Citrus Sinensis ID: 015064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccHHHHHHccccccEEEEcccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEcHHcHHHHHHHccHHHHHEEEcccccEEEEEEccccccccccEcccccccccccccccHHHHHHHHHccccEEEEcccHHHHHHHHHHccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccEEccHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYyatkptwkivttdctcsissccfnffsnvtnqhsktlhFTNLTHIIKNKCTWVIKAKGNDEAIAHVKekkndnaqttsESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFvmsaipflpfvfwarddvktrnaGIELGLWVSLGYFVEALGlltsdagrASFISLFTVIVVplfdgmlgaiipahTWFGVLISALGVGmlecsgsppsvgdFLNFLSAIFFGIHMLRTerisrstkkenflplLGYEICVVALLSTIWVLVggwfdssqdfdqspwtwtMLWDWmvtfpwvpalytGIFSTGICLWIEIAAMRDVSATETAIIYgleplwgagFAWFLLGERWSTAGWIGAALVLdvqiflpr
Flexible Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHvkekkndnaqttsesvqiitkrpfwkRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Low Complexity Region (SEG)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVttdctcsissccfnffsnvtnQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Disordered region (IsUnstruct)
*****************SMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIA****************VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL**
Disordered Region (DISOPRED)
***********IASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFS************************************************************************IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Disordered Region (DISEMBL)
*********KTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEK***********VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Disordered Region (DISPRO)
*Y*FSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVT***SKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKN**************KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.376	0.506	0.278	3e-07

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+   ++   +       
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152

Query: 240 GVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
           GVL++ +G   L    S  ++GD L    A+FFG  +      SR
Sbjct: 153 GVLLAFVGFYFLS-GYSGFNIGDILMLFCALFFGAEIAMISHYSR 196

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
225456145	461	PREDICTED: uncharacterized protein LOC10	0.929	0.835	0.634	1e-140
225424254	460	PREDICTED: uncharacterized transporter A	0.729	0.656	0.748	1e-133
255570144	458	conserved hypothetical protein [Ricinus	0.729	0.659	0.725	1e-129
449449134	464	PREDICTED: uncharacterized protein LOC10	0.727	0.648	0.649	1e-114
224111492	315	predicted protein [Populus trichocarpa]	0.618	0.812	0.757	1e-112
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.727	0.665	0.642	1e-111
326490417	430	predicted protein [Hordeum vulgare subsp	0.768	0.739	0.609	1e-111
411113256	436	integral membrane protein [Triticum aest	0.768	0.729	0.599	1e-111
411113259	440	integral membrane protein [Triticum aest	0.768	0.722	0.602	1e-110
411113263	440	integral membrane protein [Triticum urar	0.768	0.722	0.593	1e-109

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/408 (63%), Positives = 308/408 (75%), Gaps = 23/408 (5%)

Query: 26  ATKPTWKIVTTDCTCSISS--CCFNFFSNVTNQHSKTLHFTNLTHIIKN----------K 73
           AT P WK + T  +   S+  CCF FFS   +  +K   F   + ++ N          K
Sbjct: 3   ATYPRWKTIATTSSSDSSTLPCCF-FFSTSPSPRTKRGRFATFSSLLLNPHEYHLGPAKK 61

Query: 74  CTWVIKAKGNDEAIAHVKEKKNDNAQTTSE-----SVQIITK-RPFWKRVLFASKKIRSI 127
              V   + + + ++ + +K    A+  ++     S+Q   K RP W+RVLFASKK++SI
Sbjct: 62  KKSVEIGRPHQQTVSIIHDKCISKAKVKAKFDWKKSIQKGAKSRPLWRRVLFASKKMKSI 121

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
            LLNV+TIVYAS+I ++K  E IM PA+F AVRF +SAIPFLPFVF AR DV+TRNAG+E
Sbjct: 122 ILLNVVTIVYASNIAVVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLE 181

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247
           LGLW+SLGY  EALGLLTS+AGRASF S  TVIVVPL D MLGAI+PA TWFGVL+S LG
Sbjct: 182 LGLWISLGYLAEALGLLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLG 241

Query: 248 VGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLST 307
           V MLECSGSPP+VGD LNFLSAIFFGIH+LRTE++SRSTKKENFLPLLGYE+CVVALLST
Sbjct: 242 VAMLECSGSPPNVGDLLNFLSAIFFGIHILRTEQLSRSTKKENFLPLLGYEVCVVALLST 301

Query: 308 IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVS 367
            W ++GGWFD  QD DQ+ WTW +LWD MV FPW+PALYTG+FSTG+CLW+EI AMRDVS
Sbjct: 302 FWYVIGGWFDGIQDSDQASWTWAVLWDSMVAFPWIPALYTGVFSTGLCLWLEIGAMRDVS 361

Query: 368 ATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLD----VQIF 411
           ATETAIIYGLEPLWGAGFAWFLLGERW T GWIGAAL+L     VQ+F
Sbjct: 362 ATETAIIYGLEPLWGAGFAWFLLGERWGTTGWIGAALLLGGSLTVQMF 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/306 (74%), Positives = 262/306 (85%), Gaps = 4/306 (1%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           +R  W+R+LFAS+K+R I LLNV+T+VYAS+IP++K  E IM PA+F AVRFV+SAIPF+
Sbjct: 110 RRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAIPFI 169

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFV  AR DV+TRNAGIELG WVSLGY +++LGLLTSDAGRASF+S+FTVIVVPL DGML
Sbjct: 170 PFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLDGML 229

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA +PAHTWFG L+S LGV MLE SGSPPSVGD LNFLSA+FFG+HMLRTE ISRST +E
Sbjct: 230 GATVPAHTWFGALMSILGVAMLESSGSPPSVGDLLNFLSAVFFGVHMLRTEHISRSTSRE 289

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+C+VAL STIW  VGG F + Q+ D S   WTMLWDWMV FPW+PA YTGI
Sbjct: 290 NFLPLLGYEVCIVALFSTIWYFVGGSFGAIQECDLSSGMWTMLWDWMVAFPWIPAFYTGI 349

Query: 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLD-- 407
            STG+CLWIE+ AMRDVSATETAIIYGLEP+WGAGFAWFLLGERWS+ GWIGAALVL   
Sbjct: 350 ISTGLCLWIEMDAMRDVSATETAIIYGLEPVWGAGFAWFLLGERWSSLGWIGAALVLGGS 409

Query: 408 --VQIF 411
             VQIF
Sbjct: 410 LTVQIF 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/306 (72%), Positives = 258/306 (84%), Gaps = 4/306 (1%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           ++  WKR++FAS K+RSI LLNVIT+VYAS+IP++K  E IM PA+F  VRF +SAIPF+
Sbjct: 104 RKSLWKRIVFASTKVRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFI 163

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFVF AR DVKTRNAGIELG WVSLGY  +ALGL+TSDAGRASFIS+FTVI+VPL DGML
Sbjct: 164 PFVFQARGDVKTRNAGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGML 223

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA++PA TWFG L+S +GV MLE SGSPP++GD LNFLSA+FFGIHMLRTE +SRST ++
Sbjct: 224 GAVVPARTWFGALMSIIGVAMLEFSGSPPNIGDLLNFLSAVFFGIHMLRTEHVSRSTNEK 283

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+CVVA  ST+W  + G FD  Q  D S WTWTM+W W+VTFPW+PALYTG+
Sbjct: 284 NFLPLLGYEVCVVACFSTLWYFIEGGFDGIQACDPSSWTWTMVWHWIVTFPWIPALYTGV 343

Query: 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALV---- 405
           FSTG+CLWIE+ AM DVSATETAIIYGLEP+WGA FAWFLLGERW TAGWIGA LV    
Sbjct: 344 FSTGLCLWIEMTAMCDVSATETAIIYGLEPVWGAAFAWFLLGERWGTAGWIGATLVLVGS 403

Query: 406 LDVQIF 411
           L VQIF
Sbjct: 404 LTVQIF 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/302 (64%), Positives = 236/302 (78%), Gaps = 1/302 (0%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W+R+ FASKK+RSI LLNV+TIVYAS IP++K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+AGIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV MLE SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++   +S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISES-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
           LYTG+ STG CLW+E+AAM DVSATETAIIY LEP+WG  FAW LLGERW   GWIGAAL
Sbjct: 334 LYTGLLSTGFCLWLEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAAL 393

Query: 405 VL 406
           VL
Sbjct: 394 VL 395

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111492|ref|XP_002315877.1| predicted protein [Populus trichocarpa] gi|222864917|gb|EEF02048.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/256 (75%), Positives = 219/256 (85%)

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
           M PA+F AVRFV+SAIPFLPF   + DD + RNAGIELG WVSLGY  +ALGLLTSDAGR
Sbjct: 1   MDPATFTAVRFVVSAIPFLPFALQSWDDARIRNAGIELGFWVSLGYLTQALGLLTSDAGR 60

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270
           ASFIS+FTVIVVPL DGMLGAI+PAHTWFG L+S +GV MLE SGSPPS+GD LNFLSA+
Sbjct: 61  ASFISMFTVIVVPLLDGMLGAIVPAHTWFGALMSIVGVAMLESSGSPPSIGDLLNFLSAV 120

Query: 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330
           FFG+HMLRTE ISRST K+NFLP+LG+E+CV+A+ STIW  +G WF   Q  D S WTW 
Sbjct: 121 FFGVHMLRTEHISRSTDKKNFLPILGFEVCVIAISSTIWYFLGSWFGDVQTCDPSSWTWE 180

Query: 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLL 390
           M+W W+  FPW+PALYTGIFSTG+CLWIE+AAMRDVSATETAIIYGLEP+WGAGFAWFLL
Sbjct: 181 MVWHWLAVFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFLL 240

Query: 391 GERWSTAGWIGAALVL 406
           GERW   GWIGAALVL
Sbjct: 241 GERWGATGWIGAALVL 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/302 (64%), Positives = 232/302 (76%), Gaps = 1/302 (0%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W R+ FASKK+RSI LLNV+TIVYAS+IP +K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWXRIFFASKKVRSIILLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+ GIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDTGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV ML  SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLASSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++    S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISGS-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
           LYTG+ STG CLW+E+AAM DVSATETAIIY LEP+WG  FAW LLGERW   GWIGAAL
Sbjct: 334 LYTGLLSTGFCLWLEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAAL 393

Query: 405 VL 406
           VL
Sbjct: 394 VL 395

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490417|dbj|BAJ84872.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/325 (60%), Positives = 241/325 (74%), Gaps = 7/325 (2%)

Query: 91  KEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEI 150
           +E + +  +   + V+    RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +
Sbjct: 62  EEGRKEKGRDVGKRVR---GRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEAL 118

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
             PA F  VRFV++AIPFLPFV  A  D +TRN G+ELGLWVSL Y  +A+GL TS+AGR
Sbjct: 119 TEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLTTSEAGR 178

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270
           ASFI+ FTVIVVPL DG  GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+
Sbjct: 179 ASFIAAFTVIVVPLIDGFFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAV 238

Query: 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330
           FFGIHMLRTE+ISRST K+ F+ LL  E+ VVA  S +W L+   F   QD     WT+ 
Sbjct: 239 FFGIHMLRTEQISRSTDKKKFMALLSLEVLVVAFTSILWFLLKDAFVEVQDSGFEAWTFG 298

Query: 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLL 390
            LWD   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGAGFAWFLL
Sbjct: 299 TLWDSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAGFAWFLL 358

Query: 391 GERWSTAGWIGAALV----LDVQIF 411
           GERW  A WIGAALV    L VQ+F
Sbjct: 359 GERWDNAAWIGAALVLCGSLTVQLF 383

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113256|gb|AFW04247.1| integral membrane protein [Triticum aestivum]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 241/322 (74%), Gaps = 4/322 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +   ++ + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 63  REEGRKEEGDASKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 122

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELGLWVSL Y  +A+GL+TS+AGRASF
Sbjct: 123 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLITSEAGRASF 182

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 183 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAVFFG 242

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D     WT+  LW
Sbjct: 243 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSILWFLLKDVFAEVHDSSFESWTFGALW 302

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 303 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAAFAWFLLGER 362

Query: 394 WSTAGWIGAALV----LDVQIF 411
           W  A WIGAALV    L VQ+F
Sbjct: 363 WDNAAWIGAALVLCGSLTVQLF 384

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113259|gb|AFW04249.1| integral membrane protein [Triticum aestivum]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/322 (60%), Positives = 240/322 (74%), Gaps = 4/322 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  REEGGKEKGGVSKRVHGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVGDVLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVAL S IW L+   F    D     WT+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVALTSIIWFLLKDAFVEVHDSSFESWTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGATFAWFLLGER 366

Query: 394 WSTAGWIGAALV----LDVQIF 411
           W  A WIGAALV    L VQ+F
Sbjct: 367 WDNAAWIGAALVLCGSLTVQLF 388

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/322 (59%), Positives = 239/322 (74%), Gaps = 4/322 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDLLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D      T+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFTEVHDSSFESLTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAAFAWFLLGER 366

Query: 394 WSTAGWIGAALV----LDVQIF 411
           W  A WIGAALV    L VQ+F
Sbjct: 367 WDNAAWIGAALVLCGSLTVQLF 388

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.669	0.860	0.263	1.2e-19
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.669	0.860	0.263	1.2e-19
TIGR_CMR|BA_1622	303	BA_1622 "transporter, EamA fam	0.642	0.877	0.235	1.3e-13
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.379	0.521	0.245	1.6e-13
UNIPROTKB|Q3AES3	298	CHY_0503 "Putative membrane pr	0.446	0.620	0.252	3e-13
TIGR_CMR|CHY_0503	298	CHY_0503 "putative membrane pr	0.446	0.620	0.252	3e-13
UNIPROTKB|Q74FR1	308	GSU0545 "Membrane protein, put	0.157	0.211	0.363	3.3e-10
TIGR_CMR|GSU_0545	308	GSU_0545 "membrane protein, pu	0.157	0.211	0.363	3.3e-10
UNIPROTKB|Q83C01	305	CBU_1336 "Transporter, drug/me	0.640	0.868	0.236	3.8e-09
TIGR_CMR|CBU_1336	305	CBU_1336 "membrane protein, pu	0.640	0.868	0.236	3.8e-09

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 237 (88.5 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 79/300 (26%), Positives = 139/300 (46%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406
             +GI  T    W +  +   +   + A+I+  EP++    AW  L E     G IGA L+L
Sbjct:   236 SGILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMIGAGLIL 295

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 237 (88.5 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 79/300 (26%), Positives = 139/300 (46%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406
             +GI  T    W +  +   +   + A+I+  EP++    AW  L E     G IGA L+L
Sbjct:   236 SGILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMIGAGLIL 295

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|BA_1622 BA_1622 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 197 (74.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 68/289 (23%), Positives = 142/289 (49%)

Query:   133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIP--FLPFVFW---ARDDVKTRN-AGI 186
             ++ ++ +   +++ A   + P +F  +RF+ + I   F+  +F    ++  +K  + AG+
Sbjct:    16 VSFIWGATFVVVQNAMSFVGPFTFNGIRFLFAGIILLFVQILFSKKASKQHIKQSSLAGL 75

Query:   187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISA 245
              +G ++ +GY ++  GLL + + +A F++  ++++VP+   + L          G+ ++ 
Sbjct:    76 IVGFFLCIGYVLQTFGLLYTTSSKAGFLTGLSIVMVPILSFIFLKQKATIFIVIGIAVAT 135

Query:   246 LGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVAL 304
              G+ +L    S   ++GD L    A+ F  H+L     S   KK + L L   ++  V L
Sbjct:   136 AGLYLLTAGDSFQLNIGDILVLGCAVAFAAHILVNGFFS---KKISPLLLSTSQVLAVGL 192

Query:   305 LSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALY-TGIFSTGICLWIEIAAM 363
              S+I   +  + D  + F  + WT +       +F +  AL+ T +F+T I  +I+ +A 
Sbjct:   193 FSSICAFL--FEDWEKLFSVALWTNS-------SFLF--ALFLTSLFATSIAFFIQTSAQ 241

Query:   364 RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL 412
             +  S T  AII+ +EP++ A     +  E+ S +  IG   +    +F+
Sbjct:   242 KHTSPTRVAIIFAMEPVFAALTGVLVANEQLSISAIIGCLCIFLGMVFV 290

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 143 (55.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 41/167 (24%), Positives = 82/167 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S+ +R+  L+ +  +++ S      +    + P  +  +RF + ++  LP V        
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   177 --DDVKTRN---AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231
               + +  R     G+ +GL ++LG  ++ +GL+ +    A FI+   VIVVPL   ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   232 IIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHML 277
                  TW G +++ +G+ +L  S S   + GD+L  + A  +G H++
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDSFHVASGDWLQLIGAFVWGGHVI 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AES3 CHY_0503 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0503 CHY_0503 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q74FR1 GSU0545 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 108 (43.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query:   341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
             W  A Y  +F T IC  ++ A  R  + T   +IY L+P+W   F  F+LGER +     
Sbjct:   215 WSLA-YCALFPTVICFTLQNAYQRFTTPTRAGLIYTLDPVWSMLFGVFILGERLTPRELA 273

Query:   401 GAALVL 406
             G  L+L
Sbjct:   274 GCVLIL 279

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0545 GSU_0545 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 108 (43.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query:   341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
             W  A Y  +F T IC  ++ A  R  + T   +IY L+P+W   F  F+LGER +     
Sbjct:   215 WSLA-YCALFPTVICFTLQNAYQRFTTPTRAGLIYTLDPVWSMLFGVFILGERLTPRELA 273

Query:   401 GAALVL 406
             G  L+L
Sbjct:   274 GCVLIL 279

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83C01 CBU_1336 "Transporter, drug/metabolite exporter family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 160 (61.4 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 68/288 (23%), Positives = 129/288 (44%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE 298
               + + L +G +   +G+     +  N     F+ +       +   T +  F   L  E
Sbjct:   121 DFVTALLCLGGIFILTGA-----NIFNMKGGDFWTLGCAVAYALYIVTLQA-FSKKLKPE 174

Query:   299 ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358
               ++AL  +  +L    F     F +   T   ++ W V    +  L+  IF+TG+  ++
Sbjct:   175 DTILAL--SYQILFSLIFPLLTAFYK---TTASIFSWPVI---IAVLFCAIFATGLVFYL 226

Query:   359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406
             ++   R +  +   +IY  EP++ A F + L GE       IG  L+L
Sbjct:   227 QLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGEAIYLNTVIGGFLIL 274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1336 CBU_1336 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 160 (61.4 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 68/288 (23%), Positives = 129/288 (44%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE 298
               + + L +G +   +G+     +  N     F+ +       +   T +  F   L  E
Sbjct:   121 DFVTALLCLGGIFILTGA-----NIFNMKGGDFWTLGCAVAYALYIVTLQA-FSKKLKPE 174

Query:   299 ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358
               ++AL  +  +L    F     F +   T   ++ W V    +  L+  IF+TG+  ++
Sbjct:   175 DTILAL--SYQILFSLIFPLLTAFYK---TTASIFSWPVI---IAVLFCAIFATGLVFYL 226

Query:   359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406
             ++   R +  +   +IY  EP++ A F + L GE       IG  L+L
Sbjct:   227 QLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGEAIYLNTVIGGFLIL 274

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	4e-12
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-06
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	4e-06

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 32/291 (10%)

Query: 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGI 186
           + LL    +   S I +  A E +       A+RF+++A+  LP +      ++      
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPW 69

Query: 187 ELGLWVSLGYFVE-----ALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTWF 239
            L L ++L           L L  + A  AS I     +   L   +L  G  +      
Sbjct: 70  LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL 129

Query: 240 GVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
           G+L++  GV ++   G        +G  L   +A+ + ++    +R+SR          L
Sbjct: 130 GILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLG-----PVTL 184

Query: 296 GYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355
              + ++  L  + +     F +       P              W+  LY G+FSTG+ 
Sbjct: 185 ALLLQLLLALLLLLLFFLSGFGA-------PILSRA---------WLLLLYLGVFSTGLA 228

Query: 356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406
             +   A+R + A+  A++  LEP++ A     LLGE  S A  +GAALV+
Sbjct: 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVV 279

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
            +  LY G+F T +   +   A++ VSA+  ++I  L P++    +  LLGE+ +    +
Sbjct: 53  ILALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLL 112

Query: 401 GAALVL 406
           G  L+L
Sbjct: 113 GIVLIL 118

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 48/261 (18%), Positives = 84/261 (32%), Gaps = 28/261 (10%)

Query: 153 PASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRAS 212
           P  F   R ++ A+  L      R     R   + L   + +G F   L  +        
Sbjct: 17  PLYFAVFRRLIFALLLL-LPLLRRRPPLKRLLRLLLLGALQIGVFY-VLYFVAVKRLPVG 74

Query: 213 FISLFT----VIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPP--SVGDFLNF 266
             +L      + V  L D M             ++   G  +L   G+      G  L  
Sbjct: 75  EAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGL 134

Query: 267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSP 326
            S I F +  +  +R+ +    E            +   +   +L+G            P
Sbjct: 135 GSGISFALGTVLYKRLVKKEGPE------------LLQFTGWVLLLGALL-------LLP 175

Query: 327 WTWTMLWDWMVT-FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGF 385
           + W +  +       W   LY G+  T +  ++    +  V  +  +I+   EPL     
Sbjct: 176 FAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLL 235

Query: 386 AWFLLGERWSTAGWIGAALVL 406
              +LGE  S    IG AL++
Sbjct: 236 GLLILGETLSLPQLIGGALII 256

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	99.98
PLN00411	358	nodulin MtN21 family protein; Provisional	99.98
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.97
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.94
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.94
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.91
COG2962	293	RarD Predicted permeases [General function predict	99.88
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.84
KOG2765	416	consensus Predicted membrane protein [Function unk	99.74
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.66
COG2510	140	Predicted membrane protein [Function unknown]	99.51
COG2510	140	Predicted membrane protein [Function unknown]	99.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.34
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.33
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.3
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.29
KOG1580	337	consensus UDP-galactose transporter related protei	99.2
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.18
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.18
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.1
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.09
KOG2766	336	consensus Predicted membrane protein [Function unk	99.06
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.04
KOG1581	327	consensus UDP-galactose transporter related protei	98.99
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.93
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.87
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.86
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.85
PRK15430	296	putative chloramphenical resistance permease RarD;	98.83
PRK13499	345	rhamnose-proton symporter; Provisional	98.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.78
PRK11689	295	aromatic amino acid exporter; Provisional	98.71
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.71
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.69
PLN00411	358	nodulin MtN21 family protein; Provisional	98.68
PRK11272	292	putative DMT superfamily transporter inner membran	98.66
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.57
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.53
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.48
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.45
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.45
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.44
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.38
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.38
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.36
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.31
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.27
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.23
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.23
KOG1582	367	consensus UDP-galactose transporter related protei	98.22
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.17
COG2962	293	RarD Predicted permeases [General function predict	98.0
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.89
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.66
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.63
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.53
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.51
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.51
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.45
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.42
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.42
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.4
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.39
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.36
COG2076	106	EmrE Membrane transporters of cations and cationic	97.32
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	97.32
PRK11431	105	multidrug efflux system protein; Provisional	97.31
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.3
PRK11431	105	multidrug efflux system protein; Provisional	97.29
COG2076	106	EmrE Membrane transporters of cations and cationic	97.29
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.29
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.25
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.14
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.97
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.85
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.53
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.36
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.29
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.19
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.97
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.73
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.98
KOG1581	327	consensus UDP-galactose transporter related protei	94.9
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.39
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.36
PRK13499	345	rhamnose-proton symporter; Provisional	94.14
KOG1580	337	consensus UDP-galactose transporter related protei	93.93
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.79
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	92.79
KOG4831	125	consensus Unnamed protein [Function unknown]	92.67
KOG2765	416	consensus Predicted membrane protein [Function unk	92.22
KOG2922	335	consensus Uncharacterized conserved protein [Funct	89.78
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	83.84
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	82.96
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	82.55

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=9e-31  Score=253.85  Aligned_cols=265  Identities=16%  Similarity=0.130  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHHHHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALG  202 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~-~~~~~~~~~~a  202 (414)
                      .++++++++++++||.+++..|...++++|..+.++|+.++.++++++..+++. ++..++.+..+.+ ......+++.+
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRL-RQFPKRYLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcccccc-ccccHHHHHHHhHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999998876422221 2222333344433 44555667777


Q ss_pred             Hhh----cchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC------------CCchhhHHH
Q 015064          203 LLT----SDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLN  265 (414)
Q Consensus       203 l~~----~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~------------~~~~G~lla  265 (414)
                      +++    +++++++++.++.|+++.++++ ++|||+++++++|++++++|++++..++.            ....|++++
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~  161 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA  161 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence            754    6788899999999999999998 68999999999999999999999986532            123599999


Q ss_pred             HHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHH
Q 015064          266 FLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPAL  345 (414)
Q Consensus       266 l~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll  345 (414)
                      ++++++||.|.+..||..++.+   +....   ...+++...+.....+.    ...   .++         ++.|..++
T Consensus       162 l~aa~~~A~~~v~~k~~~~~~~---~~~~~---~~~~~~~l~~~~~~~~~----~~~---~~~---------~~~~~~l~  219 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYARGKN---GITLF---FILTALALWIKYFLSPQ----PAM---VFS---------LPAIIKLL  219 (295)
T ss_pred             HHHHHHHHHHHHHHhhccCCCC---chhHH---HHHHHHHHHHHHHHhcC----ccc---cCC---------HHHHHHHH
Confidence            9999999999999999876643   33332   22223333322222111    101   111         23477777


Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          346 YTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +.+ ++++++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++.
T Consensus       220 ~~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        220 LAA-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHH-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            777 478999999999999999999999999999999999999999999999999999999998654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=4.5e-30  Score=249.47  Aligned_cols=273  Identities=16%  Similarity=0.176  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH-HHHHHHHHHHhh
Q 015064          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT  205 (414)
Q Consensus       127 ~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~-~~~~~~~~al~~  205 (414)
                      .++.++++++||.++++.|...++++|.++.++|+.++++.++++..++|+   .++..+..|+... ..+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKV---PLNLLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888999999999999999999999999999999988777665533222   2333444455443 444677889988


Q ss_pred             -cchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC---C-CchhhHHHHHHHHHHHHHHHHH
Q 015064          206 -SDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHMLRT  279 (414)
Q Consensus       206 -~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~---~-~~~G~llal~aa~~~al~~v~~  279 (414)
                       .+++.++++..+.|+++.++++ ++|||+++++++|++++++|+.++..++.   . ...|++++++++++|++|.+..
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~  162 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN  162 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             5889999999999999999998 69999999999999999999999886432   1 2369999999999999999999


Q ss_pred             hHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 015064          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (414)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~  359 (414)
                      |+..++.+..+......++...+.+.........+...... .+..+         .+++.|..++++|+++++++|.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVT---------IDMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhcc---------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876544333344445555554443333322222111100 00011         124458999999999999999999


Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ++++++.++.+++.+.+++|+++.+++++++||.++..+++|+++|+.|+++.
T Consensus       233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999875

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=2.6e-30  Score=250.29  Aligned_cols=269  Identities=16%  Similarity=0.225  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc---chhhhHHHHHHHHH-HHHHHHHHH
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD---VKTRNAGIELGLWV-SLGYFVEAL  201 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~gl~~-~~~~~~~~~  201 (414)
                      -++.+++..++||.++++.|...++++|.+++++|+.++.++++++...++++   +++++.....|.++ ..++.++++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999998887665432   23344455567665 456788889


Q ss_pred             HH-hhcchhHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHhhhhhcccCC--CCchhhHHHHHHHHHHHHHHHH
Q 015064          202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHMLR  278 (414)
Q Consensus       202 al-~~~~~~~a~~l~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~~~Gv~li~~~~~--~~~~G~llal~aa~~~al~~v~  278 (414)
                      +. ++++++.++++.++.|+++.+++.++|||+++++++|++++++|+.++..++.  ....|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            98 99999999999999999999999878999999999999999999999875432  2357999999999999999999


Q ss_pred             HhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 015064          279 TERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI  358 (414)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l  358 (414)
                      .|+..++    ++.....+++..++++..+.....+...  . . .           .+++.|..+++++++++++++.+
T Consensus       169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~-----------~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERL--T-A-L-----------PTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcc--c-c-c-----------CCHHHHHHHHHHHHHHHHHHHHH
Confidence            9997643    2344567778888777766654332111  0 0 0           01234888999999999999999


Q ss_pred             HHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       359 ~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      |++++|+.++++++.+.+++|+++.+++++++||.+++.+++|+.+|+.|+++.+
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.98  E-value=6.9e-30  Score=247.79  Aligned_cols=270  Identities=13%  Similarity=0.103  Sum_probs=201.3

Q ss_pred             hccchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc------chhhhH--HHHH-HH
Q 015064          120 ASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD------VKTRNA--GIEL-GL  190 (414)
Q Consensus       120 ~~~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~--~~~~-gl  190 (414)
                      ++++.+|.+++++++++||..+++.|.. ++++|.++.++|+.++.++++++...+++.      .+.++.  .... ++
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            3456789999999999999999999986 569999999999999998887766543221      111222  1223 34


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCCchhhHHHHHHH
Q 015064          191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSA  269 (414)
Q Consensus       191 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~~~G~llal~aa  269 (414)
                      ..+.++.++++|++++|+++++++.++.|+++.++++ ++|||+++++++|++++++|++++..+++..   ..++++++
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa  158 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLA  158 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH
Confidence            4667889999999999999999999999999999998 7899999999999999999999988543322   25789999


Q ss_pred             HHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHH
Q 015064          270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (414)
Q Consensus       270 ~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv  349 (414)
                      ++|+.|.+..|+..++.. .+......++...+.....+.   ...  ........+            ..+...++.+.
T Consensus       159 ~~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~------------~~~~~~~~~~g  220 (296)
T PRK15430        159 FSFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIYLFAI---ADS--STSHMGQNP------------MSLNLLLIAAG  220 (296)
T ss_pred             HHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHH---ccC--CcccccCCc------------HHHHHHHHHHH
Confidence            999999999988754211 122222333333333221111   110  000000111            11223344434


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      +.+.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+.+
T Consensus       221 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v  282 (296)
T PRK15430        221 IVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI  282 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999877654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.98  E-value=8.9e-30  Score=251.74  Aligned_cols=277  Identities=15%  Similarity=0.123  Sum_probs=219.9

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcC----c---chhhhHHHHHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARD----D---VKTRNAGIELGLWVSL  194 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~----~---~~~~~~~~~~gl~~~~  194 (414)
                      +.+.++.++...+..+...++.|.+.+ +++|..+.++|+.+++++++++.+++++    +   ++.+.+..+.|++++.
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999997 4999999999999999999988765422    1   1222345556666655


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-H------hcccCchhHHHHHHHHHHhhhhhcccCC-----------
Q 015064          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-M------LGAIIPAHTWFGVLISALGVGMLECSGS-----------  256 (414)
Q Consensus       195 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~------l~er~~~~~~~gi~l~~~Gv~li~~~~~-----------  256 (414)
                      .+.++++|+++++++.++++.++.|+++.++++ +      +|||+++.+++|++++++|+.++...++           
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            667899999999999999999999999999998 5      4999999999999999999998774211           


Q ss_pred             --------------C-CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 015064          257 --------------P-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQD  321 (414)
Q Consensus       257 --------------~-~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  321 (414)
                                    . ...|++++++++++|++|.+..|+..+++++  ....++++...+++...+........ +.. 
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~-~~~-  246 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKN-NPS-  246 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccC-Ccc-
Confidence                          0 1348899999999999999999998887643  34556677777766665554443211 000 


Q ss_pred             CCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHH
Q 015064          322 FDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIG  401 (414)
Q Consensus       322 ~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG  401 (414)
                          .|.  ..+   +.. +..+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|
T Consensus       247 ----~~~--~~~---~~~-~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG  315 (358)
T PLN00411        247 ----VWI--IHF---DIT-LITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG  315 (358)
T ss_pred             ----cce--ecc---chH-HHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence                110  000   111 3447777765 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccC
Q 015064          402 AALVLDVQIFLPR  414 (414)
Q Consensus       402 ~~LIi~g~~l~~r  414 (414)
                      +++|++|+++.+|
T Consensus       316 ~~LIl~Gv~l~~~  328 (358)
T PLN00411        316 GILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.97  E-value=8.6e-29  Score=239.75  Aligned_cols=265  Identities=16%  Similarity=0.163  Sum_probs=214.7

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEA  200 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~--~~~~~~~~~~~~gl~~~~~~~~~~  200 (414)
                      +.+++.+++++.++|+.++.+.|.+.++++|.++.++|++++.++++++...++  .++++++..+..|+..+..+.+++
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY   89 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999887765433  234455566677887778888999


Q ss_pred             HHHhhcchhHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHhhhhhcccCC----CCchhhHHHHHHHHHHHHHH
Q 015064          201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS----PPSVGDFLNFLSAIFFGIHM  276 (414)
Q Consensus       201 ~al~~~~~~~a~~l~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~~~Gv~li~~~~~----~~~~G~llal~aa~~~al~~  276 (414)
                      ++++++|++.++++.++.|+++.+++   +||+.  +..++.++++|+.++..++.    ....|++++++++++|+.|.
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  164 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI  164 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876   35544  44567788999998874321    23469999999999999999


Q ss_pred             HHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHH
Q 015064          277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL  356 (414)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~  356 (414)
                      +..|+..++.   ++... .+....++++..+.......   ..     .++         +..|..++++|+++++++|
T Consensus       165 v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~---~~-----~~~---------~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        165 LSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG---EA-----LWH---------WSILPLGLAVAILSTALPY  223 (293)
T ss_pred             HHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC---cc-----cCC---------HHHHHHHHHHHHHHHHHHH
Confidence            9999987664   34444 34556666666555443321   00     111         1236667899999999999


Q ss_pred             HHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          357 WIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       357 ~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      .+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988753

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.97  E-value=1.7e-28  Score=233.15  Aligned_cols=255  Identities=19%  Similarity=0.254  Sum_probs=212.6

Q ss_pred             HhhhHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHH
Q 015064          137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI  214 (414)
Q Consensus       137 wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~-~~~~~~~~~~al~~~~~~~a~~l  214 (414)
                      ||.++++.|...+ ..++.+..+.|+..+.+++.++..++ ++++++++....|.+ ...++.++++|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            8999999999876 58999999999999988888776555 444455555566655 56788999999999999999999


Q ss_pred             HhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC--CCCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCc
Q 015064          215 SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF  291 (414)
Q Consensus       215 ~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~--~~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~  291 (414)
                      .++.|+++.+++. ++|||+++++++|++++++|+.++..++  +....|++++++++++|+.+.+..|+..++.+ .+.
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~  158 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PEL  158 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chH
Confidence            9999999999998 6899999999999999999999987654  23468999999999999999999999887644 233


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHH
Q 015064          292 LPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATET  371 (414)
Q Consensus       292 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~  371 (414)
                      .....+++..+.++..+.....+...  . .              +.+.|..++++++++++++|.+|++++++.+++++
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  221 (260)
T TIGR00950       159 LQFTGWVLLLGALLLLPFAWFLGPNP--Q-A--------------LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA  221 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCC--C-c--------------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            44555677788777777655433111  0 0              02347778999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 015064          372 AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQI  410 (414)
Q Consensus       372 s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~  410 (414)
                      +.+.+++|+++.+++++++||++++.+++|+.+++.|++
T Consensus       222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999864

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=1.9e-25  Score=212.11  Aligned_cols=241  Identities=15%  Similarity=0.148  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcC------cch--hhh----HHHHHHHHH
Q 015064          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVK--TRN----AGIELGLWV  192 (414)
Q Consensus       125 ~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~------~~~--~~~----~~~~~gl~~  192 (414)
                      +|++++++++++||.++++.|.+ ++++|.+++++|+.++.++++++...+++      +.+  .++    .....|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            47899999999999999999984 56999999999999999888776533221      111  111    234457777


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCCchhhHHHHHHHHH
Q 015064          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF  271 (414)
Q Consensus       193 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~~~G~llal~aa~~  271 (414)
                      +.++.++++|++++++++++++.++.|++++++++ ++|||++++++++++++++|++++..++++.   ..++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~  157 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS  157 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence            88889999999999999999999999999999998 7999999999999999999999887543222   1468999999


Q ss_pred             HHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHH
Q 015064          272 FGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFS  351 (414)
Q Consensus       272 ~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~  351 (414)
                      |++|.+..|+..++.    ........ ........+........ .....+  .           .+.|..++++|++ 
T Consensus       158 ~a~~~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~-----------~~~~~~l~~~g~~-  217 (256)
T TIGR00688       158 FTAYGLIRKALKNTD----LAGFCLET-LSLMPVAIYYLLQTDFA-TVQQTN--P-----------FPIWLLLVLAGLI-  217 (256)
T ss_pred             HHHHHHHHhhcCCCC----cchHHHHH-HHHHHHHHHHHHHhccC-cccccC--c-----------hhHHHHHHHHHHH-
Confidence            999999999976531    12221111 11111111111111111 000000  0           1237778888876 


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH
Q 015064          352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL  389 (414)
Q Consensus       352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~  389 (414)
                      +.++|.++++++|+.++++++++.|++|+++.+++.++
T Consensus       218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.94  E-value=3.7e-25  Score=213.07  Aligned_cols=267  Identities=14%  Similarity=0.134  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHh--cCcc----hh-hhHHHHHHHHHHHHHHHH
Q 015064          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RDDV----KT-RNAGIELGLWVSLGYFVE  199 (414)
Q Consensus       127 ~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~----~~-~~~~~~~gl~~~~~~~~~  199 (414)
                      +++.++++++|+...+..|...++-++.  .+++.....++++++..++  ++.+    +. +...+..++....++.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999766654443  4777777777777776653  2111    12 222333455677888999


Q ss_pred             HHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC--CCchhhHHHHHHHHHHHHHH
Q 015064          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM  276 (414)
Q Consensus       200 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~--~~~~G~llal~aa~~~al~~  276 (414)
                      ++|+++++++.++.+.++.|+++.++++ ++|||+++++++|+++++.|++++..++.  ....|+.++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999998 69999999999999999999999876532  23468889999999999999


Q ss_pred             HHHhHhhhccCCC-CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHH
Q 015064          277 LRTERISRSTKKE-NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC  355 (414)
Q Consensus       277 v~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~  355 (414)
                      +..|+..++.++. +......+.+...++...+.....+. ....   ..            +..++.+++.+++.+.++
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~------------~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMF---PY------------ARQILPSATLGGLMIGGA  224 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchh---hh------------HHHHHHHHHHHHHHHHHH
Confidence            9988865443321 11222223322221221111111111 0000   00            112556788899999999


Q ss_pred             HHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       356 ~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      |.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.94  E-value=2.3e-24  Score=213.56  Aligned_cols=281  Identities=10%  Similarity=0.065  Sum_probs=215.3

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHHHHHHh--c-Cc----chhhhHHHHHHHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWA--R-DD----VKTRNAGIELGLWVSLG  195 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~--~-~~----~~~~~~~~~~gl~~~~~  195 (414)
                      .+..++.+.-..+=.......|.+.+.++ |..+.++|++++.+++.++...+  + ++    ++.++..+..|+++...
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~  127 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV  127 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            44455555555555666778899999999 99999999999987765544321  1 11    12345667788888777


Q ss_pred             HHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCC-chhhHHHHHHHHHHH
Q 015064          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFG  273 (414)
Q Consensus       196 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~-~~G~llal~aa~~~a  273 (414)
                      +...+.|+++++++.++++..+.|+++++++. ++|||++++++++++++++|+.+....+..+ ..|++++++++++++
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a  207 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS  207 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence            77788999999999999999999999999998 7999999999999999999999988655444 469999999999999


Q ss_pred             HHHHHHhHhhhccC----CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCC-C-CCcchhhhhccccchhhHHHHHHH
Q 015064          274 IHMLRTERISRSTK----KENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-D-QSPWTWTMLWDWMVTFPWVPALYT  347 (414)
Q Consensus       274 l~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~w~~~~~~~~ll~l  347 (414)
                      ++.+..|+..++.+    +.++.....++...++++.+|+....+........ . ...+      +   ...+..+++ 
T Consensus       208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~------~---~~~~~~~l~-  277 (350)
T PTZ00343        208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM------T---NYTKGIIIF-  277 (350)
T ss_pred             HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc------c---ccchHHHHH-
Confidence            99999999876543    24455566666788888888876644321100000 0 0000      0   001233444 


Q ss_pred             HHHHHHHHHHHHHH----HhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          348 GIFSTGICLWIEIA----AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       348 gv~~~~~~~~l~~~----al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                      .++.+++.+.+|+.    +++++++...++..+++|+++++++++++||++++.+++|++++++|+++.++
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            35556888888885    99999999999999999999999999999999999999999999999988653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.94  E-value=6.6e-25  Score=213.47  Aligned_cols=271  Identities=11%  Similarity=0.031  Sum_probs=205.6

Q ss_pred             hhhHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHHHHHH--hcC---cchhhhHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 015064          138 ASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFW--ARD---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA  211 (414)
Q Consensus       138 g~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~--~~~---~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a  211 (414)
                      ....+..|.+.++ -.|..+++.|+.++.+.+.+....  +++   +++++++.+..|++....+.+.++|+++++++.+
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~   94 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT   94 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3344678999987 679999999999988877665211  111   3456667788899988888999999999999999


Q ss_pred             HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCC-chhhHHHHHHHHHHHHHHHHHhHhhhccCCC
Q 015064          212 SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKE  289 (414)
Q Consensus       212 ~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~-~~G~llal~aa~~~al~~v~~~~~~~~~~~~  289 (414)
                      +++.++.|++++++++ ++|||++++++++++++++|+.+....+... ..|++++++++++|++|.+..||..++. +.
T Consensus        95 ~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~  173 (302)
T TIGR00817        95 HTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SL  173 (302)
T ss_pred             HHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CC
Confidence            9999999999999998 6899999999999999999998876444333 4599999999999999999999987632 25


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 015064          290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSAT  369 (414)
Q Consensus       290 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~  369 (414)
                      |+...+.++...+.+...|.....+...... .+...+.+    .+.....+...+..+..+....+.++++++++.+|+
T Consensus       174 ~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~  248 (302)
T TIGR00817       174 DKTNLYAYISIMSLFLLSPPAFITEGPPFLP-HGFMQAIS----GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL  248 (302)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHcchHHHH-HHHHHhhc----ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            6788899999999988888766543211100 00000000    000001122222333323333335666899999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          370 ETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       370 ~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                      +.++..+++|+++++++++++||+++..+++|++++++|+++.+|
T Consensus       249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988653

specificities overlap.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.94  E-value=7.6e-28  Score=218.72  Aligned_cols=269  Identities=16%  Similarity=0.156  Sum_probs=214.8

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhc----CcchhhhHHHHHHHHHHHHHH
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLWVSLGYF  197 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~----~~~~~~~~~~~~gl~~~~~~~  197 (414)
                      ++.+|.++.-++ .++.+..+..+...+ .+|.+..-.|+++-.++..+-...++    .+...|++++++|+.++.+..
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e-~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLE-NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhc-cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            445677777777 444444454444444 69999999997776666665544443    345667888999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCC---------------Cchh
Q 015064          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSP---------------PSVG  261 (414)
Q Consensus       198 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~---------------~~~G  261 (414)
                      +.|||++|.+.++|+++.++.|.|+.++++ ++|||.++.+.++..+.+.||+++++|...               ...|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            999999999999999999999999999999 799999999999999999999999977421               2578


Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhH
Q 015064          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (414)
Q Consensus       262 ~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  341 (414)
                      .+.++.++++.+.-+++.|+++++.+   ......|..+++.+..+......+. ...+ ..              .++|
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h---~~msvsyf~~i~lV~s~I~~~~ig~-~~lP-~c--------------gkdr  253 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAH---AIMSVSYFSLITLVVSLIGCASIGA-VQLP-HC--------------GKDR  253 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhcccc---EEEEehHHHHHHHHHHHHHHhhccc-eecC-cc--------------ccce
Confidence            89999999999999999999998854   4455556566666665544333321 1111 11              2347


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +.++.+|+++ .+++.+.++++|+..+++++++.+++.+++++++.++|||.|++++|.|+++|+.+.+++
T Consensus       254 ~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  254 WLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             EEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            7788889875 668999999999999999999999999999999999999999999999999999988875

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=2.9e-22  Score=192.18  Aligned_cols=269  Identities=25%  Similarity=0.314  Sum_probs=211.2

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhh--hHHHHH-HHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTR--NAGIEL-GLWVSLGY  196 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~--~~~~~~--~~~~~~-gl~~~~~~  196 (414)
                      ...+....++..+.|+......|...++ .++....+.|...+.+...+...+++  ..+...  ++.... ++......
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            3467788888889999999999999887 77777778899998888554444332  122221  233333 44567788


Q ss_pred             HHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-H-hcccCchhHHHHHHHHHHhhhhhcccCCCC----chhhHHHHHHHH
Q 015064          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-M-LGAIIPAHTWFGVLISALGVGMLECSGSPP----SVGDFLNFLSAI  270 (414)
Q Consensus       197 ~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~-l~er~~~~~~~gi~l~~~Gv~li~~~~~~~----~~G~llal~aa~  270 (414)
                      .+++.++++++++.++.+.++.|+++.+++. + +|||+++++++++++++.|++++..++...    ..|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996 5 599999999999999999999999876543    479999999999


Q ss_pred             HHHHHHHHHhHhhhccCCCCchhHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHH
Q 015064          271 FFGIHMLRTERISRSTKKENFLPLLG-YEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (414)
Q Consensus       271 ~~al~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv  349 (414)
                      +++++.+..|+.. +   .++..... +++........+......  .  .+.   .           ...|..+.+.|+
T Consensus       165 ~~a~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~---~-----------~~~~~~~~~~g~  222 (292)
T COG0697         165 LWALYTALVKRLS-R---LGPVTLALLLQLLLALLLLLLFFLSGF--G--API---L-----------SRAWLLLLYLGV  222 (292)
T ss_pred             HHHHHHHHHHHhc-C---CChHHHHHHHHHHHHHHHHHHHHhccc--c--ccC---C-----------HHHHHHHHHHHH
Confidence            9999999999887 3   33444444 333322222222111111  1  000   0           224788899999


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      +++++++.++++++++.++..++++.+++|+++.+++++++||.++..+++|+.+++.|+++..
T Consensus       223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.91  E-value=3.3e-22  Score=181.05  Aligned_cols=260  Identities=20%  Similarity=0.174  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHHHHHHHHHH
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD--DVKTRNAGIELGLWVSLGYFVEALGL  203 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~~~~~~~~~gl~~~~~~~~~~~al  203 (414)
                      .++.++.+.+.--....+.|.+...++|...+++|..++.++++++++..|+  .+++++..+..|+.....+.+||.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777877777778899999999999999999999999999998876554  35677888888999999999999999


Q ss_pred             hhcchhHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHhhhhhcccC----CCCchhhHHHHHHHHHHHHHHHHH
Q 015064          204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRT  279 (414)
Q Consensus       204 ~~~~~~~a~~l~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~~~Gv~li~~~~----~~~~~G~llal~aa~~~al~~v~~  279 (414)
                      +++|.+.+..+.++-|+.+++++     ..+.++.+-+.+++.|+.++.-.+    ..+..|..+++.++.||++|.+..
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~-----sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLS-----SRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHh-----ccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            99999999999999999888873     334566777777888888877433    346899999999999999999999


Q ss_pred             hHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 015064          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (414)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~  359 (414)
                      +|..+..   +...-+...+.++.++.+|+......+.-.                 +|......+.++++++.+.|.+-
T Consensus       168 ~r~g~~~---~g~~g~a~gm~vAaviv~Pig~~~ag~~l~-----------------~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         168 QRAGRAE---HGTAGVAVGMLVAALIVLPIGAAQAGPALF-----------------SPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             chhcccC---CCchHHHHHHHHHHHHHhhhhhhhcchhhc-----------------ChHHHHHHHHHHHHhcccchHHH
Confidence            9998643   335556677888888888887654322111                 12336667888999999999999


Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 015064          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQI  410 (414)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~  410 (414)
                      ..++++.+....+.+.++||.++.+.|++++||.+|+.||.|+++|+.+..
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998765

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.88  E-value=1.1e-19  Score=169.13  Aligned_cols=266  Identities=17%  Similarity=0.187  Sum_probs=210.5

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcc---------hhhhHHHHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV---------KTRNAGIELGLWVS  193 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~---------~~~~~~~~~gl~~~  193 (414)
                      ..+|+++.+.+.++||..+...|.+.+ +++.++...|.+.+..+++.+....|+.+         +......+.++...
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLEP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            357999999999999999999999765 99999999999999988876665543321         12222344477788


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCCchhhHHHHHHHHHH
Q 015064          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF  272 (414)
Q Consensus       194 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~~~G~llal~aa~~~  272 (414)
                      .++..|.+|..+...-++++-.+..|++..+++. ++|||+++.|+++++++.+||.......++.+   ..++.=+++|
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp---wval~la~sf  160 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP---WVALALALSF  160 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Confidence            8999999999999999999999999999999998 79999999999999999999999876533221   4677778999


Q ss_pred             HHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHH
Q 015064          273 GIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFST  352 (414)
Q Consensus       273 al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~  352 (414)
                      +.|...-|+..     .|..+-.+...+.-..+.+.+........+  ......           +..|.+++..|.+ +
T Consensus       161 ~~Ygl~RK~~~-----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~~~-----------~~~~~LLv~aG~v-T  221 (293)
T COG2962         161 GLYGLLRKKLK-----VDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQNA-----------NSLWLLLVLAGLV-T  221 (293)
T ss_pred             HHHHHHHHhcC-----CchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhcCC-----------chHHHHHHHhhHH-H
Confidence            99999777653     455666666666666665555544432221  011011           1225566666664 7


Q ss_pred             HHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          353 GICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       353 ~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      .++..++..|-|+++-+..+.++|.+|..-.+++.+++||+++..+++..++|..|.++
T Consensus       222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l  280 (293)
T COG2962         222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALAL  280 (293)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999998875

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.87  E-value=1.3e-19  Score=175.12  Aligned_cols=258  Identities=13%  Similarity=0.114  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchh----hhHHHHHHHHHHHHHHHHHH
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT----RNAGIELGLWVSLGYFVEAL  201 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~----~~~~~~~gl~~~~~~~~~~~  201 (414)
                      ++++.++++++||+..+..|... +.++.++.  |..++.+++..+....+.+++.    ....+..|+....++.+++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            47889999999999999999876 67787775  7877777776554443332222    23344456667788899999


Q ss_pred             HHhhcchhHHHHHHh-hHHHHHHHHHH-HhcccCchhH----HHHHHHHHHhhhhhcccCC---------CCchhhHHHH
Q 015064          202 GLLTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF  266 (414)
Q Consensus       202 al~~~~~~~a~~l~~-~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~~~Gv~li~~~~~---------~~~~G~llal  266 (414)
                      +.++++.+.+..+.. +.++++.+.+. ++|||.++++    .+|+++.++|++++...+.         ....|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            999999999988888 88888899998 6999999999    9999999999999875321         1258999999


Q ss_pred             HHHHHHHHHHHHHhHhhhccCCCCchhH---HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHH
Q 015064          267 LSAIFFGIHMLRTERISRSTKKENFLPL---LGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVP  343 (414)
Q Consensus       267 ~aa~~~al~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  343 (414)
                      +++++|+.|.+..|+..  +   ++...   ..+.++.++++..+..  .   ..      .++.         ++.++.
T Consensus       159 ~sg~~y~~~~~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~~~~~--~---~~------~~~~---------~~~~~~  213 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAFG--V---DGLSVLLPQAIGMVIGGIIFNLGH--I---LA------KPLK---------KYAILL  213 (290)
T ss_pred             HHHHHHHHHHHHHHHcC--C---CcceehhHHHHHHHHHHHHHHHHH--h---cc------cchH---------HHHHHH
Confidence            99999999999999762  3   34445   3333333443333221  0   00      0110         122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhH----HHHHHHHHhhhcc
Q 015064          344 ALYTGIFSTGICLWIEIAAMR-DVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGW----IGAALVLDVQIFL  412 (414)
Q Consensus       344 ll~lgv~~~~~~~~l~~~al~-~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~----iG~~LIi~g~~l~  412 (414)
                      .+..|++ .++++.+|..+.+ +.+++.++.+.+++|+.+.+++++++||..++.++    +|.++|+.|+++.
T Consensus       214 ~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~  286 (290)
T TIGR00776       214 NILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL  286 (290)
T ss_pred             HHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence            4448887 6999999999999 99999999999999999999999999999999999    9999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.84  E-value=1.8e-18  Score=168.20  Aligned_cols=273  Identities=16%  Similarity=0.158  Sum_probs=211.1

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhc-CC-HHHHHHHHHHHHHHHHHHHHHHhcCc-------chhhhHHHHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MH-PASFCAVRFVMSAIPFLPFVFWARDD-------VKTRNAGIELGLWVS  193 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~-~~-p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~~~~gl~~~  193 (414)
                      .++.+++.=+.+++-..+...+..+.+. .+ |....++-+..-.++..++...|++.       +++++++++++++..
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv   90 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV   90 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence            3566666666777777778887777653 22 55555666655555555555544332       345667788899999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC----------CCCchhh
Q 015064          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVGD  262 (414)
Q Consensus       194 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~----------~~~~~G~  262 (414)
                      .++++.+.|++|++.+.++++..+.-+++.++++ ++|||.++.|++|+++++.|++++...|          .....|+
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD  170 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD  170 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence            9999999999999999999999999999999999 7999999999999999999999987542          1246999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHH
Q 015064          263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV  342 (414)
Q Consensus       263 llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  342 (414)
                      +++++++++||++.+..++..++.   +......+..+.+.++..+.....+. .+...   ..|++         +.+.
T Consensus       171 ll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~~---~~w~~---------~~~~  234 (334)
T PF06027_consen  171 LLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILER-SGIES---IHWTS---------QVIG  234 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheeh-hhhhc---cCCCh---------hhHH
Confidence            999999999999999999998873   45677777777777777665554432 12211   12221         2233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      . +....++..+-|.+....++..+|+...+-..+..+++++++++++|+.+++..++|.++|++|.++.
T Consensus       235 ~-~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy  303 (334)
T PF06027_consen  235 L-LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY  303 (334)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence            3 23334456667888899999999999999999999999999999999999999999999999999874

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.74  E-value=7.6e-17  Score=153.91  Aligned_cols=280  Identities=14%  Similarity=0.193  Sum_probs=217.9

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHHHHH----Hh----c---C----------
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEIM---HPASFCAVRFVMSAIPFLPFVF----WA----R---D----------  177 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~~---~p~~~~~~R~~~a~l~ll~~~~----~~----~---~----------  177 (414)
                      +...|+.++++..++|-.+.-+.+.+.++-   .|+.+++.....-.+-+.++..    ++    |   .          
T Consensus        11 r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~   90 (416)
T KOG2765|consen   11 RWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADA   90 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhh
Confidence            356899999999999999999999888753   4887777665544444443221    00    0   0          


Q ss_pred             -------------------------------c------------------chhh---------------hHHHHHHHHHH
Q 015064          178 -------------------------------D------------------VKTR---------------NAGIELGLWVS  193 (414)
Q Consensus       178 -------------------------------~------------------~~~~---------------~~~~~~gl~~~  193 (414)
                                                     +                  .+.+               +..+....+.+
T Consensus        91 e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lWF  170 (416)
T KOG2765|consen   91 EGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLWF  170 (416)
T ss_pred             hccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence                                           0                  0001               11234456678


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC---------CCchhhH
Q 015064          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---------PPSVGDF  263 (414)
Q Consensus       194 ~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~---------~~~~G~l  263 (414)
                      .+++.+..|+.+++++..+++..++-+|+..++. +-.||++..+.+++++++.||+++...+.         ....|++
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~l  250 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNL  250 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHH
Confidence            9999999999999999999999999999999998 57899999999999999999999987632         2369999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHH
Q 015064          264 LNFLSAIFFGIHMLRTERISRST-KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV  342 (414)
Q Consensus       264 lal~aa~~~al~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  342 (414)
                      +++++|+.||+|.++.||...+. +..|.-.+..+..+...++.+|..++........ .+.+           +.....
T Consensus       251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~-F~lP-----------~~~q~~  318 (416)
T KOG2765|consen  251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER-FELP-----------SSTQFS  318 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc-ccCC-----------CCceeE
Confidence            99999999999999999987766 3577666666666777777776665554332111 1111           111245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      .++..+.++++++-.+|.+|+-.+++..+++-..++.+.+++.+.++-|..+++.+++|...|++|.+.++
T Consensus       319 ~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  319 LVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVN  389 (416)
T ss_pred             eeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhee
Confidence            57788899999999999999999999999999999999999999999999999999999999999988764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.66  E-value=7.7e-14  Score=135.87  Aligned_cols=248  Identities=17%  Similarity=0.178  Sum_probs=200.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-
Q 015064          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (414)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~---~~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-  227 (414)
                      .|..+++..+....+...+.....+   +++...+.++..+++..++..+.+.|++|+|...-.++....|+++++++. 
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            3888999998888877776655443   234456677888999999999999999999999999999999999999998 


Q ss_pred             HhcccCchhHHHHHHHHHHhhhhhcccCCC-----------CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHH
Q 015064          228 MLGAIIPAHTWFGVLISALGVGMLECSGSP-----------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG  296 (414)
Q Consensus       228 ~l~er~~~~~~~gi~l~~~Gv~li~~~~~~-----------~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~  296 (414)
                      ++|+|.++++++++++..+|+++....+..           ...|+++.+++.++.|...+..++..++++ .++...++
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG-KSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence            799999999999999999999998754321           123999999999999999999999988876 57788899


Q ss_pred             HHHHHHHHHHHHHHHH--hccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 015064          297 YEICVVALLSTIWVLV--GGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII  374 (414)
Q Consensus       297 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~  374 (414)
                      +....+.+...+....  .+...+..     ..      -..+|..+..++...+ +..+++......+++.++...+++
T Consensus       190 y~n~~~~~~~~~~~~~l~~~~~~~~~-----~f------~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v  257 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFLLPTGEFRSAI-----RF------ISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIV  257 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHH-----HH------HHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhH
Confidence            9999888887776666  22211100     00      0112333455555454 456677777888999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       375 ~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ..+.-+++++++++++|+++++.+|+|.++++.|+.+.
T Consensus       258 ~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  258 TTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999998764

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.51  E-value=1.6e-13  Score=112.30  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcC-------cchhhhHHHHHHHHHHHHHH
Q 015064          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-------DVKTRNAGIELGLWVSLGYF  197 (414)
Q Consensus       125 ~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~-------~~~~~~~~~~~gl~~~~~~~  197 (414)
                      ...++.++++++++...++.|...++++|...+++|..+..++++.++...++       ..|.+....+.|+....++.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999998888776533       24455566677999999999


Q ss_pred             HHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       198 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      +||+|++...++..+.+..++|+++.++++ ++|||++..+++|+++..+|++++..
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999 79999999999999999999988753

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.46  E-value=9.1e-13  Score=107.97  Aligned_cols=136  Identities=18%  Similarity=0.276  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhh
Q 015064          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (414)
Q Consensus       261 G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  340 (414)
                      -.++++++|+++++..++.|--.++   .||...++.+.++..+.+..+....+......+.+              ++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~--------------~k~   66 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG--------------PKS   66 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC--------------cce
Confidence            3578999999999999999987765   66777788888887777777766666443333222              344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                      |..++..| +.++++..+|++|++..+++++.++.-++|+++++++++++||+++..+++|+.+|+.|.++.+|
T Consensus        67 ~lflilSG-la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          67 WLFLILSG-LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             ehhhhHHH-HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            66666656 67899999999999999999999999999999999999999999999999999999999998765

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.34  E-value=2.4e-10  Score=107.52  Aligned_cols=211  Identities=15%  Similarity=0.144  Sum_probs=154.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC--
Q 015064          180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--  256 (414)
Q Consensus       180 ~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~--  256 (414)
                      ++..+..+-+++..+.+.+.++++++++++.-.++..+..+++++++. ++|+|++++||+++++.++|+.++..++.  
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            334445556788889999999999999999999999999999999998 79999999999999999999999874311  


Q ss_pred             ----------------CCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 015064          257 ----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQ  320 (414)
Q Consensus       257 ----------------~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  320 (414)
                                      ....|.++.+.++++-++..++.++..|+.+ .+...-.....+.+.+..++...... ..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~  172 (244)
T PF04142_consen   95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSD-GSAIS  172 (244)
T ss_pred             cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccc-ccccc
Confidence                            1248899999999999999999999988755 44444444444444444444433322 11111


Q ss_pred             CCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHH
Q 015064          321 DFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI  400 (414)
Q Consensus       321 ~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~i  400 (414)
                      +..  -      ++..++..|..+.     ...++=++....+|+.+.-.=+....+..+++.++++++||.+++....+
T Consensus       173 ~~g--~------f~G~~~~~~~~i~-----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l  239 (244)
T PF04142_consen  173 ESG--F------FHGYSWWVWIVIF-----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL  239 (244)
T ss_pred             cCC--c------hhhcchHHHHHHH-----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence            111  0      1111111233222     33333345566789999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 015064          401 GAALV  405 (414)
Q Consensus       401 G~~LI  405 (414)
                      |..++
T Consensus       240 g~~~V  244 (244)
T PF04142_consen  240 GAALV  244 (244)
T ss_pred             heecC
Confidence            98764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.33  E-value=8.4e-12  Score=104.28  Aligned_cols=125  Identities=20%  Similarity=0.352  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHH
Q 015064          270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (414)
Q Consensus       270 ~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv  349 (414)
                      ++||.+.+..|+..++   .|+....++++..+++ .++......... ....              +++.+...++.++
T Consensus         1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~   61 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNL--------------SPRQWLWLLFLGL   61 (126)
T ss_pred             ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC--------------ChhhhhhhhHhhc
Confidence            4689999999999887   5678999999999987 555555544322 1111              1233677888899


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      +++.+++.++++++++.+++.++++.+++|+++.++++++++|++++.+++|+.++++|+++.+
T Consensus        62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.30  E-value=1.2e-11  Score=119.31  Aligned_cols=263  Identities=14%  Similarity=0.138  Sum_probs=203.5

Q ss_pred             hHHHHHHhhh--cC-CHHHHHHHHHHHHHHHHHHHHHHhcCc------chhhhHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 015064          140 DIPILKAAEE--IM-HPASFCAVRFVMSAIPFLPFVFWARDD------VKTRNAGIELGLWVSLGYFVEALGLLTSDAGR  210 (414)
Q Consensus       140 ~~~~~k~~~~--~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~  210 (414)
                      .....|.+.+  +. -|..++..+...+.+..+.....+-.+      +..++..+.+|+...++..+-+.|+++.+++.
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence            3345677777  43 377888887777777766555443222      13455677789999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCC-chhhHHHHHHHHHHHHHHHHHhHhhh-ccC
Q 015064          211 ASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISR-STK  287 (414)
Q Consensus       211 a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~-~~G~llal~aa~~~al~~v~~~~~~~-~~~  287 (414)
                      ...+-.+.|.++.++++ +.+|+.+...++.++....||.+....+..+ ..|...++++.+..+...++.++..+ +..
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~  191 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGE  191 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999 6899999999999999999999988876644 69999999999999999999999874 223


Q ss_pred             CCCchhHHHHHHHHHHHHHH-HHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015064          288 KENFLPLLGYEICVVALLST-IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDV  366 (414)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~  366 (414)
                      ..|+..+..++.-.+.+.++ |+....++... .......|.+.          ...++... ++...-....+..+.++
T Consensus       192 ~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~s-v~~f~~Nls~f~~ig~t  259 (316)
T KOG1441|consen  192 SLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT----------FLILLLNS-VLAFLLNLSAFLVIGRT  259 (316)
T ss_pred             ccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh----------hHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            48889999998888888888 66555543222 10011122211          22233333 33344455677889999


Q ss_pred             ChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          367 SATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       367 ~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                      +|...++...+.-++.++.++++|+++.++.+..|.++-+.|+++.+|
T Consensus       260 SalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  260 SALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             CchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.29  E-value=3e-11  Score=100.86  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=97.7

Q ss_pred             HHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhc-C-----cchhhhHHHHHHHH-HHHHHHHHHHHHhhcc
Q 015064          135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-D-----DVKTRNAGIELGLW-VSLGYFVEALGLLTSD  207 (414)
Q Consensus       135 ~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~-~-----~~~~~~~~~~~gl~-~~~~~~~~~~al~~~~  207 (414)
                      ++||...++.|...++.||.+..++|+..+.+ ++++....+ +     +.+.+......|+. ...++.++++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            46999999999999999999999999999997 444433322 1     12233445555666 5788999999999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhc
Q 015064          208 AGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (414)
Q Consensus       208 ~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~  252 (414)
                      ++.++.+..+.|+++.++++ ++||++++.+++|+++++.|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 7999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.3e-10  Score=103.32  Aligned_cols=244  Identities=12%  Similarity=0.095  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-Hh
Q 015064          154 ASFCAVRFVMSAIPFLPFVFWARDD---VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML  229 (414)
Q Consensus       154 ~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l  229 (414)
                      ..++|+....-.++.=+++..+++.   ...-+.+...++...+++...+.|+++.|--...+--+.-|+=+++++. +.
T Consensus        54 laLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~  133 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFA  133 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhh
Confidence            3445555555544443333333222   2223344555666677888889999999999999999999999999998 78


Q ss_pred             cccCchhHHHHHHHHHHhhhhhcccC--------CCCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHH
Q 015064          230 GAIIPAHTWFGVLISALGVGMLECSG--------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICV  301 (414)
Q Consensus       230 ~er~~~~~~~gi~l~~~Gv~li~~~~--------~~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~  301 (414)
                      +++.++.+...++..++||.+....+        .....|.++.+++-..-++......|.++.+.+ ....++++..+.
T Consensus       134 ~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~Nlw  212 (337)
T KOG1580|consen  134 HKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLW  212 (337)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHH
Confidence            99999999999999999999988542        235799999999999999988888888877663 456777787877


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHH
Q 015064          302 VALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLW  381 (414)
Q Consensus       302 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~  381 (414)
                      +.+.+..-.++.+...+..     .+..      -.|..|+-+..+++ ++.+++++.+.-+...+|..-+++..+.-.|
T Consensus       213 StL~Lg~g~lfTGElweF~-----yF~~------RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfF  280 (337)
T KOG1580|consen  213 STLYLGAGLLFTGELWEFF-----YFVQ------RHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFF  280 (337)
T ss_pred             HHHHhhhhheehhhHHHHH-----HHHH------hccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHH
Confidence            7777665554444221111     1111      12455777777777 5688999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 015064          382 GAGFAWFLLGERWSTAGWIGAALVLDVQI  410 (414)
Q Consensus       382 a~l~~~~~lge~~s~~~~iG~~LIi~g~~  410 (414)
                      +++.+.++++++++..||+|..+++.+..
T Consensus       281 Til~SVllf~npls~rQwlgtvlVF~aL~  309 (337)
T KOG1580|consen  281 TILISVLLFNNPLSGRQWLGTVLVFSALT  309 (337)
T ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998764

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6e-08  Score=93.47  Aligned_cols=273  Identities=12%  Similarity=0.104  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhh-c---CCHHHHHHHHHHHHHHHHHHHHHHhcCc-----ch-----------hhhH
Q 015064          125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWARDD-----VK-----------TRNA  184 (414)
Q Consensus       125 ~g~l~~lla~~~wg~~~~~~k~~~~-~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~-----------~~~~  184 (414)
                      .-.+.+++..+.++...+..|+... +   +.|...++.--.+-.++...+++++.+.     .+           ...+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            3456677778888888888888764 2   6688888877777777666666554211     00           1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc---CC----
Q 015064          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---GS----  256 (414)
Q Consensus       185 ~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~---~~----  256 (414)
                      ..+-+++..+.+-++|.++.+.+++...+...+-.+.++++.. ++++|+++++|.++++.+.|+.++-.+   +.    
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            2333556667777999999999999999999999999999998 799999999999999999999999832   11    


Q ss_pred             -----CCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhh
Q 015064          257 -----PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTM  331 (414)
Q Consensus       257 -----~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (414)
                           ....|....+.++..-+...++.++..++.+ .+...-..-....+.+..+...... ..+...        |.+
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~--------~~g  244 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQ-DGEAIN--------EYG  244 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhc-cccccc--------cCC
Confidence                 1358899999999999999999999987644 2322222222233333333222222 111111        223


Q ss_pred             hccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          332 LWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       332 ~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      .+...+...|...+..++.+-.+     ..-+|+.+--.=+....+..+++.+.++.++|-.||....+|..+++.++.+
T Consensus       245 ff~G~s~~vw~vVl~~a~gGLlv-----s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l  319 (345)
T KOG2234|consen  245 FFYGYSSIVWLVVLLNAVGGLLV-----SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL  319 (345)
T ss_pred             ccccccHHHHHHHHHHhccchhH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence            33333333466555555544333     3457777777777788888999999999999999999999999999999876


Q ss_pred             c
Q 015064          412 L  412 (414)
Q Consensus       412 ~  412 (414)
                      -
T Consensus       320 Y  320 (345)
T KOG2234|consen  320 Y  320 (345)
T ss_pred             h
Confidence            4

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=6.6e-09  Score=98.65  Aligned_cols=272  Identities=14%  Similarity=0.084  Sum_probs=207.0

Q ss_pred             HHHHHHHHhhhHHHHHHhhhcCC-HHHHH--HHHHHHHHHHHHHHHHHh-----cCcchhhhHHHHHHHHHHHHHHHHHH
Q 015064          130 LNVITIVYASDIPILKAAEEIMH-PASFC--AVRFVMSAIPFLPFVFWA-----RDDVKTRNAGIELGLWVSLGYFVEAL  201 (414)
Q Consensus       130 ~lla~~~wg~~~~~~k~~~~~~~-p~~~~--~~R~~~a~l~ll~~~~~~-----~~~~~~~~~~~~~gl~~~~~~~~~~~  201 (414)
                      .+.-++.=-.+.+..|.+....+ |..+.  ..+.+...+.+...-+.+     .-+++..|+++...++..+....-..
T Consensus        17 a~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~   96 (314)
T KOG1444|consen   17 ALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSK   96 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccc
Confidence            33333333445567788876533 33333  366666655554433222     12355667788888888888888889


Q ss_pred             HHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCCCCc-hhhHHHHHHHHHHHHHHHHH
Q 015064          202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPS-VGDFLNFLSAIFFGIHMLRT  279 (414)
Q Consensus       202 al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~~~~-~G~llal~aa~~~al~~v~~  279 (414)
                      +++|++....+++-...|+++++... ++|.|++...+.+++...+|......++..+. .|+.+++...+.-+.+.+..
T Consensus        97 slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~  176 (314)
T KOG1444|consen   97 SLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYV  176 (314)
T ss_pred             cccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 79999999999999999999999888876654 58999999999999999999


Q ss_pred             hHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 015064          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (414)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~  359 (414)
                      |+..+..+ .+...+++|..+.....+.....+.+..+.... .        .-+|..+..|..++..++++.++.| +-
T Consensus       177 kk~vd~~~-l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~-~--------~~~~~~~~~~~~~~lScv~gf~isy-~s  245 (314)
T KOG1444|consen  177 KKSVDSAN-LNKFGLVFYNNLLSLPPLLILSFITGELDALSL-N--------FDNWSDSSVLVVMLLSCVMGFGISY-TS  245 (314)
T ss_pred             HHhhcccc-ccceeEEeehhHHHHHHHHHHHHHhcchHHHHh-h--------cccccchhHHHHHHHHHHHHHHHHH-HH
Confidence            99876544 566778888888888887777766654321110 0        0135566778889999999888888 66


Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ....+..+++..+++....-....+.+.+++|++.++..++|..+=+.|.++.
T Consensus       246 ~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y  298 (314)
T KOG1444|consen  246 FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY  298 (314)
T ss_pred             HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence            78889999999999997777778888888888899999999999888776653

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.10  E-value=1.3e-08  Score=94.35  Aligned_cols=272  Identities=17%  Similarity=0.171  Sum_probs=187.9

Q ss_pred             HhhhHHHHHHhhh----c----CCHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------chhh-hHHHHHHH
Q 015064          137 YASDIPILKAAEE----I----MHPASFCAVRFVMSAIPFLPFVFWARDD-----------------VKTR-NAGIELGL  190 (414)
Q Consensus       137 wg~~~~~~k~~~~----~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----------------~~~~-~~~~~~gl  190 (414)
                      =+.+.+..|++-+    +    -+|+.....-++.-++.+..+...+++.                 .+.. ...+.-++
T Consensus        15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal   94 (372)
T KOG3912|consen   15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL   94 (372)
T ss_pred             ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHH
Confidence            3455667776643    2    3466666666666656666555544211                 0111 11223477


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC-----------CCC
Q 015064          191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG-----------SPP  258 (414)
Q Consensus       191 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~-----------~~~  258 (414)
                      +-..+..+.|.++.+++++.-.++.....+|+.+++. +++++++.++|+|+....+|++++...+           +..
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i  174 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI  174 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence            7888889999999999999999999999999999998 8999999999999999999999987432           123


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCC---CCCCCCCC-cchhhhhcc
Q 015064          259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFD---SSQDFDQS-PWTWTMLWD  334 (414)
Q Consensus       259 ~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~  334 (414)
                      ..|+++.+++-+.-|+.++.-+|..++.+ ++|.....|+.+.+.++....+....-..   .....+.. -.+|...|.
T Consensus       175 itGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~  253 (372)
T KOG3912|consen  175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA  253 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence            68999999999999999999999998876 89999999999998666544433322111   11111111 112222111


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHH----HHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhh
Q 015064          335 WMVTFPWVPALYTGIFSTGICLWIEI----AAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQI  410 (414)
Q Consensus       335 w~~~~~~~~ll~lgv~~~~~~~~l~~----~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~  410 (414)
                      -.....   .+++.+.+..++..+++    .-.|..+++.-.++..+...+--+++.....|.+...|+.|.++.+.|++
T Consensus       254 ~~~e~p---~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~  330 (372)
T KOG3912|consen  254 ALQESP---SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII  330 (372)
T ss_pred             HhcCCc---hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111   22333333333332222    33567788888899999998888899999999999999999999999987


Q ss_pred             cc
Q 015064          411 FL  412 (414)
Q Consensus       411 l~  412 (414)
                      +.
T Consensus       331 lY  332 (372)
T KOG3912|consen  331 LY  332 (372)
T ss_pred             HH
Confidence            64

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.09  E-value=1.4e-09  Score=90.21  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCcc--------hhhhHHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-
Q 015064          158 AVRFVMSAIPFLPFVFWARDDV--------KTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (414)
Q Consensus       158 ~~R~~~a~l~ll~~~~~~~~~~--------~~~~~~~~~gl~~~-~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-  227 (414)
                      .+|+..+.+++..+...+++.+        +.+.+.+..|++.. .++.++++|+++.+ +.++.+.++.|+++.+++. 
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5799999998888777654321        12233445577665 88999999999999 5888999999999999998 


Q ss_pred             HhcccCchhHHHHHHHHHHhhhhhcccCC
Q 015064          228 MLGAIIPAHTWFGVLISALGVGMLECSGS  256 (414)
Q Consensus       228 ~l~er~~~~~~~gi~l~~~Gv~li~~~~~  256 (414)
                      ++|||++++++++++++++|++++..++.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            79999999999999999999999987654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.06  E-value=8.3e-11  Score=107.36  Aligned_cols=239  Identities=17%  Similarity=0.201  Sum_probs=187.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-Hh
Q 015064          152 HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML  229 (414)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l  229 (414)
                      .|....|..+..-+++-.+++..|++..+ .++.++++++.-.-++++...|.||++...+.++..-....+.+++| ++
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL  126 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL  126 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH
Confidence            58888999999888888888888876543 44557777888888888889999999999999999888888899998 79


Q ss_pred             cccCchhHHHHHHHHHHhhhhhcccC---------CCCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHH
Q 015064          230 GAIIPAHTWFGVLISALGVGMLECSG---------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC  300 (414)
Q Consensus       230 ~er~~~~~~~gi~l~~~Gv~li~~~~---------~~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
                      |.|....++.|++++..||++++..+         ..+..|+++.+++|-+||+..+.-..+.++   .|...++....+
T Consensus       127 ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn---~d~~elm~~lgL  203 (336)
T KOG2766|consen  127 KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN---ADRVELMGFLGL  203 (336)
T ss_pred             HHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhc---CcHHHHHHHHHH
Confidence            99999999999999999999998542         345799999999999999999999999887   455677776677


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhccCChhHHHHHhhhHH
Q 015064          301 VVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYT-GIFSTGICLWIEIAAMRDVSATETAIIYGLEP  379 (414)
Q Consensus       301 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~l-gv~~~~~~~~l~~~al~~~~a~~~s~~~~l~p  379 (414)
                      .++++...-.....  .+   .....|+|.            ...++ ..++..+-|.+..-.+|..+++....-..+.-
T Consensus       204 fGaIIsaIQ~i~~~--~~---~~tl~w~~~------------i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsD  266 (336)
T KOG2766|consen  204 FGAIISAIQFIFER--HH---VSTLHWDSA------------IFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSD  266 (336)
T ss_pred             HHHHHHHHHHhhhc--cc---eeeEeehHH------------HHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHH
Confidence            77777665432221  11   112233322            22233 33455556667777788889998888888888


Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          380 LWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       380 v~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      .+++++  ..||-..+|...+..+.+..|.++.
T Consensus       267 mwsl~i--~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  267 MWSLLI--RTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             HHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence            899888  6788889999999999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.04  E-value=8.7e-09  Score=97.67  Aligned_cols=127  Identities=23%  Similarity=0.282  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHHHHHHhcCcc----hhhhHHHHHHHH-HHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPA--SFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGIELGLW-VSLG  195 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~--~~~~~R~~~a~l~ll~~~~~~~~~~----~~~~~~~~~gl~-~~~~  195 (414)
                      ..+|.+++++++++|+...+..|...++.++.  ....+++.++.++++++....+++.    +.+...+..++. ...+
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999998877754  4555789999988888776543322    122223445655 4688


Q ss_pred             HHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhh
Q 015064          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (414)
Q Consensus       196 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~  249 (414)
                      +.++++++++.+++.++.+.++.|+++.++++ ++||+++..+++|..+.+.|+.
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999998 7999999999999999999873

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.99  E-value=6.1e-08  Score=91.17  Aligned_cols=247  Identities=12%  Similarity=0.133  Sum_probs=192.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-
Q 015064          152 HPASFCAVRFVMSAIPFLPFVFWARDD---VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (414)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-  227 (414)
                      ++..+.+..-+++.++-..++.+++..   .+.+..+...++.+..+..+-+-|++|++--.-.+--..--+-++++.. 
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L  129 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL  129 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence            466777777777777765555444322   3455667778888999999999999999988777777777777888887 


Q ss_pred             HhcccCchhHHHHHHHHHHhhhhhcccCC----------CCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHH
Q 015064          228 MLGAIIPAHTWFGVLISALGVGMLECSGS----------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY  297 (414)
Q Consensus       228 ~l~er~~~~~~~gi~l~~~Gv~li~~~~~----------~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~  297 (414)
                      +.|+|.+..+.+-.++.-+|+.+....+.          ....|..+....-++=+.-.....++-++.. ++...++++
T Consensus       130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k-~s~~~mM~~  208 (327)
T KOG1581|consen  130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYK-VSSLHMMFG  208 (327)
T ss_pred             HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCC-ccHhHHHHH
Confidence            58999999999999999999998774321          1257888888888888888888888887655 788899999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh
Q 015064          298 EICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL  377 (414)
Q Consensus       298 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l  377 (414)
                      ..+.+.+......+..+...+..     .      +--.+|+.+.=++....+ +.+++.+.++-+++.|+-..+.+..+
T Consensus       209 vNLf~~i~~~~~li~qg~~~~av-----~------F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~~FGslt~t~I~tt  276 (327)
T KOG1581|consen  209 VNLFSAILNGTYLILQGHLLPAV-----S------FIKEHPDVAFDILLYSTC-GAVGQLFIFYTIERFGSLTFTTIMTT  276 (327)
T ss_pred             HHHHHHHHHHHhhhcCCCCchHH-----H------HHHcChhHHHHHHHHHHh-hhhhhheehhhHhhcccHHHHHHHHH
Confidence            88888888777644433222111     0      111235556667777775 46688899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          378 EPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       378 ~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      .=.+++.++.+++|++++..||.|..++++|+.+
T Consensus       277 Rk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  277 RKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            9999999999999999999999999999999865

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.95  E-value=3.3e-07  Score=86.51  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-hhHHHHHHHHHH
Q 015064          153 PASFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDG  227 (414)
Q Consensus       153 p~~~~~~R~~~a~l~ll~~~~~~~~~~----~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~ll~~  227 (414)
                      |.+....-..-+.++-+......++..    +.....++.|++..++..+.+.|.++...+.+-.+. ..+-+.+.+++.
T Consensus        12 ~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv   91 (269)
T PF06800_consen   12 PANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGV   91 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHH
Confidence            444444444444444444444444443    334455667888999999999999999999987777 456666777887


Q ss_pred             -HhcccCchhH----HHHHHHHHHhhhhhcccCCC---------CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchh
Q 015064          228 -MLGAIIPAHT----WFGVLISALGVGMLECSGSP---------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLP  293 (414)
Q Consensus       228 -~l~er~~~~~----~~gi~l~~~Gv~li~~~~~~---------~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~  293 (414)
                       +++|--+..+    .+|+++.++|+++....+..         ...|....+.+.+.|..|.+..|..  +   .|+..
T Consensus        92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~---~~~~~  166 (269)
T PF06800_consen   92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--H---VSGWS  166 (269)
T ss_pred             hhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--C---CChhH
Confidence             6999777644    45888899999988865321         2468999999999999999987663  2   44555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHH
Q 015064          294 LLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAI  373 (414)
Q Consensus       294 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~  373 (414)
                      ..+-|.+.-.+....+....  .....  +...              |.. +..|+ .-.++..++..+.++.+.+..-.
T Consensus       167 ~~lPqaiGm~i~a~i~~~~~--~~~~~--~k~~--------------~~n-il~G~-~w~ignl~~~is~~~~G~a~af~  226 (269)
T PF06800_consen  167 AFLPQAIGMLIGAFIFNLFS--KKPFF--EKKS--------------WKN-ILTGL-IWGIGNLFYLISAQKNGVATAFT  226 (269)
T ss_pred             hHHHHHHHHHHHHHHHhhcc--ccccc--ccch--------------HHh-hHHHH-HHHHHHHHHHHhHHhccchhhhh
Confidence            55544333333333332222  11111  1111              222 23344 34667888999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHhcCCCchh----hHHHHHHHHHhhhc
Q 015064          374 IYGLEPLWGAGFAWFLLGERWSTA----GWIGAALVLDVQIF  411 (414)
Q Consensus       374 ~~~l~pv~a~l~~~~~lge~~s~~----~~iG~~LIi~g~~l  411 (414)
                      +.-+.++.+.+.|.+++||.=+..    .++|..+|++|.++
T Consensus       227 lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  227 LSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999998766    44689999888775

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.93  E-value=3.1e-08  Score=95.45  Aligned_cols=131  Identities=16%  Similarity=0.057  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhH
Q 015064          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (414)
Q Consensus       262 ~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  341 (414)
                      .++.++++++++...+..|+..++.   ++  ..++......+...|+.............               ++.|
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~~~~   62 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQVGWSRL---------------PATF   62 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhcccCCCCCc---------------chhh
Confidence            4678999999999999999877652   22  23555555555555554432111111100               0113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +..+..+.+.....+.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.++++.|+++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll  133 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVL  133 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            44555566677788889999999999999999999999999999999999999999999999999998753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.87  E-value=7.8e-08  Score=83.65  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhcc----CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccc
Q 015064          261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM  336 (414)
Q Consensus       261 G~llal~aa~~~al~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  336 (414)
                      |.++++.+.++.+++.+..|+..++.    ...++..+..+....+.+...+.....+.............     .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~-----~~~~   75 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFG-----EELS   75 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-----hhhc
Confidence            67899999999999999999988774    45889999999999999999888777765432211100000     0000


Q ss_pred             -chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          337 -VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       337 -~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                       .++.+..++..|+... +-....+..+++++|...++...+..+...+++++++||+++..+++|.++.++|.++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   76 SDPNFIFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence             1234556666666554 4555888999999999999999999999999999999999999999999999999987654

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.86  E-value=2.6e-07  Score=86.93  Aligned_cols=251  Identities=13%  Similarity=0.039  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC--cc--------hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHH
Q 015064          153 PASFCAVRFVMSAIPFLPFVFWARD--DV--------KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVV  222 (414)
Q Consensus       153 p~~~~~~R~~~a~l~ll~~~~~~~~--~~--------~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~  222 (414)
                      |..++...+++-.++.....+..++  ++        ...++....|++......+.+++++|++.+..++.-+..++|+
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI  124 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI  124 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence            7777777766655554443332211  11        1223444667777788889999999999999999999999999


Q ss_pred             HHHHHHhc-ccCchhHHHHHHHHHHhhhhhcccCCCC-chhhHHHHHHHHHHHHHHHHHhHhhhccC--CCCchhHHHHH
Q 015064          223 PLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTK--KENFLPLLGYE  298 (414)
Q Consensus       223 ~ll~~~l~-er~~~~~~~gi~l~~~Gv~li~~~~~~~-~~G~llal~aa~~~al~~v~~~~~~~~~~--~~~~~~~~~~~  298 (414)
                      .+++.++| ||+++.-..-+++..+|+++.+.....+ ..|.++.++++.+-++-....+.+.++.+  ..+|....+..
T Consensus       125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l  204 (349)
T KOG1443|consen  125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHL  204 (349)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHh
Confidence            99999665 9999999999999999999998876554 58888988888888887777777666554  14566666665


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchh-hHHHHHHHHHHHHHHHHH---HHHHHhccCChhHHHHH
Q 015064          299 ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF-PWVPALYTGIFSTGICLW---IEIAAMRDVSATETAII  374 (414)
Q Consensus       299 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~ll~lgv~~~~~~~~---l~~~al~~~~a~~~s~~  374 (414)
                      .-.-.+.++|..+..+++......  ..|.-.   |   +. .+..+..+++ +...++.   .-+.-+.+++.-..++.
T Consensus       205 ~p~M~~~Ll~~~l~fEG~~~~~~s--~~f~~~---d---~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIa  275 (349)
T KOG1443|consen  205 QPWMSIGLLPLSLLFEGLHLITSS--SIFRFQ---D---TGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIA  275 (349)
T ss_pred             hhHHHHHHHHHHHHHcccccchhh--hHHHhc---C---ccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHH
Confidence            566666666766666655433211  111100   0   11 1233322222 2222332   23445788888888999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       375 ~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ....-+-..++|..+.++.++..-|.|..+...|+.+-
T Consensus       276 GI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  276 GIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988753

>TIGR00688 rarD rarD protein

Probab=98.85  E-value=7.1e-08  Score=91.55  Aligned_cols=137  Identities=18%  Similarity=0.235  Sum_probs=103.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCCcchhhhhccccch
Q 015064          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS-QDFDQSPWTWTMLWDWMVT  338 (414)
Q Consensus       260 ~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~  338 (414)
                      .|.++.++++++|+...+..|.. .+   .++..+.+++++.+.+...+........... .......           .
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-----------~   66 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQ-----------K   66 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcc-----------c
Confidence            48899999999999999999974 33   6789999999999887766654443211100 0000000           0


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          339 FP-WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       339 ~~-~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +. +..+...|++ ..+.+.+++.++++.+++.++.+.++.|+++.++++++++|+++..+++|..+.++|+++.
T Consensus        67 ~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        67 RPLILSLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             chHHHHHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            11 2334444444 6678889999999999999999999999999999999999999999999999999998753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.83  E-value=5.6e-08  Score=94.38  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccc
Q 015064          258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV  337 (414)
Q Consensus       258 ~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  337 (414)
                      ...|.+++++++++|+...+..|.. .+   .++..+.++++.++.++..+............. ....           
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~-----------   69 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQT-----------   69 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcC-----------
Confidence            3579999999999999999999764 33   678999999999998877665543321100000 0000           


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ++.+. ....+.+..++.+.++++++++.+++.++.+.++.|++..++++++++|+++..+++|.++.++|+++.
T Consensus        70 ~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         70 PQKIF-MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            11122 334666777888999999999999999999999999999999999999999999999999999998763

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.81  E-value=8.4e-06  Score=79.98  Aligned_cols=276  Identities=14%  Similarity=0.048  Sum_probs=167.5

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHH-----------HhcCcchhhhHHHHHHH
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVF-----------WARDDVKTRNAGIELGL  190 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~-----------~~~~~~~~~~~~~~~gl  190 (414)
                      +...|++..+++.++||+.++..|. .++.+ +|..+.-..+-.-++.++..           .+..+.......++.|+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            3467999999999999999999998 44333 23223211111111112111           01233445556677788


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHH-hhHHHHHHHHHH-HhcccC-------chhHHHHHHHHHHhhhhhcc----cCC-
Q 015064          191 WVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDG-MLGAII-------PAHTWFGVLISALGVGMLEC----SGS-  256 (414)
Q Consensus       191 ~~~~~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~ll~~-~l~er~-------~~~~~~gi~l~~~Gv~li~~----~~~-  256 (414)
                      +...++.+++.++++...+.+..+. .++-++..++.. +++|=.       ...-.+|+++.++|+++...    .+. 
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~  161 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK  161 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            8999999999999999999975554 677788888887 466422       13468899999999999886    221 


Q ss_pred             ---------CCchhhHHHHHHHHHHHHHHH-------HHhHhhhccCCCCchhHHHHHHH---HHHHHHHH-HHHHh-cc
Q 015064          257 ---------PPSVGDFLNFLSAIFFGIHML-------RTERISRSTKKENFLPLLGYEIC---VVALLSTI-WVLVG-GW  315 (414)
Q Consensus       257 ---------~~~~G~llal~aa~~~al~~v-------~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~-~~~~~-~~  315 (414)
                               ....|..+++++.+.+++|..       ..+... .. +.++.....-+..   +++++.-. +.... ..
T Consensus       162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k  239 (345)
T PRK13499        162 MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-AL-GVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK  239 (345)
T ss_pred             cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     246899999999999999994       333211 11 2344443333333   33332221 11211 01


Q ss_pred             CCCC---CCCCCC-cchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHH---Hh-hhHHHHHHHHHH
Q 015064          316 FDSS---QDFDQS-PWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAI---IY-GLEPLWGAGFAW  387 (414)
Q Consensus       316 ~~~~---~~~~~~-~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~---~~-~l~pv~a~l~~~  387 (414)
                      ....   .+.... ...+.         .. .+-.++.+.=.+++.++..+-++.+......   +. .+..+++.+.|.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~---------n~-l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi  309 (345)
T PRK13499        240 NKDLSLKADFSLAKPLLIT---------NV-LLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL  309 (345)
T ss_pred             CCCcccchhccccchhHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh
Confidence            1111   010000 00000         01 1223333344667778888888776554444   44 777799999998


Q ss_pred             HHhcCCCc------hhhHHHHHHHHHhhhcc
Q 015064          388 FLLGERWS------TAGWIGAALVLDVQIFL  412 (414)
Q Consensus       388 ~~lge~~s------~~~~iG~~LIi~g~~l~  412 (414)
                       ++||.=+      ..-++|.+++++|.++.
T Consensus       310 -~lkE~K~a~~k~~~~l~~G~vliI~g~~li  339 (345)
T PRK13499        310 -VLKEWKGASRRPVRVLSLGCVVIILAANIV  339 (345)
T ss_pred             -hhhhccCCCccchhHHHHHHHHHHHHHHHH
Confidence             5999877      56688999999988763

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.78  E-value=2.5e-07  Score=89.72  Aligned_cols=129  Identities=13%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc-c---hhhhHHHHHHHH-HHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD-V---KTRNAGIELGLW-VSLGYFV  198 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~---~~~~~~~~~gl~-~~~~~~~  198 (414)
                      ..|.++.++++++|+...+..|...++.++....... .++.++++++....... .   ..+...+..|+. ..+++.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999988778887775544 55566666665544321 1   111223455665 4578889


Q ss_pred             HHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       199 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      +++++++.++++++++..++|++..++++ +++|+++..+++|.++.+.|++....
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998 79999999999999999999988753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.71  E-value=3.9e-07  Score=88.42  Aligned_cols=128  Identities=13%  Similarity=0.140  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc-----chhhhHHHHHHHHHHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD-----VKTRNAGIELGLWVSLGYFV  198 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~  198 (414)
                      ..|.+++++++++|+...+..|...++.++....+   ..+.+.+.+........     ...+...+..|+...+++.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999877777765433   22333333322222111     11222333345556678899


Q ss_pred             HHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (414)
Q Consensus       199 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~  254 (414)
                      +++++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.+.|+++....
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            99999999999999999999999999998 799999999999999999999887643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.71  E-value=1.7e-07  Score=82.83  Aligned_cols=205  Identities=12%  Similarity=0.044  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC---CCchhhHH
Q 015064          189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFL  264 (414)
Q Consensus       189 gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~---~~~~G~ll  264 (414)
                      .++....++.|..|++.+++++++-+.....-|+.++++ .+|+|+...++++.++++.|++++...++   ....|..+
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~  139 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIAC  139 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHH
Confidence            344556789999999999999999999999999999999 69999999999999999999999996554   35799999


Q ss_pred             HHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHH---H-HHHHHHHH-hccCCCCCCCCCCcchhhhhccccchh
Q 015064          265 NFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVA---L-LSTIWVLV-GGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (414)
Q Consensus       265 al~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~  339 (414)
                      +++++...|+|-+.-|+.....+ ..  ....++...+.   . ...|.... ...-+..+...              ..
T Consensus       140 AV~SA~~aAlYKV~FK~~iGnAn-~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA--------------~~  202 (290)
T KOG4314|consen  140 AVGSAFMAALYKVLFKMFIGNAN-FG--DAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFA--------------AA  202 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ch--hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHh--------------hC
Confidence            99999999999999999876543 11  11111111111   1 11111111 11111111111              11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      .|..+...+......-+ +.+.++..+.|-..++-......-....+.++-+-..+...+.|..+|+.|.++
T Consensus       203 PWG~l~G~A~L~lAFN~-~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiL  273 (290)
T KOG4314|consen  203 PWGCLCGAAGLSLAFNF-LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFIL  273 (290)
T ss_pred             CchhhhhHHHHHHHHhh-heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            27777777776655444 778899999999999999999999999998766667788899999999988765

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.69  E-value=5.9e-07  Score=76.05  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=90.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchh
Q 015064          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (414)
Q Consensus       260 ~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  339 (414)
                      .|.++.+.+.++-+...+..|+-.++.+..+   ....     ... .... . .          .              
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~---~~~~-----~~~-~~~~-~-~----------~--------------   46 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLS---HAWD-----FIA-ALLA-F-G----------L--------------   46 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhH-----HHH-HHHH-H-h----------c--------------
Confidence            3678888899999999999998776654222   1100     000 0000 0 0          0              


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHH--HhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWF--LLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~--~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                       -...+++|++++++++.+|.+++++.+.+.+.++..+.++...+.++.  ++||++++.+++|.++|++|+++.+|
T Consensus        47 -p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         47 -ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence             112568899999999999999999999999999999999888888874  89999999999999999999998764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.68  E-value=4.6e-07  Score=90.10  Aligned_cols=134  Identities=15%  Similarity=0.035  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhh
Q 015064          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (414)
Q Consensus       261 G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  340 (414)
                      -...+++.-++|+.+.++.|...+.  +.++....++++.+++++++++..........+   ...  |         +.
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~--G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~---~~~--~---------~~   77 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSK--GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP---PLS--V---------SI   77 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC---cch--H---------HH
Confidence            3456677789999999999988754  478899999999999998888766543211111   011  1         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH------hcCCCchhhHHHHHHHHHhhhc
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL------LGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~------lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      |..+..+|+++ .+.+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|.++-++|+.+
T Consensus        78 ~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l  153 (358)
T PLN00411         78 LSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV  153 (358)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH
Confidence            56677778877 4566789999999999999999999999999999998      6999999999999999988775

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.66  E-value=7.4e-07  Score=86.33  Aligned_cols=130  Identities=10%  Similarity=0.040  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc------chhhhHHHHHHHH-HHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD------VKTRNAGIELGLW-VSLGY  196 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~~~~~gl~-~~~~~  196 (414)
                      ..|.++.++++++|+...+..|...+. ++.....+.+.++.+++.++.......      .+.+......|+. ...++
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999986643 445667788888888877766543221      1223333444555 45788


Q ss_pred             HHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (414)
Q Consensus       197 ~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~  254 (414)
                      .++++++++.+++.++++.++.|++++++++ +++|+++..+++|.++.+.|++++...
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 799999999999999999999887643

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.57  E-value=2.9e-06  Score=76.49  Aligned_cols=253  Identities=10%  Similarity=0.056  Sum_probs=183.9

Q ss_pred             HHHHHHhhhc--CC-HHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015064          141 IPILKAAEEI--MH-PASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS  215 (414)
Q Consensus       141 ~~~~k~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~--~~~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~  215 (414)
                      .+..|+..+.  ++ -+.+++.+.++..+-++.+-+.+  +-+.+..+.+....++.....+.--.+++|++....++.-
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK  101 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK  101 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence            3455666653  22 33445555555555444433322  1223445556666777777777778999999999999999


Q ss_pred             hhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccCC--------CCchhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 015064          216 LFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERISRST  286 (414)
Q Consensus       216 ~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~~--------~~~~G~llal~aa~~~al~~v~~~~~~~~~  286 (414)
                      ++..+.++..-. ++|.|++..+....++.++.-+.-.+.+.        ..+.|+++...-++.-+.+....|+..+-.
T Consensus       102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt  181 (309)
T COG5070         102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT  181 (309)
T ss_pred             cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence            999999998887 79999999998888877777666665543        358999999999999999999998865432


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015064          287 KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDV  366 (414)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~  366 (414)
                      . ......++|..+++..+++.+.+..+...+.--..  .         .++....++.+.|+.+.+++| +-.+.++.+
T Consensus       182 N-f~d~dtmfYnNllslPiL~~~s~~~edws~~n~an--n---------l~~d~l~am~ISgl~svgiSy-~saWcvrVt  248 (309)
T COG5070         182 N-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLAN--N---------LSVDSLMAMFISGLCSVGISY-CSAWCVRVT  248 (309)
T ss_pred             c-cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhc--C---------CChHHHHHHHHHHHHHhhhhh-ccceeEeeh
Confidence            2 34466788888888888887777765433221010  1         113345667788888778887 778899999


Q ss_pred             ChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 015064          367 SATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL  406 (414)
Q Consensus       367 ~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi  406 (414)
                      +.+.-+++..++-.-..+-|.++|+|+.+...+....+=.
T Consensus       249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGf  288 (309)
T COG5070         249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGF  288 (309)
T ss_pred             hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHH
Confidence            9999999999999999999999999999988887766544

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.53  E-value=2.6e-06  Score=82.71  Aligned_cols=258  Identities=13%  Similarity=0.125  Sum_probs=148.7

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHH-HHHHHHHH
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLW-VSLGYFVE  199 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~gl~-~~~~~~~~  199 (414)
                      ....|+++.++++++-+....+.|....+.+...   .|             .+++.++ .+++.+..|+. ..++..+.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~---~~-------------~~~~~~~~l~~~~W~~G~~~~~~g~~~~   67 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS---LR-------------AGSGGRSYLRRPLWWIGLLLMVLGEILN   67 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cc-------------ccchhhHHHhhHHHHHHHHHHhcchHHH
Confidence            3467899999999999998888887654222100   00             0001111 12334555554 45777889


Q ss_pred             HHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC--CC--C----------chhh--
Q 015064          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SP--P----------SVGD--  262 (414)
Q Consensus       200 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~--~~--~----------~~G~--  262 (414)
                      +.|+.+.|++..+.+..+.-++..+++. ++|||+++.++.|+.++++|..+++..+  ..  .          ..+.  
T Consensus        68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~  147 (300)
T PF05653_consen   68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLV  147 (300)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceeh
Confidence            9999999999999999999999999998 7999999999999999999999876321  11  1          1111  


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHH---H-HHHhccCCCCCCCCCCcchhhhhccccch
Q 015064          263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTI---W-VLVGGWFDSSQDFDQSPWTWTMLWDWMVT  338 (414)
Q Consensus       263 llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  338 (414)
                      ...+...+...+.....+|..++    +.........+.++.-.+.   . ..+......     ...+        .+|
T Consensus       148 y~~~~~~~~~~L~~~~~~r~g~~----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g-----~~~f--------~~~  210 (300)
T PF05653_consen  148 YFILVLVLILILIFFIKPRYGRR----NILVYISICSLIGSFTVLSAKAISILIKLTFSG-----DNQF--------TYP  210 (300)
T ss_pred             hHHHHHHHHHHHHHhhcchhccc----ceEEEEEEeccccchhhhHHHHHHHHHHHHhcC-----chhh--------hhh
Confidence            11122222223333333333222    1111111111111111110   0 011110000     0010        012


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHH-HHHHHHHHHhcCC--Cch----hhHHHHHHHHHhhhc
Q 015064          339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPL-WGAGFAWFLLGER--WST----AGWIGAALVLDVQIF  411 (414)
Q Consensus       339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv-~a~l~~~~~lge~--~s~----~~~iG~~LIi~g~~l  411 (414)
                      ..|..++. -+++........++|+++.+++.+.++.+..=. .+++-+.++++|.  .+.    ....|..+++.|+++
T Consensus       211 ~~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~l  289 (300)
T PF05653_consen  211 LTYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFL  289 (300)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhe
Confidence            23444433 344556677788899999999998877765544 4455677888875  444    345688888888887


Q ss_pred             cc
Q 015064          412 LP  413 (414)
Q Consensus       412 ~~  413 (414)
                      -+
T Consensus       290 L~  291 (300)
T PF05653_consen  290 LS  291 (300)
T ss_pred             ee
Confidence            54

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.48  E-value=3.9e-06  Score=81.56  Aligned_cols=124  Identities=18%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhH
Q 015064          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (414)
Q Consensus       262 ~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  341 (414)
                      .+++++++++|+...+..|...++   .++....++++.++++...+..  ..     .   ...              +
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~--~~-----~---~~~--------------~   58 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFV--AR-----P---KVP--------------L   58 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHh--cC-----C---CCc--------------h
Confidence            366889999999999999987654   7789999999988776554432  10     0   011              2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          342 VPALYTGIFSTGICLWIEIAAMRD-VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~-~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ..++..|+......+.+++.++++ .+++.++.+.++.|+++.++++++++|+++..+++|.++.++|+++.
T Consensus        59 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll  130 (299)
T PRK11453         59 NLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVL  130 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHh
Confidence            223344554445555677788887 58899999999999999999999999999999999999999998753

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.45  E-value=3.3e-06  Score=69.65  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          346 YTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      .+++++.++++.++.+++++.+.+.+.++.++.++++.+++++++||++++.+++|.++|++|+++..
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34557778899999999999999999999999999999999999999999999999999999987653

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=1.5e-07  Score=87.21  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=182.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcC------------cchhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHH
Q 015064          152 HPASFCAVRFVMSAIPFLPFVFWARD------------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV  219 (414)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~------------~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~P  219 (414)
                      .|..+.+...++...+.+.+-...++            +.+.-+..+.+.+...++..+-.++++|.+++..-+-..+..
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            48888888888877666654432211            111222333444444555667788999999999888899999


Q ss_pred             HHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC----CCCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhH
Q 015064          220 IVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPL  294 (414)
Q Consensus       220 l~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~----~~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~  294 (414)
                      +|+.++.+ ++|+|-+.....+.++.+.|-.+=+..+    .....|.++++.+.++-|+..+..|+.....+ .....+
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~-~~iw~l  218 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVG-DCIWRL  218 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheeccccc-Ceehhh
Confidence            99999998 7999999999998888888877755443    22479999999999999999999998765544 345677


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 015064          295 LGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII  374 (414)
Q Consensus       295 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~  374 (414)
                      ++|+.+.+.++.+|...+.+........+..       +   +.++|..+...|+++..++|. -..=+|.++|....+-
T Consensus       219 t~ynnv~a~lLflpll~lnge~~~v~~~~~l-------~---a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnIS  287 (347)
T KOG1442|consen  219 TAYNNVNALLLFLPLLILNGEFQAVVGFPHL-------P---AIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNIS  287 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHcCcccc-------h---HHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeec
Confidence            8889999999999988887655443322111       1   134588888888888777773 3445777888777666


Q ss_pred             hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       375 ~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      ..-.-..-.+++..+.+|.-+...|-|-.+|++|...
T Consensus       288 gTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~  324 (347)
T KOG1442|consen  288 GTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA  324 (347)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence            6666777788888999999999999988888877654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.44  E-value=2.7e-06  Score=82.75  Aligned_cols=130  Identities=17%  Similarity=0.093  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHHhcCcc--h-hh-------h--HHH---
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARDDV--K-TR-------N--AGI---  186 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~--~-~~-------~--~~~---  186 (414)
                      ..|.++.+++++.|+...+..|...+  +.+|..+.++-+..+.+.++|+........  . ..       .  ...   
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            56999999999999999999998887  799999999999999988888866432111  0 00       0  011   


Q ss_pred             -HHHH-HHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          187 -ELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       187 -~~gl-~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                       ..+. .....+.+++++++++++..++++..+.|+++.++++ +++|+++..+++|.++.+.|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence             1111 1122235667899999999999999999999999998 79999999999999999999988764

specificities overlap.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.38  E-value=2.8e-06  Score=70.30  Aligned_cols=71  Identities=25%  Similarity=0.544  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      |...+..|+++..+++.++.+++++.++ .++++..+.|+++.++++++++|+++..+++|.+++++|+++.
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li  104 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILI  104 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            5566677887777899999999999995 8889999999999999999999999999999999999999864

>TIGR00803 nst UDP-galactose transporter

Probab=98.38  E-value=8.1e-06  Score=75.78  Aligned_cols=61  Identities=15%  Similarity=0.051  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      ...++..+....+|+.++...+....++++++.+++++++||+++..+++|+.+++.|+.+
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3455666788899999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.36  E-value=1.3e-05  Score=66.22  Aligned_cols=62  Identities=19%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       192 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      ...++.++.+++++.|.+.+..+..+.++++.++++ ++|||++.++++|+.+.+.|++++..
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            467889999999999999999988999999999998 79999999999999999999988764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.31  E-value=7.9e-06  Score=79.13  Aligned_cols=126  Identities=20%  Similarity=0.181  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHH---HHHHHHHHHHHHhcCcch--hhhHHHHHHHHHHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFV---MSAIPFLPFVFWARDDVK--TRNAGIELGLWVSLGYFV  198 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~---~a~l~ll~~~~~~~~~~~--~~~~~~~~gl~~~~~~~~  198 (414)
                      .+|+++.+++++.++......|..  +.+|....+....   ++++++.+... +.++..  .....+..|+....++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Gi~~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKPLKKYAILLNILPGLMWGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999976  3788888555444   33333332221 112211  222344468877888999


Q ss_pred             HHHHHh-hcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHH----HHHHHHHHhhhhhc
Q 015064          199 EALGLL-TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTW----FGVLISALGVGMLE  252 (414)
Q Consensus       199 ~~~al~-~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~----~gi~l~~~Gv~li~  252 (414)
                      |+.+++ +.+++.+.++....|+...+.+. ++||+.+++++    +|.++.+.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            999999 99999999999999999999998 69999999999    99999999998865

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.27  E-value=4.4e-05  Score=72.86  Aligned_cols=130  Identities=16%  Similarity=0.281  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHH-HHHHHHHHHHHHHHHHhcC---cchhhhHHHHHHHHHH-HHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVS-LGYFV  198 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~-~R~~~a~l~ll~~~~~~~~---~~~~~~~~~~~gl~~~-~~~~~  198 (414)
                      ..|.++.+++++.|+...+..|... +.++..... +.+........+.......   ....+......|+... .++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999777 567776666 4444222333233222221   2233444555576655 68999


Q ss_pred             HHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (414)
Q Consensus       199 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~  254 (414)
                      +++++++.+++.++.+..+.|++..++++ +++|+++..+++|..+.+.|+.+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999898 699999999999999999999887644

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.23  E-value=5.9e-05  Score=65.41  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhh-------cCCHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------------hh
Q 015064          126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWARDDV-----------------KT  181 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~-------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----------------~~  181 (414)
                      |.++++.+.++-+...+..|...+       +.++.+...+-...+.+++++.........                 +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            467888999999999999987654       378999999999999999988766532211                 11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhh
Q 015064          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (414)
Q Consensus       182 ~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~l  250 (414)
                      ....+..|++.+..+...+..++++++...+++...-.+++.+++. +++|+++..+++|+++++.|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            1122334666778889999999999999999999999999999998 79999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.23  E-value=4.2e-05  Score=76.09  Aligned_cols=129  Identities=12%  Similarity=0.132  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHHHHHHhcC-c-c----------hhh--
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWARD-D-V----------KTR--  182 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~-------~~p~~~~~~R~~~a~l~ll~~~~~~~~-~-~----------~~~--  182 (414)
                      ..|.++++++++.|+...+..|...++       .++.....+-..+++++++|+...... . .          ...  
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            569999999999999999999988764       557667666678888888887653211 0 0          000  


Q ss_pred             hHHHHH----HHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhc
Q 015064          183 NAGIEL----GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (414)
Q Consensus       183 ~~~~~~----gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~  252 (414)
                      ...+..    +++.+..+.+.|++++++++..+++...+.|+++.++++ +++|+++..+++|.++++.|+.+..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            111111    222233334445799999999999999999999999998 7999999999999999999998754

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.22  E-value=9.3e-05  Score=68.87  Aligned_cols=244  Identities=11%  Similarity=0.001  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-Hhcc
Q 015064          155 SFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGA  231 (414)
Q Consensus       155 ~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~e  231 (414)
                      .+++.++++-..+.+..+..  .+++...++-+..++.+......+..-++.|++--.-.+.-.+--+=+.+.+. +=|.
T Consensus        77 ylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGk  156 (367)
T KOG1582|consen   77 YLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGK  156 (367)
T ss_pred             HHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccc
Confidence            44555554433333322211  23334456666666666666666667777777755555555555555556666 4688


Q ss_pred             cCchhHHHHHHHHHHhhhhhcccCCC-----CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHH
Q 015064          232 IIPAHTWFGVLISALGVGMLECSGSP-----PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLS  306 (414)
Q Consensus       232 r~~~~~~~gi~l~~~Gv~li~~~~~~-----~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  306 (414)
                      |.+..+..+..+..+|+++....|+.     ...|+.+.-+|-++=|.---+.++.-+..+ .+...+.++...++.+..
T Consensus       157 RY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-~ss~EmvfySy~iG~vfl  235 (367)
T KOG1582|consen  157 RYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-ASSSEMVFYSYGIGFVFL  235 (367)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-CCcceEEEeeecccHHHH
Confidence            99999999999999999998875532     357888877777777777777777766655 455778888888888888


Q ss_pred             HHHHHHhccCCC-CCCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHH
Q 015064          307 TIWVLVGGWFDS-SQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGF  385 (414)
Q Consensus       307 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~  385 (414)
                      +..+...+.... ...-...++           +.+......+. .+.++...-..-++..++..++.+....--+++++
T Consensus       236 f~~mvlTge~f~a~~fcaehp~-----------~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~l  303 (367)
T KOG1582|consen  236 FAPMVLTGELFSAWTFCAEHPV-----------RTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILL  303 (367)
T ss_pred             HHHHHhcccchhhhHHHHhCcH-----------hHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHH
Confidence            777666553321 111111121           11333443333 34556666667788999999999999999999999


Q ss_pred             HHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          386 AWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       386 ~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      ++++|..+++....-|+.+|+.|+++
T Consensus       304 SfllFsKPfT~qy~~~gllv~lgI~L  329 (367)
T KOG1582|consen  304 SFLLFSKPFTEQYVWSGLLVVLGIYL  329 (367)
T ss_pred             HHHHHcCchHHHHhhhhHHHHHHHHh
Confidence            99999999999999999999999986

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.17  E-value=7.2e-05  Score=63.32  Aligned_cols=119  Identities=15%  Similarity=0.013  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHHHHHHHHHH
Q 015064          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGL  203 (414)
Q Consensus       125 ~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~-~~~~~~~~~~al  203 (414)
                      .++++++++.++-+..-++.|...++.+..+.....  ...+..          .......+..|+. ...++.++.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~~----------~~~p~~~i~lgl~~~~la~~~w~~aL   69 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALLA----------FGLALRAVLLGLAGYALSMLCWLKAL   69 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHHH----------HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888888888888899999988776544422211  000000          0111124555554 568889999999


Q ss_pred             hhcchhHHHHHHhhHHHHHHHHHH---HhcccCchhHHHHHHHHHHhhhhhcccC
Q 015064          204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECSG  255 (414)
Q Consensus       204 ~~~~~~~a~~l~~~~Pl~~~ll~~---~l~er~~~~~~~gi~l~~~Gv~li~~~~  255 (414)
                      ++.|++.+..+....+.++.+.++   ++||+++..+++|+++.++|++++..++
T Consensus        70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999888888886   5899999999999999999999987653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.00  E-value=7.4e-05  Score=70.53  Aligned_cols=136  Identities=16%  Similarity=0.219  Sum_probs=108.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccch
Q 015064          259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVT  338 (414)
Q Consensus       259 ~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  338 (414)
                      ..|.++++.|-+.|+....+.|-+..    .++..+..++.+.+...............+..+.            +-+|
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~------------~~~p   69 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLLEP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQL------------LKQP   69 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------HhCc
Confidence            57999999999999999998887654    5678889999888888776665555432222111            1224


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      +.+...+..++. .......+.+|.++.....+|.--+++|++.+++|.++++|+++..|++..++-.+|+..
T Consensus        70 ~~~~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~  141 (293)
T COG2962          70 KTLLMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI  141 (293)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            556666665555 355888999999999999999999999999999999999999999999999999988864

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.89  E-value=0.0003  Score=65.05  Aligned_cols=127  Identities=15%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhHHHHHHHHH-HHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGIELGLWV-SLGYFV  198 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~----~~~~~~~~~gl~~-~~~~~~  198 (414)
                      ..|..+.+.+..+|+..-+..|.+-+..+...-+..-+.+++++.+|+-.-...+-    ......+..|++. .+.|.+
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL  226 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence            57899999999999999999998887778888889999999999999876554332    2222233334443 477789


Q ss_pred             HHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhh
Q 015064          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (414)
Q Consensus       199 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~l  250 (414)
                      ...++++.|...-+++.++.|.+.++.++ +++|+++..||+|+...+.+..=
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG  279 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG  279 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999 79999999999999887776653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.66  E-value=8.6e-06  Score=74.68  Aligned_cols=259  Identities=12%  Similarity=0.080  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHHHHHHHHHH
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD--VKTRNAGIELGLWVSLGYFVEALGL  203 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~gl~~~~~~~~~~~al  203 (414)
                      .++.+++-++.||+........-  =+|.+....-.+-+.++.+.+++..++.  .+.....++.|.+..++....+.|.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~G--G~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~   80 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFG--GKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKAI   80 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecC--CChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhhe
Confidence            47888999999999887654322  3576666655555555555444443332  2334455666888889999999999


Q ss_pred             hhcchhHHHHHHh-hHHHHHHHHHH-HhcccCchhH----HHHHHHHHHhhhhhcccCC---------CCchhhHHHHHH
Q 015064          204 LTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNFLS  268 (414)
Q Consensus       204 ~~~~~~~a~~l~~-~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~~~Gv~li~~~~~---------~~~~G~llal~a  268 (414)
                      ++.+++.+..+.. .+-+-+.+++. .++|-.+..+    .+++++.+.|+.+-...+.         ....|....+.+
T Consensus        81 ~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iS  160 (288)
T COG4975          81 QLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLIS  160 (288)
T ss_pred             eeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeee
Confidence            9999999877764 55555666777 5898777643    5677788888888776532         135788888889


Q ss_pred             HHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhHHHHHHHH
Q 015064          269 AIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTG  348 (414)
Q Consensus       269 a~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ll~lg  348 (414)
                      .+.|-+|.+..+...  .++.+...-....+.+++++.    -....  +.. .+               +.-+.-+..|
T Consensus       161 t~GYv~yvvl~~~f~--v~g~saiLPqAiGMv~~ali~----~~~~~--~~~-~~---------------K~t~~nii~G  216 (288)
T COG4975         161 TLGYVGYVVLFQLFD--VDGLSAILPQAIGMVIGALIL----GFFKM--EKR-FN---------------KYTWLNIIPG  216 (288)
T ss_pred             ccceeeeEeeecccc--ccchhhhhHHHHHHHHHHHHH----hhccc--ccc-hH---------------HHHHHHHhhH
Confidence            999999999887654  223333333222222222221    11110  111 11               1122234455


Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhH----HHHHHHHHhhhc
Q 015064          349 IFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGW----IGAALVLDVQIF  411 (414)
Q Consensus       349 v~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~----iG~~LIi~g~~l  411 (414)
                      +.- +++...+..+-++.+....=.++-+..+.+.+-|.++++|+=|..++    +|..++++|.++
T Consensus       217 ~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~  282 (288)
T COG4975         217 LIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL  282 (288)
T ss_pred             HHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence            543 55788888999999998888888899999999999999999988765    688888877654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.63  E-value=0.00089  Score=55.79  Aligned_cols=67  Identities=12%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      +.++..++++.++.+++|+.+.+.+=.+ ..+..+.+.+.+++++||++++.+++|..+|++|++..+
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            4556678899999999999999998776 468999999999999999999999999999999998653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.53  E-value=0.00064  Score=55.83  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      ..+++.++++.++..++|+.+.+.+=.+ .-+..+...+.++++|||++++.+++|.++|++|++..
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            4566678899999999999999998666 66889999999999999999999999999999998864

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.51  E-value=0.0024  Score=52.26  Aligned_cols=64  Identities=20%  Similarity=0.378  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          349 IFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       349 v~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +++..+++.+...++|+.+.+.+ ++..-+..+.+.+.+++++||++++.+++|..+|++|++..
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            45567789999999999999887 45556888888999999999999999999999999999864

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.00041  Score=66.37  Aligned_cols=260  Identities=12%  Similarity=0.067  Sum_probs=154.1

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHH-HHHHHHH
Q 015064          121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLW-VSLGYFV  198 (414)
Q Consensus       121 ~~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~gl~-~~~~~~~  198 (414)
                      .+...|..+.+.+.++.|.++.+-|....+...   ...|             ......+ ...+.+..|++ +.++-.+
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~r-------------a~~gg~~yl~~~~Ww~G~ltm~vGei~   80 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLR-------------AGEGGYGYLKEPLWWAGMLTMIVGEIA   80 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hccc-------------ccCCCcchhhhHHHHHHHHHHHHHhHh
Confidence            345678899999999999999999876653221   1111             0111111 12244555655 5688888


Q ss_pred             HHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC--CCC------------chhhH
Q 015064          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPP------------SVGDF  263 (414)
Q Consensus       199 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~--~~~------------~~G~l  263 (414)
                      -|.|+.+.|++..+.+..++-++.++++. +++||++....+|.+++++|-.+++...  ...            ..+.+
T Consensus        81 NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl  160 (335)
T KOG2922|consen   81 NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL  160 (335)
T ss_pred             hHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH
Confidence            99999999999999999999999999998 8999999999999999999999988532  110            12211


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHH-----HHHHHHhccCCCCCCCCCCcchhhhhccccch
Q 015064          264 LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLS-----TIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVT  338 (414)
Q Consensus       264 lal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  338 (414)
                      .  -.++.-.+..+..-....++...+++.....-.+.++.-.     +-.++-.......+.   ..           |
T Consensus       161 i--y~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql---~~-----------~  224 (335)
T KOG2922|consen  161 V--YVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQL---FY-----------P  224 (335)
T ss_pred             H--HHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccc---cc-----------H
Confidence            1  1111111111111122222222344444332222221110     111111111111110   01           2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh-HHHHHHHHHHHHhcCCC--ch----hhHHHHHHHHHhhhc
Q 015064          339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL-EPLWGAGFAWFLLGERW--ST----AGWIGAALVLDVQIF  411 (414)
Q Consensus       339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l-~pv~a~l~~~~~lge~~--s~----~~~iG~~LIi~g~~l  411 (414)
                      ..|..++.+.. +.+...--.++|++..+++.++++.|. -..++++-+.++|.|.-  +.    ..+.|...++.|+++
T Consensus       225 ~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl  303 (335)
T KOG2922|consen  225 LTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL  303 (335)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence            23555554444 445566677899999999999888775 34555666788888753  33    345688888888876


Q ss_pred             cc
Q 015064          412 LP  413 (414)
Q Consensus       412 ~~  413 (414)
                      ..
T Consensus       304 L~  305 (335)
T KOG2922|consen  304 LH  305 (335)
T ss_pred             ee
Confidence            54

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.45  E-value=0.00057  Score=56.09  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 015064          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR  210 (414)
Q Consensus       131 lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~~~~~~  210 (414)
                      ++.+++||...++.|...++.++..-.. +..-....+          ...++ +..--+++..+...|++.+...+.+.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~L----------l~n~~-y~ipf~lNq~GSv~f~~~L~~~dlSl   69 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFL----------LLNPK-YIIPFLLNQSGSVLFFLLLGSADLSL   69 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHH----------HHhHH-HHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            3567899999999999887654433321 322111111          11222 22223456788899999999999999


Q ss_pred             HHHHH-hhHHHHHHHHHHHhcccC-chhHHHHHHHHHHhhhhh
Q 015064          211 ASFIS-LFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML  251 (414)
Q Consensus       211 a~~l~-~~~Pl~~~ll~~~l~er~-~~~~~~gi~l~~~Gv~li  251 (414)
                      +..+. ++.=+++.+.+++++|+. +++.++|.++.+.|+.+.
T Consensus        70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            98885 778888888888766555 667899999999999875

Many members are annotated as potential transmembrane proteins.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.42  E-value=0.0046  Score=60.78  Aligned_cols=71  Identities=11%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      |+..+.++++- +.+..+...|+++++.+.+.++.....++++++++++++++.++.+++|.++.++|+.+.
T Consensus        79 ~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv  149 (334)
T PF06027_consen   79 WWKYFLLALLD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLV  149 (334)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhe
Confidence            55556677765 567889999999999999999999999999999999999999999999999999998754

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.42  E-value=0.0077  Score=51.64  Aligned_cols=124  Identities=12%  Similarity=0.086  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcCc-----chhhhHHHHHHHHHHHHHHHHH
Q 015064          127 IFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARDD-----VKTRNAGIELGLWVSLGYFVEA  200 (414)
Q Consensus       127 ~l~~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~~~  200 (414)
                      .++.+++..+-+....+.-.+.+..+ |....++-+..+.+++..+....+++     ++.+++.+.-|+++.....+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~   82 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence            46677788888888888877777776 99999999999999988777765542     1233445555778888888999


Q ss_pred             HHHhhcchhHHHHHHhhHHHHHHHH-HHH--h---cccCchhHHHHHHHHHHhhhh
Q 015064          201 LGLLTSDAGRASFISLFTVIVVPLF-DGM--L---GAIIPAHTWFGVLISALGVGM  250 (414)
Q Consensus       201 ~al~~~~~~~a~~l~~~~Pl~~~ll-~~~--l---~er~~~~~~~gi~l~~~Gv~l  250 (414)
                      +...+++++.+..+..+.-++..++ ..+  +   ++++++.+.+|+.+.+.|+++
T Consensus        83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999887777666655554 443  2   688999999999999999874

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.40  E-value=0.0083  Score=51.41  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhhH
Q 015064          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (414)
Q Consensus       262 ~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  341 (414)
                      .++++.+++.-++...++.++.++.+  ++....+..+..+.+....+....... ........+              |
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p--------------~   65 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP--------------W   65 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC--------------h
Confidence            57889999999999999999998854  478888888888888887776666543 222221112              3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh-HHHHHHHHHHH----HhcCCCchhhHHHHHHHHHhhhc
Q 015064          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL-EPLWGAGFAWF----LLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l-~pv~a~l~~~~----~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      +.  ++|.+..++...+....+++.+++........ +.+.+.++|.+    .-.+++++.+++|.+++++|+++
T Consensus        66 w~--~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   66 WA--YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HH--hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            33  33544556666688899999999887666544 56666778875    23467899999999999999874

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.39  E-value=0.0037  Score=59.31  Aligned_cols=126  Identities=18%  Similarity=0.086  Sum_probs=89.8

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHHHHHHHHH
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVE  199 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~~~~gl~~~~~~~~~  199 (414)
                      +..++++.++++.+.+....++.|.  .+++|....+-......+...++...  +....+...+-+..|++...++.++
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~  212 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY  212 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence            3467899999999999888888887  34677766664433332322233221  2222333445677799999999999


Q ss_pred             HHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHH----HHHHHHHhhh
Q 015064          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWF----GVLISALGVG  249 (414)
Q Consensus       200 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~----gi~l~~~Gv~  249 (414)
                      +.|.+....+.+-.+..+..++..+-+. ++||+-+++++.    |+++.++|.+
T Consensus       213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999998 699999987654    4444444443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.36  E-value=0.0067  Score=49.69  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhh
Q 015064          181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (414)
Q Consensus       181 ~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li  251 (414)
                      ++.+....-+....+++++..+++++|.+.+ ++....--+.+.+++. ++||+++..+++|+.+.+.|++.+
T Consensus        34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3334444455567888999999999999996 6677788888899998 699999999999999999999876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.003  Score=51.11  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       181 ~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      +..+.+..-+....++.++..|++++|.+.| ++-...-.+.+.+.++ ++||+++..+++++.+.++|++.+-.
T Consensus        29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3444455555677888999999999999996 7778888899999998 79999999999999999999987643

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.0041  Score=58.34  Aligned_cols=245  Identities=13%  Similarity=0.098  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCcchhhhHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHhhHHHHHHHHHH-Hh
Q 015064          154 ASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGLLT-SDAGRASFISLFTVIVVPLFDG-ML  229 (414)
Q Consensus       154 ~~~~~~R~~~a~l~ll~~~~~~--~~~~~~~~~~~~~gl~~~~~~~~~~~al~~-~~~~~a~~l~~~~Pl~~~ll~~-~l  229 (414)
                      ..++|..+++-+.--+++.-.-  .+++-.++.+...-.+.+..+.+-++++++ +|...=-++..-.++.++++++ ++
T Consensus        34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~  113 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILL  113 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhc
Confidence            4566666666555544443211  123333444444444445555677777774 4444444555667888999999 68


Q ss_pred             cccCchhHHHHHHHHHHhhhhhcccCC----C----------------CchhhHHHHHHHHHHHHHHHHHhHhhhccCCC
Q 015064          230 GAIIPAHTWFGVLISALGVGMLECSGS----P----------------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKE  289 (414)
Q Consensus       230 ~er~~~~~~~gi~l~~~Gv~li~~~~~----~----------------~~~G~llal~aa~~~al~~v~~~~~~~~~~~~  289 (414)
                      |+|.+.+|+..+++.-+|+++.....+    .                ...|..+...+-+.-|.-.++.++.-++++ .
T Consensus       114 ~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-K  192 (330)
T KOG1583|consen  114 GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG-K  192 (330)
T ss_pred             cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            999999999999999999999764211    0                136766666666666666666666555555 3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCC-----CCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHh-
Q 015064          290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-----DQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAM-  363 (414)
Q Consensus       290 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al-  363 (414)
                      ++-+.++|.=.+..    |..++.+..  ..+.     ...+...+ ..+-.-|..|..++.-     .+.|..-.+++ 
T Consensus       193 h~~EalFytH~LsL----P~Flf~~~d--iv~~~~~~~~se~~~~p-~~g~~vP~~~~yLl~n-----~L~Qy~CikgVy  260 (330)
T KOG1583|consen  193 HWKEALFYTHFLSL----PLFLFMGDD--IVSHWRLAFKSESYLIP-LLGFKVPSMWVYLLFN-----VLTQYFCIKGVY  260 (330)
T ss_pred             ChHHHHHHHHHhcc----chHHHhcch--HHHHHHHHhcCcceecc-ccCccccHHHHHHHHH-----HHHHHHHHHhhh
Confidence            56666666544433    332222110  0000     00000000 0111123445554432     22333334443 


Q ss_pred             ---ccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          364 ---RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       364 ---~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                         .+.++-.++++..+.-.++.+++.+.|+.+++++.|+|..++..|.++
T Consensus       261 ~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~  311 (330)
T KOG1583|consen  261 ILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL  311 (330)
T ss_pred             hhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence               445666778888999999999999999999999999999999999865

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.31  E-value=0.0036  Score=50.92  Aligned_cols=72  Identities=11%  Similarity=0.058  Sum_probs=59.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhc
Q 015064          181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (414)
Q Consensus       181 ~~~~~~~~gl~~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~  252 (414)
                      ++.+....-+....+++++..++++.|.+.+ ++-..+--+.+.+++. ++||+++..+++|+.+.+.|++.+-
T Consensus        28 ~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         28 RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3334444455567888999999999999996 6777788889999998 7999999999999999999998874

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.30  E-value=0.0033  Score=52.42  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHH-HHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064          186 IELGLWVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (414)
Q Consensus       186 ~~~gl~~~~~~~~~~~al~~~~~~~a~-~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~  254 (414)
                      +..-++...+++++..++++.|.+.|= +...+.-+.+.+++. +++|+++..+++|+.+.++|++++-..
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            334455678889999999999999974 445788889999998 799999999999999999999887543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.29  E-value=0.0017  Score=52.88  Aligned_cols=64  Identities=23%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          349 IFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       349 v~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +++.++++.++..++|+.+.+.+ ++..-+..+.+.+.+++++||++++.+++|..+|++|++..
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            55667889999999999999887 55556888999999999999999999999999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0016  Score=52.57  Aligned_cols=65  Identities=26%  Similarity=0.300  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      .+++..++|.+...++|+.+.+.+ ++..-...+.+.+.++++|||++++.+++|..++++|++.-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            444567789999999999998887 66777888888999999999999999999999999999764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.29  E-value=0.0038  Score=51.26  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          186 IELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       186 ~~~gl~~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      +..-+....++.++..++++.|.+.| ++...+.-+.+.+++. ++||+++..+++|+.+.+.|++++-.
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            33344566788889999999999997 5556788888899998 79999999999999999999999854

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.25  E-value=0.01  Score=57.80  Aligned_cols=128  Identities=14%  Similarity=0.109  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHH--hcCc----------chhhhHHHHHHHH
Q 015064          126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARDD----------VKTRNAGIELGLW  191 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~----------~~~~~~~~~~gl~  191 (414)
                      |+++++++.++-|...+..+...+  +.++.+..++-..++.+++++....  ....          +......+...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999988876  4889999999999988888776665  2211          1122334455666


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       192 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      +..+..+.++-.+..++...+++..+--+++.+++. +++++++..+|.|+++.+.|..+-..
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            778888888889999999999999999999999998 68999999999999999999987553

; GO: 0055085 transmembrane transport

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.14  E-value=0.0044  Score=49.32  Aligned_cols=58  Identities=19%  Similarity=0.366  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHH-HhhhHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 015064          348 GIFSTGICLWIEIAAMRDVSATETAI-IYGLEPLWGAGFAWFLLGERWSTAGWIGAALV  405 (414)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~s~-~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LI  405 (414)
                      .+.+.++++.++.+++|+.+.+.+=. ..-+..+...+.+.+++||++++.++.|.++|
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            44467788999999999999999955 55699999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.97  E-value=0.00025  Score=65.94  Aligned_cols=135  Identities=18%  Similarity=0.263  Sum_probs=97.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccc
Q 015064          257 PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM  336 (414)
Q Consensus       257 ~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  336 (414)
                      ..+.|..+.-++ ..+-..+++.++....    ||....-..+++-.++..|..+....+- ..+....-          
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~R~----------   98 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGKRK----------   98 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeee-ecCCCcEE----------
Confidence            356788888777 7777788888877653    4566666666666666666544433221 11111111          


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcccC
Q 015064          337 VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       337 ~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                          |  ++.=|+.+ ..+..+.++++++.+-+.+.++.+..|+++.+++|.+++|+.|....+|..+-+.|+++-.|
T Consensus        99 ----~--LiLRg~mG-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen   99 ----W--LILRGFMG-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             ----E--EEeehhhh-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence                1  22334443 33566889999999999999999999999999999999999999999999999999988665

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.85  E-value=0.0064  Score=59.10  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccc
Q 015064          257 PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM  336 (414)
Q Consensus       257 ~~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  336 (414)
                      +...|..+++.++++.+....+.|+...+.+. +...-.      ..    .....            ....        
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~------~~----~~~~l------------~~~~--------   52 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG------SG----GRSYL------------RRPL--------   52 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc------ch----hhHHH------------hhHH--------
Confidence            34579999999999999999999987665432 000000      00    00000            0000        


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          337 VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       337 ~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                          |    +.|.+..+++..+...|+...+++.++++..+..++..+++.+++||+++...+.|.++++.|..+
T Consensus        53 ----W----~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   53 ----W----WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             ----H----HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence                2    223334455666778899999999999999999999999999999999999999999999999864

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.53  E-value=0.093  Score=45.29  Aligned_cols=137  Identities=16%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchh
Q 015064          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (414)
Q Consensus       260 ~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  339 (414)
                      ...++++.++++-.+..-++.++.+..+  +|+.-.+..+.++.+.+..+........+.......+             
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p-------------   69 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP-------------   69 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc-------------
Confidence            3457788899999999999999988754  5788888888998888777666643322222111111             


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhH-HHHHhhhHHHHHHHHHHHHhc----CCCchhhHHHHHHHHHhhhcccC
Q 015064          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATE-TAIIYGLEPLWGAGFAWFLLG----ERWSTAGWIGAALVLDVQIFLPR  414 (414)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~-~s~~~~l~pv~a~l~~~~~lg----e~~s~~~~iG~~LIi~g~~l~~r  414 (414)
                       |+..+ -|++ .++-.+.-.....+.+++. ......-+.+.+.++|-+=+.    .+++...++|.+++++|+++.+|
T Consensus        70 -wW~~~-GG~l-Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          70 -WWAWI-GGLL-GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             -hHHHH-ccch-hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence             33322 2333 3333445556677776654 456666778888888876443    56899999999999999777654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.36  E-value=0.024  Score=45.10  Aligned_cols=54  Identities=17%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHH-HhcccCchhHHHHHHH
Q 015064          190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLI  243 (414)
Q Consensus       190 l~~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l  243 (414)
                      .....++.++..++++.|.+.+ .+...+..+.+.+++. ++||+++..++.|+.+
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            3567888999999999999998 6666799999999998 7999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.29  E-value=1.3  Score=43.49  Aligned_cols=277  Identities=12%  Similarity=0.029  Sum_probs=161.2

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHh-----------cCcchhhhHHHHHHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA-----------RDDVKTRNAGIELGLW  191 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~-----------~~~~~~~~~~~~~gl~  191 (414)
                      -..|+++..+++++-++.++..|...+  =..|..+.-..+-.-++.|+..-.           .-+.....+..+.|++
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l   82 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL   82 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence            467899999999999999998887654  344555544555455555554321           1223345556677888


Q ss_pred             HHHHHHHHHHHHhhcchhHH-HHHHhhHHHHHHHHHHHh--------cccCchhHHHHHHHHHHhhhhhcccC-------
Q 015064          192 VSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGML--------GAIIPAHTWFGVLISALGVGMLECSG-------  255 (414)
Q Consensus       192 ~~~~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~~l--------~er~~~~~~~gi~l~~~Gv~li~~~~-------  255 (414)
                      ..++...|=.+++|+..+-. ++...+..++..++-.++        .++-....++|++++++|+.++..-+       
T Consensus        83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~  162 (344)
T PF06379_consen   83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKEL  162 (344)
T ss_pred             HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhh
Confidence            88888888999999887774 444556555555554432        23334467999999999999987432       


Q ss_pred             ------CCCchhhHHHHHHHHHHHHHHHHHhHhh------hccCCCCchhH----HHHHHHHHHHHHHHHHHHhccC-CC
Q 015064          256 ------SPPSVGDFLNFLSAIFFGIHMLRTERIS------RSTKKENFLPL----LGYEICVVALLSTIWVLVGGWF-DS  318 (414)
Q Consensus       256 ------~~~~~G~llal~aa~~~al~~v~~~~~~------~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~-~~  318 (414)
                            .....|.++++++++.-++..+-...-.      .+.. .+++..    ....+..+.+.-+...+..... ..
T Consensus       163 ~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G-~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~  241 (344)
T PF06379_consen  163 GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAG-VNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKN  241 (344)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcC-CCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCC
Confidence                  1236899999999988888877654211      1111 222211    1111222333333333332111 11


Q ss_pred             C---CCCCCCcchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCC----hhHHHHHhhhHHHHHHHHHHHHhc
Q 015064          319 S---QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVS----ATETAIIYGLEPLWGAGFAWFLLG  391 (414)
Q Consensus       319 ~---~~~~~~~~~~~~~~~w~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~----a~~~s~~~~l~pv~a~l~~~~~lg  391 (414)
                      .   .+.+.....+        .+.+...+..|++- ..++.+|.++-.+.+    ..--.+...+..+++-++|.+ ++
T Consensus       242 ~s~~~d~~~~~~~~--------~~N~~~~aLaG~lW-y~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lk  311 (344)
T PF06379_consen  242 WSWKGDYSVAKPPL--------LKNYLFCALAGVLW-YSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LK  311 (344)
T ss_pred             Cccccccccccchh--------HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HH
Confidence            1   1111000000        01122222233332 446667777766666    445567788888899999975 67


Q ss_pred             CCC------chhhHHHHHHHHHhhhcc
Q 015064          392 ERW------STAGWIGAALVLDVQIFL  412 (414)
Q Consensus       392 e~~------s~~~~iG~~LIi~g~~l~  412 (414)
                      |.-      -...++|.++++.++++.
T Consensus       312 EWKg~s~kt~~vl~~G~~vlI~s~~iv  338 (344)
T PF06379_consen  312 EWKGASKKTIRVLVLGIAVLILSVVIV  338 (344)
T ss_pred             HhccCCcccHHHHHHHHHHHHHHHHHH
Confidence            752      234567888888877653

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.19  E-value=0.025  Score=53.32  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      ..+.+.+-+++ ..+...+.+.++++.+|+...++..+..+++.++.+++++++++..||++..+++.|+.+.+
T Consensus        16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~   88 (244)
T PF04142_consen   16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ   88 (244)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence            34444444554 67788899999999999999999999999999999999999999999999999999998754

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.4  Score=41.45  Aligned_cols=129  Identities=11%  Similarity=0.065  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcCc------chhhhHHHHHHHHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARDD------VKTRNAGIELGLWVSLGY  196 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~~~~~gl~~~~~~  196 (414)
                      ...++..+++..+-.....+.-.+.+..+ |....++-+.++.+++..+...+.+.      .+.++|.+.-|+++....
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v   83 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV   83 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence            45567777788888777777777776665 99999999999888888766654332      122344455565555555


Q ss_pred             HHHHHHHhhcchhHHHHHH-hhHHHHHHHHHHH--h---cccCchhHHHHHHHHHHhhhhhc
Q 015064          197 FVEALGLLTSDAGRASFIS-LFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLE  252 (414)
Q Consensus       197 ~~~~~al~~~~~~~a~~l~-~~~Pl~~~ll~~~--l---~er~~~~~~~gi~l~~~Gv~li~  252 (414)
                      ...........++....+. .-+-+...++..+  +   +++++..+++|+++.++|+.++-
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5555666666666654444 4444455555543  3   47788899999999999955544

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.73  E-value=0.12  Score=42.61  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHh-hhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          350 FSTGICLWIEIAAMRDVSATETAIIY-GLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~-~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                      .....+-..|++.+.+.+-+.+.++. .+.-+++++.++++.+|..+...++|+++|+.|+.+
T Consensus        49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            33444566788889999999999995 899999999999888888899999999999999865

Many members are annotated as potential transmembrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.98  E-value=0.069  Score=52.08  Aligned_cols=130  Identities=15%  Similarity=0.086  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHhhh----cCCHHHHHHHHHHHHHHHHH-HHHHHhcCcch------hhh----HHHH
Q 015064          123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDVK------TRN----AGIE  187 (414)
Q Consensus       123 ~~~g~l~~lla~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~ll-~~~~~~~~~~~------~~~----~~~~  187 (414)
                      ...|.+..+.+.+..+.-.++.|.++.    ++++++....-.-++.+.++ |+.....+...      .+.    ....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            468999999999999999999998883    49999999999889998888 87766433221      111    1222


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhc
Q 015064          188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (414)
Q Consensus       188 ~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~  252 (414)
                      ..++.+..+..-|..+.++++-.-++....--.++.+.++ +++++++..+.+|.+++++|+++-.
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            2455566677888888999998888888777777788887 7899999999999999999998754

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.90  E-value=0.3  Score=46.82  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=106.1

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHHHHHHhc----------CcchhhhHHHHHH
Q 015064          122 KKIRSIFLLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELG  189 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~l~ll~~~~~~~----------~~~~~~~~~~~~g  189 (414)
                      ....|++++...-++=|+.+..-+.+.++  +++.++.+.-.++..+.-........          +.+...+..++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            34678999988888889888888777764  88999999988888887776654432          2344556678889


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhh
Q 015064          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (414)
Q Consensus       190 l~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li  251 (414)
                      .++..+..+.|+-++.-.+-.-+.|+-+--++..+++. .++.+++..+|+|+.+.+.|+.+=
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence            99999999999999987777777888888999999998 699999999999999999988763

>TIGR00803 nst UDP-galactose transporter

Probab=94.39  E-value=0.34  Score=44.74  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhh
Q 015064          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (414)
Q Consensus       185 ~~~~gl~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~l  250 (414)
                      .+...+....+..+..+.+++.+...-++...+.++++.+++. +++|+++..+++|+.+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4444566677778899999999999999999999999999998 79999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.36  E-value=0.78  Score=43.38  Aligned_cols=159  Identities=13%  Similarity=0.018  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT  205 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~  205 (414)
                      |++..+++++++|++++-.|.-.. -|++.+-++-.....+.-+..... +...+...+..+-|.+...++.+-.-.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~-gDg~~fQw~~~~~i~~~g~~v~~~-~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT-GDGFFFQWVMCSGIFLVGLVVNLI-LGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC-CCcHHHHHHHHHHHHHHHHHHHHh-cCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            456788999999999999996443 566665555544433333333322 333445556666678888999999999999


Q ss_pred             cchhHHHHHHhhHHH-HHHHHHH--Hhcc---cC--chhHHHHHHHHHHhhhhhccc--CC-------C-----------
Q 015064          206 SDAGRASFISLFTVI-VVPLFDG--MLGA---II--PAHTWFGVLISALGVGMLECS--GS-------P-----------  257 (414)
Q Consensus       206 ~~~~~a~~l~~~~Pl-~~~ll~~--~l~e---r~--~~~~~~gi~l~~~Gv~li~~~--~~-------~-----------  257 (414)
                      +..+....+-.+.-+ .....+.  ++++   .+  +....+|++++++|..+...-  +.       .           
T Consensus        79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~  158 (254)
T PF07857_consen   79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE  158 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence            999998888776444 4444443  3432   22  236789999999998887621  00       0           


Q ss_pred             ----------------------CchhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 015064          258 ----------------------PSVGDFLNFLSAIFFGIHMLRTERISRST  286 (414)
Q Consensus       258 ----------------------~~~G~llal~aa~~~al~~v~~~~~~~~~  286 (414)
                                            -..|..+++++++.|+...+=.....++.
T Consensus       159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence                                  03688999999999999887776665543

The region concerned is approximately 280 residues long.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.14  E-value=1.8  Score=42.83  Aligned_cols=133  Identities=18%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             cchHHHHHHHHHHHHHhhhH-------HHHHHhh-hcCCHHHHHHHHHH---HHHH-HHHHHHHH---hcCc------ch
Q 015064          122 KKIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAI-PFLPFVFW---ARDD------VK  180 (414)
Q Consensus       122 ~~~~g~l~~lla~~~wg~~~-------~~~k~~~-~~~~p~~~~~~R~~---~a~l-~ll~~~~~---~~~~------~~  180 (414)
                      ...||++.++++.+..+..+       +..+... .+.++.....-.+.   ++.+ .-+.++.+   ++++      ++
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            34689999999999988887       4444322 23454443333332   3333 23233332   2121      11


Q ss_pred             h-----hhH---HHHHHHHHHHHHHHHHHHHhhcchhHHHH---HH-hhHHHHHHHHHHHhcccCc--h----hHHHHHH
Q 015064          181 T-----RNA---GIELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP--A----HTWFGVL  242 (414)
Q Consensus       181 ~-----~~~---~~~~gl~~~~~~~~~~~al~~~~~~~a~~---l~-~~~Pl~~~ll~~~l~er~~--~----~~~~gi~  242 (414)
                      .     .+.   ..+.|+....++.+|..+-+..+.+.+.+   +. .+.-++..+-+.++||+-+  +    .-++|++
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHH
Confidence            1     111   24447777888889999988886665544   44 4444566665667998877  3    4578888


Q ss_pred             HHHHhhhhhccc
Q 015064          243 ISALGVGMLECS  254 (414)
Q Consensus       243 l~~~Gv~li~~~  254 (414)
                      +.++|++++...
T Consensus       331 liI~g~~lig~~  342 (345)
T PRK13499        331 VIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHhhc
Confidence            888888877643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.93  E-value=0.63  Score=43.04  Aligned_cols=129  Identities=9%  Similarity=-0.002  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHHHHH----------HhcCcchhhhHHHHHHHHH
Q 015064          125 RSIFLLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVF----------WARDDVKTRNAGIELGLWV  192 (414)
Q Consensus       125 ~g~l~~lla~~~wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~l~ll~~~~----------~~~~~~~~~~~~~~~gl~~  192 (414)
                      .|-++++++-..=|.....-...-.+  -+..+..+.-.+.+.+.+..-+.          ...|.+..+.....+++..
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56677777776667666655443322  23334444445555554443222          2334445556667778889


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcc
Q 015064          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (414)
Q Consensus       193 ~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~  253 (414)
                      .++..+.|.-+.+-++-..+++..+--.|+.+.+. +++.+++.++|+|..+.+.|...=..
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            99999999999988888889999999999999998 68999999999999999999876443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.79  E-value=0.031  Score=51.76  Aligned_cols=128  Identities=13%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhh
Q 015064          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (414)
Q Consensus       261 G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  340 (414)
                      +.+.+++-++.|+..-....+...+     |..-+..+.+.+.++.+...++..   +..       +         .+.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~-----p~qQ~lGtT~GALifaiiv~~~~~---p~~-------T---------~~~   58 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK-----PYQQTLGTTLGALIFAIIVFLFVS---PEL-------T---------LTI   58 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC-----hhHhhhhccHHHHHHHHHHheeec---Ccc-------c---------hhh
Confidence            5678899999999888777776543     222222222333333333222211   100       1         111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhcCCCchhhHH----HHHHHHHhhhccc
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERWSTAGWI----GAALVLDVQIFLP  413 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~~lge~~s~~~~i----G~~LIi~g~~l~~  413 (414)
                      +..-+..|.+- .+++..+.++++..+.+++.+++. ++.+-+.+++.++|||..+..+.+    ..+++++|+.+.+
T Consensus        59 ~iv~~isG~~W-s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs  135 (288)
T COG4975          59 FIVGFISGAFW-SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS  135 (288)
T ss_pred             HHHHHHhhhHh-hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence            33333344433 458999999999999999998875 667777899999999999988764    5677888887754

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=92.79  E-value=3.5  Score=40.51  Aligned_cols=62  Identities=18%  Similarity=0.286  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      ..+..-+++.+..+.+|+...+...+..+.+.++..++++++++..||....+..+|+.+.+
T Consensus       102 YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  102 YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            45566688999999999999999999999999999999999999999999999999998765

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=92.67  E-value=0.34  Score=38.84  Aligned_cols=114  Identities=11%  Similarity=0.100  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhhHHHHHHhhhcCCHHHH--HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 015064          129 LLNVITIVYASDIPILKAAEEIMHPASF--CAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTS  206 (414)
Q Consensus       129 ~~lla~~~wg~~~~~~k~~~~~~~p~~~--~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~~  206 (414)
                      -++..+++||...++.|......+-..-  ..+|..+.          .-+..--...++.--+++-.+..+||.-+++.
T Consensus         7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lq----------e~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a   76 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQ----------EMKTLFLNWEYLIPFLLNQCGSALYYLTLASA   76 (125)
T ss_pred             HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHH----------HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            4566788999999999987754221100  11111110          00111111223333445666778899999999


Q ss_pred             chhHHHHHHh-hHHHHHHHHHHHhcccCch-hHHHHHHHHHHhhhhhc
Q 015064          207 DAGRASFISL-FTVIVVPLFDGMLGAIIPA-HTWFGVLISALGVGMLE  252 (414)
Q Consensus       207 ~~~~a~~l~~-~~Pl~~~ll~~~l~er~~~-~~~~gi~l~~~Gv~li~  252 (414)
                      |.+.++-+.+ +.-.|+++.+..++|+.+. +.++|..+.+.|+.+.+
T Consensus        77 ~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   77 PISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             CceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            9999877765 5566888888888888775 56899999999987754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.22  E-value=1.8  Score=42.83  Aligned_cols=135  Identities=13%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHHHHHHh----cCcch--h---hhHHHH
Q 015064          121 SKKIRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVFWA----RDDVK--T---RNAGIE  187 (414)
Q Consensus       121 ~~~~~g~l~~lla~~~wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~----~~~~~--~---~~~~~~  187 (414)
                      .+...|-++.+++++++|..-++.|.-.++    ++--.+.-+--++..++++|.++.-    ..+..  .   ....+.
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF  322 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence            345789999999999999999999876653    3322222222344445555443321    11111  1   112233


Q ss_pred             HHHH-HHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHHH-hcccCchhHHHHHHHHHHhhhhhcccC
Q 015064          188 LGLW-VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (414)
Q Consensus       188 ~gl~-~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~-l~er~~~~~~~gi~l~~~Gv~li~~~~  255 (414)
                      .++. .+++-+++..|.-.+++-.+++-+.+.....++...+ -+.+++...++|....++|-+++...+
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            4554 3577799999999999999988888777777777775 478899999999999999999887654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.78  E-value=0.19  Score=48.56  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=84.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccc
Q 015064          258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV  337 (414)
Q Consensus       258 ~~~G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  337 (414)
                      ...|.++++.+.+..+...++.|+-.++...                    ...-.+  +..... ..++          
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~--------------------~~~ra~--~gg~~y-l~~~----------   65 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA--------------------SGLRAG--EGGYGY-LKEP----------   65 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHHHhh--------------------hccccc--CCCcch-hhhH----------
Confidence            4578889999999999888888876655210                    000000  000000 0111          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhc
Q 015064          338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIF  411 (414)
Q Consensus       338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l  411 (414)
                            .-+.|.+..++|-.+.+.+....+++.++++..++.+.+.+++..+++|.++....+|+++.++|..+
T Consensus        66 ------~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~  133 (335)
T KOG2922|consen   66 ------LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT  133 (335)
T ss_pred             ------HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence                  12457777778888888899999999999999999999999999999999999999999999888643

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.84  E-value=8.4  Score=37.38  Aligned_cols=128  Identities=10%  Similarity=0.006  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhh--cCCHHHHHHHHHHHHHHHHHHHHHHhcC---------cchh---hhHHHHHH
Q 015064          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKT---RNAGIELG  189 (414)
Q Consensus       124 ~~g~l~~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~---------~~~~---~~~~~~~g  189 (414)
                      .+|+.+++...+.-+...+..|.-.+  +.+-++++++..+.+.+.+.........         +...   +....+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            45788888888888888888887765  4777888889888888777766543221         1111   22333446


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhh
Q 015064          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (414)
Q Consensus       190 l~~~~~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li  251 (414)
                      +++++-.++.++..+..++...++.....-..+.+... +.++++++...+|+.++++|-++-
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y  298 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY  298 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence            67777778999999999999988888444444444445 467899999999999988886553

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=82.96  E-value=4.4  Score=38.33  Aligned_cols=124  Identities=17%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhccccchhh
Q 015064          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (414)
Q Consensus       261 G~llal~aa~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  340 (414)
                      |.+.+++|+++++-..+=.|+....    |.+...+++.....+..+...+..+.+   .   .                
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g----Dg~~fQw~~~~~i~~~g~~v~~~~~~p---~---f----------------   54 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG----DGFFFQWVMCSGIFLVGLVVNLILGFP---P---F----------------   54 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC----CcHHHHHHHHHHHHHHHHHHHHhcCCC---c---c----------------
Confidence            5678899999999999988877543    556655555554444444444443211   1   0                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHh-hhHHHHHHHHHHH-HhcCCC-----chhhHHHHHHHHHhhhc
Q 015064          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIY-GLEPLWGAGFAWF-LLGERW-----STAGWIGAALVLDVQIF  411 (414)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~-~l~pv~a~l~~~~-~lge~~-----s~~~~iG~~LIi~g~~l  411 (414)
                      +. ...+|..--..+..+-.-.+|.++-+..-.+- ..+.+.+-..+.+ +||+.+     .+.-++|.+++++|..+
T Consensus        55 ~p-~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~  131 (254)
T PF07857_consen   55 YP-WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGII  131 (254)
T ss_pred             ee-HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHh
Confidence            11 22233322344555556667777766654443 3366666666654 565543     55678899999888764

The region concerned is approximately 280 residues long.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=82.55  E-value=2.1  Score=38.64  Aligned_cols=58  Identities=17%  Similarity=0.344  Sum_probs=52.7

Q ss_pred             HHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhcc
Q 015064          355 CLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL  412 (414)
Q Consensus       355 ~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~  412 (414)
                      +..+|..++++++++.++.+..-+--+..+++++++|+++....+....+-+.|++..
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmi  123 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMI  123 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEE
Confidence            3448899999999999999999999999999999999999999999999988887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.69
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.53
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.43
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.16

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.69  E-value=1.7e-08  Score=85.07  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      .+++++++++|.+|.+++|+.+++++.++ ..+.|+++.+++++++||++++.+++|+++|++|+++.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            46788899999999999999999999999 899999999999999999999999999999999998753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.53  E-value=2.8e-07  Score=74.84  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064          346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP  413 (414)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~  413 (414)
                      ..++++.++++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||++++.+++|..+|++|+++.+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            46777888999999999999999999998 899999999999999999999999999999999998753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.43  E-value=4.5e-06  Score=67.60  Aligned_cols=101  Identities=14%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 015064          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT  205 (414)
Q Consensus       126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~  205 (414)
                      .+++++++.++-.......|...+ ..                            ...+.+...+....++.++.+++++
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~~-~~----------------------------~~~~~~~~~~~~~~~~~~~~~al~~   53 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSEG-FT----------------------------RLWPSVGTIICYCASFWLLAQTLAY   53 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC-cc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356677777777777777776421 10                            1112222234457888999999999


Q ss_pred             cchhHHHHH-HhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC
Q 015064          206 SDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG  255 (414)
Q Consensus       206 ~~~~~a~~l-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~  255 (414)
                      .|.+.+..+ ..+.|+++.+++. ++||+++..+++|+.+.+.|++++...+
T Consensus        54 ~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           54 IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            999999887 7999999999998 7999999999999999999999987543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.16  E-value=7.2e-06  Score=68.96  Aligned_cols=65  Identities=17%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHH-HhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064          190 LWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (414)
Q Consensus       190 l~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~  254 (414)
                      +...++++++.+++++.|++.+..+ .++.|+++.++++ +++|+++..+++|+++.++|++++...
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4466888999999999999999888 8999999999998 799999999999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00