..+.++.++|.||+++|+++.|+..+++|+.++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4556666777777777777777776666642       123455555566666666666666666666666665555544


Q ss_pred             HHH
Q 015029           75 RKA   77 (414)
Q Consensus        75 ~~g   77 (414)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.66  E-value=2e-07  Score=90.91  Aligned_cols=114  Identities=5%  Similarity=-0.113  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKL-Q-NFTEAVADANRAIELEPSMSKAYWRKATA   79 (414)
Q Consensus         3 e~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl-~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~   79 (414)
                      ..+..++.++...+ .+++++..++.+|..+|.+..++..|+.++..+ + ++++++.++++++.++|.+..+|+.++.+
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv  168 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45677899999999 599999999999999999999999999999998 8 99999999999999999999999999999


Q ss_pred             HHHcCChH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           80 CMKLEEYE--------TAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        80 ~~~lg~y~--------~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      +..+|.++        ++++++.++++++|.|..+......+...
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999998        99999999999999999888887776633

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=3.8e-07  Score=93.47  Aligned_cols=124  Identities=10%  Similarity=0.003  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-C   80 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~-~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~-~   80 (414)
                      .-+...|..+...|++++|+..|.++|...|.++ .+|.+++.++.+.|++++|+..|.+|+...|.....++..|.+ +
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  401 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            3466778888999999999999999999999985 6899999999999999999999999999988887777777765 3


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      ..+|+++.|...|+++++++|++..+...+..+...++....+..+
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~  447 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  447 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence            4699999999999999999999988877777766444443333333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.60  E-value=6.2e-07  Score=71.58  Aligned_cols=80  Identities=14%  Similarity=0.054  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~-------p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      ++.-++.+|..++..++|..|+..|+.|+.+.       .....++..+|.+|+.+|+++.|+..+++++.++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35567889999999999999999999999873       34678999999999999999999999999999999999887


Q ss_pred             HHHHHHH
Q 015029          108 NLIKEFV  114 (414)
Q Consensus       108 ~~l~~~~  114 (414)
                      ..+...+
T Consensus        84 ~n~~~~~   90 (104)
T 2v5f_A           84 GNLKYFE   90 (104)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            7666555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.60  E-value=1.2e-07  Score=89.83  Aligned_cols=124  Identities=9%  Similarity=-0.050  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMK   82 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~--~~a~~~~g~~~~~   82 (414)
                      ....+..+...|+|++|++.|..++...|.+. +++.+|.++++.++|.+|+..|+.++...+..  ..+++.+|.++..
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence            35578889999999999999999999999888 99999999999999999999999887653221  4589999999999


Q ss_pred             cCChHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           83 LEEYETAKVALEKGASLA--PG-DSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +|++++|+.+|+++....  |. ...+...++.|...++....+.....+
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~  233 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW  233 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999998544  54 445777788888777666666554444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.59  E-value=3.6e-07  Score=91.91  Aligned_cols=112  Identities=16%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC-
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS-   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~-   68 (414)
                      +.+......+..+|+|++|+.+|.++|.+     .|++   ...+.++|.+|..+|+|++|+..+++++.+     .+. 
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            44556667788999999999999999976     3444   578899999999999999999999999977     344 


Q ss_pred             --CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHH
Q 015029           69 --MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKEFV  114 (414)
Q Consensus        69 --~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~  114 (414)
                        ....++++|.+|..+|+|++|...|++++.     +.|+++.....+..+.
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence              456899999999999999999999999987     4788887766654444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.57  E-value=1.3e-06  Score=85.32  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------------------
Q 015029            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIK------------------------------   48 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~---y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k------------------------------   48 (414)
                      |-+++-+|..++..++   +.+|+.+|.+||+++|+++.++..++.||..                              
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            3456778888887655   5789999999999999998888877776642                              


Q ss_pred             --------------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           49 --------------LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        49 --------------l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                                    .|++++|+..+++|+.++| +..+|..+|.++...|++++|.+.|.+++.++|..+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence                          3455555555555555553 244445555555555555555555555555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.55  E-value=6e-07  Score=74.16  Aligned_cols=103  Identities=10%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChH
Q 015029           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE---AVADANRAIELE-P-SMSKAYWRKATACMKLEEYE   87 (414)
Q Consensus        13 ~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~---Al~~~~~Ai~l~-p-~~~~a~~~~g~~~~~lg~y~   87 (414)
                      ........+...|.+++..++.+....+++|.++.+..+...   ++..++..+..+ | ...+++|.+|+.++++|+|.
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            344456677788988888888899999999999999887666   999999998877 5 57789999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           88 TAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      .|..+++.+++++|+|.++......++.
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999998888777763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.52  E-value=1.2e-06  Score=73.53  Aligned_cols=89  Identities=13%  Similarity=0.019  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK-   82 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~-   82 (414)
                      .|..++..+.+++|+.+|.+|.+.  .++.+++++|.+|..    .+++.+|+..|++|.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            445555555666666666666665  456666666666666    56666666666666654  456666666666666 


Q ss_pred             ---cCChHHHHHHHHHHHHhC
Q 015029           83 ---LEEYETAKVALEKGASLA  100 (414)
Q Consensus        83 ---lg~y~~A~~~~~~a~~l~  100 (414)
                         .+++++|..+|+++.++.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               666666666666666553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.52  E-value=1.1e-06  Score=85.12  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE--------PSMS   70 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~--------p~~~   70 (414)
                      +...|..++..|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|+|++|+..+++++.+.        |...
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            3445555555666666666666655543322      1234555666666666666666666666553        2233


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      .++..+|.+++.+|++++|...|++++.+.+
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            4555566666666666666666666665554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.49  E-value=1.4e-06  Score=89.23  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 015029            3 TDLEKKAKEAFI-------DDYFE-------LAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (414)
Q Consensus         3 e~~~~~g~~~~~-------~g~y~-------~Ai~~y~~AL~-~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p   67 (414)
                      +.+...|..+..       .|+++       +|+..|.+|+. ..|++..++..+|.++.++|++++|+..|++++.++|
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p  352 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED  352 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Confidence            345666777665       69987       99999999998 7999999999999999999999999999999999999


Q ss_pred             CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           68 SMS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        68 ~~~-~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      .++ .+|..+|.++.+.|+++.|...|+++++..|.+..+..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~  394 (530)
T 2ooe_A          353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  394 (530)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred             cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence            885 69999999999999999999999999999887654433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.46  E-value=1.6e-06  Score=83.92  Aligned_cols=128  Identities=12%  Similarity=-0.077  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----ELFADRAQASIKLQNFTEAVADANRAIELEPSM------SK   71 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~-----~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------~~   71 (414)
                      +.+...|..++..|++++|+.++.+++...|.+.     .++..+|.+|...|++++|+..+.+++.+.+..      ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4466789999999999999999999999887652     368899999999999999999999999986542      34


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 015029           72 AYWRKATACMKLEEYETAKVALEKGASLAP--------GDSRFTNLIKEFVGLLMQNAVYLCWNYEL  130 (414)
Q Consensus        72 a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  130 (414)
                      +++.+|.++...|+|++|...|++++.+.+        ....+...++.+....+.-.....+..+.
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  161 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            578899999999999999999999998753        12234444555554444444444444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.42  E-value=2.3e-06  Score=86.66  Aligned_cols=104  Identities=17%  Similarity=0.061  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            5 LEKKAKEAFID-----DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         5 ~~~~g~~~~~~-----g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      +...|..+...     +++++|+.+|.++++.  .++.+++++|.+|...|   ++++|+.+|++|++.  .++.+++.+
T Consensus       294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  369 (490)
T 2xm6_A          294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL  369 (490)
T ss_dssp             HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            34444444444     4555555555555443  23444555555554433   445555555555443  344455555


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           77 ATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        77 g~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |.+|..    .+++++|+.+|+++.+.+  ++.+...++.+.
T Consensus       370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y  409 (490)
T 2xm6_A          370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY  409 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence            555554    445555555555544432  233344444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.40  E-value=1e-05  Score=81.94  Aligned_cols=108  Identities=12%  Similarity=-0.014  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Q 015029            2 ATDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAY   73 (414)
Q Consensus         2 Ae~~~~~g~~~~~----~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~   73 (414)
                      ++.+...|..++.    .+++++|+.+|.++++.  .++.+++.+|.+|..    .+++++|+.+|++|+..  .++.++
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  114 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQ  114 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3456777888888    88899999999888876  578888889998888    88899999999988875  478888


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           74 WRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        74 ~~~g~~~~~----lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +++|.+|..    .+++++|+.+|+++...  .+......++.+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            889988888    88889999888888765  35666666766663

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.32  E-value=6.7e-06  Score=68.88  Aligned_cols=94  Identities=14%  Similarity=-0.004  Sum_probs=82.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~----lg~y~~A~   90 (414)
                      .+++++|+.+|.++.+.....  +.  +|.+|...+.+++|+.+|++|...  .++.+++++|.+|..    .+++.+|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            457999999999999987444  34  999999999999999999999987  689999999999999    99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           91 VALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      .+|+++.+.  .+......+..+...
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999999887  567888888887743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=3.2e-06  Score=66.27  Aligned_cols=68  Identities=19%  Similarity=0.146  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~---y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~   69 (414)
                      ++.+...|.+++..++   .++|..++.+||.++|+++.+++.+|..++..|+|.+|+..+++++..+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4667889999987776   7999999999999999999999999999999999999999999999999873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.25  E-value=1.5e-06  Score=88.84  Aligned_cols=103  Identities=11%  Similarity=0.006  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPN---SAELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~---~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~   68 (414)
                      +..+.+.|..+..+|+|++|+.+|.++|.+     .|+   -+..+.++|.+|..+|+|++|+..+++|+.+     +|+
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            566788999999999999999999999987     333   3678999999999999999999999999976     566


Q ss_pred             C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 015029           69 M---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        69 ~---~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      +   ...+-.++.++..++.|++|...|.++.+-.-+|.
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5   45667899999999999999999999876544444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.24  E-value=7.4e-06  Score=82.58  Aligned_cols=105  Identities=12%  Similarity=0.036  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            5 LEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         5 ~~~~g~~~~~~g---~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      +...|..+...|   ++++|+..|.+++...|..+..++++|.+|...    +++++|+..|+++.   |.++.+++++|
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg  255 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLA  255 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            455667777777   777777777777777777777767777777554    57777777777776   66777777777


Q ss_pred             HH-H--HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           78 TA-C--MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        78 ~~-~--~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+ |  ...+++++|+.+|+++...+  +..+...++.+.
T Consensus       256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y  293 (452)
T 3e4b_A          256 QLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLY  293 (452)
T ss_dssp             HHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence            77 3  35677777777777766544  555566665555

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=5.6e-06  Score=70.71  Aligned_cols=78  Identities=10%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDD---YFELAYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g---~y~~Ai~~y~~AL~~~-P-~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      .+..++.|.++.+.+   ++.++|.++...++.+ | ++.++++++|.+|+++++|.+|+++++++++++|++..|...+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            356788899999988   7779999999999998 7 5689999999999999999999999999999999998886654


Q ss_pred             HHH
Q 015029           77 ATA   79 (414)
Q Consensus        77 g~~   79 (414)
                      -.+
T Consensus       112 ~~i  114 (152)
T 1pc2_A          112 RLI  114 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.17  E-value=7.1e-06  Score=77.34  Aligned_cols=85  Identities=12%  Similarity=0.092  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCChHH
Q 015029           18 FELAYDLYSQAIEISPN--SAELFADRAQASIKL-----QNFTEAVADANRAIELEPSM-SKAYWRKATACMK-LEEYET   88 (414)
Q Consensus        18 y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl-----~~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~~~~-lg~y~~   88 (414)
                      ...|...+.+||+++|+  +..+|..+|..|.++     |+.++|..+|++|++++|+. ..+++.+|..|.. .|+++.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            57899999999999999  677999999999996     99999999999999999974 9999999999988 599999


Q ss_pred             HHHHHHHHHHhCCC
Q 015029           89 AKVALEKGASLAPG  102 (414)
Q Consensus        89 A~~~~~~a~~l~p~  102 (414)
                      |...|++++..+|.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999998876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.14  E-value=1e-05  Score=81.48  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=67.5

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            6 EKKAKEAFID----DYFELAYDLYSQAIEISPNSAELFADRAQAS---IKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         6 ~~~g~~~~~~----g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~---~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      ...|..+...    +++++|+.+|.+++   |.++.+++++|.+|   ...+++++|+.+|++|+..+  ++.+++.+|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            4555555444    57777777777776   66777777777773   34567777777777777543  6777777777


Q ss_pred             HHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           79 ACMKLE-----EYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        79 ~~~~lg-----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +|. .|     ++++|+.+|+++.   +.+..+...++.+.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            776 44     7777777777776   66666666666555

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.08  E-value=9.1e-05  Score=62.11  Aligned_cols=83  Identities=16%  Similarity=0.074  Sum_probs=73.9

Q ss_pred             CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           33 PNSAELFADRAQASIKLQN---FTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        33 P~~~~~~~~ra~~~~kl~~---~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      .-+....+++|.|+.+..+   ..+++..++..+..+|. ..+.+|.+|+.++++|+|..|..+++.+++++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4568899999999999864   55799999999999884 6789999999999999999999999999999999999888


Q ss_pred             HHHHHHH
Q 015029          109 LIKEFVG  115 (414)
Q Consensus       109 ~l~~~~~  115 (414)
                      ....++.
T Consensus       116 Lk~~Ie~  122 (144)
T 1y8m_A          116 LKSMVED  122 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777773

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.07  E-value=3.9e-05  Score=63.56  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029           35 SAELFADRAQASIKLQN---FTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~---~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l  110 (414)
                      ++...++.|.|+.+..+   ...++..++..++.+|. ..+.+|.+|++++++|+|..|..+++.+++++|+|.++....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            57899999999999864   55799999999999984 588999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhh
Q 015029          111 KEFVGLLMQ  119 (414)
Q Consensus       111 ~~~~~~~~~  119 (414)
                      ..++..+..
T Consensus       119 ~~Ie~ki~k  127 (134)
T 3o48_A          119 SMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            877754433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.98  E-value=3.1e-05  Score=66.71  Aligned_cols=109  Identities=13%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEPS-------   68 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-------   68 (414)
                      ++.+...++..|.|+.|+.+++.++....++         ..++..+|.+++..++|..|...|.+|+.+...       
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            6788899999999999999999977764332         348899999999999999999999999866321       


Q ss_pred             ------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           69 ------------------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        69 ------------------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                                        ..+..|++|.||..++++++|+..++.. ...-..+.+...+++++
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                              1268899999999999999999987642 22223455666666553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.97  E-value=9.8e-05  Score=70.64  Aligned_cols=98  Identities=10%  Similarity=-0.018  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRK   76 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P--~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~~a~~~~   76 (414)
                      +...|.+++..|++++|+..|.++|..+|  .+.+++..++.+|+++|+++.|...++++...+|+      ....++.-
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            45677888888888888888888888776  77888888888888888888888888888888872      33333333


Q ss_pred             HHHHHHcC--ChHHHHHHHHHHHHhCCC
Q 015029           77 ATACMKLE--EYETAKVALEKGASLAPG  102 (414)
Q Consensus        77 g~~~~~lg--~y~~A~~~~~~a~~l~p~  102 (414)
                      |.+.+..|  ++.+|...|+.+....|+
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            43366556  788888888887777665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=6.4e-05  Score=73.85  Aligned_cols=96  Identities=8%  Similarity=0.016  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      ....+|..++..|+|.+|++.|.++++..|..                 ..++.++|.+|..+|+|++|+..+.+++.+.
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999988765                 2468899999999999999999999888765


Q ss_pred             CCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           67 PSMSK------AYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        67 p~~~~------a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      +....      ++..+|.++...|+++.|...++.++..
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  124 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF  124 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            44322      2333455555556666666666655544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.94  E-value=4.5e-05  Score=85.37  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------   67 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p---------------   67 (414)
                      ..+...|..++..|+|++|+.+|..|        ..|..+|.+|.++|+|++|+..+.+|.....               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            35678999999999999999999985        4799999999999999999999998854433               


Q ss_pred             ----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           68 ----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        68 ----------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                                .+++.+..++..|..+|.|++|+..|+.++.+++.+..+...++.+.
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence                      14445667788899999999999999999999998887776676666

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.93  E-value=4e-05  Score=73.36  Aligned_cols=99  Identities=8%  Similarity=-0.018  Sum_probs=84.0

Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHHHH
Q 015029            9 AKEAFIDD--YFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIEL----------EPSMSKAYW   74 (414)
Q Consensus         9 g~~~~~~g--~y~~Ai~~y~~AL~~~P~--~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l----------~p~~~~a~~   74 (414)
                      |.+.+..|  ++.+|+..|+++.+..|+  +...+++   |++++|+|++|..+++.++.+          +|.++.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            43355555  999999999999888886  4555665   899999999999999988877          588999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      +++.+.+.+|+  +|.+.+.++..++|+++.+.....+
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999998  8999999999999999977666544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=5.1e-05  Score=74.55  Aligned_cols=96  Identities=11%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------------HH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------------------AE   37 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------------------------------~~   37 (414)
                      .+...|..++..|+|++|+.+|.+++...+..                                              +.
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            35667777777777777777777766543221                                              33


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~------p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      ++.++|.+|..+|+|.+|+..+..++..-      +....++..+|.+|..+|+|..|...|++++.+
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            45566666666666666666666666541      223456666666666666666666666666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.86  E-value=3e-05  Score=77.69  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------------   67 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p----------------   67 (414)
                      .+...|+.++..|.|++|+.+|+.+        ..|..+|.|+.++|+|++|+..|.+|.  ++                
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence            4567788888888888888888875        357788888888888888888888882  22                


Q ss_pred             -----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           68 -----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        68 -----------~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                                 .++.-...+..+|...|++++|+..|++++.+++.+-.+...++.+.
T Consensus       194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~  251 (449)
T 1b89_A          194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  251 (449)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence                       11222233446788889999999999999999998888777776666

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.77  E-value=0.00013  Score=57.71  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC---------------CeeeecccccccccCCcceEEE
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE---------------EAYHFQPRLFGKIIPAKCRYEV  279 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~~~v  279 (414)
                      ++||+++++.+.|.+.++|+.+++|.|.+.++.|.|+......               ..|.-.+.|-..|+++..+.+.
T Consensus         6 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~   85 (100)
T 3gla_A            6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG   85 (100)
T ss_dssp             CEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEE
T ss_pred             cEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEE
Confidence            6899999999999999999999999999999999998643211               1366677899999999999999


Q ss_pred             eCcEEEEEEeeCC
Q 015029          280 LSTKVEIRLAKAE  292 (414)
Q Consensus       280 ~~~kiei~L~K~~  292 (414)
                      ...-+.|+|.|..
T Consensus        86 ~~GvL~I~~pK~~   98 (100)
T 3gla_A           86 RNGVLEIRIPKRP   98 (100)
T ss_dssp             ETTEEEEEEEBC-
T ss_pred             eCCEEEEEEecCC
Confidence            9999999999974

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.66  E-value=0.00022  Score=80.03  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015029           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        33 P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .+++.+|+++|.++...|++++|+..|.+|     +++.+|++.|.++.++|+|++|+++|.++++..+.
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            456889999999999999999999999776     78999999999999999999999999999988744

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.64  E-value=0.00032  Score=55.68  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCC----------eeeecccccccccCCcceEEEeCcEE
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE----------AYHFQPRLFGKIIPAKCRYEVLSTKV  284 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~----------~y~~~~~L~~~I~p~~s~~~v~~~ki  284 (414)
                      .+||+++++.+.|.+.++|+.+++|.|.+.++.|.|+.....+.          .|.-.+.|-..|+++..+-+....-+
T Consensus         8 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL   87 (102)
T 4fei_A            8 AADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVL   87 (102)
T ss_dssp             CEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEE
T ss_pred             cEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEE
Confidence            68999999999999999999999999999999999986432111          36667789999999999999999999


Q ss_pred             EEEEeeCCC
Q 015029          285 EIRLAKAEP  293 (414)
Q Consensus       285 ei~L~K~~~  293 (414)
                      .|+|.|..+
T Consensus        88 ~I~lpK~~~   96 (102)
T 4fei_A           88 TVRFEKLRP   96 (102)
T ss_dssp             EEEEEBSSC
T ss_pred             EEEEEccCc
Confidence            999999764

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=5.2e-05  Score=62.73  Aligned_cols=81  Identities=16%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             ccccccCCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeecccccccc-cCCc--ceEEEeCcEEEEEEe
Q 015029          215 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI-IPAK--CRYEVLSTKVEIRLA  289 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I-~p~~--s~~~v~~~kiei~L~  289 (414)
                      ||.=.|+++.|+|.|.++.+.  ..++.+.++++.|.|+..     +|.+.|.|-|+| ..+.  ++|......+.|+|.
T Consensus         5 ~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~-----PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp   79 (134)
T 2k8q_A            5 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKVA   79 (134)
T ss_dssp             EEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS-----SSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC-----CeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence            678899999999999999988  789999999998888753     699999999999 4444  456666679999999


Q ss_pred             eCCC-CCCCccc
Q 015029          290 KAEP-IQWSSLE  300 (414)
Q Consensus       290 K~~~-~~W~~L~  300 (414)
                      |..+ +.|+.|.
T Consensus        80 K~~~Ge~F~dLD   91 (134)
T 2k8q_A           80 KLNKNEYFEDLD   91 (134)
T ss_dssp             ESSTTCCCSSTT
T ss_pred             CCCCCCCCCCcc
Confidence            9976 6899986

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.47  E-value=0.00047  Score=56.68  Aligned_cols=79  Identities=13%  Similarity=0.048  Sum_probs=67.7

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEee-eEEEEEEEcCCC---C--------eeeecccccccccCCcc-eEEEeC
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGE-QILSVSIDVPGE---E--------AYHFQPRLFGKIIPAKC-RYEVLS  281 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~-~~l~v~~~~~~~---~--------~y~~~~~L~~~I~p~~s-~~~v~~  281 (414)
                      .+||+++++.+.|.+.++|+.+++|.|.+.+ +.|.|+......   .        .|.-.+.|-..|+++.. +-+...
T Consensus        26 ~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~  105 (123)
T 3aab_A           26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN  105 (123)
T ss_dssp             CEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET
T ss_pred             cEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC
Confidence            5899999999999999999999999999999 999999764321   1        46667789999999988 888888


Q ss_pred             cEEEEEEeeCCC
Q 015029          282 TKVEIRLAKAEP  293 (414)
Q Consensus       282 ~kiei~L~K~~~  293 (414)
                      .-+.|+|.|...
T Consensus       106 GvL~I~lPK~~~  117 (123)
T 3aab_A          106 GVLTIRIPIAGT  117 (123)
T ss_dssp             TEEEEEEEGGGE
T ss_pred             CEEEEEEEcCCC
Confidence            899999999753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.46  E-value=0.00043  Score=57.02  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFEL---AYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~---Ai~~y~~AL~~~-P-~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      +..++.|-++.+..+...   +|.++...+..+ | ..-++++.+|..|+++|+|.+|+.+++.+++++|++..|.-.+.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            455777888888887766   999999988876 5 46789999999999999999999999999999999988876655


Q ss_pred             HH
Q 015029           78 TA   79 (414)
Q Consensus        78 ~~   79 (414)
                      .+
T Consensus       116 ~i  117 (126)
T 1nzn_A          116 LI  117 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00063  Score=54.36  Aligned_cols=82  Identities=17%  Similarity=0.331  Sum_probs=69.5

Q ss_pred             CccccccCCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCc---ceEEEeCcEEEEEE
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK---CRYEVLSTKVEIRL  288 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~---s~~~v~~~kiei~L  288 (414)
                      ++|.=.|+++.|+|.|.++.+.  ..++.+.++++.|.|.+.     +|.+.|.|-++|.-++   ++|......+.|+|
T Consensus        18 P~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~-----PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~l   92 (115)
T 3eud_A           18 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKV   92 (115)
T ss_dssp             CCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET-----TEEEEEECSSCEECSTTCEEEEETTTTEEEEEE
T ss_pred             CcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC-----CeEEEEecCcceecCCCcceEEeCCCcEEEEEE
Confidence            3788899999999999999876  678999999998988874     6999999999995544   37878788999999


Q ss_pred             eeCCC-CCCCccc
Q 015029          289 AKAEP-IQWSSLE  300 (414)
Q Consensus       289 ~K~~~-~~W~~L~  300 (414)
                      .|..+ +..+.|.
T Consensus        93 pK~~~GE~F~dLD  105 (115)
T 3eud_A           93 AKLNKNEYFEDLD  105 (115)
T ss_dssp             EESSTTCCCCCTT
T ss_pred             cCCcCCCcCCCcc
Confidence            99986 5788775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.41  E-value=0.00021  Score=71.69  Aligned_cols=81  Identities=10%  Similarity=0.003  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPN---SAELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~-----~P~---~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~   68 (414)
                      +..+.+.|..+..+|+|++|+.+|.++|.+     .|+   -+..+.++|.+|..+|+|++|+..+++|+.+     +|+
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            566788999999999999999999999986     233   3678999999999999999999999999977     566


Q ss_pred             CHH---HHHHHHHHHHH
Q 015029           69 MSK---AYWRKATACMK   82 (414)
Q Consensus        69 ~~~---a~~~~g~~~~~   82 (414)
                      ++.   .+..++.+...
T Consensus       409 Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          409 HSLIEDLILLLEECDAN  425 (429)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            643   44555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.34  E-value=0.00031  Score=70.46  Aligned_cols=70  Identities=14%  Similarity=0.081  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~--------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l-----~p~   68 (414)
                      |..+.+.|..+..+|+|++|+.+|.++|.+        +|+-+..|.++|.+|..+|+|++|+..+++|+.+     +|+
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            567788999999999999999999999986        3334678999999999999999999999999976     566


Q ss_pred             CHH
Q 015029           69 MSK   71 (414)
Q Consensus        69 ~~~   71 (414)
                      ++.
T Consensus       420 Hp~  422 (433)
T 3qww_A          420 HPY  422 (433)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.31  E-value=0.0033  Score=61.95  Aligned_cols=96  Identities=16%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN   60 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------~~~~~~ra~~~~kl~~~~~Al~~~~   60 (414)
                      +.+...|..+...|+...|+..|.+||.+....                      ..++..++.+++.+|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            355667777888899999999999999984221                      2345567788889999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015029           61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (414)
Q Consensus        61 ~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~   98 (414)
                      .++..+|.+-.+|..+-.+|+..|+..+|+..|+++..
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.29  E-value=0.0012  Score=64.45  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK   71 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~   71 (414)
                      +...|..++..|++++|+.++++||.++|+ ..+|..+|.++...|++++|+..|.+|++++|....
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            444566777899999999999999999974 778899999999999999999999999999997653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.27  E-value=0.0021  Score=53.11  Aligned_cols=77  Identities=12%  Similarity=-0.001  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y---~~Ai~~y~~AL~~~P~-~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +..++.|-++.+..+.   ..+|.++...+..+|. .-++++.+|..|+++|+|.+|+++++.++++.|++..|.-....
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            4567777788887765   4799999999999884 47899999999999999999999999999999999888666554


Q ss_pred             H
Q 015029           79 A   79 (414)
Q Consensus        79 ~   79 (414)
                      +
T Consensus       121 I  121 (134)
T 3o48_A          121 V  121 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.26  E-value=0.0013  Score=52.01  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeecccccccccCCcceEEE-eCcEEEE
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  286 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei  286 (414)
                      .|++++++.+.|.+.++|+.+++|.|.+.++.|.|+....   ++     .+|.-.+.|-..|+++..+-++ ...-+.|
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I   83 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI   83 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence            5899999999999999999999999999999999986432   11     1266677898999999999899 5789999


Q ss_pred             EEeeCC
Q 015029          287 RLAKAE  292 (414)
Q Consensus       287 ~L~K~~  292 (414)
                      +|.|..
T Consensus        84 ~lPK~~   89 (101)
T 2wj5_A           84 QATPAS   89 (101)
T ss_dssp             EECBCC
T ss_pred             EEECCC
Confidence            999964

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.23  E-value=0.0032  Score=52.67  Aligned_cols=77  Identities=12%  Similarity=-0.001  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y---~~Ai~~y~~AL~~~P~-~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~   78 (414)
                      +..++.|-++.+..+-   .++|.++...+...|. .-++++.+|..|+++|+|.+|+++++.+++++|++..|.-.+..
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            4567778888887765   4799999999998884 56899999999999999999999999999999999887655444


Q ss_pred             H
Q 015029           79 A   79 (414)
Q Consensus        79 ~   79 (414)
                      +
T Consensus       120 I  120 (144)
T 1y8m_A          120 V  120 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.21  E-value=0.0013  Score=56.07  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             CccccccCCCeEEEEEEeCCCCCCceEEEEe-eeEEEEEEEcCC-----C----------CeeeecccccccccCCcceE
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRY  277 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~  277 (414)
                      +++||+++++.+.|.+.++|+.+++|.|.+. ++.|.|+.....     +          ..|.-.+.|-..|+++..+-
T Consensus        44 p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A  123 (151)
T 1gme_A           44 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  123 (151)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEE
Confidence            4689999999999999999999999999995 578999864321     1          13566778989999999888


Q ss_pred             EEeCcEEEEEEeeCCC
Q 015029          278 EVLSTKVEIRLAKAEP  293 (414)
Q Consensus       278 ~v~~~kiei~L~K~~~  293 (414)
                      +....-+.|+|.|...
T Consensus       124 ~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          124 GLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEETTEEEEEEECCCC
T ss_pred             EEECCEEEEEEEccCc
Confidence            8888999999999753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.17  E-value=0.0017  Score=61.17  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHH---c--------cCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHHHH
Q 015029           32 SPNSAELFADRAQASIK---L--------QNFTEAVADANRAIELEPS--MSKAYWRKATACMKL-----EEYETAKVAL   93 (414)
Q Consensus        32 ~P~~~~~~~~ra~~~~k---l--------~~~~~Al~~~~~Ai~l~p~--~~~a~~~~g~~~~~l-----g~y~~A~~~~   93 (414)
                      +|+++.+++-.|.+...   .        +....|...+++|++++|.  +..+|..+|..|..+     |+.+.|.++|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            56678888888777755   1        2467899999999999999  677999999999996     9999999999


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHH
Q 015029           94 EKGASLAPGD-SRFTNLIKEFV  114 (414)
Q Consensus        94 ~~a~~l~p~~-~~~~~~l~~~~  114 (414)
                      ++++.++|+. ......+++..
T Consensus       228 erAL~LnP~~~id~~v~YA~~l  249 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADAL  249 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHT
T ss_pred             HHHHHhCCCCCchHHHHHHHHH
Confidence            9999999974 76666666544

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.07  E-value=0.0022  Score=55.16  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=66.6

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C-----------CeeeecccccccccCCcceEEE
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E-----------EAYHFQPRLFGKIIPAKCRYEV  279 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~-----------~~y~~~~~L~~~I~p~~s~~~v  279 (414)
                      +|++++++.+.|.+.++|+.+++|.|.+.++.|.|+.....     +           ..|.-.+.|-..|+++..+-+.
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~  138 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF  138 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence            79999999999999999999999999999999999865332     1           1355667898999999988888


Q ss_pred             eCcEEEEEEeeCCC
Q 015029          280 LSTKVEIRLAKAEP  293 (414)
Q Consensus       280 ~~~kiei~L~K~~~  293 (414)
                      ...-++|+|-|...
T Consensus       139 ~nGvL~I~lpK~~~  152 (161)
T 4eld_A          139 ENGVLSVILPKAES  152 (161)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEcCCC
Confidence            88899999999653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.98  E-value=0.00059  Score=68.28  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHccCHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN---------------------------SAELFADRAQASIKLQNFTEAVA   57 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~---------------------------~~~~~~~ra~~~~kl~~~~~Al~   57 (414)
                      +...+..+...|+|++|+.+|..+++..++                           +...+.++|.+++..|+|++|+.
T Consensus        64 y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~  143 (449)
T 1b89_A           64 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL  143 (449)
T ss_dssp             ---------------------------------------------CHHHHTTTTTCC----------------CTTTHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            344455566667777777766666653221                           12356666666667777777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           58 DANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        58 ~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      +|..+        ..|.++|.|+.++|+|++|+++|+++
T Consensus       144 ~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          144 LYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             HHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            77655        46788899999999999999999888

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.95  E-value=0.0087  Score=63.34  Aligned_cols=114  Identities=12%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEI-----------SPN-----------SAELFADRAQASIKLQNFTEAVADANRAI   63 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~-----------~P~-----------~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai   63 (414)
                      ...+......|+++.|..+|.++|..           .|.           ...+|+..+.+..+.++.+.|...|.+|+
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45566777789999999999999875           253           34578888888888899999999999999


Q ss_pred             Hh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           64 EL-EPSMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        64 ~l-~p~~~~a~~~~g~~~~~lg~-y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      .. .+.....|...|..-+..++ ++.|...|+.+++..|.+..+...+.+....++.
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~  519 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE  519 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC
Confidence            87 54566788888888777765 8999999999999999888776555554443333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.89  E-value=0.0085  Score=63.42  Aligned_cols=131  Identities=5%  Similarity=-0.031  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~-~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +...++...+.|+.+.|..+|.+|++. .+....+|...|....+.+ +++.|...|++++...|+++..+...+.....
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            444555666788999999999999997 4445677777777666665 49999999999999999999998888988889


Q ss_pred             cCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhc
Q 015029           83 LEEYETAKVALEKGASLAPG---DSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVG  135 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (414)
                      .|+.+.|...|++++...|+   ...+.....+.+...+....+..........+.
T Consensus       517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999998884   333444455555444444444444444444333

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=96.83  E-value=0.0039  Score=49.72  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             ccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeecccccccccCCcceEEE-eCcEEEEE
Q 015029          217 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  287 (414)
Q Consensus       217 dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~  287 (414)
                      +++++++.+.|.+.++|+.+++|.|.+.++.|.|+....   ++     ..|.-.+.|-..|+++..+-.+ ...-+.|+
T Consensus         6 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~   85 (106)
T 3l1e_A            6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFS   85 (106)
T ss_dssp             EEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEE
T ss_pred             EEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEE
Confidence            789999999999999999999999999999999986321   11     2366677899999999998888 67899999


Q ss_pred             EeeCCC
Q 015029          288 LAKAEP  293 (414)
Q Consensus       288 L~K~~~  293 (414)
                      |-|..+
T Consensus        86 ~PK~~~   91 (106)
T 3l1e_A           86 GPKIPS   91 (106)
T ss_dssp             EEBCCC
T ss_pred             EEccCc
Confidence            999754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.77  E-value=0.0049  Score=52.98  Aligned_cols=78  Identities=18%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----------------------HHHHHHHHHHHHHccCHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS---PNS----------------------AELFADRAQASIKLQNFTEAV   56 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~---P~~----------------------~~~~~~ra~~~~kl~~~~~Al   56 (414)
                      ++.+...|+.+|..++|..|+..|.+||+..   +.+                      .++.+.+|.||++++++.+|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            4567889999999999999999999998762   111                      268899999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           57 ADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus        57 ~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ...+..-. ....++..+.+|..|
T Consensus       143 ~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          143 AILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHhcCCc-hhcCHHHHHHHHHHh
Confidence            87654321 223677777777665

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=96.68  E-value=0.012  Score=44.82  Aligned_cols=73  Identities=7%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             ccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeecccccccccCCcceEEEe-CcEEEEEEe
Q 015029          219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLA  289 (414)
Q Consensus       219 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~  289 (414)
                      .++++.+.|.+.++|+.+++|.|.+.++.|.|+.....     +   ..|.-.+.|-..|+++..+-++. ..-+.|+|-
T Consensus         3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            47889999999999999999999999999999864321     1   24667788999999999999998 778999998


Q ss_pred             eC
Q 015029          290 KA  291 (414)
Q Consensus       290 K~  291 (414)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.63  E-value=0.039  Score=46.60  Aligned_cols=110  Identities=15%  Similarity=0.017  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 015029            4 DLEKKAKEAFIDDYF------ELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y------~~Ai~~y~~AL~~~P~~--------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~   69 (414)
                      .+......+-+.|+.      +.-++.|.+|+..-|-.        ..+++..| .+..+++.++|...|+.|+.+...+
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkF   93 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKKF   93 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTB
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHH
Confidence            344555566666887      88889999999987754        34555555 3456799999999999999998889


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHH
Q 015029           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL-IKEFV  114 (414)
Q Consensus        70 ~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~-l~~~~  114 (414)
                      ++.|...|.--.+.|+...|...+.+++.+.|...++... +..++
T Consensus        94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~  139 (161)
T 4h7y_A           94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN  139 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence            9999999999999999999999999999999987764433 44333

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=96.45  E-value=0.0066  Score=46.78  Aligned_cols=73  Identities=10%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             cCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC----CeeeecccccccccCCcceEEE-eCcEEEEEEee
Q 015029          220 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  290 (414)
Q Consensus       220 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  290 (414)
                      .+++.+.|++.++|+.+++|.|.+.++.|.|+....    ++    ..|.-.+.|-..|+++..+-++ ...-+.|+|.|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            467889999999999999999999999999886422    11    1366677898999999988888 67889999998


Q ss_pred             CC
Q 015029          291 AE  292 (414)
Q Consensus       291 ~~  292 (414)
                      ..
T Consensus        83 ~~   84 (90)
T 2y1y_A           83 KQ   84 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0075  Score=64.26  Aligned_cols=78  Identities=18%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           19 ELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus        19 ~~Ai~~y~~AL~~--------~P~~----------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      -+|+.+..++|+.        .+.+          ..++..-+..++..|+|+-|+.++++|+.+.|.....|++|+.||
T Consensus       302 v~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vY  381 (754)
T 4gns_B          302 LDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCH  381 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            4677777777642        2222          335555677778889999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKG   96 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a   96 (414)
                      ..+|+|+.|+-.+.-|
T Consensus       382 i~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          382 IKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHTTCHHHHHHHHHHS
T ss_pred             HHhccHHHHHHHHhcC
Confidence            9999999999877765

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.14  E-value=0.011  Score=51.50  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---C-----CeeeecccccccccCCcceEEE-eCcEEEE
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  286 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei  286 (414)
                      .|++++++.+.|.+.++|+.+++|.|++.++.|.|+.....   +     .+|.-.+.|-..|+++..+-++ ...-+.|
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            48899999999999999999999999999999998864321   1     1366677899999999999888 5788999


Q ss_pred             EEeeCCC
Q 015029          287 RLAKAEP  293 (414)
Q Consensus       287 ~L~K~~~  293 (414)
                      +|-|...
T Consensus       146 ~lPK~~~  152 (175)
T 2klr_A          146 NGPRKQV  152 (175)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9999653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.67  E-value=0.26  Score=49.85  Aligned_cols=102  Identities=11%  Similarity=-0.096  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------------
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA---------------------------------------   45 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~---------------------------------------   45 (414)
                      +...+..+...|+.+.|...|.+|+.. |.+..+++..+..                                       
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            455666777788888888888888888 8875444333221                                       


Q ss_pred             -HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           46 -SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        46 -~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                       +.+.+.++.|...|++| ...+.....|...|..-+.++ +++.|...|+.+++..|+++.+..
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence             22355677788888888 333335566666677666666 588888888888888887776533

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.61  E-value=0.21  Score=43.05  Aligned_cols=95  Identities=9%  Similarity=-0.013  Sum_probs=74.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h--C-------------CCCH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--L--E-------------PSMS   70 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~--l--~-------------p~~~   70 (414)
                      .+-.+|-.|.|..|+-++.     .-+.....+..+.||.++++|..|+.+++..+.  .  +             |.+-
T Consensus        39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            4567788888888887763     345577788889999999999999999999993  2  2             2233


Q ss_pred             H-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           71 K-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        71 ~-a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      + .+..+|.++...|+-++|+..|.+.....|--+.+.
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            3 455689999999999999999999998888655444

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=95.60  E-value=0.045  Score=52.13  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             ccccccCCC----eEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C---CeeeecccccccccCCcceEEEe-Cc
Q 015029          215 RHEFYQKPE----EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---EAYHFQPRLFGKIIPAKCRYEVL-ST  282 (414)
Q Consensus       215 r~dW~Qt~~----~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~---~~y~~~~~L~~~I~p~~s~~~v~-~~  282 (414)
                      ..|.+.+++    .+.|++-++|+.+++|.|++.++.|.|+.....    +   ..|.-.+.|-..|+++..+-++. ..
T Consensus       100 ~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nG  179 (314)
T 2bol_A          100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDD  179 (314)
T ss_dssp             GGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSS
T ss_pred             ccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCC
Confidence            568899999    899999999999999999999999999864321    1   24777788999999999999998 78


Q ss_pred             EEEEEEeeCCC
Q 015029          283 KVEIRLAKAEP  293 (414)
Q Consensus       283 kiei~L~K~~~  293 (414)
                      -+.|+|.|..+
T Consensus       180 VL~I~lPK~~~  190 (314)
T 2bol_A          180 VLVIEAPVNEP  190 (314)
T ss_dssp             EEEEEEEBSSC
T ss_pred             EEEEEEeccCc
Confidence            99999999765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.065  Score=57.09  Aligned_cols=55  Identities=20%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD   58 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~   58 (414)
                      -+..++..+...|+|+-|+.+-.+|+...|.....|+.++.||+.+|+|+.|+-.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            3556788899999999999999999999999999999999999999999999844

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.86  E-value=0.26  Score=48.45  Aligned_cols=92  Identities=13%  Similarity=0.031  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----CHHHH
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEP---S----MSKAY   73 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~P~--~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p---~----~~~a~   73 (414)
                      ..|..++..|+|.+|+..+.+.++....  +    .+.+......|..++++..+...+..|.....   .    .+...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6799999999999999999999886322  1    56788889999999999999999998876541   2    24456


Q ss_pred             HHHHHHHH-HcCChHHHHHHHHHHHH
Q 015029           74 WRKATACM-KLEEYETAKVALEKGAS   98 (414)
Q Consensus        74 ~~~g~~~~-~lg~y~~A~~~~~~a~~   98 (414)
                      ..-|..+. ..++|..|...|-.++.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            66888899 89999999999888864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.86  E-value=0.34  Score=44.80  Aligned_cols=62  Identities=24%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS   70 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~   70 (414)
                      ...+++.|+.++|++.....|+.+|.|+.....+-..+.-.|+|+.|+.-++.+..++|...
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            35688999999999999999999999999999999999999999999999999999999753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.72  E-value=0.6  Score=47.09  Aligned_cols=108  Identities=10%  Similarity=0.003  Sum_probs=80.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      ...+....+.++.+.|...|.+| ...+.....|...|..-+..+ +++.|...|+.++...|+.+..+...+.....+|
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            34445555678899999999999 433335667777777777666 6999999999999999999888888888888999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           85 EYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      +.+.|...|+++    +....+.......+...+
T Consensus       369 ~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          369 DEENARALFKRL----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            999999999987    233444444444443333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.12  E-value=1  Score=45.55  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=73.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Q 015029            7 KKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLE   84 (414)
Q Consensus         7 ~~g~~~~~~g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-~~~a~~~~g~~~~~lg   84 (414)
                      ..-..+.+.|++++|+.+|.+..... .-+...|..+-.+|.+.|++++|...|+.....+-. +...|..+-.+|.+.|
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g  189 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK  189 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence            34456778888888888888877642 224667777778888888888888888888776532 5667777888888888


Q ss_pred             ChHHHHHHHHHHHHh--CCCCHH
Q 015029           85 EYETAKVALEKGASL--APGDSR  105 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l--~p~~~~  105 (414)
                      ++++|.+.|++....  .|+...
T Consensus       190 ~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          190 NADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             CHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcCHHH
Confidence            888888888887654  454443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.11  Score=51.75  Aligned_cols=97  Identities=5%  Similarity=-0.042  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---CHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEP---S---MSKAYWR   75 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p---~---~~~a~~~   75 (414)
                      +...|..++..|+++.|+..|.++.......   ..++.....+++..+++..+...+.+|-.+-.   +   .......
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            4678999999999999999999988864333   67888888899999999999999999977632   1   1345666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           76 KATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        76 ~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      .|.++...++|..|...|-.++.-..
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccCC
Confidence            78888999999999999988765443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.83  E-value=0.27  Score=49.84  Aligned_cols=77  Identities=10%  Similarity=-0.000  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++..+|........+..|..+|.+|+.+.|.++.+|.++|++....|++-+|+.+|.+++-...-.+.+...+..+-
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            55666777777778899999999999999999999999999999999999999999999877666666666665544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.64  E-value=0.28  Score=49.77  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      -+...|+.+-....+..|..+|.+|+.+.|++...|..+|..+...++.-+|+.+|-+++....-.+.|.-++...+-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999998877788888888887764

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.25  E-value=0.47  Score=43.88  Aligned_cols=69  Identities=13%  Similarity=0.061  Sum_probs=61.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015029           44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (414)
Q Consensus        44 ~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~  112 (414)
                      ..+++.+++.+|+..+...|+.+|.+......+...|.-.|+++.|...++.+.+++|........+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~   73 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   73 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            356678999999999999999999999999999999999999999999999999999987765444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.88  E-value=4  Score=41.12  Aligned_cols=93  Identities=10%  Similarity=0.083  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 015029           16 DYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVAL   93 (414)
Q Consensus        16 g~y~~Ai~~y~~AL~~~-P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-~~~~a~~~~g~~~~~lg~y~~A~~~~   93 (414)
                      ++.+.|.++|.+..... .-|...|..+-.+|.+.|++++|+..|+.....+- -+...|.-+-.+|.+.|++++|...|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            34788999999877652 23567888899999999999999999999887653 26778888889999999999999999


Q ss_pred             HHHHHh--CCCCHHHHH
Q 015029           94 EKGASL--APGDSRFTN  108 (414)
Q Consensus        94 ~~a~~l--~p~~~~~~~  108 (414)
                      ......  .|+...+..
T Consensus       164 ~~M~~~G~~Pd~~ty~~  180 (501)
T 4g26_A          164 AHMVESEVVPEEPELAA  180 (501)
T ss_dssp             HHHHHTTCCCCHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHH
Confidence            998764  454444333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.47  E-value=0.73  Score=44.98  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~   64 (414)
                      +...+..++..|++.+|+..+..++..+|-+-.++..+-.+|+..|+..+|+..|.++.+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677788999999999999999999999999999999999999999999999988765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.30  E-value=3.2  Score=41.16  Aligned_cols=94  Identities=12%  Similarity=0.102  Sum_probs=74.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----HHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIE---LEPSM----SKA   72 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~---l~p~~----~~a   72 (414)
                      ...+..++..|+|.+|...+.......-..      .+++..-...|+..++|..|...+.++-.   -.+..    ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            567899999999999999998876542221      56778888899999999999999988742   23333    346


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015029           73 YWRKATACMKLEEYETAKVALEKGASL   99 (414)
Q Consensus        73 ~~~~g~~~~~lg~y~~A~~~~~~a~~l   99 (414)
                      +...|..+...++|.+|-.+|..++..
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            677899999999999999999888753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.87  E-value=1.2  Score=37.59  Aligned_cols=73  Identities=15%  Similarity=-0.005  Sum_probs=60.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 015029           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (414)
Q Consensus        12 ~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~   85 (414)
                      +...+|.++|-+.|+.++..+...+.+|+..|..-++.|++..|...+.+|+.+.|... -.+..|+.-...|.
T Consensus        70 ~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl~~~~  142 (161)
T 4h7y_A           70 LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNLNLQK  142 (161)
T ss_dssp             HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHHHTTC
T ss_pred             HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhhhcCC
Confidence            35568999999999999999888899999999999999999999999999999998653 44555555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.80  E-value=1.9  Score=45.21  Aligned_cols=80  Identities=18%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--------LEPSMSKAYWRKATAC   80 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~--------l~p~~~~a~~~~g~~~   80 (414)
                      ...++..|+++.|++..     ...++...|.++|..+++.++++.|..+|.++=.        ....+.+.+.+++...
T Consensus       659 f~~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          659 FELALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence            33444555555555543     2335667778888888888888888877776421        1123444444444444


Q ss_pred             HHcCChHHHHHHH
Q 015029           81 MKLEEYETAKVAL   93 (414)
Q Consensus        81 ~~lg~y~~A~~~~   93 (414)
                      ...|++..|..+|
T Consensus       734 ~~~~~~~~A~~~~  746 (814)
T 3mkq_A          734 ETTGKFNLAFNAY  746 (814)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCchHHHHHHH
Confidence            4444444444333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.44  E-value=1.3  Score=38.32  Aligned_cols=55  Identities=15%  Similarity=0.001  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai   63 (414)
                      +...+...+...|+++.|++.....     ++...|..+|...+..|+++-|..||.++=
T Consensus         7 D~~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            7 DPHIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3456778899999999999987653     577899999999999999999999887754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.00  E-value=8.7  Score=33.08  Aligned_cols=87  Identities=16%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      +++.-.-...++-.+|+.|+-+-.-   +-|.+++....++..++-.|.|..|+-.+     ..-+-.-+.|..+.||..
T Consensus         3 ~~~~~kI~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~k   74 (242)
T 3kae_A            3 SKLIGKICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKK   74 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHH
Confidence            3444555667888999988754322   34555677888899999999999987544     234567788999999999


Q ss_pred             cCChHHHHHHHHHHH
Q 015029           83 LEEYETAKVALEKGA   97 (414)
Q Consensus        83 lg~y~~A~~~~~~a~   97 (414)
                      +.+|..|+.+++..+
T Consensus        75 lKdYkkA~~~le~il   89 (242)
T 3kae_A           75 KKDYKKAIKSLESIL   89 (242)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999988

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.56  E-value=1.7  Score=48.59  Aligned_cols=91  Identities=10%  Similarity=-0.035  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEI-----------------------SPNSAELFADRAQASIKLQNFTEAVADANRA   62 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~-----------------------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~A   62 (414)
                      +-.|.+++..|++++|..+|.+|-..                       ....+.+|......+.+.+.++.++..+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66899999999999999999876211                       0112467788888888999999999999999


Q ss_pred             HHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHHH
Q 015029           63 IELEPS-MS----KAYWRKATACMKLEEYETAKVALEKG   96 (414)
Q Consensus        63 i~l~p~-~~----~a~~~~g~~~~~lg~y~~A~~~~~~a   96 (414)
                      |+..+. ..    ..|.++..++..+|+|++|-..+...
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            988653 22    36889999999999999998777543

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=84.81  E-value=2.7  Score=39.75  Aligned_cols=71  Identities=11%  Similarity=-0.012  Sum_probs=56.2

Q ss_pred             CCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCC-----------eeeecccccccccCCcceEEEeCcEEEEEE
Q 015029          221 KPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEE-----------AYHFQPRLFGKIIPAKCRYEVLSTKVEIRL  288 (414)
Q Consensus       221 t~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~-----------~y~~~~~L~~~I~p~~s~~~v~~~kiei~L  288 (414)
                      ++..+.|.+.+ +|+.+++|.|++.++.|+|+.......           .|.=.+.|-..|+++..+-+....-+.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            45578888888 999999999999999999986432111           255567788999999988888888888888


Q ss_pred             eeC
Q 015029          289 AKA  291 (414)
Q Consensus       289 ~K~  291 (414)
                      -|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            774

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.22  E-value=4.3  Score=30.34  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |-.+..+|..+-..|+|.+|+.+|..||+.
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            445677777777888888888877777664

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=83.90  E-value=4.6  Score=30.12  Aligned_cols=30  Identities=30%  Similarity=0.233  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |-.+..+|..+-..|+|.+|+.+|..||+.
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345667777777788888888877777664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.86  E-value=11  Score=39.27  Aligned_cols=79  Identities=16%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..+...++++.|+..|.++=     +   +..+..+|..+++.+........+...+. .    .....+++.+
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~-----d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-~----~~A~~~~~~~  749 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAH-----D---LESLFLLHSSFNNKEGLVTLAKDAETTGK-F----NLAFNAYWIA  749 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-H----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcc-----C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-h----HHHHHHHHHc
Confidence            46788999999999999999998741     1   11222333335555544444444443221 1    1112234445


Q ss_pred             CChHHHHHHHHH
Q 015029           84 EEYETAKVALEK   95 (414)
Q Consensus        84 g~y~~A~~~~~~   95 (414)
                      |++++|++.|..
T Consensus       750 g~~~~a~~~~~~  761 (814)
T 3mkq_A          750 GDIQGAKDLLIK  761 (814)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            566655555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=82.88  E-value=17  Score=39.96  Aligned_cols=96  Identities=14%  Similarity=0.005  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATA   79 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~----~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p-~~~~a~~~~g~~   79 (414)
                      +...-+.+.+.|+.++|..+|....+    ...-|...|..+-..|.+.|++++|+..|+.....+- -+.-.|.-+-.+
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            44455688999999999999976432    1234577888899999999999999999999987753 266777777788


Q ss_pred             HHHcCCh-HHHHHHHHHHHHhC
Q 015029           80 CMKLEEY-ETAKVALEKGASLA  100 (414)
Q Consensus        80 ~~~lg~y-~~A~~~~~~a~~l~  100 (414)
                      +.+.|+. ++|...|+......
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcC
Confidence            9999985 68888888876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.15  E-value=19  Score=35.05  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHH
Q 015029           40 ADRAQASIKLQNFTEAVADANRAIEL----EP--SMSKAYWRKATACMKLEEYETAKVALEKGASLA---PGDSRFTNLI  110 (414)
Q Consensus        40 ~~ra~~~~kl~~~~~Al~~~~~Ai~l----~p--~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~---p~~~~~~~~l  110 (414)
                      ..+|..|+..|+|.+|+..+.+...-    +.  ...+.|..-...|+.++++..+...|.++....   +.++.+...+
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999888864    21  246788888999999999999999999987654   3567666666


Q ss_pred             HHHHHHHh
Q 015029          111 KEFVGLLM  118 (414)
Q Consensus       111 ~~~~~~~~  118 (414)
                      ..|.+.+.
T Consensus       183 ~~~~Gi~~  190 (394)
T 3txn_A          183 DLQSGILH  190 (394)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhHHH
Confidence            66665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	2e-25
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	3e-25
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	7e-12
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	4e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	9e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (245), Expect = 2e-25
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 203 EAAMAAPARPKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------ 255
           +   +       +++ Y+K P+ VVV V+ K I      V F EQ  ++           
Sbjct: 9   DEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLR 68

Query: 256 ------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF 301
                     + +Q +L   I P +C +   +++++I L K +  +W  LE 
Sbjct: 69  LHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEA 120

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 3e-25
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query: 213 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 272
           K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct: 2   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 61

Query: 273 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 300
            +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 62  EQSTFKVLSTKIEIKLKKPEAVRWEKLE 89

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 7e-12
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 219 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 278
           Y + + V +    +     NV  +  +   S        + +  +  LF  I P   +++
Sbjct: 9   YDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFK-HLNEIDLFHCIDPNDSKHK 67

Query: 279 VLSTKVEIRLAKAEP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 336
                +   L K E    W  L                     +  +       VD++ 
Sbjct: 68  RTDRSILCCLRKGESGQSWPRL----------------TKERAKLNW-----LSVDFNN 105

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 211 RPKYRHEFYQKPEEVVVTV--FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 268
           R  Y   + Q   ++ V V      +  K V+V      + V++     E    + +L  
Sbjct: 19  RENY--TWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTH 76

Query: 269 KIIPAKCRYEVLSTKVEI-RLAKAEPIQWSSL 299
           KI      + +   K  +  L+K     W+++
Sbjct: 77  KINTESSLWSLEPGKCVLVNLSKVGEYWWNAI 108

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLE 84
               +++
Sbjct: 381 NTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 11/75 (14%), Positives = 25/75 (33%)

Query: 7  KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
          + A   +    FE A     Q     P++  +    +    + +    +   +  AI+  
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 67 PSMSKAYWRKATACM 81
          P +++AY        
Sbjct: 64 PLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
            A                 LA   + +A+ + PN  + + +      + + F  AVA   
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           RA+ L P+ +  +   A    +    + A     +   L P   
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+  
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
            +  + + A +  ++   ++P  +
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFA 373

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEK 95
            A  +      A+     
Sbjct: 279 NALKEKGSVAEAEDCYNT 296

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGDSR 105
           P  + 
Sbjct: 64  PLLAE 68

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           A+EL+    KA++      +++E Y+ A   L++  SLA 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 16/93 (17%), Positives = 30/93 (32%)

Query: 9   AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
            K A  +   + A +L  +AI+ SP  A L +   +      +F  A     ++I+L P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
                 +        +  +           L  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           + + ++      +A+     AI+  P  +              ++E A   L +   L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 102 GD 103
             
Sbjct: 62  EY 63

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 1/141 (0%)

Query: 15  DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAY 73
           D+  E A+ L   AIE++  +  ++  R      LQ +  E +      IE +P   + +
Sbjct: 56  DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRR 133
             +      L +       +    +    +       +  +         L +  +LL+ 
Sbjct: 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175

Query: 134 VGNKNICLNIRSLDIFSEGFC 154
               N   N R   I +    
Sbjct: 176 DVRNNSVWNQRYFVISNTTGY 196

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 2/114 (1%)

Query: 28  AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-Y 86
            I  S    +++        + +    A      AIEL  +    +  +      L++  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 87  ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNIC 140
                 +       P + +  +  +  V  L   +         +     KN  
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE-LEFIADILNQDAKNYH 147

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
               E   +++ +      +     +    +           +A   L    E +   + 
Sbjct: 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301

Query: 62  AIELEPSMSKAYWRKATACMKLE 84
              ++P M  AY     +   LE
Sbjct: 302 LKAVDP-MRAAYLDDLRSKFLLE 323

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 9/122 (7%)

Query: 27  QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACM 81
           + I      AE  A RAQ +I   N  EA   A  A+E  P     S   A         
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 82  KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLRRVGNKNICL 141
              E   +   +++   +A     +   +   +      +  L     L      +    
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ----SEILFAQGFLQTAWETQEKAF 118

Query: 142 NI 143
            +
Sbjct: 119 QL 120

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 21/161 (13%), Positives = 44/161 (27%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
           ++      +     A  L+  A++  P   E +        + +    A++   R +EL+
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW 126
           P    A    A +         A   L       P  +      +E  G           
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 127 NYELLRRVGNKNICLNIRSLDIFSEGFCLFISEETGELQKQ 167
              L   +  +   L + ++ +        +    G L   
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             E A   Y +A+E+ P       +   + I L    EAV     A+ ++          
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 77  ATACMKLEEY-ETAKVALEKGASLAPGDSR-FTNLIKEF 113
                 +      A   L +  +    D+R  + L+  F
Sbjct: 281 GAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 319

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   Y  A ++ P++ + +   A  +    +    +    R+I ++     A     
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLI-KEFVGLLMQNAVYLCWNYE------L 130
            A   L +   ++  ++    ++     F       ++   ++    L    E      L
Sbjct: 228 KA---LSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELL 284

Query: 131 LRRVGNKNICLNIRSLDIFSEGFCLFISEET 161
            ++  N    +++  +++F        S ET
Sbjct: 285 FQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQNFTEAV 56
           +  +   +A +  + E A   Y+Q ++       +        +     S K  + +  V
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 57  ADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
              + +                      +   A+      A L P + +
Sbjct: 141 KPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
                +    ++ + +E      +  + L +   A A    A+         +       
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253

Query: 81  MKLEE 85
             L +
Sbjct: 254 SLLGQ 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.89
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.76
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.53
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.36
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.27
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.19
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.15
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.14
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.13
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.84
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.62
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.23
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.21
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.02
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	96.99
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	96.85
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.1
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	81.36

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-24  Score=167.06  Aligned_cols=91  Identities=36%  Similarity=0.678  Sum_probs=87.1

Q ss_pred             CCCccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEEEeeC
Q 015029          212 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  291 (414)
Q Consensus       212 ~~~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  291 (414)
                      .|+||+||||++.|+|+|+++++.++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         1 sk~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~   80 (92)
T d1rl1a_           1 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   80 (92)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCCceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEEC
Confidence            37899999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             CCCCCCccccC
Q 015029          292 EPIQWSSLEFS  302 (414)
Q Consensus       292 ~~~~W~~L~~~  302 (414)
                      ++++|++|+++
T Consensus        81 ~~~~W~~L~~~   91 (92)
T d1rl1a_          81 EAVRWEKLEGQ   91 (92)
T ss_dssp             SCCCCSSSBTT
T ss_pred             CCCcCcCcccC
Confidence            99999999975

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.4e-23  Score=171.01  Aligned_cols=94  Identities=24%  Similarity=0.429  Sum_probs=85.4

Q ss_pred             CCCCccccccCC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC------------CeeeecccccccccCCcceE
Q 015029          211 RPKYRHEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE------------EAYHFQPRLFGKIIPAKCRY  277 (414)
Q Consensus       211 ~~~~r~dW~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~------------~~y~~~~~L~~~I~p~~s~~  277 (414)
                      .+++||||||++ +.|+|+||+|+++++++.|+|.+++|+|.|...+|            ..|.++++||++|+|++|+|
T Consensus        17 ~~~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~   96 (134)
T d1wh0a_          17 LAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTF   96 (134)
T ss_dssp             ESCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEE
T ss_pred             ccccccceeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEE
Confidence            348999999995 78999999999999999999999999999976544            35888889999999999999


Q ss_pred             EEeCcEEEEEEeeCCCCCCCccccCCC
Q 015029          278 EVLSTKVEIRLAKAEPIQWSSLEFSKG  304 (414)
Q Consensus       278 ~v~~~kiei~L~K~~~~~W~~L~~~~~  304 (414)
                      +|+++||||+|+|+++.+|++|+....
T Consensus        97 ~v~~~kiei~L~K~~~~~W~~Le~~~~  123 (134)
T d1wh0a_          97 CFTASRIDICLRKRQSQRWGGLEAPAA  123 (134)
T ss_dssp             EECSSEEEEEEEESSSCCCSCSBCCCS
T ss_pred             EeCCCEEEEEEEeCCCCcCcCcccccc
Confidence            999999999999999999999997643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=148.57  Aligned_cols=113  Identities=26%  Similarity=0.435  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      +++++.+|+.++..|+|++|+..|+++|+.+|+++.+|.++|.||+++|+|++|+.+|.+++.++|.++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|+|++|+.+|+++++++|+++.+...+.+++
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999998876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-18  Score=149.87  Aligned_cols=118  Identities=31%  Similarity=0.460  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+.+..+|+.+|..|+|++|+..|.++|+++|+++.+|.++|.||+.+|++++|+.+|++|++++|.+..+|+++|.+|+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      .+|+|++|..+|++++.++|.+..+...+..+...+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888755433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=1e-17  Score=143.13  Aligned_cols=117  Identities=23%  Similarity=0.268  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------AELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      |..+...|+.+|..|+|.+|+..|++||...+..                ..++.|||.||+++|+|.+|+.+|.+|+.+
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4578899999999999999999999999976543                357889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      +|.+.++|+++|.+|+.+|+|++|+.+|++++.++|+|..+...+..+...+.
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888875443

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-19  Score=144.55  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=87.3

Q ss_pred             ccccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeecccccccccCCcceEEEeCcEEEEEEeeCCC
Q 015029          215 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  293 (414)
Q Consensus       215 r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  293 (414)
                      ++.|+||.+.|+|+|+++++  .++.|+|+.+++.|++.+ .+|..|.++++||++|+|++|++++.+++|+|+|.|+++
T Consensus         5 ~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~   82 (110)
T d1ejfa_           5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (110)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             CcEEEECCCEEEEEEEeCCC--CCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEcCC
Confidence            57899999999999999975  578899999999998764 466689999999999999999999999999999999976


Q ss_pred             -CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 015029          294 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  339 (414)
Q Consensus       294 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yp~s~~~~~dWdk~~~  339 (414)
                       .+|++|++++                .++.+.     ++|||||.+
T Consensus        83 ~~~W~~L~~~~----------------~K~~~~-----kvD~dkw~d  108 (110)
T d1ejfa_          83 GQSWPRLTKER----------------AKLNWL-----SVDFNNWKD  108 (110)
T ss_dssp             TCCCSSSBSSC----------------CCCTTE-----EECTTTCCC
T ss_pred             CCCCCceecCC----------------CCcCcE-----EccchheEc
Confidence             6899999774                223333     679999973

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.8e-18  Score=152.49  Aligned_cols=103  Identities=28%  Similarity=0.411  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+.+++.|+.+|..|+|++|+.+|++||.++|+++.+|.+||.||+++|+|++|+.+|++|+.++|++..+|+++|.+|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCH
Q 015029           82 KLEEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~  104 (414)
                      .+|+|++|+.+|++++.++|.+.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999987543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-17  Score=143.15  Aligned_cols=119  Identities=18%  Similarity=0.284  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      |..+...|+.+|..|+|++|+..|++||...|..               ..+|.++|.||+++|+|++|+.++++||.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            5678899999999999999999999999997764               4678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQN  120 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~  120 (414)
                      |.++.+++++|.+|+.+|+|++|+.+|++++.++|+|+.+...+..+...+.+.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.74  E-value=6.1e-17  Score=140.31  Aligned_cols=118  Identities=21%  Similarity=0.250  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~---------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~   66 (414)
                      |+.+...|+.+|..|+|.+|+..|++||...+..               ..+|.|||.||+++++|.+|+.+|++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            5678999999999999999999999999865443               4678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        67 p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      |.+..+|+++|.+|+.+|+|++|..+|.+++.++|++..+...+..+...+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888865543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=8.1e-17  Score=139.45  Aligned_cols=117  Identities=23%  Similarity=0.400  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI----------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~----------------~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l   65 (414)
                      ++.+...|+.++..|+|.+|+..|++||..                .|.+..++.+||.||+++|+|++|+.+|++||++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            567889999999999999999999999874                3556778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 015029           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLM  118 (414)
Q Consensus        66 ~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~  118 (414)
                      +|.++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|...+.
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988885543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=130.23  Aligned_cols=115  Identities=19%  Similarity=0.259  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~-------~~a~~   74 (414)
                      |..+++.|+.+|..|+|++|+.+|+++|+++|+++.++.+||.||+++|+|++|+.+|++||.++|.+       ..+|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999998864       45888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        75 ~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ++|.++..+++|++|+.+|.+++.+++. +.+...+..+.+.+
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            8999999999999999999999999875 55666666666443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.4e-15  Score=136.04  Aligned_cols=116  Identities=21%  Similarity=0.087  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~   81 (414)
                      |+.++.+|.+++..|+|++|+..|.++|.++|+++.+|.++|.+|.++|++++|+.+|++|+.++|.++.+++.+|.+|+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      .+|++++|...|+++++++|.+.....++..+....
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999988777776655433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.2e-15  Score=121.92  Aligned_cols=111  Identities=11%  Similarity=0.032  Sum_probs=100.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 015029            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSM--SKAYWRKATAC   80 (414)
Q Consensus         6 ~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl---~~~~~Al~~~~~Ai~l~p~~--~~a~~~~g~~~   80 (414)
                      -..++.++..+++++|.+.|.++|.++|+++.+++++|.|+++.   +++.+|+..|++++.++|..  ..++|.+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999874   46667999999999998765  56999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      +.+|+|++|+.+|+++++++|++..+...+..+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998888877743

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=8.3e-15  Score=118.04  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      ..+..|..++..|++.+|+..|+++|..+|+++.+|..+|.+|.+++++++|+.+|++|++++|.+..+++.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGA   97 (414)
Q Consensus        84 g~y~~A~~~~~~a~   97 (414)
                      |++++|..+|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.7e-15  Score=121.04  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             CccccccCCCeEEEEEEeCC--CCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCcEEEEE-Eee
Q 015029          214 YRHEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR-LAK  290 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~-L~K  290 (414)
                      .+|.|+||.+.|+|+|.++.  +..++|.|+|+.++|.|.+...++..|.+..+||++|+|++|+|.+.+.+++|+ |+|
T Consensus        20 ~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lkK   99 (124)
T d1wgva_          20 ENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSK   99 (124)
T ss_dssp             SSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECB
T ss_pred             CCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCEEEEEEEe
Confidence            37999999999999998764  345899999999999999988778889999999999999999999999987665 555


Q ss_pred             CCCCCCCccccCCC
Q 015029          291 AEPIQWSSLEFSKG  304 (414)
Q Consensus       291 ~~~~~W~~L~~~~~  304 (414)
                      ....+|++|...+.
T Consensus       100 ~~~~~W~~L~~ge~  113 (124)
T d1wgva_         100 VGEYWWNAILEGEE  113 (124)
T ss_dssp             SSSCCCSCSBTTSC
T ss_pred             cCCCcChhhccCCc
Confidence            56689999987654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.1e-14  Score=123.84  Aligned_cols=98  Identities=19%  Similarity=0.226  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      -.++++|..++..|+|+.|++.|.+   +.+.++.+++++|.+|+.+|+|++|+.+|++||+++|.++.+|+++|.+|+.
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            4678999999999999999999987   4667889999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q 015029           83 LEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~  103 (414)
                      +|+|++|+..|++++...+.+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTC
T ss_pred             hccHHHHHHHHHHHHHhCccC
Confidence            999999999999999877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1e-13  Score=116.81  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus        11 ~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl----------~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      .+-+.+.|++|+..|++||+++|+++.+++++|.+|..+          +.+++|+.+|++|++++|.++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            455677899999999999999999999999999999865          5568999999999999999999999999999


Q ss_pred             HHcCC-----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           81 MKLEE-----------YETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        81 ~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      +.+|+           |..|..+|++++.++|++......+..+.+.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            98764           7999999999999999999999888877733

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.5e-13  Score=126.61  Aligned_cols=125  Identities=13%  Similarity=0.027  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      ++.+...|.++.+.+.+++|+..|++||+++|.+..+|.+||.++..++ ++++|+.++++++.++|.+..+|+++|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            3455667888889999999999999999999999999999999999887 489999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      ..+|++++|+.+|.++++++|.+..+...++.+...++.-..+..+
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999998888888888666554444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-13  Score=117.30  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------------   69 (414)
                      +..+++.|.+++..|+|++|+..|++||+++|+++.+|++||.||.++|+|++|+.+|++|+...+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            45688999999999999999999999999999999999999999999999999999999999875532            


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        70 ----~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                          ..+++++|.++..+|++++|.+.|.+++.+.|..
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                4789999999999999999999999999998874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-13  Score=125.55  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.+|+.
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFT  107 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~  107 (414)
                      +|+|++|+..|+++++++|++....
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC----
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhhh
Confidence            9999999999999999999887644

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=123.65  Aligned_cols=115  Identities=7%  Similarity=-0.025  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g-~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~   80 (414)
                      +..+..+|.++...| ++++|+..|.++|+.+|++..+|.+||.++.++|++++|+.++.++++++|.+..+|+.+|.++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHH
Confidence            457889999999876 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      ..+|+|++|+.+|.++++++|.+..+...++.+...
T Consensus       157 ~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999888877766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=2.3e-13  Score=115.75  Aligned_cols=101  Identities=22%  Similarity=0.155  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS--   68 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~--   68 (414)
                      ..++..|+.++..|+|++|+..|++||++.|+.            +.+|.++|.||.++|+|++|+.++++++.+.+.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            345667999999999999999999999998764            468999999999999999999999999988542  


Q ss_pred             ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 015029           69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (414)
Q Consensus        69 ---------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~  103 (414)
                               ...+++++|.+|..+|++++|+.+|++++++.|..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                     35589999999999999999999999999986643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-12  Score=122.86  Aligned_cols=127  Identities=19%  Similarity=0.125  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+...|..++..|++++|+..|.++++++|+++.++.++|.+|..+|++.+|+..++.++...|....+++.+|.++..
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +|+|++|+..|+++++++|++..+...++.+...+++...+..+..+
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888888888888888888888888777666665555554444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.7e-12  Score=119.27  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg   84 (414)
                      .+.+|..++..|+|++|+..|+++|+.+|+++.+|..+|.+|..+|++++|+.+|.+|+.++|.+..+++.+|.+|..+|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCHH
Q 015029           85 EYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        85 ~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      ++++|...|.+++.++|....
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGG
T ss_pred             cccccccchhhHHHhccchHH
Confidence            999999999999999987643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.1e-12  Score=117.37  Aligned_cols=111  Identities=22%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..++..|+|++|+..|.+++...|.....+..+|.+|.++|++++|+..|++++.++|+++.+++.+|.++..+
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      |++.+|...|+.+....|.+......+..+.
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence            5555555555555555555555555554444

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=6.2e-12  Score=103.78  Aligned_cols=88  Identities=18%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             CccccccCCCeEEEEEEeC---CCCCCceEEEEeeeEEEEEEEcCCCCeeeecccccccccCCcceEEEeCc-EEEEEEe
Q 015029          214 YRHEFYQKPEEVVVTVFAK---GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLA  289 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k---~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~  289 (414)
                      .+|.|.||.+.|.|+|.++   ++.+++|.|+|+.++|.|.+..   ....+..+||++|+|++|+|.+.+. .|+|.|.
T Consensus         8 ~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~---~~~ll~g~L~~~I~~des~W~ied~~~l~i~L~   84 (131)
T d1wfia_           8 PNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKG---QPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE   84 (131)
T ss_dssp             CSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETT---SCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEE
T ss_pred             CCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcC---CceeecccccCcccccccEEEEeCCCEEEEEEE
Confidence            4799999999999999764   5778999999999999998753   2345666999999999999999865 6799999


Q ss_pred             eCCC-CCCCccccCCC
Q 015029          290 KAEP-IQWSSLEFSKG  304 (414)
Q Consensus       290 K~~~-~~W~~L~~~~~  304 (414)
                      |+.. .+|++|...+.
T Consensus        85 K~~~~~~W~~l~~gd~  100 (131)
T d1wfia_          85 KINKMEWWNRLVTSDP  100 (131)
T ss_dssp             BSSSCCCCSCSBSSCC
T ss_pred             ECCCCccCHHHcCCCC
Confidence            9866 68999987653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.5e-12  Score=97.30  Aligned_cols=83  Identities=14%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 015029            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY   73 (414)
Q Consensus         1 ~Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-------~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~   73 (414)
                      .|++.+..|..++..|+|..|+..|.+||++.|.+       +.+|.++|.+|.++|+|++|+..|++|++++|++..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            36788999999999999999999999999885543       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 015029           74 WRKATACMKL   83 (414)
Q Consensus        74 ~~~g~~~~~l   83 (414)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9888766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4.6e-11  Score=107.99  Aligned_cols=114  Identities=13%  Similarity=0.001  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 015029           16 DYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (414)
Q Consensus        16 g~y~~Ai~~y~~AL~~~P----~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~   91 (414)
                      .+++.|+..+++++...+    ..+.+|+++|.+|.++|+|++|+.+|++|+.++|+++.+|+++|.+|..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356788889999887543    3467999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029           92 ALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                      +|++++.++|++..+...++.+...++....+......
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999998898888666665555444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=6e-11  Score=101.65  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+.++|.++++.|+|++||..|++||+++|+++.+|+++|.+|+.+|+|++|+.+|++|++++|++..++..++.++..
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCChHHHH
Q 015029           83 LEEYETAK   90 (414)
Q Consensus        83 lg~y~~A~   90 (414)
                      +..+.++.
T Consensus       158 l~~~~~~~  165 (169)
T d1ihga1         158 IKAQKDKE  165 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=3.3e-10  Score=98.40  Aligned_cols=95  Identities=16%  Similarity=0.040  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 015029            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN   60 (414)
Q Consensus         3 e~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----------------------~~~~~~ra~~~~kl~~~~~Al~~~~   60 (414)
                      +.+...|..++..|++++|+.+|.+||.+.+..                      ..++.+++.+++.+|+|++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            578899999999999999999999999997654                      3678999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015029           61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA   97 (414)
Q Consensus        61 ~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~   97 (414)
                      +++.++|.+..+|..++.+|..+|++.+|+..|+++.
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999983

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.16  E-value=3e-10  Score=90.59  Aligned_cols=88  Identities=18%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      ..+++|.++++.|++.+|+.+|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|.+..+...++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             hhhhhhhh
Q 015029          118 MQNAVYLC  125 (414)
Q Consensus       118 ~~~~~~~~  125 (414)
                      +.-..+..
T Consensus        98 g~~~~A~~  105 (112)
T d1hxia_          98 HNANAALA  105 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            65555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.15  E-value=1.9e-10  Score=98.50  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      -+.+.|.+++..|+|.+|+..|+++|.++|++..+|+++|.||..+|+|++|+.+|.+++.++|++..++..++.+...+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CChHHH
Q 015029           84 EEYETA   89 (414)
Q Consensus        84 g~y~~A   89 (414)
                      +.+.+.
T Consensus       146 ~~~~e~  151 (168)
T d1kt1a1         146 KEHNER  151 (168)
T ss_dssp             HHHHHH
T ss_pred             HhHHHH
Confidence            877653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2.2e-10  Score=99.51  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        35 ~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      ++..+...|.+|++.|+|++|+..|.+||.++|.++.+|+.+|.||..+|+|++|+.+|++++.++|++..+...++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHH
Q 015029          115 GLLMQNAVYLCWNYE  129 (414)
Q Consensus       115 ~~~~~~~~~~~~~~~  129 (414)
                      ..++.-..+.....+
T Consensus        83 ~~l~~~~~A~~~~~~   97 (201)
T d2c2la1          83 LEMESYDEAIANLQR   97 (201)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
Confidence            777766665544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.6e-10  Score=95.58  Aligned_cols=94  Identities=19%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGL  116 (414)
Q Consensus        37 ~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~  116 (414)
                      ..+..+|..|++.|+|++|+.+|++|+.++|++..+|+++|.+|+.+|++++|+.+|+++++++|.+..+...++.+...
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HhhhhhhhhhHHHH
Q 015029          117 LMQNAVYLCWNYEL  130 (414)
Q Consensus       117 ~~~~~~~~~~~~~~  130 (414)
                      ++.-..+.....+.
T Consensus        91 ~g~~~eA~~~~~~a  104 (159)
T d1a17a_          91 LGKFRAALRDYETV  104 (159)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            77666655544443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.4e-10  Score=97.17  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+.+.|.++++.|+|++|+.+|+++|.++|+++.+++++|.||+.+|+|++|+.+|++|+.++|++..+...++.++..+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CChHHHH
Q 015029           84 EEYETAK   90 (414)
Q Consensus        84 g~y~~A~   90 (414)
                      +++....
T Consensus       144 ~~~~~~e  150 (170)
T d1p5qa1         144 RRQLARE  150 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.2e-10  Score=90.42  Aligned_cols=93  Identities=17%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        38 ~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      -+..+|..+++.|+|++|+.+|.++|.++|.++.+|+.+|.+|..+|+|++|+..|.+++.++|.+..+...++.+...+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             hhhhhhhhhHHHH
Q 015029          118 MQNAVYLCWNYEL  130 (414)
Q Consensus       118 ~~~~~~~~~~~~~  130 (414)
                      +.-..+.......
T Consensus        85 ~~~~~A~~~~~~a   97 (117)
T d1elwa_          85 NRFEEAKRTYEEG   97 (117)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            6666655544443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.7e-10  Score=88.18  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~-------~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~  108 (414)
                      ++-++.+|.++++.|+|.+|+..|++|+++.|.       ...+++++|.+++.+|+|++|+..|+++++++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            456789999999999999999999999999653       3679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 015029          109 LIKEFVGLL  117 (414)
Q Consensus       109 ~l~~~~~~~  117 (414)
                      .+..+++.+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988877443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.10  E-value=2.7e-10  Score=96.04  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      -+.+.|.++++.|+|++|+.+|++||.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..+...++.+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             CC
Q 015029           84 EE   85 (414)
Q Consensus        84 g~   85 (414)
                      ++
T Consensus       149 ~~  150 (153)
T d2fbna1         149 KE  150 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.7e-10  Score=91.09  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFVG  115 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~  115 (414)
                      +..+.++|.+|+..|+|++|+.+|++++.++|.+..+++++|.+|+.+|+|++|+.+|++++.++|.+......++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999988765555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=5e-09  Score=87.36  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 015029            2 ATDLEKKAKEAFI----------DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (414)
Q Consensus         2 Ae~~~~~g~~~~~----------~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~-----------~~~~Al~~~~   60 (414)
                      ++.+...|.+++.          .+.+++|+..|++||+++|+++.+|+++|.+|..+|           +|.+|+.+|+
T Consensus        31 ~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~  110 (145)
T d1zu2a1          31 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhh
Confidence            4567788888875          455689999999999999999999999999998875           4799999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 015029           61 RAIELEPSMSKAYWRKATACMKLEEYETA   89 (414)
Q Consensus        61 ~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A   89 (414)
                      +|+.++|++..++..++.+....+.|.++
T Consensus       111 kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         111 QAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887665555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.8e-09  Score=105.84  Aligned_cols=112  Identities=8%  Similarity=-0.076  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      .+...|..+...|++..|+..|.+++..+|  ..+++++|.++..+++|++|+.+|.+|+.++|+++.+|+++|+++...
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             ---------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            345678888888889999998888888765  468999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 015029           84 EEYETAKVALEKGASLAPGDSRFTNLIKEFVGLL  117 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~  117 (414)
                      |++.+|+.+|.+++.++|..+.+...+..+....
T Consensus       200 ~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988888766433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.2e-09  Score=86.04  Aligned_cols=82  Identities=10%  Similarity=0.014  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDD---YFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g---~y~~Ai~~y~~AL~~~P~~--~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~   76 (414)
                      ++.+++.|.+++..+   ++.+|+.+|.++|..+|.+  ..+++++|.+|+++|+|++|+.+|++++.++|++..|...+
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            456788999998744   5567999999999988765  45899999999999999999999999999999999999888


Q ss_pred             HHHHHHc
Q 015029           77 ATACMKL   83 (414)
Q Consensus        77 g~~~~~l   83 (414)
                      +.+...+
T Consensus       113 ~~I~~~~  119 (122)
T d1nzna_         113 RLIDKAM  119 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.7e-08  Score=92.01  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~------P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------   69 (414)
                      ++.+.+.|+.+...|+|++|+..|.+|+.+.      +..+.+|.++|.||.++|++++|+.++++++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            4567888999999999999999999999973      2235789999999999999999999999999986643      


Q ss_pred             HHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCC
Q 015029           70 SKAYWRKATACMK-LEEYETAKVALEKGASLAP  101 (414)
Q Consensus        70 ~~a~~~~g~~~~~-lg~y~~A~~~~~~a~~l~p  101 (414)
                      ..++.++|.+|.. +|+|++|+.+|++++.+.+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6688889988865 7999999999999988754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.74  E-value=2.7e-08  Score=91.37  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=80.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 015029            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (414)
Q Consensus         8 ~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~   87 (414)
                      ++..++..|++++|+..|.++|+.+|+++.++.+++.+|+..|++++|+..|+.+++++|++..++..++.++...+...
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             HHHHHHHH
Q 015029           88 TAKVALEK   95 (414)
Q Consensus        88 ~A~~~~~~   95 (414)
                      ++...+..
T Consensus        82 ~a~~~~~~   89 (264)
T d1zbpa1          82 DFAQGAAT   89 (264)
T ss_dssp             HHTTSCCC
T ss_pred             HHHHHhhh
Confidence            76554444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=2.5e-08  Score=93.64  Aligned_cols=110  Identities=8%  Similarity=0.048  Sum_probs=98.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCh
Q 015029           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAY-WRKATACMKLEEY   86 (414)
Q Consensus        10 ~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~--~~~Al~~~~~Ai~l~p~~~~a~-~~~g~~~~~lg~y   86 (414)
                      ..+...|++.+|+..|+++|..+|++..++..+|.++..+++  +++|+.++++++.++|.+..++ +.+|.++...+.+
T Consensus        81 ~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence            344556668999999999999999999999999999988864  8999999999999999998886 5788999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           87 ETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      ++|+.++++++.++|.+..+...++.+...++.
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998888855543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=9.3e-08  Score=88.24  Aligned_cols=104  Identities=16%  Similarity=0.034  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC------
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIK-LQNFTEAVADANRAIELEPS------   68 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~------~~~~~~ra~~~~k-l~~~~~Al~~~~~Ai~l~p~------   68 (414)
                      +..+.+.|+++...|++++|+..|.+++.+.+..      ..++.++|.+|.. +++|++|+..+.+|+.+.+.      
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            4567889999999999999999999999986554      6788899988866 69999999999999988542      


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 015029           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (414)
Q Consensus        69 ~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~  105 (414)
                      ...++.++|.++..+|+|++|+..|+++..+.+.+..
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            3567899999999999999999999999999887653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=3.9e-07  Score=83.45  Aligned_cols=99  Identities=16%  Similarity=-0.001  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MS   70 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~-----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~------~~   70 (414)
                      ++....+|..++..|++++|+.+|.++|...|.+     ..++..+|.+|..+|++++|+..|.+++.+.+.      ..
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            3455678999999999999999999999999987     458889999999999999999999999988653      35


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015029           71 KAYWRKATACMKLEEYETAKVALEKGASLA  100 (414)
Q Consensus        71 ~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~  100 (414)
                      .+++.++.++...|++..|...+..++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678899999999999999999999988754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=5.8e-07  Score=84.02  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=86.9

Q ss_pred             HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015029           14 IDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQN----------FTEAVADANRAIELEPSMSKAYWRKATACMK   82 (414)
Q Consensus        14 ~~g~-y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~----------~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~   82 (414)
                      ..+. +++|+..|.++|+.+|++..+|..|+.++..+++          +.+|+.++++++..+|.+..+++.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            3444 4899999999999999999999999888776654          8899999999999999999999999999999


Q ss_pred             cCC--hHHHHHHHHHHHHhCCCCHHHHH-HHHHHH
Q 015029           83 LEE--YETAKVALEKGASLAPGDSRFTN-LIKEFV  114 (414)
Q Consensus        83 lg~--y~~A~~~~~~a~~l~p~~~~~~~-~l~~~~  114 (414)
                      +++  +++|+.++.+++.++|.+..... .+..+.
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            886  89999999999999999877643 333444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=5.3e-07  Score=72.17  Aligned_cols=81  Identities=16%  Similarity=0.062  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029           36 AELFADRAQASIKLQ---NFTEAVADANRAIELEPSM-SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~---~~~~Al~~~~~Ai~l~p~~-~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~  111 (414)
                      ....++.|.|+.+..   +..+|+..++.+++.+|.. ..++|.+|++|+++|+|+.|..+++++++++|+|.++.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            778999999999864   5678999999999999876 579999999999999999999999999999999999988877


Q ss_pred             HHHHH
Q 015029          112 EFVGL  116 (414)
Q Consensus       112 ~~~~~  116 (414)
                      .++..
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77733

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.6e-07  Score=93.77  Aligned_cols=116  Identities=7%  Similarity=-0.011  Sum_probs=71.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 015029            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (414)
Q Consensus         9 g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~   88 (414)
                      +......+.|..|+..|.+++.++|.+...+.++|.++.+.+++..|+..+.+++.+++  ..+++++|.++..+|+|++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHH
Confidence            34445567788999999999999999999999999999999999999999999998876  4789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 015029           89 AKVALEKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCW  126 (414)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  126 (414)
                      |..+|.+++.++|++......++.+....+....+..+
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~  208 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY  208 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999988666555554433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1e-06  Score=80.58  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHH
Q 015029            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAY   73 (414)
Q Consensus         4 ~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~----~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~------p~~~~a~   73 (414)
                      .+...|..+...|+++.|+..|.+++...+.+    ...+.++|.+|+.+|++++|+..+++++.+.      |....++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            35667889999999999999999999887655    5677889999999999999999999998653      4467899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015029           74 WRKATACMKLEEYETAKVALEKGASLAP  101 (414)
Q Consensus        74 ~~~g~~~~~lg~y~~A~~~~~~a~~l~p  101 (414)
                      +.+|.+|+.+|++++|...|++++.+.+
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=7.8e-06  Score=75.44  Aligned_cols=115  Identities=10%  Similarity=0.025  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM-K   82 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~-~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~-~   82 (414)
                      +...+......|+++.|...|.++|...|.+. .++..++....+.++++.|+..|.+++...|.....+...|.... .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            34556777788889999999999988888764 467888888888889999999999999888888888888887654 4


Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 015029           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEFVGLLMQ  119 (414)
Q Consensus        83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~  119 (414)
                      .|+++.|...|++++..+|.+..+...+.+.....+.
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~  218 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Confidence            6788889999999998888888776666665544433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.4e-05  Score=73.77  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015029            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (414)
Q Consensus         5 ~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k-l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~l   83 (414)
                      +...++.....|+++.|...|.++++..|.+...+...|..... .|+.+.|...|++++...|.++..+..++..+...
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            45677888889999999999999999999999999988877555 58999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCH
Q 015029           84 EEYETAKVALEKGASLAPGDS  104 (414)
Q Consensus        84 g~y~~A~~~~~~a~~l~p~~~  104 (414)
                      |+++.|...|++++...|.++
T Consensus       217 g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         217 NEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSSSCG
T ss_pred             CChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=7.6e-06  Score=65.28  Aligned_cols=80  Identities=11%  Similarity=-0.046  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~---y~~Ai~~y~~AL~~~P~~~-~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      .+..++.|-++.+..+   ..+||.++..++..+|.+. ++++++|.+|+++|+|++|+.+++++++++|++..|...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            3456778888887655   4689999999999998775 89999999999999999999999999999999998876655


Q ss_pred             HHHH
Q 015029           78 TACM   81 (414)
Q Consensus        78 ~~~~   81 (414)
                      .+-.
T Consensus       115 ~Ie~  118 (124)
T d2pqrb1         115 MVED  118 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.17  E-value=2e-06  Score=71.59  Aligned_cols=90  Identities=18%  Similarity=0.072  Sum_probs=67.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 015029           40 ADRAQASIKLQNFTEAVADANRAIELEPSM------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGD----  103 (414)
Q Consensus        40 ~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~------------~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~----  103 (414)
                      +.+|..++..|+|++|+..|++||.+.|..            ..+|.++|.+|..+|+|++|+..|++++.+.+..    
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            345888889999999999999999998763            3689999999999999999999999999875421    


Q ss_pred             ---H----HHHHHHHHHHHHHhhhhhhhhhHHH
Q 015029          104 ---S----RFTNLIKEFVGLLMQNAVYLCWNYE  129 (414)
Q Consensus       104 ---~----~~~~~l~~~~~~~~~~~~~~~~~~~  129 (414)
                         .    .+...++.+...++....+.....+
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence               1    1334455666555554444444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.10  E-value=1.6e-05  Score=67.87  Aligned_cols=97  Identities=12%  Similarity=-0.108  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHH
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM----------------------SKAYWRKATACMKLEEYETAKVAL   93 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~----------------------~~a~~~~g~~~~~lg~y~~A~~~~   93 (414)
                      ...+.++|..+...|++++|+..|.+|+.+.+..                      ..++..+|.++..+|+|++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            5678899999999999999999999999997632                      257899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhhhhhhhhhHHHHHh
Q 015029           94 EKGASLAPGDSRFTNLIKEFVGLLMQNAVYLCWNYELLR  132 (414)
Q Consensus        94 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (414)
                      ++++.++|.+..+...+..+...++....+...+....+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999888777777655554433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.99  E-value=1.1e-05  Score=73.46  Aligned_cols=72  Identities=14%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        43 a~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      +.-+++.|++++|+..++++++.+|.+..++..+|.+|...|++++|+..|+++++++|++......+..+.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345667899999999999999999999999999999999999999999999999999999988877776655

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.95  E-value=0.00011  Score=65.41  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      ++.++..|..++.++||.+|+.+|.+|.+.  .+..+++++|.+|+.    ..++..|+..+..+...+  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            578899999999999999999999999876  588999999999998    679999999999988754  788999999


Q ss_pred             HHHHH----cCChHHHHHHHHHHHHhCCC
Q 015029           78 TACMK----LEEYETAKVALEKGASLAPG  102 (414)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p~  102 (414)
                      .++..    ..++..|...|+++...++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh
Confidence            98876    46789999999999887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.68  E-value=0.00033  Score=56.03  Aligned_cols=79  Identities=15%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHH
Q 015029           17 YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYET   88 (414)
Q Consensus        17 ~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~----lg~y~~   88 (414)
                      ++++|+.+|.++.+.  .++.+++.+|..|+.    ..++.+|+..|+++...  .++.+.+++|.+|..    ..++..
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence            344444444444432  234444444444443    23444444444444432  234444444444443    234444


Q ss_pred             HHHHHHHHHHh
Q 015029           89 AKVALEKGASL   99 (414)
Q Consensus        89 A~~~~~~a~~l   99 (414)
                      |..+|+++.++
T Consensus       114 A~~~~~~Aa~~  124 (133)
T d1klxa_         114 AVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            44444444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.36  E-value=0.0013  Score=58.17  Aligned_cols=92  Identities=17%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015029            6 EKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (414)
Q Consensus         6 ~~~g~~~~~----~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~k----l~~~~~Al~~~~~Ai~l~p~~~~a~~~~g   77 (414)
                      ...|..++.    ..+...+...+..+.+  ..++.+++++|.+|..    .+++.+|+..|.++.+.+  ++.+++++|
T Consensus       146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG  221 (265)
T d1ouva_         146 TILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHH
Confidence            344555554    4455666666666654  3467777777777776    457777777777777763  577777777


Q ss_pred             HHHHH----cCChHHHHHHHHHHHHhCC
Q 015029           78 TACMK----LEEYETAKVALEKGASLAP  101 (414)
Q Consensus        78 ~~~~~----lg~y~~A~~~~~~a~~l~p  101 (414)
                      .+|..    ..++.+|..+|+++..+..
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            77775    3467777777777776664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.0026  Score=50.50  Aligned_cols=92  Identities=13%  Similarity=0.008  Sum_probs=74.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 015029           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (414)
Q Consensus        15 ~g~y~~Ai~~y~~AL~~~P~~~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~----lg~y~~A~   90 (414)
                      ..|+++|+.+|.++.+..  ++.++++++.  ....++++|+..++++.+.  .++.+++.+|.+|+.    ..++..|.
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            358999999999999875  4455666653  3457899999999999875  589999999999987    56799999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 015029           91 VALEKGASLAPGDSRFTNLIKEFV  114 (414)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~l~~~~  114 (414)
                      .+|+++.+..  ++.....++.+.
T Consensus        80 ~~~~~aa~~g--~~~a~~~Lg~~y  101 (133)
T d1klxa_          80 QYYSKACGLN--DQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHhhhhccC--cchHHHHHHHHH
Confidence            9999998765  466677777665

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.0015  Score=50.88  Aligned_cols=78  Identities=12%  Similarity=0.148  Sum_probs=65.4

Q ss_pred             cccccCCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----CC-----------CeeeecccccccccCCcceEEE
Q 015029          216 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----GE-----------EAYHFQPRLFGKIIPAKCRYEV  279 (414)
Q Consensus       216 ~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~~-----------~~y~~~~~L~~~I~p~~s~~~v  279 (414)
                      +|.+++++.+.|.+.++|+.++++.|.+.++.|.|+....     .+           ..|...+.|-..|+++..+...
T Consensus        13 vdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~   92 (115)
T d1shsa_          13 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF   92 (115)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE
Confidence            6999999999999999999999999999999999886421     11           1355567788899999999999


Q ss_pred             eCcEEEEEEeeCCC
Q 015029          280 LSTKVEIRLAKAEP  293 (414)
Q Consensus       280 ~~~kiei~L~K~~~  293 (414)
                      ...-+.|+|.|...
T Consensus        93 ~nGvL~I~lpK~~~  106 (115)
T d1shsa_          93 ENGVLSVILPKAES  106 (115)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEeCCC
Confidence            99999999999653

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=96.85  E-value=0.0027  Score=51.95  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             CccccccCCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC-----CCC----------eeeecccccccccCCcceE
Q 015029          214 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----GEE----------AYHFQPRLFGKIIPAKCRY  277 (414)
Q Consensus       214 ~r~dW~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~  277 (414)
                      ++.||+++++.++|.+.++|+.+++|.|+++++ .+.++....     .+.          .|.-.+.|-..|+++..+-
T Consensus        43 p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A  122 (150)
T d1gmea_          43 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  122 (150)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEE
Confidence            367999999999999999999999999999864 456664321     111          2444678889999999888


Q ss_pred             EEeCcEEEEEEeeCC
Q 015029          278 EVLSTKVEIRLAKAE  292 (414)
Q Consensus       278 ~v~~~kiei~L~K~~  292 (414)
                      +....-++|+|.|..
T Consensus       123 ~~~nGvL~I~lpK~~  137 (150)
T d1gmea_         123 GLENGVLTVTVPKAE  137 (150)
T ss_dssp             EEETTEEEEEEECCC
T ss_pred             EEECCEEEEEEEcCC
Confidence            888889999999965

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.10  E-value=1.1  Score=32.46  Aligned_cols=30  Identities=23%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015029            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (414)
Q Consensus         2 Ae~~~~~g~~~~~~g~y~~Ai~~y~~AL~~   31 (414)
                      |-.+..+|..+-..|+|++|+.+|..||+.
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345677777777888888888888777664

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.36  E-value=1.3  Score=42.36  Aligned_cols=51  Identities=27%  Similarity=0.176  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 015029           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (414)
Q Consensus        36 ~~~~~~ra~~~~kl~~~~~Al~~~~~Ai~l~p~~~~a~~~~g~~~~~lg~y   86 (414)
                      ....+.+|...+..|+|.-|+..++.++..+|++..|...++.+|.++|.-
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~  480 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  480 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            344555555555556666666666666666666656555566555555543